0s autopkgtest [22:26:26]: starting date and time: 2024-03-17 22:26:26+0000 0s autopkgtest [22:26:26]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [22:26:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.j4ucxah4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ncbi-blast+,src:mbedtls --apt-upgrade ruby-crb-blast --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=ncbi-blast+/2.12.0+ds-4build1 mbedtls/2.28.7-1.1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-14.secgroup --name adt-noble-s390x-ruby-crb-blast-20240317-222626-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 167s autopkgtest [22:29:13]: testbed dpkg architecture: s390x 167s autopkgtest [22:29:13]: testbed apt version: 2.7.12 167s autopkgtest [22:29:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 168s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 169s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB] 169s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 169s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 169s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3691 kB] 169s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [639 kB] 169s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 169s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 169s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 169s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3878 kB] 170s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 170s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.2 kB] 170s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 172s Fetched 8913 kB in 3s (3445 kB/s) 172s Reading package lists... 174s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Calculating upgrade... 174s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 174s Reading package lists... 175s Building dependency tree... 175s Reading state information... 175s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 175s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 175s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 175s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 175s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 176s Reading package lists... 176s Reading package lists... 177s Building dependency tree... 177s Reading state information... 177s Calculating upgrade... 177s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 177s Reading package lists... 177s Building dependency tree... 177s Reading state information... 177s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 180s autopkgtest [22:29:26]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 180s autopkgtest [22:29:26]: @@@@@@@@@@@@@@@@@@@@ apt-source ruby-crb-blast 181s Get:1 http://ftpmaster.internal/ubuntu noble/universe ruby-crb-blast 0.6.9-5 (dsc) [2166 B] 181s Get:2 http://ftpmaster.internal/ubuntu noble/universe ruby-crb-blast 0.6.9-5 (tar) [37.2 kB] 181s Get:3 http://ftpmaster.internal/ubuntu noble/universe ruby-crb-blast 0.6.9-5 (diff) [5740 B] 181s gpgv: Signature made Mon Aug 21 21:53:37 2023 UTC 181s gpgv: using RSA key 8ED6C3F8BAC9DB7FC130A870F823A2729883C97C 181s gpgv: issuer "kanashiro@debian.org" 181s gpgv: Can't check signature: No public key 181s dpkg-source: warning: cannot verify inline signature for ./ruby-crb-blast_0.6.9-5.dsc: no acceptable signature found 181s autopkgtest [22:29:27]: testing package ruby-crb-blast version 0.6.9-5 182s autopkgtest [22:29:28]: build not needed 182s autopkgtest [22:29:28]: test gem2deb-test-runner: preparing testbed 183s Reading package lists... 