0s autopkgtest [10:07:27]: starting date: 2024-03-12 0s autopkgtest [10:07:27]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline 0s autopkgtest [10:07:27]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lby0w9u5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-cran-rcpparmadillo --apt-upgrade r-cran-sctransform --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-rcpparmadillo/0.12.8.1.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-19.secgroup --name adt-noble-s390x-r-cran-sctransform-20240312-100727-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 314s autopkgtest [10:12:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 315s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 315s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [41.4 kB] 315s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2784 kB] 317s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 317s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [449 kB] 317s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [585 kB] 317s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 317s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 317s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 317s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3089 kB] 318s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 318s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [37.8 kB] 318s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 320s Fetched 7120 kB in 4s (1679 kB/s) 320s Reading package lists... 325s Reading package lists... 325s Building dependency tree... 325s Reading state information... 325s Calculating upgrade... 325s The following packages will be upgraded: 325s klibc-utils libklibc python3-attr 326s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 326s Need to get 217 kB of archives. 326s After this operation, 0 B of additional disk space will be used. 326s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x klibc-utils s390x 2.0.13-4 [114 kB] 326s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libklibc s390x 2.0.13-4 [54.5 kB] 326s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x python3-attr all 23.2.0-2 [48.6 kB] 326s Fetched 217 kB in 1s (392 kB/s) 326s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52188 files and directories currently installed.) 326s Preparing to unpack .../klibc-utils_2.0.13-4_s390x.deb ... 326s Unpacking klibc-utils (2.0.13-4) over (2.0.13-2ubuntu1) ... 326s Preparing to unpack .../libklibc_2.0.13-4_s390x.deb ... 326s Unpacking libklibc:s390x (2.0.13-4) over (2.0.13-2ubuntu1) ... 326s Preparing to unpack .../python3-attr_23.2.0-2_all.deb ... 327s Unpacking python3-attr (23.2.0-2) over (23.2.0-1) ... 327s Setting up python3-attr (23.2.0-2) ... 327s Setting up libklibc:s390x (2.0.13-4) ... 327s Setting up klibc-utils (2.0.13-4) ... 327s Processing triggers for initramfs-tools (0.142ubuntu20) ... 327s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 327s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 330s Using config file '/etc/zipl.conf' 330s Building bootmap in '/boot' 330s Adding IPL section 'ubuntu' (default) 330s Preparing boot device for LD-IPL: vda (0000). 330s Done. 331s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 331s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 331s Reading package lists... 331s Building dependency tree... 331s Reading state information... 331s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 332s Unknown architecture, assuming PC-style ttyS0 332s sh: Attempting to set up Debian/Ubuntu apt sources automatically 332s sh: Distribution appears to be Ubuntu 335s Reading package lists... 335s Building dependency tree... 335s Reading state information... 336s eatmydata is already the newest version (131-1). 336s dbus is already the newest version (1.14.10-4ubuntu1). 336s dbus set to manually installed. 336s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 336s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 336s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 336s Reading package lists... 336s Building dependency tree... 336s Reading state information... 336s rng-tools-debian is already the newest version (2.4). 336s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 337s Reading package lists... 337s Building dependency tree... 337s Reading state information... 337s haveged is already the newest version (1.9.14-1ubuntu1). 337s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 337s Reading package lists... 338s Building dependency tree... 338s Reading state information... 338s The following packages will be REMOVED: 338s cloud-init* python3-configobj* python3-debconf* 338s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 338s After this operation, 3248 kB disk space will be freed. 338s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52188 files and directories currently installed.) 338s Removing cloud-init (24.1-0ubuntu1) ... 339s Removing python3-configobj (5.0.8-3) ... 339s Removing python3-debconf (1.5.86) ... 339s Processing triggers for man-db (2.12.0-3) ... 339s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51799 files and directories currently installed.) 339s Purging configuration files for cloud-init (24.1-0ubuntu1) ... 340s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 340s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 341s Reading package lists... 341s Building dependency tree... 341s Reading state information... 341s linux-generic is already the newest version (6.8.0-11.11+1). 341s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 342s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 342s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 342s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 342s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 342s Hit:5 http://ftpmaster.internal/ubuntu noble-backports InRelease 345s Reading package lists... 345s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 345s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 345s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 346s Reading package lists... 346s Building dependency tree... 346s Reading state information... 346s Calculating upgrade... 346s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 346s Reading package lists... 346s Building dependency tree... 346s Reading state information... 347s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 347s autopkgtest [10:13:14]: rebooting testbed after setup commands that affected boot 363s autopkgtest [10:13:30]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 363s autopkgtest [10:13:30]: testbed dpkg architecture: s390x 364s autopkgtest [10:13:31]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-sctransform 365s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 365s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 365s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-sctransform 0.4.1-1 (dsc) [2408 B] 366s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-sctransform 0.4.1-1 (tar) [198 kB] 366s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-sctransform 0.4.1-1 (diff) [2988 B] 366s gpgv: Signature made Wed Nov 1 07:12:04 2023 UTC 366s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 366s gpgv: issuer "tille@debian.org" 366s gpgv: Can't check signature: No public key 366s dpkg-source: warning: cannot verify inline signature for ./r-cran-sctransform_0.4.1-1.dsc: no acceptable signature found 366s autopkgtest [10:13:33]: testing package r-cran-sctransform version 0.4.1-1 366s autopkgtest [10:13:33]: build not needed 370s autopkgtest [10:13:37]: test run-unit-test: preparing testbed 374s Reading package lists... 375s Building dependency tree... 375s Reading state information... 