0s autopkgtest [22:09:40]: starting date and time: 2024-04-08 22:09:40+0000 0s autopkgtest [22:09:40]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [22:09:40]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6d2sv0l4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:curl --apt-upgrade r-bioc-variantannotation --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=curl/8.5.0-2ubuntu10 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-9.secgroup --name adt-noble-s390x-r-bioc-variantannotation-20240408-220940-juju-7f2275-prod-proposed-migration-environment-3-626ac208-19b9-42ae-9d3b-bb1e865d3e44 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 325s autopkgtest [22:15:05]: testbed dpkg architecture: s390x 325s autopkgtest [22:15:05]: testbed apt version: 2.7.14build2 325s autopkgtest [22:15:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 326s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 326s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [831 kB] 327s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [10.6 kB] 327s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [358 kB] 327s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4680 B] 327s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [311 kB] 327s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 327s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1192 B] 327s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 327s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [909 kB] 327s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 327s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [5120 B] 327s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 328s Fetched 2558 kB in 1s (2094 kB/s) 328s Reading package lists... 331s Reading package lists... 331s Building dependency tree... 331s Reading state information... 331s Calculating upgrade... 331s The following packages will be upgraded: 331s bash curl libcurl3t64-gnutls libcurl4t64 libpython3.12-minimal 331s libpython3.12-stdlib python3-gi python3.12 python3.12-minimal 331s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 331s Need to get 8027 kB of archives. 331s After this operation, 280 kB disk space will be freed. 331s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x bash s390x 5.2.21-2ubuntu4 [845 kB] 332s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x python3.12 s390x 3.12.2-5ubuntu3 [644 kB] 332s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12-stdlib s390x 3.12.2-5ubuntu3 [2066 kB] 332s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x python3.12-minimal s390x 3.12.2-5ubuntu3 [2459 kB] 332s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12-minimal s390x 3.12.2-5ubuntu3 [830 kB] 332s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x python3-gi s390x 3.48.2-1 [236 kB] 332s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu10 [227 kB] 332s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu10 [363 kB] 332s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl3t64-gnutls s390x 8.5.0-2ubuntu10 [356 kB] 332s Fetched 8027 kB in 1s (9539 kB/s) 332s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78676 files and directories currently installed.) 332s Preparing to unpack .../bash_5.2.21-2ubuntu4_s390x.deb ... 332s Unpacking bash (5.2.21-2ubuntu4) over (5.2.21-2ubuntu2) ... 332s Setting up bash (5.2.21-2ubuntu4) ... 332s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 332s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78676 files and directories currently installed.) 332s Preparing to unpack .../0-python3.12_3.12.2-5ubuntu3_s390x.deb ... 333s Unpacking python3.12 (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 333s Preparing to unpack .../1-libpython3.12-stdlib_3.12.2-5ubuntu3_s390x.deb ... 333s Unpacking libpython3.12-stdlib:s390x (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 333s Preparing to unpack .../2-python3.12-minimal_3.12.2-5ubuntu3_s390x.deb ... 333s Unpacking python3.12-minimal (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 333s Preparing to unpack .../3-libpython3.12-minimal_3.12.2-5ubuntu3_s390x.deb ... 333s Unpacking libpython3.12-minimal:s390x (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 333s Preparing to unpack .../4-python3-gi_3.48.2-1_s390x.deb ... 333s Unpacking python3-gi (3.48.2-1) over (3.48.1-1build1) ... 333s Preparing to unpack .../5-curl_8.5.0-2ubuntu10_s390x.deb ... 333s Unpacking curl (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 333s Preparing to unpack .../6-libcurl4t64_8.5.0-2ubuntu10_s390x.deb ... 333s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 333s Preparing to unpack .../7-libcurl3t64-gnutls_8.5.0-2ubuntu10_s390x.deb ... 333s Unpacking libcurl3t64-gnutls:s390x (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 333s Setting up libcurl4t64:s390x (8.5.0-2ubuntu10) ... 333s Setting up libpython3.12-minimal:s390x (3.12.2-5ubuntu3) ... 333s Setting up libcurl3t64-gnutls:s390x (8.5.0-2ubuntu10) ... 333s Setting up python3-gi (3.48.2-1) ... 333s Setting up curl (8.5.0-2ubuntu10) ... 333s Setting up python3.12-minimal (3.12.2-5ubuntu3) ... 334s Setting up libpython3.12-stdlib:s390x (3.12.2-5ubuntu3) ... 334s Setting up python3.12 (3.12.2-5ubuntu3) ... 335s Processing triggers for systemd (255.4-1ubuntu7) ... 336s Processing triggers for man-db (2.12.0-4build1) ... 336s Processing triggers for debianutils (5.17build1) ... 336s Processing triggers for install-info (7.1-3build2) ... 336s Processing triggers for libc-bin (2.39-0ubuntu8) ... 336s Reading package lists... 336s Building dependency tree... 336s Reading state information... 337s The following packages will be REMOVED: 337s linux-headers-6.8.0-11* linux-headers-6.8.0-11-generic* 337s linux-image-6.8.0-11-generic* linux-modules-6.8.0-11-generic* 337s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 337s After this operation, 136 MB disk space will be freed. 337s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78677 files and directories currently installed.) 337s Removing linux-headers-6.8.0-11-generic (6.8.0-11.11) ... 337s Removing linux-headers-6.8.0-11 (6.8.0-11.11) ... 338s Removing linux-image-6.8.0-11-generic (6.8.0-11.11) ... 338s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.8.0-22-generic 338s I: /boot/initrd.img.old is now a symlink to initrd.img-6.8.0-22-generic 338s /etc/kernel/postrm.d/initramfs-tools: 338s update-initramfs: Deleting /boot/initrd.img-6.8.0-11-generic 338s /etc/kernel/postrm.d/zz-zipl: 338s Using config file '/etc/zipl.conf' 338s Building bootmap in '/boot' 338s Adding IPL section 'ubuntu' (default) 338s Preparing boot device for LD-IPL: vda (0000). 338s Done. 338s Removing linux-modules-6.8.0-11-generic (6.8.0-11.11) ... 339s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54701 files and directories currently installed.) 339s Purging configuration files for linux-image-6.8.0-11-generic (6.8.0-11.11) ... 339s Purging configuration files for linux-modules-6.8.0-11-generic (6.8.0-11.11) ... 339s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 339s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 339s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 339s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 340s Reading package lists... 340s Reading package lists... 341s Building dependency tree... 341s Reading state information... 341s Calculating upgrade... 341s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 341s Reading package lists... 341s Building dependency tree... 341s Reading state information... 