183s Building dependency tree... 183s Reading state information... 184s Starting pkgProblemResolver with broken count: 0 184s Starting 2 pkgProblemResolver with broken count: 0 184s Done 184s The following additional packages will be installed: 184s gem2deb-test-runner help2man libgomp1 libmbedcrypto7t64 libmbedtls14t64 184s libmbedx509-1t64 libruby libruby3.1 ncbi-blast+ ncbi-data rake ruby 184s ruby-activesupport ruby-bio ruby-concurrent ruby-crb-blast ruby-facade 184s ruby-fixwhich ruby-i18n ruby-net-telnet ruby-pathname2 ruby-rubygems 184s ruby-sdbm ruby-shoulda ruby-shoulda-context ruby-shoulda-matchers 184s ruby-threach ruby-trollop ruby-tzinfo ruby-webrick ruby-xmlrpc ruby-zeitwerk 184s ruby3.1 rubygems-integration 184s Suggested packages: 184s ri ruby-dev clustalw emboss bundler 184s Recommended packages: 184s zip blast2 hmmer mafft muscle probcons sim4 t-coffee fonts-lato libjs-jquery 184s The following NEW packages will be installed: 184s autopkgtest-satdep gem2deb-test-runner help2man libgomp1 libmbedcrypto7t64 184s libmbedtls14t64 libmbedx509-1t64 libruby libruby3.1 ncbi-blast+ ncbi-data 184s rake ruby ruby-activesupport ruby-bio ruby-concurrent ruby-crb-blast 184s ruby-facade ruby-fixwhich ruby-i18n ruby-net-telnet ruby-pathname2 184s ruby-rubygems ruby-sdbm ruby-shoulda ruby-shoulda-context 184s ruby-shoulda-matchers ruby-threach ruby-trollop ruby-tzinfo ruby-webrick 184s ruby-xmlrpc ruby-zeitwerk ruby3.1 rubygems-integration 184s 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. 184s Need to get 24.9 MB/24.9 MB of archives. 184s After this operation, 110 MB of additional disk space will be used. 184s Get:1 /tmp/autopkgtest.wZu0pD/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [784 B] 184s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x rubygems-integration all 1.18 [5336 B] 184s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ruby-net-telnet all 0.2.0-1 [13.3 kB] 184s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ruby-webrick all 1.8.1-1 [52.3 kB] 184s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x ruby-xmlrpc all 0.3.2-2 [24.8 kB] 184s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libruby s390x 1:3.1+1 [4640 B] 184s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x ruby-sdbm s390x 1.0.0-5build3 [19.1 kB] 184s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libruby3.1 s390x 3.1.2-7ubuntu4 [5197 kB] 185s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x ruby3.1 s390x 3.1.2-7ubuntu4 [49.1 kB] 185s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x ruby-rubygems all 3.4.20-1 [238 kB] 185s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x ruby s390x 1:3.1+1 [3466 B] 185s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x rake all 13.0.6-3 [61.6 kB] 185s Get:13 http://ftpmaster.internal/ubuntu noble/universe s390x gem2deb-test-runner s390x 2.2.2 [18.2 kB] 185s Get:14 http://ftpmaster.internal/ubuntu noble/universe s390x help2man s390x 1.49.3 [201 kB] 185s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 185s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libmbedcrypto7t64 s390x 2.28.7-1.1ubuntu1 [216 kB] 185s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libmbedx509-1t64 s390x 2.28.7-1.1ubuntu1 [46.2 kB] 185s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libmbedtls14t64 s390x 2.28.7-1.1ubuntu1 [84.7 kB] 185s Get:19 http://ftpmaster.internal/ubuntu noble/universe s390x ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB] 185s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x ncbi-blast+ s390x 2.12.0+ds-4build1 [12.8 