375s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 375s Starting 2 pkgProblemResolver with broken count: 0 375s Done 375s Done 375s Starting pkgProblemResolver with broken count: 0 375s Starting 2 pkgProblemResolver with broken count: 0 375s Done 376s The following additional packages will be installed: 376s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 376s fonts-glyphicons-halflings fonts-mathjax libblas3 libcairo2 libdatrie1 376s libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 376s libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 376s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 376s liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 376s libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 376s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 376s libxft2 libxrender1 libxss1 libxt6 littler node-normalize.css r-base-core 376s r-cran-brio r-cran-callr r-cran-cli r-cran-codetools r-cran-colorspace 376s r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 376s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fs r-cran-future 376s r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals 376s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-irlba 376s r-cran-isoband r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lattice 376s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mass 376s r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme 376s r-cran-parallelly r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 376s r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx 376s r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 376s r-cran-rematch2 r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-scales 376s r-cran-sctransform r-cran-stringi r-cran-stringr r-cran-testthat 376s r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridislite 376s r-cran-waldo r-cran-withr r-cran-xfun r-cran-yaml unzip x11-common xdg-utils 376s zip 376s Suggested packages: 376s fonts-mathjax-extras fonts-stix libjs-mathjax-doc tcl8.6 tk8.6 376s libjs-html5shiv elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 376s r-cran-covr r-cran-spelling r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm 376s r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-png r-cran-jpeg 376s r-cran-rmarkdown r-cran-viridis r-cran-rstudioapi r-cran-markdown 376s r-cran-magick r-cran-sf r-cran-getopt r-cran-bit64 r-cran-dbi 376s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival 376s r-cran-units r-cran-vdiffr r-cran-inline r-cran-bench r-cran-blob 376s r-cran-here r-cran-hms r-cran-htmltools r-cran-purrr r-cran-tidyr 376s Recommended packages: 376s javascript-common r-recommended r-base-dev r-doc-html r-cran-covr 376s r-cran-cliapp r-cran-mockery r-cran-htmltools r-cran-htmlwidgets 376s r-cran-rmarkdown r-cran-rstudioapi r-cran-whoami r-cran-gh r-cran-spelling 376s r-cran-bench r-cran-broom r-cran-dbi r-cran-dbplyr r-cran-lobstr 376s r-cran-purrr r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-tidyr 376s r-cran-unitizer r-cran-rhpcblasctl r-cran-r.rsp r-cran-markdown 376s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 376s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 376s r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-testit r-cran-httr 376s r-cran-bslib r-cran-formatr r-cran-gridsvg r-cran-curl r-cran-jpeg 376s r-cran-magick r-cran-png r-cran-reticulate r-cran-rgl r-cran-sass 376s r-cran-tikzdevice r-cran-tinytex r-cran-webshot node-highlight.js 376s r-cran-lintr r-cran-tidyverse r-cran-r.utils r-cran-base64enc 376s r-cran-r.devices r-cran-lubridate r-cran-cpp11 r-cran-bitops r-cran-mathjaxr 376s r-cran-mockr r-cran-remotes r-cran-abind r-cran-doparallel r-cran-foreach 376s r-cran-iterators r-cran-itertools r-cran-webfakes r-cran-pingr 376s r-cran-usethis r-cran-bit64 r-cran-dichromat r-cran-hms r-cran-shiny 376s r-cran-data.table r-cran-formattable r-cran-pkgdown r-cran-zeallot 376s r-cran-mime r-cran-renv r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl 376s libx11-protocol-perl x11-utils x11-xserver-utils 376s The following NEW packages will be installed: 376s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 376s fonts-glyphicons-halflings fonts-mathjax libblas3 libcairo2 libdatrie1 376s libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 376s libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 376s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 376s liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 376s libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 376s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 376s libxft2 libxrender1 libxss1 libxt6 littler node-normalize.css r-base-core 376s r-cran-brio r-cran-callr r-cran-cli r-cran-codetools r-cran-colorspace 376s r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 376s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fs r-cran-future 376s r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals 376s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-irlba 376s r-cran-isoband r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lattice 376s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mass 376s r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme 376s r-cran-parallelly r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 376s r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx 376s r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 376s r-cran-rematch2 r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-scales 376s r-cran-sctransform r-cran-stringi r-cran-stringr r-cran-testthat 376s r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridislite 376s r-cran-waldo r-cran-withr r-cran-xfun r-cran-yaml unzip x11-common xdg-utils 376s zip 376s 0 upgraded, 124 newly installed, 0 to remove and 0 not upgraded. 376s 1 not fully installed or removed. 376s Need to get 94.6 MB of archives. 376s After this operation, 217 MB of additional disk space will be used. 376s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 376s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 376s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 376s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 376s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 376s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 376s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 376s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 376s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 376s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 376s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 376s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 376s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 376s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 376s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 376s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 376s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 377s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 377s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 377s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 377s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 377s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 377s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 377s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 377s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 377s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 377s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 377s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 377s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 377s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 377s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 377s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 377s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 