341s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 341s autopkgtest [22:15:21]: rebooting testbed after setup commands that affected boot 373s autopkgtest [22:15:53]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr 4 21:54:17 UTC 2024 375s autopkgtest [22:15:55]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-variantannotation 377s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1build1 (dsc) [2706 B] 377s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1build1 (tar) [1887 kB] 377s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1build1 (diff) [8024 B] 377s gpgv: Signature made Sat Mar 16 06:57:56 2024 UTC 377s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 377s gpgv: issuer "steve.langasek@ubuntu.com" 377s gpgv: Can't check signature: No public key 377s dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.48.1-1build1.dsc: no acceptable signature found 377s autopkgtest [22:15:57]: testing package r-bioc-variantannotation version 1.48.1-1build1 378s autopkgtest [22:15:58]: build not needed 381s autopkgtest [22:16:01]: test pkg-r-autopkgtest: preparing testbed 384s Reading package lists... 384s Building dependency tree... 384s Reading state information... 384s Starting pkgProblemResolver with broken count: 0 384s Starting 2 pkgProblemResolver with broken count: 0 384s Done 385s The following additional packages will be installed: 385s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu 385s dctrl-tools fontconfig fonts-font-awesome fonts-glyphicons-halflings 385s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-s390x-linux-gnu 385s g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu 385s gfortran gfortran-13 gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu 385s icu-devtools javascript-common libasan8 libatomic1 libbibtex-parser-perl 385s libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev libcairo2 385s libcc1-0 libdatrie1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 385s libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl libisl23 385s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap 385s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 385s libjs-jquery-datatables libjs-jquery-datatables-extensions 385s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 385s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 385s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 385s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 385s liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 385s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 385s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 385s libpotrace0 libptexenc1 libreadline-dev libsm6 libstdc++-13-dev libsynctex2 385s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtk8.6 libubsan1 385s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxrender1 385s libxss1 libxt6t64 libzzip-0-13t64 node-bootstrap-sass node-html5shiv 385s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 385s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationhub 385s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 385s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 385s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 385s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 385s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 385s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 385s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 385s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 385s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 385s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 385s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 385s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 385s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 385s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 386s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 386s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 386s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 386s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 386s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 386s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 386s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 386s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 386s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 386s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 386s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 386s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 386s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 386s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 386s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 386s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 386s r-cran-xml2 r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 386s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 386s xdg-utils zip zlib1g-dev 386s Suggested packages: 386s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 386s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 386s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 386s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 386s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 386s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 386s libboost-context1.83-dev libboost-contract1.83-dev 386s libboost-coroutine1.83-dev libboost-date-time1.83-dev 386s libboost-exception1.83-dev libboost-fiber1.83-dev 386s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 386s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 386s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 386s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 386s libboost-numpy1.83-dev libboost-program-options1.83-dev 386s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 386s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 386s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 386s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 386s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 386s icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 386s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 386s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 386s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 386s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 386s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 386s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 386s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-ensembldb 386s r-bioc-experimenthub r-bioc-all r-cran-testthat r-bioc-affy r-bioc-deseq2 386s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 386s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 386s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 386s r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 386s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-dexseq 386s r-bioc-sparsematrixstats r-bioc-limma r-cran-hexbin r-bioc-rhdf5 386s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-kernsmooth r-cran-kernlab 386s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis 386s r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-magick r-cran-sf 386s r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins 386s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 386s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 386s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 386s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 386s texlive-latex-base-doc wp2latex 386s Recommended packages: 386s bzip2-doc node-jquery libpng-tools r-recommended r-doc-html r-cran-testthat 386s r-cran-remotes r-cran-downlit r-cran-rstudioapi r-cran-miniui 386s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-thematic 386s r-cran-callr r-cran-covr r-cran-mockery r-cran-processx r-cran-ps 386s r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio r-cran-decor 386s r-cran-desc r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-rpostgresql 386s r-cran-broom r-cran-rmysql r-cran-future w3m | www-browser r-cran-unitizer 386s r-cran-rsvg r-cran-pkgload r-cran-hexbin r-cran-hmisc r-cran-mapproj 386s r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg 386s r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-waldo 386s r-cran-cairo r-cran-markdown r-cran-jpeg r-cran-readr r-cran-r.rsp 