MB] 186s Get:21 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-concurrent all 1.1.6+dfsg-5build3 [212 kB] 186s Get:22 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-i18n all 1.14.1-1 [42.0 kB] 186s Get:23 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-tzinfo all 2.0.6-1 [55.2 kB] 186s Get:24 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-zeitwerk all 2.6.8-1 [36.0 kB] 186s Get:25 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-activesupport all 2:6.1.7.3+dfsg-3 [198 kB] 186s Get:26 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-bio all 2.0.5-1 [656 kB] 186s Get:27 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-trollop all 2.0-2.1 [14.9 kB] 186s Get:28 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-facade all 1.2.1-1 [8272 B] 186s Get:29 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-pathname2 all 1.8.2-2 [15.0 kB] 186s Get:30 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-fixwhich all 1.0.2-2 [4328 B] 186s Get:31 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-threach all 0.2.0-2 [5364 B] 186s Get:32 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-crb-blast all 0.6.9-5 [12.4 kB] 186s Get:33 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-shoulda-context all 2.0.0-2 [16.4 kB] 186s Get:34 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-shoulda-matchers all 4.3.0-2 [72.8 kB] 186s Get:35 http://ftpmaster.internal/ubuntu noble/universe s390x ruby-shoulda all 4.0.0-3 [5972 B] 186s Fetched 24.9 MB in 2s (11.1 MB/s) 186s Selecting previously unselected package rubygems-integration. 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 186s Preparing to unpack .../00-rubygems-integration_1.18_all.deb ... 187s Unpacking rubygems-integration (1.18) ... 187s Selecting previously unselected package ruby-net-telnet. 187s Preparing to unpack .../01-ruby-net-telnet_0.2.0-1_all.deb ... 187s Unpacking ruby-net-telnet (0.2.0-1) ... 187s Selecting previously unselected package ruby-webrick. 187s Preparing to unpack .../02-ruby-webrick_1.8.1-1_all.deb ... 187s Unpacking ruby-webrick (1.8.1-1) ... 187s Selecting previously unselected package ruby-xmlrpc. 187s Preparing to unpack .../03-ruby-xmlrpc_0.3.2-2_all.deb ... 187s Unpacking ruby-xmlrpc (0.3.2-2) ... 187s Selecting previously unselected package libruby:s390x. 187s Preparing to unpack .../04-libruby_1%3a3.1+1_s390x.deb ... 187s Unpacking libruby:s390x (1:3.1+1) ... 187s Selecting previously unselected package ruby-sdbm:s390x. 187s Preparing to unpack .../05-ruby-sdbm_1.0.0-5build3_s390x.deb ... 187s Unpacking ruby-sdbm:s390x (1.0.0-5build3) ... 187s Selecting previously unselected package libruby3.1:s390x. 187s Preparing to unpack .../06-libruby3.1_3.1.2-7ubuntu4_s390x.deb ... 187s Unpacking libruby3.1:s390x (3.1.2-7ubuntu4) ... 187s Selecting previously unselected package ruby3.1. 187s Preparing to unpack .../07-ruby3.1_3.1.2-7ubuntu4_s390x.deb ... 187s Unpacking ruby3.1 (3.1.2-7ubuntu4) ... 187s Selecting previously unselected package ruby-rubygems. 187s Preparing to unpack .../08-ruby-rubygems_3.4.20-1_all.deb ... 187s Unpacking ruby-rubygems (3.4.20-1) ... 187s Selecting previously unselected package ruby. 187s Preparing to unpack .../09-ruby_1%3a3.1+1_s390x.deb ... 187s Unpacking ruby (1:3.1+1) ... 187s Selecting previously unselected package rake. 187s Preparing to unpack .../10-rake_13.0.6-3_all.deb ... 187s Unpacking rake (13.0.6-3) ... 187s Selecting previously unselected package gem2deb-test-runner. 187s Preparing to unpack .../11-gem2deb-test-runner_2.2.2_s390x.deb ... 