377s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 377s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 377s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 377s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 377s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 377s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 377s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 377s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 377s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 377s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 377s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 378s Get:45 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 378s Get:46 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 378s Get:47 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 378s Get:48 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 378s Get:49 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 378s Get:50 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 378s Get:51 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 378s Get:52 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 378s Get:53 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 378s Get:54 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 378s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 378s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 378s Get:57 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 378s Get:58 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 378s Get:59 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 378s Get:60 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 378s Get:61 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 378s Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 378s Get:63 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 378s Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 378s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 378s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-globals all 0.16.2-1 [117 kB] 378s Get:67 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 378s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-parallelly all 1.36.0-1 [357 kB] 378s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-future all 1.33.1+dfsg-1 [634 kB] 378s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 378s Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 378s Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB] 378s Get:73 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-nlme s390x 3.1.164-1 [2268 kB] 378s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 378s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-farver s390x 2.1.1-1 [1347 kB] 378s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB] 378s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-colorspace s390x 2.1-0+dfsg-1 [1540 kB] 378s Get:78 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-munsell all 0.5.0-2build1 [208 kB] 378s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 378s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB] 378s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-scales all 1.3.0-1 [603 kB] 378s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 378s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 378s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x littler all 0.3.19-1 [2472 B] 378s Get:85 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 378s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 378s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plyr s390x 1.8.9-1 [835 kB] 378s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 379s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 379s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-reshape2 s390x 1.4.4-2build1 [111 kB] 379s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gridextra all 2.3-3build1 [1024 kB] 379s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 379s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-cran-rcpparmadillo s390x 0.12.8.1.0-1 [869 kB] 379s Get:94 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sctransform s390x 0.4.1-1 [509 kB] 379s Get:95 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-irlba s390x 2.3.5.1-2 [295 kB] 379s Get:96 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-brio s390x 1.1.4-1 [37.8 kB] 379s Get:97 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ps s390x 1.7.6-1 [313 kB] 379s Get:98 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-processx s390x 3.8.3-1 [364 kB] 379s Get:99 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-callr all 3.7.3-2 [425 kB] 379s Get:100 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-desc all 1.4.3-1 [359 kB] 379s Get:101 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 379s Get:102 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 379s Get:103 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 379s Get:104 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 379s Get:105 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgbuild all 1.4.3-1 [209 kB] 379s Get:106 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rprojroot all 2.0.4-1 [124 kB] 379s Get:107 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgload all 1.3.4-1 [207 kB] 379s Get:108 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB] 379s Get:109 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB] 379s Get:110 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 380s Get:111 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-waldo all 0.5.2-1build1 [120 kB] 380s Get:112 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-testthat s390x 3.2.1-1 [1688 kB] 380s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 380s Get:114 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 380s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 380s Get:116 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 380s Get:117 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 380s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 380s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 380s Get:120 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 380s Get:121 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 380s Get:122 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 380s Get:123 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 380s Get:124 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 381s Preconfiguring packages ... 381s Fetched 94.6 MB in 5s (20.9 MB/s) 381s Selecting previously unselected package zip. 381s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51744 files and directories currently installed.) 381s Preparing to unpack .../000-zip_3.0-13_s390x.deb ... 381s Unpacking zip (3.0-13) ... 381s Selecting previously unselected package unzip. 381s Preparing to unpack .../001-unzip_6.0-28ubuntu3_s390x.deb ... 381s Unpacking unzip (6.0-28ubuntu3) ... 381s Selecting previously unselected package libpaper1:s390x. 381s Preparing to unpack .../002-libpaper1_1.1.29_s390x.deb ... 381s Unpacking libpaper1:s390x (1.1.29) ... 381s Selecting previously unselected package libpaper-utils. 381s Preparing to unpack .../003-libpaper-utils_1.1.29_s390x.deb ... 381s Unpacking libpaper-utils (1.1.29) ... 381s Selecting previously unselected package xdg-utils. 381s Preparing to unpack .../004-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 381s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 381s Selecting previously unselected package libblas3:s390x. 381s Preparing to unpack .../005-libblas3_3.12.0-3_s390x.deb ... 381s Unpacking libblas3:s390x (3.12.0-3) ... 381s Selecting previously unselected package libfreetype6:s390x. 381s Preparing to unpack .../006-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 381s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 381s Selecting previously unselected package fonts-dejavu-mono. 381s Preparing to unpack .../007-fonts-dejavu-mono_2.37-8_all.deb ... 