386s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 386s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 386s r-cran-sodium r-cran-lubridate r-cran-usethis r-cran-dygraphs r-cran-dbitest 386s r-cran-gert r-cran-gh r-cran-rvest r-cran-dichromat r-cran-data.table 386s r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 386s lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 386s x11-utils x11-xserver-utils 386s The following NEW packages will be installed: 386s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 386s cpp-s390x-linux-gnu dctrl-tools fontconfig fonts-font-awesome 386s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 386s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 386s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 386s gfortran-s390x-linux-gnu icu-devtools javascript-common libasan8 libatomic1 386s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 386s libbz2-dev libcairo2 libcc1-0 libdatrie1 libgcc-13-dev libgfortran-13-dev 386s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev 386s libio-string-perl libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev 386s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 386s libjs-highlight.js libjs-jquery libjs-jquery-datatables 386s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 386s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 386s libjs-popper.js libjs-prettify libjs-sifter.js 386s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 386s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 386s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 386s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 386s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 386s libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 386s libthai-data libthai0 libtk8.6 libubsan1 libxaw7 libxcb-render0 libxcb-shm0 386s libxft2 libxi6 libxmu6 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 386s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 386s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 386s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 386s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 386s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 386s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 386s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 386s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 386s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 386s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 386s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 386s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 386s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 386s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 386s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 386s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 386s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 386s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 386s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 386s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 386s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 386s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 386s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 386s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 386s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 386s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 386s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 386s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 386s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 386s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 386s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 386s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 386s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 386s r-cran-xml2 r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 386s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 386s xdg-utils zip zlib1g-dev 386s 0 upgraded, 277 newly installed, 0 to remove and 0 not upgraded. 386s Need to get 458 MB/458 MB of archives. 386s After this operation, 1426 MB of additional disk space will be used. 386s Get:1 /tmp/autopkgtest.k1zNhW/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [776 B] 386s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 386s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 386s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [9936 kB] 386s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-23ubuntu3 [1026 B] 386s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 386s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 386s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240330-1ubuntu2 [49.8 kB] 386s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240330-1ubuntu2 [151 kB] 386s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240330-1ubuntu2 [31.1 kB] 386s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240330-1ubuntu2 [9386 B] 386s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240330-1ubuntu2 [2994 kB] 386s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240330-1ubuntu2 [1186 kB] 386s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-23ubuntu3 [1003 kB] 386s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [19.1 MB] 387s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-23ubuntu3 [469 kB] 387s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 387s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 387s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-23ubuntu3 [2494 kB] 388s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [11.3 MB] 389s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-23ubuntu3 [14.5 kB] 389s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 389s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 389s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 389s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 389s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1.1ubuntu2 [191 kB] 389s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 389s Get:28 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 389s Get:29 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 389s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 389s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240330-1ubuntu2 [598 kB] 389s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-23ubuntu3 [623 kB] 389s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [10.4 MB] 390s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-23ubuntu3 [10.9 kB] 390s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 390s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 390s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 390s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 390s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 390s Get:40 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 390s Get:41 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 390s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 390s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 390s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2.1ubuntu3 [10.7 MB] 391s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 391s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 391s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 391s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 391s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 391s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 391s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-3 [589 kB] 391s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 391s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 391s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2build2 [515 kB] 391s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 391s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 391s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 