187s Unpacking gem2deb-test-runner (2.2.2) ... 187s Selecting previously unselected package help2man. 187s Preparing to unpack .../12-help2man_1.49.3_s390x.deb ... 187s Unpacking help2man (1.49.3) ... 187s Selecting previously unselected package libgomp1:s390x. 187s Preparing to unpack .../13-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 187s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 187s Selecting previously unselected package libmbedcrypto7t64:s390x. 187s Preparing to unpack .../14-libmbedcrypto7t64_2.28.7-1.1ubuntu1_s390x.deb ... 187s Unpacking libmbedcrypto7t64:s390x (2.28.7-1.1ubuntu1) ... 187s Selecting previously unselected package libmbedx509-1t64:s390x. 187s Preparing to unpack .../15-libmbedx509-1t64_2.28.7-1.1ubuntu1_s390x.deb ... 187s Unpacking libmbedx509-1t64:s390x (2.28.7-1.1ubuntu1) ... 187s Selecting previously unselected package libmbedtls14t64:s390x. 187s Preparing to unpack .../16-libmbedtls14t64_2.28.7-1.1ubuntu1_s390x.deb ... 187s Unpacking libmbedtls14t64:s390x (2.28.7-1.1ubuntu1) ... 187s Selecting previously unselected package ncbi-data. 187s Preparing to unpack .../17-ncbi-data_6.1.20170106+dfsg1-10_all.deb ... 187s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ... 187s Selecting previously unselected package ncbi-blast+. 187s Preparing to unpack .../18-ncbi-blast+_2.12.0+ds-4build1_s390x.deb ... 187s Unpacking ncbi-blast+ (2.12.0+ds-4build1) ... 188s Selecting previously unselected package ruby-concurrent. 188s Preparing to unpack .../19-ruby-concurrent_1.1.6+dfsg-5build3_all.deb ... 188s Unpacking ruby-concurrent (1.1.6+dfsg-5build3) ... 188s Selecting previously unselected package ruby-i18n. 188s Preparing to unpack .../20-ruby-i18n_1.14.1-1_all.deb ... 188s Unpacking ruby-i18n (1.14.1-1) ... 188s Selecting previously unselected package ruby-tzinfo. 188s Preparing to unpack .../21-ruby-tzinfo_2.0.6-1_all.deb ... 188s Unpacking ruby-tzinfo (2.0.6-1) ... 188s Selecting previously unselected package ruby-zeitwerk. 188s Preparing to unpack .../22-ruby-zeitwerk_2.6.8-1_all.deb ... 188s Unpacking ruby-zeitwerk (2.6.8-1) ... 188s Selecting previously unselected package ruby-activesupport. 188s Preparing to unpack .../23-ruby-activesupport_2%3a6.1.7.3+dfsg-3_all.deb ... 188s Unpacking ruby-activesupport (2:6.1.7.3+dfsg-3) ... 188s Selecting previously unselected package ruby-bio. 188s Preparing to unpack .../24-ruby-bio_2.0.5-1_all.deb ... 188s Unpacking ruby-bio (2.0.5-1) ... 188s Selecting previously unselected package ruby-trollop. 188s Preparing to unpack .../25-ruby-trollop_2.0-2.1_all.deb ... 188s Unpacking ruby-trollop (2.0-2.1) ... 188s Selecting previously unselected package ruby-facade. 188s Preparing to unpack .../26-ruby-facade_1.2.1-1_all.deb ... 188s Unpacking ruby-facade (1.2.1-1) ... 188s Selecting previously unselected package ruby-pathname2. 188s Preparing to unpack .../27-ruby-pathname2_1.8.2-2_all.deb ... 188s Unpacking ruby-pathname2 (1.8.2-2) ... 188s Selecting previously unselected package ruby-fixwhich. 188s Preparing to unpack .../28-ruby-fixwhich_1.0.2-2_all.deb ... 188s Unpacking ruby-fixwhich (1.0.2-2) ... 188s Selecting previously unselected package ruby-threach. 188s Preparing to unpack .../29-ruby-threach_0.2.0-2_all.deb ... 188s Unpacking ruby-threach (0.2.0-2) ... 188s Selecting previously unselected package ruby-crb-blast. 188s Preparing to unpack .../30-ruby-crb-blast_0.6.9-5_all.deb ... 188s Unpacking ruby-crb-blast (0.6.9-5) ... 188s Selecting previously unselected package ruby-shoulda-context. 