381s Unpacking fonts-dejavu-mono (2.37-8) ... 381s Selecting previously unselected package fonts-dejavu-core. 381s Preparing to unpack .../008-fonts-dejavu-core_2.37-8_all.deb ... 381s Unpacking fonts-dejavu-core (2.37-8) ... 382s Selecting previously unselected package fontconfig-config. 382s Preparing to unpack .../009-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 382s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 382s Selecting previously unselected package libfontconfig1:s390x. 382s Preparing to unpack .../010-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 382s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 382s Selecting previously unselected package libpixman-1-0:s390x. 382s Preparing to unpack .../011-libpixman-1-0_0.42.2-1_s390x.deb ... 382s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 382s Selecting previously unselected package libxcb-render0:s390x. 382s Preparing to unpack .../012-libxcb-render0_1.15-1_s390x.deb ... 382s Unpacking libxcb-render0:s390x (1.15-1) ... 382s Selecting previously unselected package libxcb-shm0:s390x. 382s Preparing to unpack .../013-libxcb-shm0_1.15-1_s390x.deb ... 382s Unpacking libxcb-shm0:s390x (1.15-1) ... 382s Selecting previously unselected package libxrender1:s390x. 382s Preparing to unpack .../014-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 382s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 382s Selecting previously unselected package libcairo2:s390x. 382s Preparing to unpack .../015-libcairo2_1.18.0-1_s390x.deb ... 382s Unpacking libcairo2:s390x (1.18.0-1) ... 382s Selecting previously unselected package libgomp1:s390x. 382s Preparing to unpack .../016-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 382s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 382s Selecting previously unselected package libjpeg-turbo8:s390x. 382s Preparing to unpack .../017-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 382s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 382s Selecting previously unselected package libjpeg8:s390x. 382s Preparing to unpack .../018-libjpeg8_8c-2ubuntu11_s390x.deb ... 382s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 382s Selecting previously unselected package libgfortran5:s390x. 382s Preparing to unpack .../019-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 382s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 382s Selecting previously unselected package liblapack3:s390x. 382s Preparing to unpack .../020-liblapack3_3.12.0-3_s390x.deb ... 382s Unpacking liblapack3:s390x (3.12.0-3) ... 382s Selecting previously unselected package fontconfig. 382s Preparing to unpack .../021-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 382s Unpacking fontconfig (2.15.0-1ubuntu1) ... 382s Selecting previously unselected package libgraphite2-3:s390x. 382s Preparing to unpack .../022-libgraphite2-3_1.3.14-2_s390x.deb ... 382s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 382s Selecting previously unselected package libharfbuzz0b:s390x. 382s Preparing to unpack .../023-libharfbuzz0b_8.3.0-2_s390x.deb ... 382s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 382s Selecting previously unselected package libthai-data. 382s Preparing to unpack .../024-libthai-data_0.1.29-2_all.deb ... 382s Unpacking libthai-data (0.1.29-2) ... 382s Selecting previously unselected package libdatrie1:s390x. 382s Preparing to unpack .../025-libdatrie1_0.2.13-3_s390x.deb ... 382s Unpacking libdatrie1:s390x (0.2.13-3) ... 382s Selecting previously unselected package libthai0:s390x. 382s Preparing to unpack .../026-libthai0_0.1.29-2_s390x.deb ... 382s Unpacking libthai0:s390x (0.1.29-2) ... 382s Selecting previously unselected package libpango-1.0-0:s390x. 382s Preparing to unpack .../027-libpango-1.0-0_1.51.0+ds-4_s390x.deb ... 382s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ... 382s Selecting previously unselected package libpangoft2-1.0-0:s390x. 382s Preparing to unpack .../028-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ... 382s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 382s Selecting previously unselected package libpangocairo-1.0-0:s390x. 382s Preparing to unpack .../029-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 382s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 382s Selecting previously unselected package libtcl8.6:s390x. 382s Preparing to unpack .../030-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 382s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 382s Selecting previously unselected package libdeflate0:s390x. 382s Preparing to unpack .../031-libdeflate0_1.19-1_s390x.deb ... 382s Unpacking libdeflate0:s390x (1.19-1) ... 382s Selecting previously unselected package libjbig0:s390x. 382s Preparing to unpack .../032-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 382s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 382s Selecting previously unselected package libsharpyuv0:s390x. 382s Preparing to unpack .../033-libsharpyuv0_1.3.2-0.4_s390x.deb ... 382s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 382s Selecting previously unselected package libwebp7:s390x. 382s Preparing to unpack .../034-libwebp7_1.3.2-0.4_s390x.deb ... 382s Unpacking libwebp7:s390x (1.3.2-0.4) ... 382s Selecting previously unselected package libtiff6:s390x. 382s Preparing to unpack .../035-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 382s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 382s Selecting previously unselected package libxft2:s390x. 382s Preparing to unpack .../036-libxft2_2.3.6-1_s390x.deb ... 382s Unpacking libxft2:s390x (2.3.6-1) ... 382s Selecting previously unselected package x11-common. 382s Preparing to unpack .../037-x11-common_1%3a7.7+23ubuntu2_all.deb ... 382s Unpacking x11-common (1:7.7+23ubuntu2) ... 382s Selecting previously unselected package libxss1:s390x. 382s Preparing to unpack .../038-libxss1_1%3a1.2.3-1build2_s390x.deb ... 382s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 382s Selecting previously unselected package libtk8.6:s390x. 382s Preparing to unpack .../039-libtk8.6_8.6.13-2_s390x.deb ... 382s Unpacking libtk8.6:s390x (8.6.13-2) ... 382s Selecting previously unselected package libice6:s390x. 383s Preparing to unpack .../040-libice6_2%3a1.0.10-1build2_s390x.deb ... 383s Unpacking libice6:s390x (2:1.0.10-1build2) ... 383s Selecting previously unselected package libsm6:s390x. 383s Preparing to unpack .../041-libsm6_2%3a1.2.3-1build2_s390x.deb ... 383s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 383s Selecting previously unselected package libxt6:s390x. 383s Preparing to unpack .../042-libxt6_1%3a1.2.1-1.1_s390x.deb ... 383s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 383s Selecting previously unselected package r-base-core. 383s Preparing to unpack .../043-r-base-core_4.3.2-1build1_s390x.deb ... 383s Unpacking r-base-core (4.3.2-1build1) ... 383s Selecting previously unselected package r-cran-cli. 383s Preparing to unpack .../044-r-cran-cli_3.6.2-1_s390x.deb ... 383s Unpacking r-cran-cli (3.6.2-1) ... 383s Selecting previously unselected package r-cran-generics. 383s Preparing to unpack .../045-r-cran-generics_0.1.3-1_all.deb ... 383s Unpacking r-cran-generics (0.1.3-1) ... 383s Selecting previously unselected package r-cran-glue. 383s Preparing to unpack .../046-r-cran-glue_1.7.0-1_s390x.deb ... 383s Unpacking r-cran-glue (1.7.0-1) ... 383s Selecting previously unselected package r-cran-rlang. 383s Preparing to unpack .../047-r-cran-rlang_1.1.3-1_s390x.deb ... 383s Unpacking r-cran-rlang (1.1.3-1) ... 383s Selecting previously unselected package r-cran-lifecycle. 