392s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 392s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 392s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 392s Get:61 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 392s Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 392s Get:63 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 392s Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 392s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 392s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 392s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 392s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 392s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 392s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 392s Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 392s Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 392s Get:73 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 392s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 392s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 392s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 392s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9build3 [66.6 kB] 392s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 393s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 393s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3build2 [179 kB] 393s Get:81 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 393s Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 393s Get:83 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 393s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.52.1+ds-1build1 [243 kB] 393s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.52.1+ds-1build1 [44.0 kB] 393s Get:86 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.52.1+ds-1build1 [28.8 kB] 393s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 393s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 393s Get:89 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 393s Get:90 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 393s Get:91 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 393s Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 393s Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 393s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3.1ubuntu2 [904 kB] 393s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-5build1 [277 kB] 393s Get:96 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 393s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9build3 [41.6 kB] 393s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-4build1 [189 kB] 393s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 393s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9build3 [65.1 kB] 393s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.14+dfsg-1build1 [1038 kB] 394s Get:102 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 394s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9build3 [132 kB] 394s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 394s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 394s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.14-1build1 [833 kB] 394s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 394s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB] 394s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1build2 [204 kB] 394s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 394s Get:111 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13t64 s390x 0.13.72+dfsg.1-1.2build1 [28.6 kB] 394s Get:112 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 394s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 394s Get:114 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 394s Get:115 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 394s Get:116 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 396s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 396s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 396s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 396s Get:120 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 396s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 396s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 396s Get:123 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.3-2build2 [27.1 MB] 397s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.6.1+really5.4.5-1 [184 kB] 397s Get:125 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.3-2build2 [4334 B] 397s Get:126 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 397s Get:127 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 397s Get:128 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 397s Get:129 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 398s Get:130 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 398s Get:131 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 398s Get:132 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 398s Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 398s Get:134 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 398s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 398s Get:136 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 398s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 398s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 398s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 398s Get:140 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 398s Get:141 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 398s Get:142 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 398s Get:143 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 398s Get:144 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 398s Get:145 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 398s Get:146 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 398s Get:147 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1build2 [177 kB] 398s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 398s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 398s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 398s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 398s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2build2 [403 kB] 398s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 398s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 398s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB] 398s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 398s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 398s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 398s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1build2 [794 kB] 398s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 399s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 399s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 399s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 399s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 399s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 399s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 399s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 399s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 400s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 400s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 400s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 400s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 400s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 400s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 400s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 400s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 400s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 400s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 400s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 400s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 400s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 400s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 