188s Preparing to unpack .../31-ruby-shoulda-context_2.0.0-2_all.deb ... 188s Unpacking ruby-shoulda-context (2.0.0-2) ... 188s Selecting previously unselected package ruby-shoulda-matchers. 188s Preparing to unpack .../32-ruby-shoulda-matchers_4.3.0-2_all.deb ... 188s Unpacking ruby-shoulda-matchers (4.3.0-2) ... 188s Selecting previously unselected package ruby-shoulda. 188s Preparing to unpack .../33-ruby-shoulda_4.0.0-3_all.deb ... 188s Unpacking ruby-shoulda (4.0.0-3) ... 188s Selecting previously unselected package autopkgtest-satdep. 188s Preparing to unpack .../34-1-autopkgtest-satdep.deb ... 188s Unpacking autopkgtest-satdep (0) ... 188s Setting up ncbi-data (6.1.20170106+dfsg1-10) ... 188s Setting up ruby-facade (1.2.1-1) ... 188s Setting up libmbedcrypto7t64:s390x (2.28.7-1.1ubuntu1) ... 188s Setting up rubygems-integration (1.18) ... 188s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 188s Setting up ruby-concurrent (1.1.6+dfsg-5build3) ... 188s Setting up help2man (1.49.3) ... 188s Setting up ruby-net-telnet (0.2.0-1) ... 188s Setting up ruby-i18n (1.14.1-1) ... 188s Setting up ruby-webrick (1.8.1-1) ... 188s Setting up ruby-pathname2 (1.8.2-2) ... 188s Setting up ruby-xmlrpc (0.3.2-2) ... 188s Setting up ruby-zeitwerk (2.6.8-1) ... 188s Setting up ruby-bio (2.0.5-1) ... 188s Setting up libmbedx509-1t64:s390x (2.28.7-1.1ubuntu1) ... 188s Setting up ruby-tzinfo (2.0.6-1) ... 188s Setting up libmbedtls14t64:s390x (2.28.7-1.1ubuntu1) ... 188s Setting up ncbi-blast+ (2.12.0+ds-4build1) ... 188s Setting up rake (13.0.6-3) ... 188s Setting up libruby3.1:s390x (3.1.2-7ubuntu4) ... 188s Setting up libruby:s390x (1:3.1+1) ... 188s Setting up ruby-rubygems (3.4.20-1) ... 188s Setting up ruby3.1 (3.1.2-7ubuntu4) ... 188s Setting up ruby-sdbm:s390x (1.0.0-5build3) ... 188s Setting up ruby (1:3.1+1) ... 188s Setting up ruby-threach (0.2.0-2) ... 188s Setting up ruby-fixwhich (1.0.2-2) ... 188s Setting up ruby-activesupport (2:6.1.7.3+dfsg-3) ... 188s Setting up ruby-shoulda-context (2.0.0-2) ... 188s Setting up ruby-trollop (2.0-2.1) ... 188s Setting up gem2deb-test-runner (2.2.2) ... 188s Setting up ruby-crb-blast (0.6.9-5) ... 188s Setting up ruby-shoulda-matchers (4.3.0-2) ... 188s Setting up ruby-shoulda (4.0.0-3) ... 188s Setting up autopkgtest-satdep (0) ... 188s Processing triggers for libc-bin (2.39-0ubuntu2) ... 188s Processing triggers for man-db (2.12.0-3) ... 189s Processing triggers for install-info (7.1-3) ... 191s (Reading database ... 56720 files and directories currently installed.) 191s Removing autopkgtest-satdep (0) ... 192s autopkgtest [22:29:38]: test gem2deb-test-runner: gem2deb-test-runner --autopkgtest --check-dependencies 2>&1 192s autopkgtest [22:29:38]: test gem2deb-test-runner: [----------------------- 192s 192s ┌──────────────────────────────────────────────────────────────────────────────┐ 192s │ Checking Rubygems dependency resolution on ruby3.1 │ 192s └──────────────────────────────────────────────────────────────────────────────┘ 192s 192s RUBYLIB=. GEM_PATH= ruby3.1 -e gem\ \"crb-blast\" 192s mv lib ./.gem2deb.lib 192s mv ./.gem2deb.lib lib 192s 192s ┌──────────────────────────────────────────────────────────────────────────────┐ 192s │ Run tests for ruby3.1 from debian/ruby-tests.rake │ 192s └──────────────────────────────────────────────────────────────────────────────┘ 192s 192s RUBYLIB=. GEM_PATH= ruby3.1 -S rake --rakelibdir /gem2deb-nonexistent -f debian/ruby-tests.rake 192s mv lib ./.gem2deb.lib 192s /usr/bin/ruby3.1 -w -I"test" /usr/lib/ruby/gems/3.1.0/gems/rake-13.0.6/lib/rake/rake_test_loader.rb "test/test_test.rb" "test/test_bin.rb" "test/test_test.rb" "test/test_test2.rb" "test/test_test3.rb" -v 192s /usr/lib/ruby/vendor_ruby/fixwhich.rb:3: warning: assigned but unused variable - e 192s /usr/lib/ruby/vendor_ruby/pathname2.rb:211: warning: method redefined; discarding old children 192s /usr/share/rubygems-integration/all/gems/facade-1.2.1/lib/facade.rb:40: warning: previous definition of children was here 192s /usr/lib/ruby/vendor_ruby/threach.rb:7: warning: `*' interpreted as argument prefix 192s /tmp/autopkgtest.wZu0pD/build.5m3/src/test/test_test3.rb:29: warning: assigned but unused variable - blaster 192s /tmp/autopkgtest.wZu0pD/build.5m3/src/test/test_test3.rb:45: warning: assigned but unused variable - dbs 192s /tmp/autopkgtest.wZu0pD/build.5m3/src/test/test_test3.rb:46: warning: assigned but unused variable - run 192s /tmp/autopkgtest.wZu0pD/build.5m3/src/test/test_test3.rb:47: warning: assigned but unused variable - load 192s Loaded suite /usr/lib/ruby/gems/3.1.0/gems/rake-13.0.6/lib/rake/rake_test_loader 192s Started 192s Test2CRBBlast: 192s test: crb-blast should add secondary hits. : .: (0.225163) 193s test: crb-blast should break input file into no more pieces than there are sequences. : .: (0.211562) 193s test: crb-blast should break input file into pieces. :.: (0.220354) 193s test: crb-blast should find reciprocals. : .: (0.228808) 193s test: crb-blast should get non reciprocal hits. : .: (0.227333) 194s test: crb-blast should load output should check if the databases exist. : .: (0.225254) 194s test: crb-blast should run blast should check if the databases exist yet. : .: (0.224207) 194s test: crb-blast should setup2 should run ok. : .: (0.217366) 194s Test3CRBBlast: 194s test: crb-blast should raise error when files don't exist. : .: (0.000529) 194s test: crb-blast should run. : .: (0.323143) 195s test: crb-blast should work for query sequences with pipes. : .: (0.181060) 195s TestBinary: 195s test: crb-blast should run binary. : .: (0.101417) 195s TestCRBBlast: 195s test: crb-blast should check if contig has reciprocal hit. : .: (0.259951) 195s test: crb-blast should determine that the target is a protein sequence. : .: (0.270274) 195s test: crb-blast should find reciprocals. : .: (0.271180) 196s test: crb-blast should get number of reciprocals. : .: (0.268578) 196s test: crb-blast should get query results. : .: (0.264098) 196s test: crb-blast should load outputs. : .: (0.259583) 196s test: crb-blast should not find fake scaffold name. : .: (0.259850) 197s test: crb-blast should output all reciprocal hits. : .: (0.260506) 197s test: crb-blast should run blast. : .: (0.265597) 197s test: crb-blast should setup should run ok. : .: (0.263111) 197s 197s Finished in 5.031472921 seconds. 197s ------------------------------------------------------------------------------- 197s 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 197s 100% passed 197s ------------------------------------------------------------------------------- 197s 4.37 tests/s, 8.35 assertions/s 197s mv ./.gem2deb.lib lib 198s autopkgtest [22:29:44]: test gem2deb-test-runner: -----------------------] 198s autopkgtest [22:29:44]: test gem2deb-test-runner: - - - - - - - - - - results - - - - - - - - - - 198s gem2deb-test-runner PASS 199s autopkgtest [22:29:45]: @@@@@@@@@@@@@@@@@@@@ summary 199s gem2deb-test-runner PASS 216s Creating nova instance adt-noble-s390x-ruby-crb-blast-20240317-222626-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240316.img (UUID 7afe023c-7cb8-41b6-91a7-c69e7d1e7c0d)...