383s Preparing to unpack .../048-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 383s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 383s Selecting previously unselected package r-cran-magrittr. 383s Preparing to unpack .../049-r-cran-magrittr_2.0.3-1_s390x.deb ... 383s Unpacking r-cran-magrittr (2.0.3-1) ... 383s Selecting previously unselected package r-cran-fansi. 383s Preparing to unpack .../050-r-cran-fansi_1.0.5-1_s390x.deb ... 383s Unpacking r-cran-fansi (1.0.5-1) ... 383s Selecting previously unselected package r-cran-utf8. 383s Preparing to unpack .../051-r-cran-utf8_1.2.4-1_s390x.deb ... 383s Unpacking r-cran-utf8 (1.2.4-1) ... 383s Selecting previously unselected package r-cran-vctrs. 383s Preparing to unpack .../052-r-cran-vctrs_0.6.5-1_s390x.deb ... 383s Unpacking r-cran-vctrs (0.6.5-1) ... 383s Selecting previously unselected package r-cran-pillar. 383s Preparing to unpack .../053-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 383s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 383s Selecting previously unselected package r-cran-r6. 383s Preparing to unpack .../054-r-cran-r6_2.5.1-1_all.deb ... 383s Unpacking r-cran-r6 (2.5.1-1) ... 383s Selecting previously unselected package r-cran-pkgconfig. 383s Preparing to unpack .../055-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 383s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 383s Selecting previously unselected package r-cran-tibble. 383s Preparing to unpack .../056-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 383s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 384s Selecting previously unselected package r-cran-withr. 384s Preparing to unpack .../057-r-cran-withr_2.5.0-1_all.deb ... 384s Unpacking r-cran-withr (2.5.0-1) ... 384s Selecting previously unselected package r-cran-tidyselect. 384s Preparing to unpack .../058-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 384s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 384s Selecting previously unselected package r-cran-dplyr. 384s Preparing to unpack .../059-r-cran-dplyr_1.1.4-1_s390x.deb ... 384s Unpacking r-cran-dplyr (1.1.4-1) ... 384s Selecting previously unselected package r-cran-mass. 384s Preparing to unpack .../060-r-cran-mass_7.3-60.0.1-1_s390x.deb ... 384s Unpacking r-cran-mass (7.3-60.0.1-1) ... 384s Selecting previously unselected package r-cran-lattice. 384s Preparing to unpack .../061-r-cran-lattice_0.22-5-1_s390x.deb ... 384s Unpacking r-cran-lattice (0.22-5-1) ... 384s Selecting previously unselected package r-cran-matrix. 384s Preparing to unpack .../062-r-cran-matrix_1.6-5-1_s390x.deb ... 384s Unpacking r-cran-matrix (1.6-5-1) ... 384s Selecting previously unselected package r-cran-digest. 384s Preparing to unpack .../063-r-cran-digest_0.6.34-1_s390x.deb ... 384s Unpacking r-cran-digest (0.6.34-1) ... 384s Selecting previously unselected package r-cran-codetools. 384s Preparing to unpack .../064-r-cran-codetools_0.2-19-1_all.deb ... 384s Unpacking r-cran-codetools (0.2-19-1) ... 384s Selecting previously unselected package r-cran-globals. 384s Preparing to unpack .../065-r-cran-globals_0.16.2-1_all.deb ... 384s Unpacking r-cran-globals (0.16.2-1) ... 384s Selecting previously unselected package r-cran-listenv. 384s Preparing to unpack .../066-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 384s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 384s Selecting previously unselected package r-cran-parallelly. 384s Preparing to unpack .../067-r-cran-parallelly_1.36.0-1_all.deb ... 384s Unpacking r-cran-parallelly (1.36.0-1) ... 384s Selecting previously unselected package r-cran-future. 384s Preparing to unpack .../068-r-cran-future_1.33.1+dfsg-1_all.deb ... 384s Unpacking r-cran-future (1.33.1+dfsg-1) ... 384s Selecting previously unselected package r-cran-future.apply. 384s Preparing to unpack .../069-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 384s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 384s Selecting previously unselected package r-cran-gtable. 384s Preparing to unpack .../070-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 384s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 384s Selecting previously unselected package r-cran-isoband. 384s Preparing to unpack .../071-r-cran-isoband_0.2.7-1_s390x.deb ... 384s Unpacking r-cran-isoband (0.2.7-1) ... 384s Selecting previously unselected package r-cran-nlme. 384s Preparing to unpack .../072-r-cran-nlme_3.1.164-1_s390x.deb ... 384s Unpacking r-cran-nlme (3.1.164-1) ... 384s Selecting previously unselected package r-cran-mgcv. 384s Preparing to unpack .../073-r-cran-mgcv_1.9-1-1_s390x.deb ... 384s Unpacking r-cran-mgcv (1.9-1-1) ... 384s Selecting previously unselected package r-cran-farver. 384s Preparing to unpack .../074-r-cran-farver_2.1.1-1_s390x.deb ... 384s Unpacking r-cran-farver (2.1.1-1) ... 384s Selecting previously unselected package r-cran-labeling. 384s Preparing to unpack .../075-r-cran-labeling_0.4.3-1_all.deb ... 384s Unpacking r-cran-labeling (0.4.3-1) ... 384s Selecting previously unselected package r-cran-colorspace. 384s Preparing to unpack .../076-r-cran-colorspace_2.1-0+dfsg-1_s390x.deb ... 384s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 384s Selecting previously unselected package r-cran-munsell. 384s Preparing to unpack .../077-r-cran-munsell_0.5.0-2build1_all.deb ... 384s Unpacking r-cran-munsell (0.5.0-2build1) ... 384s Selecting previously unselected package r-cran-rcolorbrewer. 384s Preparing to unpack .../078-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 384s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 384s Selecting previously unselected package r-cran-viridislite. 384s Preparing to unpack .../079-r-cran-viridislite_0.4.2-2_all.deb ... 384s Unpacking 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up r-cran-tidyselect (1.2.0+dfsg-1) ... 391s Setting up r-cran-reshape2 (1.4.4-2build1) ... 391s Setting up r-cran-future.apply (1.11.1+dfsg-1) ... 391s Setting up r-cran-gridextra (2.3-3build1) ... 391s Setting up r-cran-scales (1.3.0-1) ... 391s Setting up r-cran-pkgbuild (1.4.3-1) ... 391s Setting up r-cran-dplyr (1.1.4-1) ... 391s Setting up r-cran-pkgload (1.3.4-1) ... 391s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 391s Setting up r-cran-rematch2 (2.1.2-2build1) ... 391s Setting up r-cran-waldo (0.5.2-1build1) ... 391s Setting up r-cran-sctransform (0.4.1-1) ... 391s Setting up r-cran-testthat (3.2.1-1) ... 391s Setting up autopkgtest-satdep (0) ... 391s Processing triggers for man-db (2.12.0-3) ... 391s Processing triggers for install-info (7.1-3) ... 391s Processing triggers for libc-bin (2.39-0ubuntu2) ... 398s (Reading database ... 66649 files and directories currently installed.) 398s Removing autopkgtest-satdep (0) ... 399s autopkgtest [10:14:06]: test run-unit-test: [----------------------- 399s BEGIN TEST testthat.R 400s 400s R version 4.3.2 (2023-10-31) -- "Eye Holes" 400s Copyright (C) 2023 The R Foundation for Statistical Computing 400s Platform: s390x-ibm-linux-gnu (64-bit) 400s 400s R is free software and comes with ABSOLUTELY NO WARRANTY. 400s You are welcome to redistribute it under certain conditions. 400s Type 'license()' or 'licence()' for distribution details. 400s 400s R is a collaborative project with many contributors. 400s Type 'contributors()' for more information and 400s 'citation()' on how to cite R or R packages in publications. 