400s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocversion all 3.18.1-1 [11.0 kB] 400s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 400s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 400s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 400s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 400s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 400s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 400s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 400s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1build2 [519 kB] 400s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 400s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 400s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 400s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 400s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 400s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 400s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 400s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 400s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 400s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1build2 [230 kB] 400s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 400s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 400s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 400s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 401s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 401s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 401s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 401s Get:209 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 401s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 401s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 401s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 401s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 401s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 401s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lazyeval s390x 0.2.2-1build1 [143 kB] 401s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 401s Get:217 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dt all 0.31+dfsg-1 [265 kB] 401s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 401s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 401s Get:220 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 401s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 401s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 401s Get:223 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 401s Get:224 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 401s Get:225 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 402s Get:226 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 402s Get:227 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 402s Get:228 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 402s Get:229 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 402s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 402s Get:231 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 402s Get:232 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9build3 [9354 kB] 402s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 403s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 403s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 407s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 407s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 407s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 407s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 407s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 407s Get:241 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 407s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 407s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 407s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-3build2 [1409 kB] 407s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1build1 [3700 kB] 407s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 407s Get:247 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 407s Get:248 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 407s Get:249 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 407s Get:250 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 407s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 407s Get:252 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 407s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 407s Get:254 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 408s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 408s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 408s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 408s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 408s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-bsgenome all 1.70.2-1 [6975 kB] 408s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1823 kB] 408s Get:261 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-survival s390x 3.5-8-1 [6161 kB] 409s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-snpstats s390x 1.52.0+dfsg-1 [7253 kB] 409s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-variantannotation s390x 1.48.1-1build1 [3578 kB] 409s Get:264 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-colorspace s390x 2.1-0+dfsg-1 [1540 kB] 409s Get:265 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-farver s390x 2.1.1-1 [1347 kB] 409s Get:266 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 409s Get:267 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB] 409s Get:268 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 409s Get:269 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-nlme s390x 3.1.164-1 [2268 kB] 409s Get:270 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 410s Get:271 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB] 410s Get:272 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-munsell all 0.5.0-2build1 [208 kB] 410s Get:273 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 410s Get:274 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB] 410s Get:275 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-scales all 1.3.0-1 [603 kB] 410s Get:276 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 410s Get:277 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-runit all 0.4.33-1 [377 kB] 411s Preconfiguring packages ... 411s Fetched 458 MB in 25s (18.2 MB/s) 411s Selecting previously unselected package libisl23:s390x. 411s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54700 files and directories currently installed.) 411s Preparing to unpack .../000-libisl23_0.26-3_s390x.deb ... 411s Unpacking libisl23:s390x (0.26-3) ... 411s Selecting previously unselected package libmpc3:s390x. 411s Preparing to unpack .../001-libmpc3_1.3.1-1_s390x.deb ... 411s Unpacking libmpc3:s390x (1.3.1-1) ... 411s Selecting previously unselected package cpp-13-s390x-linux-gnu. 411s Preparing to unpack .../002-cpp-13-s390x-linux-gnu_13.2.0-23ubuntu3_s390x.deb ... 411s Unpacking cpp-13-s390x-linux-gnu (13.2.0-23ubuntu3) ... 411s Selecting previously unselected package cpp-13. 411s Preparing to unpack .../003-cpp-13_13.2.0-23ubuntu3_s390x.deb ... 411s Unpacking cpp-13 (13.2.0-23ubuntu3) ... 411s Selecting previously unselected package cpp-s390x-linux-gnu. 411s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 411s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 411s Selecting previously unselected package cpp. 411s Preparing to unpack .../005-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 411s Unpacking cpp (4:13.2.0-7ubuntu1) ... 411s Selecting previously unselected package libcc1-0:s390x. 411s Preparing to unpack .../006-libcc1-0_14-20240330-1ubuntu2_s390x.deb ... 411s Unpacking libcc1-0:s390x (14-20240330-1ubuntu2) ... 411s Selecting previously unselected package libgomp1:s390x. 411s Preparing to unpack .../007-libgomp1_14-20240330-1ubuntu2_s390x.deb ... 