400s 400s Type 'demo()' for some demos, 'help()' for on-line help, or 400s 'help.start()' for an HTML browser interface to help. 400s Type 'q()' to quit R. 400s 400s > library(testthat) 400s > library(sctransform) 402s > 402s > test_check("sctransform") 402s [ FAIL 0 | WARN 0 | SKIP 10 | PASS 0 ] 402s 402s ══ Skipped tests (10) ══════════════════════════════════════════════════════════ 402s • On CRAN (10): 'test_denoising.R:4:3', 'test_generate.R:4:3', 402s 'test_utils.R:4:3', 'test_utils.R:48:3', 'test_utils.R:70:3', 402s 'test_utils.R:83:3', 'test_vst.R:4:3', 'test_vst.R:15:3', 'test_vst.R:31:3', 402s 'test_vst.R:46:3' 402s 402s [ FAIL 0 | WARN 0 | SKIP 10 | PASS 0 ] 402s > 402s autopkgtest [10:14:09]: test run-unit-test: -----------------------] 403s autopkgtest [10:14:10]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 403s run-unit-test PASS 403s autopkgtest [10:14:10]: test pkg-r-autopkgtest: preparing testbed 406s Reading package lists... 406s Building dependency tree... 406s Reading state information... 407s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 407s Starting 2 pkgProblemResolver with broken count: 0 407s Done 407s Done 407s Starting pkgProblemResolver with broken count: 0 407s Starting 2 pkgProblemResolver with broken count: 0 407s Done 407s The following additional packages will be installed: 407s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu 407s dctrl-tools g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 407s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 407s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8 407s libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 407s libcrypt-dev libgcc-13-dev libgfortran-13-dev libicu-dev libisl23 libitm1 407s libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblzma-dev 407s libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 407s libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev 407s libtirpc-dev libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf 407s pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 407s Suggested packages: 407s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 407s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 407s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 407s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev 407s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 407s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 407s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 407s texlive-latex-recommended texlive-latex-extra texinfo 407s Recommended packages: 407s bzip2-doc manpages manpages-dev libc-devtools libpng-tools 407s The following NEW packages will be installed: 407s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu 407s dctrl-tools g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 407s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 407s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8 407s libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 407s libcrypt-dev libgcc-13-dev libgfortran-13-dev libicu-dev libisl23 libitm1 407s libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblzma-dev 407s libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 407s libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev 407s libtirpc-dev libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf 407s pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 408s 0 upgraded, 58 newly installed, 0 to remove and 0 not upgraded. 408s 1 not fully installed or removed. 408s Need to get 86.2 MB of archives. 408s After this operation, 300 MB of additional disk space will be used. 408s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 408s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 408s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 408s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 408s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 408s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 408s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 408s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 408s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 408s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 408s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 409s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 409s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 409s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 409s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 409s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 409s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 409s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 410s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 410s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 410s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 412s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 412s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 412s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 412s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 412s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 414s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 414s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 414s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 414s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 414s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 414s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 415s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 415s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 415s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 415s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 415s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 416s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 416s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 416s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 416s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 416s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 416s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 416s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 416s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 416s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 416s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 416s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 416s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 416s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 417s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 417s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 418s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 418s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 418s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 418s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 418s Get:57 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 418s Get:58 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 419s Fetched 86.2 MB in 11s (8090 kB/s) 419s Selecting previously unselected package dctrl-tools. 419s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66649 files and directories currently installed.) 419s Preparing to unpack .../00-dctrl-tools_2.24-3build2_s390x.deb ... 419s Unpacking dctrl-tools (2.24-3build2) ... 419s Selecting previously unselected package libc-dev-bin. 419s Preparing to unpack .../01-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 419s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 419s Selecting previously unselected package linux-libc-dev:s390x. 419s Preparing to unpack .../02-linux-libc-dev_6.8.0-11.11_s390x.deb ... 419s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 419s Selecting previously unselected package libcrypt-dev:s390x. 419s Preparing to unpack .../03-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 419s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 419s Selecting previously unselected package libtirpc-dev:s390x. 419s Preparing to unpack .../04-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 419s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 419s Selecting previously unselected package libnsl-dev:s390x. 419s Preparing to unpack .../05-libnsl-dev_1.3.0-3_s390x.deb ... 419s Unpacking libnsl-dev:s390x (1.3.0-3) ... 419s Selecting previously unselected package rpcsvc-proto. 419s Preparing to unpack .../06-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 419s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 419s Selecting previously unselected package libc6-dev:s390x. 419s Preparing to unpack .../07-libc6-dev_2.39-0ubuntu2_s390x.deb ... 419s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 419s Selecting previously unselected package libisl23:s390x. 419s Preparing to unpack .../08-libisl23_0.26-3_s390x.deb ... 419s Unpacking libisl23:s390x (0.26-3) ... 419s Selecting previously unselected package libmpc3:s390x. 419s Preparing to unpack .../09-libmpc3_1.3.1-1_s390x.deb ... 419s Unpacking libmpc3:s390x (1.3.1-1) ... 419s Selecting previously unselected package cpp-13-s390x-linux-gnu. 419s Preparing to unpack .../10-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 419s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 419s Selecting previously unselected package cpp-13. 419s Preparing to unpack .../11-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 419s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 419s Selecting previously unselected package cpp-s390x-linux-gnu. 419s Preparing to unpack .../12-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 419s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 419s Selecting previously unselected package cpp. 419s Preparing to unpack .../13-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 419s Unpacking cpp (4:13.2.0-7ubuntu1) ... 419s Selecting previously unselected package libcc1-0:s390x. 419s Preparing to unpack .../14-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 419s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 419s Selecting previously unselected package libitm1:s390x. 419s Preparing to unpack .../15-libitm1_14-20240303-1ubuntu1_s390x.deb ... 419s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 419s Selecting previously unselected package libatomic1:s390x. 419s Preparing to unpack .../16-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 419s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 419s Selecting previously unselected package libasan8:s390x. 419s Preparing to unpack .../17-libasan8_14-20240303-1ubuntu1_s390x.deb ... 419s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 419s Selecting previously unselected package libubsan1:s390x. 419s Preparing to unpack .../18-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 419s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 419s Selecting previously unselected package libgcc-13-dev:s390x. 419s Preparing to unpack .../19-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 419s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 419s Selecting previously unselected package gcc-13-s390x-linux-gnu. 419s Preparing to unpack .../20-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 419s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 420s Selecting previously unselected package gcc-13. 420s Preparing to unpack .../21-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 420s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 420s Selecting previously unselected package gcc-s390x-linux-gnu. 420s Preparing to unpack .../22-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 420s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 420s Selecting previously unselected package gcc. 420s Preparing to unpack .../23-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 420s Unpacking gcc (4:13.2.0-7ubuntu1) ... 420s Selecting previously unselected package libstdc++-13-dev:s390x. 420s Preparing to unpack .../24-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 420s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 420s Selecting previously unselected package g++-13-s390x-linux-gnu. 420s Preparing to unpack .../25-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 420s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 420s Selecting previously unselected package g++-13. 420s Preparing to unpack .../26-g++-13_13.2.0-17ubuntu2_s390x.deb ... 420s Unpacking g++-13 (13.2.0-17ubuntu2) ... 420s Selecting previously unselected package g++-s390x-linux-gnu. 420s Preparing to unpack .../27-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 420s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 420s Selecting previously unselected package g++. 420s Preparing to unpack .../28-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 420s Unpacking g++ (4:13.2.0-7ubuntu1) ... 420s Selecting previously unselected package build-essential. 420s Preparing to unpack .../29-build-essential_12.10ubuntu1_s390x.deb ... 420s Unpacking build-essential (12.10ubuntu1) ... 420s Selecting previously unselected package libgfortran-13-dev:s390x. 420s Preparing to unpack .../30-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 420s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 421s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 421s Preparing to unpack .../31-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 421s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 421s Selecting previously unselected package gfortran-13. 421s Preparing to unpack .../32-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 421s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 421s Selecting previously unselected package gfortran-s390x-linux-gnu. 421s Preparing to unpack .../33-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 421s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 421s Selecting previously unselected package gfortran. 421s Preparing to unpack .../34-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 421s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 421s Selecting previously unselected package libblas-dev:s390x. 421s Preparing to unpack .../35-libblas-dev_3.12.0-3_s390x.deb ... 421s Unpacking libblas-dev:s390x (3.12.0-3) ... 421s Selecting previously unselected package liblapack-dev:s390x. 421s Preparing to unpack .../36-liblapack-dev_3.12.0-3_s390x.deb ... 421s Unpacking liblapack-dev:s390x (3.12.0-3) ... 421s Selecting previously unselected package libncurses-dev:s390x. 421s Preparing to unpack .../37-libncurses-dev_6.4+20240113-1ubuntu1_s390x.deb ... 421s Unpacking libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 421s Selecting previously unselected package libreadline-dev:s390x. 421s Preparing to unpack .../38-libreadline-dev_8.2-3_s390x.deb ... 421s Unpacking libreadline-dev:s390x (8.2-3) ... 421s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 421s Preparing to unpack .../39-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 421s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 421s Selecting previously unselected package libjpeg8-dev:s390x. 421s Preparing to unpack .../40-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 421s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 421s Selecting previously unselected package libjpeg-dev:s390x. 421s Preparing to unpack .../41-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 421s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 421s Selecting previously unselected package libpcre2-16-0:s390x. 421s Preparing to unpack .../42-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ... 421s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ... 421s Selecting previously unselected package libpcre2-32-0:s390x. 421s Preparing to unpack .../43-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ... 421s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ... 421s Selecting previously unselected package libpcre2-posix3:s390x. 421s Preparing to unpack .../44-libpcre2-posix3_10.42-4ubuntu1_s390x.deb ... 421s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ... 