411s Unpacking libgomp1:s390x (14-20240330-1ubuntu2) ... 411s Selecting previously unselected package libitm1:s390x. 411s Preparing to unpack .../008-libitm1_14-20240330-1ubuntu2_s390x.deb ... 411s Unpacking libitm1:s390x (14-20240330-1ubuntu2) ... 411s Selecting previously unselected package libatomic1:s390x. 411s Preparing to unpack .../009-libatomic1_14-20240330-1ubuntu2_s390x.deb ... 411s Unpacking libatomic1:s390x (14-20240330-1ubuntu2) ... 411s Selecting previously unselected package libasan8:s390x. 411s Preparing to unpack .../010-libasan8_14-20240330-1ubuntu2_s390x.deb ... 411s Unpacking libasan8:s390x (14-20240330-1ubuntu2) ... 411s Selecting previously unselected package libubsan1:s390x. 411s Preparing to unpack .../011-libubsan1_14-20240330-1ubuntu2_s390x.deb ... 411s Unpacking libubsan1:s390x (14-20240330-1ubuntu2) ... 411s Selecting previously unselected package libgcc-13-dev:s390x. 411s Preparing to unpack .../012-libgcc-13-dev_13.2.0-23ubuntu3_s390x.deb ... 411s Unpacking libgcc-13-dev:s390x (13.2.0-23ubuntu3) ... 411s Selecting previously unselected package gcc-13-s390x-linux-gnu. 411s Preparing to unpack .../013-gcc-13-s390x-linux-gnu_13.2.0-23ubuntu3_s390x.deb ... 411s Unpacking gcc-13-s390x-linux-gnu (13.2.0-23ubuntu3) ... 412s Selecting previously unselected package gcc-13. 412s Preparing to unpack .../014-gcc-13_13.2.0-23ubuntu3_s390x.deb ... 412s Unpacking gcc-13 (13.2.0-23ubuntu3) ... 412s Selecting previously unselected package gcc-s390x-linux-gnu. 412s Preparing to unpack .../015-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 412s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 412s Selecting previously unselected package gcc. 412s Preparing to unpack .../016-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 412s Unpacking gcc (4:13.2.0-7ubuntu1) ... 412s Selecting previously unselected package libstdc++-13-dev:s390x. 412s Preparing to unpack .../017-libstdc++-13-dev_13.2.0-23ubuntu3_s390x.deb ... 412s Unpacking libstdc++-13-dev:s390x (13.2.0-23ubuntu3) ... 412s Selecting previously unselected package g++-13-s390x-linux-gnu. 412s Preparing to unpack .../018-g++-13-s390x-linux-gnu_13.2.0-23ubuntu3_s390x.deb ... 412s Unpacking g++-13-s390x-linux-gnu (13.2.0-23ubuntu3) ... 412s Selecting previously unselected package g++-13. 412s Preparing to unpack .../019-g++-13_13.2.0-23ubuntu3_s390x.deb ... 412s Unpacking g++-13 (13.2.0-23ubuntu3) ... 412s Selecting previously unselected package g++-s390x-linux-gnu. 412s Preparing to unpack .../020-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 412s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 412s Selecting previously unselected package g++. 412s Preparing to unpack .../021-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 412s Unpacking g++ (4:13.2.0-7ubuntu1) ... 412s Selecting previously unselected package build-essential. 412s Preparing to unpack .../022-build-essential_12.10ubuntu1_s390x.deb ... 412s Unpacking build-essential (12.10ubuntu1) ... 412s Selecting previously unselected package dctrl-tools. 412s Preparing to unpack .../023-dctrl-tools_2.24-3build2_s390x.deb ... 412s Unpacking dctrl-tools (2.24-3build2) ... 412s Selecting previously unselected package fontconfig. 412s Preparing to unpack .../024-fontconfig_2.15.0-1.1ubuntu2_s390x.deb ... 412s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 412s Selecting previously unselected package fonts-font-awesome. 412s Preparing to unpack .../025-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 412s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 412s Selecting previously unselected package fonts-glyphicons-halflings. 412s Preparing to unpack .../026-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 412s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 412s Selecting previously unselected package fonts-lmodern. 412s Preparing to unpack .../027-fonts-lmodern_2.005-1_all.deb ... 412s Unpacking fonts-lmodern (2.005-1) ... 412s Selecting previously unselected package fonts-mathjax. 412s Preparing to unpack .../028-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 412s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 413s Selecting previously unselected package libgfortran5:s390x. 413s Preparing to unpack .../029-libgfortran5_14-20240330-1ubuntu2_s390x.deb ... 413s Unpacking libgfortran5:s390x (14-20240330-1ubuntu2) ... 413s Selecting previously unselected package libgfortran-13-dev:s390x. 413s Preparing to unpack .../030-libgfortran-13-dev_13.2.0-23ubuntu3_s390x.deb ... 413s Unpacking libgfortran-13-dev:s390x (13.2.0-23ubuntu3) ... 413s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 413s Preparing to unpack .../031-gfortran-13-s390x-linux-gnu_13.2.0-23ubuntu3_s390x.deb ... 413s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-23ubuntu3) ... 413s Selecting previously unselected package gfortran-13. 413s Preparing to unpack .../032-gfortran-13_13.2.0-23ubuntu3_s390x.deb ... 413s Unpacking gfortran-13 (13.2.0-23ubuntu3) ... 413s Selecting previously unselected package gfortran-s390x-linux-gnu. 413s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 413s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 413s Selecting previously unselected package gfortran. 413s Preparing to unpack .../034-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 413s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 413s Selecting previously unselected package icu-devtools. 413s Preparing to unpack .../035-icu-devtools_74.2-1ubuntu1_s390x.deb ... 413s Unpacking icu-devtools (74.2-1ubuntu1) ... 413s Selecting previously unselected package javascript-common. 413s Preparing to unpack .../036-javascript-common_11+nmu1_all.deb ... 413s Unpacking javascript-common (11+nmu1) ... 413s Selecting previously unselected package libio-string-perl. 413s Preparing to unpack .../037-libio-string-perl_1.08-4_all.deb ... 413s Unpacking libio-string-perl (1.08-4) ... 413s Selecting previously unselected package liblatex-tounicode-perl. 413s Preparing to unpack .../038-liblatex-tounicode-perl_0.54-2_all.deb ... 413s Unpacking liblatex-tounicode-perl (0.54-2) ... 413s Selecting previously unselected package libbibtex-parser-perl. 413s Preparing to unpack .../039-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 413s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 413s Selecting previously unselected package libblas3:s390x. 413s Preparing to unpack .../040-libblas3_3.12.0-3_s390x.deb ... 413s Unpacking libblas3:s390x (3.12.0-3) ... 413s Selecting previously unselected package libblas-dev:s390x. 413s Preparing to unpack .../041-libblas-dev_3.12.0-3_s390x.deb ... 413s Unpacking libblas-dev:s390x (3.12.0-3) ... 413s Selecting previously unselected package libboost1.83-dev:s390x. 413s Preparing to unpack .../042-libboost1.83-dev_1.83.0-2.1ubuntu3_s390x.deb ... 413s Unpacking libboost1.83-dev:s390x (1.83.0-2.1ubuntu3) ... 416s Selecting previously unselected package libboost-dev:s390x. 416s Preparing to unpack .../043-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 416s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 416s Selecting previously unselected package libbz2-dev:s390x. 416s Preparing to unpack .../044-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 416s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 416s Selecting previously unselected package libpixman-1-0:s390x. 416s Preparing to unpack .../045-libpixman-1-0_0.42.2-1_s390x.deb ... 416s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 416s Selecting previously unselected package libxcb-render0:s390x. 416s Preparing to unpack .../046-libxcb-render0_1.15-1_s390x.deb ... 416s Unpacking libxcb-render0:s390x (1.15-1) ... 416s Selecting previously unselected package libxcb-shm0:s390x. 416s Preparing to unpack .../047-libxcb-shm0_1.15-1_s390x.deb ... 416s Unpacking libxcb-shm0:s390x (1.15-1) ... 