421s Selecting previously unselected package libpcre2-dev:s390x. 421s Preparing to unpack .../45-libpcre2-dev_10.42-4ubuntu1_s390x.deb ... 421s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ... 421s Selecting previously unselected package zlib1g-dev:s390x. 421s Preparing to unpack .../46-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 421s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 421s Selecting previously unselected package libpng-dev:s390x. 421s Preparing to unpack .../47-libpng-dev_1.6.43-1_s390x.deb ... 421s Unpacking libpng-dev:s390x (1.6.43-1) ... 421s Selecting previously unselected package libbz2-dev:s390x. 421s Preparing to unpack .../48-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 421s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 421s Selecting previously unselected package liblzma-dev:s390x. 421s Preparing to unpack .../49-liblzma-dev_5.4.5-0.3_s390x.deb ... 421s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 421s Selecting previously unselected package icu-devtools. 421s Preparing to unpack .../50-icu-devtools_74.2-1ubuntu1_s390x.deb ... 421s Unpacking icu-devtools (74.2-1ubuntu1) ... 421s Selecting previously unselected package libicu-dev:s390x. 421s Preparing to unpack .../51-libicu-dev_74.2-1ubuntu1_s390x.deb ... 421s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 422s Selecting previously unselected package libpkgconf3:s390x. 422s Preparing to unpack .../52-libpkgconf3_1.8.1-2_s390x.deb ... 422s Unpacking libpkgconf3:s390x (1.8.1-2) ... 422s Selecting previously unselected package pkgconf-bin. 422s Preparing to unpack .../53-pkgconf-bin_1.8.1-2_s390x.deb ... 422s Unpacking pkgconf-bin (1.8.1-2) ... 422s Selecting previously unselected package pkgconf:s390x. 422s Preparing to unpack .../54-pkgconf_1.8.1-2_s390x.deb ... 422s Unpacking pkgconf:s390x (1.8.1-2) ... 422s Selecting previously unselected package pkg-config:s390x. 422s Preparing to unpack .../55-pkg-config_1.8.1-2_s390x.deb ... 422s Unpacking pkg-config:s390x (1.8.1-2) ... 422s Selecting previously unselected package r-base-dev. 422s Preparing to unpack .../56-r-base-dev_4.3.2-1build1_all.deb ... 422s Unpacking r-base-dev (4.3.2-1build1) ... 422s Selecting previously unselected package pkg-r-autopkgtest. 422s Preparing to unpack .../57-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 422s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 422s Setting up linux-libc-dev:s390x (6.8.0-11.11) ... 422s Setting up libpcre2-16-0:s390x (10.42-4ubuntu1) ... 422s Setting up libpcre2-32-0:s390x (10.42-4ubuntu1) ... 422s Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ... 422s Setting up libpkgconf3:s390x (1.8.1-2) ... 422s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 422s Setting up libmpc3:s390x (1.3.1-1) ... 422s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ... 422s Setting up icu-devtools (74.2-1ubuntu1) ... 422s Setting up pkgconf-bin (1.8.1-2) ... 422s Setting up liblzma-dev:s390x (5.4.5-0.3) ... 422s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ... 422s Setting up libpcre2-posix3:s390x (10.42-4ubuntu1) ... 422s Setting up libnsl-dev:s390x (1.3.0-3) ... 422s Setting up libcrypt-dev:s390x (1:4.4.36-4) ... 422s Setting up libasan8:s390x (14-20240303-1ubuntu1) ... 422s Setting up libisl23:s390x (0.26-3) ... 422s Setting up libc-dev-bin (2.39-0ubuntu2) ... 422s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ... 422s Setting up libblas-dev:s390x (3.12.0-3) ... 422s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 422s Setting up dctrl-tools (2.24-3build2) ... 422s Setting up libitm1:s390x (14-20240303-1ubuntu1) ... 422s Setting up pkgconf:s390x (1.8.1-2) ... 422s Setting up cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 422s Setting up liblapack-dev:s390x (3.12.0-3) ... 422s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 422s Setting up pkg-config:s390x (1.8.1-2) ... 422s Setting up libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 422s Setting up libc6-dev:s390x (2.39-0ubuntu2) ... 422s Setting up libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 422s Setting up libicu-dev:s390x (74.2-1ubuntu1) ... 422s Setting up libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 422s Setting up libbz2-dev:s390x (1.0.8-5ubuntu1) ... 422s Setting up libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 422s Setting up libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 422s Setting up libpcre2-dev:s390x (10.42-4ubuntu1) ... 422s Setting up cpp-13 (13.2.0-17ubuntu2) ... 422s Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 422s Setting up libreadline-dev:s390x (8.2-3) ... 422s Setting up gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 422s Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 422s Setting up g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 422s Setting up gcc-13 (13.2.0-17ubuntu2) ... 422s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 422s Setting up cpp (4:13.2.0-7ubuntu1) ... 422s Setting up gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 422s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 422s Setting up g++-13 (13.2.0-17ubuntu2) ... 422s Setting up gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 422s Setting up libpng-dev:s390x (1.6.43-1) ... 422s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 422s Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 422s Setting up gcc (4:13.2.0-7ubuntu1) ... 422s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 422s Setting up g++ (4:13.2.0-7ubuntu1) ... 422s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 422s Setting up build-essential (12.10ubuntu1) ... 422s Setting up gfortran (4:13.2.0-7ubuntu1) ... 422s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 422s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 422s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 422s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 422s Setting up r-base-dev (4.3.2-1build1) ... 422s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 422s Setting up autopkgtest-satdep (0) ... 422s Processing triggers for man-db (2.12.0-3) ... 423s Processing triggers for install-info (7.1-3) ... 423s Processing triggers for libc-bin (2.39-0ubuntu2) ... 425s (Reading database ... 70204 files and directories currently installed.) 425s Removing autopkgtest-satdep (0) ... 427s autopkgtest [10:14:34]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 427s autopkgtest [10:14:34]: test pkg-r-autopkgtest: [----------------------- 427s Test: Try to load the R library sctransform 427s 427s R version 4.3.2 (2023-10-31) -- "Eye Holes" 427s Copyright (C) 2023 The R Foundation for Statistical Computing 427s Platform: s390x-ibm-linux-gnu (64-bit) 427s 427s R is free software and comes with ABSOLUTELY NO WARRANTY. 427s You are welcome to redistribute it under certain conditions. 427s Type 'license()' or 'licence()' for distribution details. 427s 427s R is a collaborative project with many contributors. 427s Type 'contributors()' for more information and 427s 'citation()' on how to cite R or R packages in publications. 427s 427s Type 'demo()' for some demos, 'help()' for on-line help, or 427s 'help.start()' for an HTML browser interface to help. 427s Type 'q()' to quit R. 427s 427s > library('sctransform') 429s > 429s > 429s Other tests are currently unsupported! 429s They will be progressively added. 429s autopkgtest [10:14:36]: test pkg-r-autopkgtest: -----------------------] 430s pkg-r-autopkgtest PASS 430s autopkgtest [10:14:37]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 430s autopkgtest [10:14:37]: @@@@@@@@@@@@@@@@@@@@ summary 430s run-unit-test PASS 430s pkg-r-autopkgtest PASS 451s Creating nova instance adt-noble-s390x-r-cran-sctransform-20240312-100727-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240309.img (UUID 15f62ec0-c004-41c2-ab66-72a4ef6796cc)...