416s Selecting previously unselected package libxrender1:s390x. 416s Preparing to unpack .../048-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 416s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 416s Selecting previously unselected package libcairo2:s390x. 416s Preparing to unpack .../049-libcairo2_1.18.0-3_s390x.deb ... 416s Unpacking libcairo2:s390x (1.18.0-3) ... 416s Selecting previously unselected package libdatrie1:s390x. 416s Preparing to unpack .../050-libdatrie1_0.2.13-3_s390x.deb ... 416s Unpacking libdatrie1:s390x (0.2.13-3) ... 416s Selecting previously unselected package libgraphite2-3:s390x. 416s Preparing to unpack .../051-libgraphite2-3_1.3.14-2_s390x.deb ... 416s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 416s Selecting previously unselected package libharfbuzz0b:s390x. 416s Preparing to unpack .../052-libharfbuzz0b_8.3.0-2build2_s390x.deb ... 416s Unpacking libharfbuzz0b:s390x (8.3.0-2build2) ... 416s Selecting previously unselected package x11-common. 416s Preparing to unpack .../053-x11-common_1%3a7.7+23ubuntu2_all.deb ... 416s Unpacking x11-common (1:7.7+23ubuntu2) ... 416s Selecting previously unselected package libice6:s390x. 416s Preparing to unpack .../054-libice6_2%3a1.0.10-1build2_s390x.deb ... 416s Unpacking libice6:s390x (2:1.0.10-1build2) ... 416s Selecting previously unselected package libicu-dev:s390x. 416s Preparing to unpack .../055-libicu-dev_74.2-1ubuntu1_s390x.deb ... 416s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 416s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 416s Preparing to unpack .../056-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 416s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 416s Selecting previously unselected package libjpeg8-dev:s390x. 416s Preparing to unpack .../057-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 416s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 416s Selecting previously unselected package libjpeg-dev:s390x. 416s Preparing to unpack .../058-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 416s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 416s Selecting previously unselected package libjs-bootstrap. 416s Preparing to unpack .../059-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 416s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 416s Selecting previously unselected package libjs-popper.js. 416s Preparing to unpack .../060-libjs-popper.js_1.16.1+ds-6_all.deb ... 416s Unpacking libjs-popper.js (1.16.1+ds-6) ... 416s Selecting previously unselected package libjs-bootstrap4. 416s Preparing to unpack .../061-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 416s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 416s Selecting previously unselected package libjs-d3. 416s Preparing to unpack .../062-libjs-d3_3.5.17-4_all.deb ... 416s Unpacking libjs-d3 (3.5.17-4) ... 416s Selecting previously unselected package libjs-es5-shim. 416s Preparing to unpack .../063-libjs-es5-shim_4.6.7-2_all.deb ... 416s Unpacking libjs-es5-shim (4.6.7-2) ... 416s Selecting previously unselected package libjs-highlight.js. 416s Preparing to unpack .../064-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 416s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 416s Selecting previously unselected package libjs-jquery. 416s Preparing to unpack .../065-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 416s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 416s Selecting previously unselected package libjs-jquery-datatables. 416s Preparing to unpack .../066-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 416s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 416s Selecting previously unselected package libjs-jquery-datatables-extensions. 416s Preparing to unpack .../067-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 416s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 416s Selecting previously unselected package libjs-sifter.js. 416s Preparing to unpack .../068-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 416s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 416s Selecting previously unselected package libjs-microplugin.js. 416s Preparing to unpack .../069-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 416s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 416s Selecting previously unselected package libjs-jquery-selectize.js. 416s Preparing to unpack .../070-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 416s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 416s Selecting previously unselected package libjs-jquery-ui. 416s Preparing to unpack .../071-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 416s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 416s Selecting previously unselected package libjs-json. 416s Preparing to unpack .../072-libjs-json_0~20221030+~1.0.8-1_all.deb ... 416s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 416s Selecting previously unselected package libjs-lunr. 416s Preparing to unpack .../073-libjs-lunr_2.3.9~dfsg-2_all.deb ... 416s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 416s Selecting previously unselected package libjs-prettify. 416s Preparing to unpack .../074-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 416s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 416s Selecting previously unselected package libkpathsea6:s390x. 416s Preparing to unpack .../075-libkpathsea6_2023.20230311.66589-9build3_s390x.deb ... 416s Unpacking libkpathsea6:s390x (2023.20230311.66589-9build3) ... 416s Selecting previously unselected package liblapack3:s390x. 416s Preparing to unpack .../076-liblapack3_3.12.0-3_s390x.deb ... 416s Unpacking liblapack3:s390x (3.12.0-3) ... 416s Selecting previously unselected package liblapack-dev:s390x. 416s Preparing to unpack .../077-liblapack-dev_3.12.0-3_s390x.deb ... 416s Unpacking liblapack-dev:s390x (3.12.0-3) ... 416s Selecting previously unselected package liblua5.4-0:s390x. 416s Preparing to unpack .../078-liblua5.4-0_5.4.6-3build2_s390x.deb ... 416s Unpacking liblua5.4-0:s390x (5.4.6-3build2) ... 416s Selecting previously unselected package libncurses-dev:s390x. 416s Preparing to unpack .../079-libncurses-dev_6.4+20240113-1ubuntu1_s390x.deb ... 416s Unpacking libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 416s Selecting previously unselected package libthai-data. 416s Preparing to unpack .../080-libthai-data_0.1.29-2_all.deb ... 416s Unpacking libthai-data (0.1.29-2) ... 416s Selecting previously unselected package libthai0:s390x. 416s Preparing to unpack .../081-libthai0_0.1.29-2_s390x.deb ... 416s Unpacking libthai0:s390x (0.1.29-2) ... 416s Selecting previously unselected package libpango-1.0-0:s390x. 416s Preparing to unpack .../082-libpango-1.0-0_1.52.1+ds-1build1_s390x.deb ... 416s Unpacking libpango-1.0-0:s390x (1.52.1+ds-1build1) ... 417s Selecting previously unselected package libpangoft2-1.0-0:s390x. 417s Preparing to unpack .../083-libpangoft2-1.0-0_1.52.1+ds-1build1_s390x.deb ... 417s Unpacking libpangoft2-1.0-0:s390x (1.52.1+ds-1build1) ... 417s Selecting previously unselected package libpangocairo-1.0-0:s390x. 417s Preparing to unpack .../084-libpangocairo-1.0-0_1.52.1+ds-1build1_s390x.deb ... 417s Unpacking libpangocairo-1.0-0:s390x (1.52.1+ds-1build1) ... 417s Selecting previously unselected package libpaper1:s390x. 417s Preparing to unpack .../085-libpaper1_1.1.29_s390x.deb ... 417s Unpacking libpaper1:s390x (1.1.29) ... 417s Selecting previously unselected package libpaper-utils. 417s Preparing to unpack .../086-libpaper-utils_1.1.29_s390x.deb ... 417s Unpacking libpaper-utils (1.1.29) ... 417s Selecting previously unselected package libpcre2-16-0:s390x. 417s Preparing to unpack .../087-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ... 417s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ... 417s Selecting previously unselected package libpcre2-32-0:s390x. 417s Preparing to unpack .../088-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ... 417s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ... 417s Selecting previously unselected package libpcre2-posix3:s390x. 417s Preparing to unpack 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.../094-libpotrace0_1.16-2_s390x.deb ... 417s Unpacking libpotrace0:s390x (1.16-2) ... 417s Selecting previously unselected package libptexenc1:s390x. 417s Preparing to unpack .../095-libptexenc1_2023.20230311.66589-9build3_s390x.deb ... 417s Unpacking libptexenc1:s390x (2023.20230311.66589-9build3) ... 417s Selecting previously unselected package libreadline-dev:s390x. 417s Preparing to unpack .../096-libreadline-dev_8.2-4build1_s390x.deb ... 417s Unpacking libreadline-dev:s390x (8.2-4build1) ... 417s Selecting previously unselected package libsm6:s390x. 417s Preparing to unpack .../097-libsm6_2%3a1.2.3-1build2_s390x.deb ... 417s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 417s Selecting previously unselected package libsynctex2:s390x. 417s Preparing to unpack .../098-libsynctex2_2023.20230311.66589-9build3_s390x.deb ... 417s Unpacking libsynctex2:s390x (2023.20230311.66589-9build3) ... 417s Selecting previously unselected package libtcl8.6:s390x. 417s Preparing to unpack .../099-libtcl8.6_8.6.14+dfsg-1build1_s390x.deb ... 417s Unpacking libtcl8.6:s390x (8.6.14+dfsg-1build1) ... 417s Selecting previously unselected package libteckit0:s390x. 417s Preparing to unpack .../100-libteckit0_2.5.12+ds1-1_s390x.deb ... 417s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 417s Selecting previously unselected package libtexlua53-5:s390x. 417s Preparing to unpack .../101-libtexlua53-5_2023.20230311.66589-9build3_s390x.deb ... 417s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9build3) ... 417s Selecting previously unselected package libxft2:s390x. 417s Preparing to unpack .../102-libxft2_2.3.6-1_s390x.deb ... 417s Unpacking libxft2:s390x (2.3.6-1) ... 417s Selecting previously unselected package libxss1:s390x. 417s Preparing to unpack .../103-libxss1_1%3a1.2.3-1build2_s390x.deb ... 417s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 417s Selecting previously unselected package libtk8.6:s390x. 417s Preparing to unpack .../104-libtk8.6_8.6.14-1build1_s390x.deb ... 417s Unpacking libtk8.6:s390x (8.6.14-1build1) ... 417s Selecting previously unselected package libxt6t64:s390x. 417s Preparing to unpack .../105-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 417s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 417s Selecting previously unselected package libxmu6:s390x. 417s Preparing to unpack .../106-libxmu6_2%3a1.1.3-3build2_s390x.deb ... 417s Unpacking libxmu6:s390x (2:1.1.3-3build2) ... 417s Selecting previously unselected package libxaw7:s390x. 417s Preparing to unpack .../107-libxaw7_2%3a1.0.14-1build2_s390x.deb ... 417s Unpacking libxaw7:s390x (2:1.0.14-1build2) ... 417s Selecting previously unselected package libxi6:s390x. 417s Preparing to unpack .../108-libxi6_2%3a1.8.1-1_s390x.deb ... 417s Unpacking libxi6:s390x (2:1.8.1-1) ... 417s Selecting previously unselected package libzzip-0-13t64:s390x. 417s Preparing to unpack .../109-libzzip-0-13t64_0.13.72+dfsg.1-1.2build1_s390x.deb ... 417s Unpacking libzzip-0-13t64:s390x (0.13.72+dfsg.1-1.2build1) ... 417s Selecting previously unselected package node-bootstrap-sass. 417s Preparing to unpack .../110-node-bootstrap-sass_3.4.3-2_all.deb ... 417s Unpacking node-bootstrap-sass (3.4.3-2) ... 417s Selecting previously unselected package node-html5shiv. 417s Preparing to unpack .../111-node-html5shiv_3.7.3+dfsg-5_all.deb ... 417s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 417s Selecting previously unselected package node-normalize.css. 417s Preparing to unpack .../112-node-normalize.css_8.0.1-5_all.deb ... 417s Unpacking node-normalize.css (8.0.1-5) ... 417s Selecting previously unselected package pandoc-data. 417s Preparing to unpack .../113-pandoc-data_3.1.3-1_all.deb ... 417s Unpacking pandoc-data (3.1.3-1) ... 417s Selecting previously unselected package pandoc. 417s Preparing to unpack .../114-pandoc_3.1.3+ds-2_s390x.deb ... 417s Unpacking pandoc (3.1.3+ds-2) ... 419s Selecting previously unselected package pkgconf-bin. 419s Preparing to unpack .../115-pkgconf-bin_1.8.1-2_s390x.deb ... 419s Unpacking pkgconf-bin (1.8.1-2) ... 419s Selecting previously unselected package pkgconf:s390x. 419s Preparing to unpack .../116-pkgconf_1.8.1-2_s390x.deb ... 419s Unpacking pkgconf:s390x (1.8.1-2) ... 419s Selecting previously unselected package pkg-config:s390x. 419s Preparing to unpack .../117-pkg-config_1.8.1-2_s390x.deb ... 419s Unpacking pkg-config:s390x (1.8.1-2) ... 419s Selecting previously unselected package zip. 419s Preparing to unpack .../118-zip_3.0-13_s390x.deb ... 419s Unpacking zip (3.0-13) ... 419s Selecting previously unselected package unzip. 419s Preparing to unpack .../119-unzip_6.0-28ubuntu3_s390x.deb ... 419s Unpacking unzip (6.0-28ubuntu3) ... 419s Selecting previously unselected package xdg-utils. 419s Preparing to unpack .../120-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 419s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 419s Selecting previously unselected package r-base-core. 419s Preparing to unpack .../121-r-base-core_4.3.3-2build2_s390x.deb ... 419s Unpacking r-base-core (4.3.3-2build2) ... 420s Selecting previously unselected package liblzma-dev:s390x. 420s Preparing to unpack .../122-liblzma-dev_5.6.1+really5.4.5-1_s390x.deb ... 420s Unpacking liblzma-dev:s390x (5.6.1+really5.4.5-1) ... 420s Selecting previously unselected package r-base-dev. 420s Preparing to unpack .../123-r-base-dev_4.3.3-2build2_all.deb ... 420s Unpacking r-base-dev (4.3.3-2build2) ... 420s Selecting previously unselected package pkg-r-autopkgtest. 420s Preparing to unpack .../124-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 420s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 420s Selecting previously unselected package r-bioc-biocgenerics. 420s Preparing to unpack .../125-r-bioc-biocgenerics_0.48.1-2_all.deb ... 420s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 420s Selecting previously unselected package r-bioc-biobase. 420s Preparing to unpack .../126-r-bioc-biobase_2.62.0-1_s390x.deb ... 420s Unpacking r-bioc-biobase (2.62.0-1) ... 420s Selecting previously unselected package r-bioc-s4vectors. 420s Preparing to unpack .../127-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 420s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 420s Selecting previously unselected package r-bioc-iranges. 420s Preparing to unpack .../128-r-bioc-iranges_2.36.0-1_s390x.deb ... 420s Unpacking r-bioc-iranges (2.36.0-1) ... 420s Selecting previously unselected package r-cran-dbi. 420s Preparing to unpack .../129-r-cran-dbi_1.2.2-1_all.deb ... 420s Unpacking r-cran-dbi (1.2.2-1) ... 420s Selecting previously unselected package r-cran-bit. 420s Preparing to unpack .../130-r-cran-bit_4.0.5-1_s390x.deb ... 420s Unpacking r-cran-bit (4.0.5-1) ... 420s Selecting previously unselected package r-cran-bit64. 420s Preparing to unpack .../131-r-cran-bit64_4.0.5-1_s390x.deb ... 420s Unpacking r-cran-bit64 (4.0.5-1) ... 420s Selecting previously unselected package r-cran-rlang. 420s Preparing to unpack .../132-r-cran-rlang_1.1.3-1_s390x.deb ... 420s Unpacking r-cran-rlang (1.1.3-1) ... 420s Selecting previously unselected package r-cran-cli. 420s Preparing to unpack .../133-r-cran-cli_3.6.2-1_s390x.deb ... 420s Unpacking r-cran-cli (3.6.2-1) ... 420s Selecting previously unselected package r-cran-glue. 420s Preparing to unpack .../134-r-cran-glue_1.7.0-1_s390x.deb ... 420s Unpacking r-cran-glue (1.7.0-1) ... 420s Selecting previously unselected package r-cran-lifecycle. 420s Preparing to unpack .../135-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 420s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 420s Selecting previously unselected package r-cran-vctrs. 420s Preparing to unpack .../136-r-cran-vctrs_0.6.5-1_s390x.deb ... 420s Unpacking r-cran-vctrs (0.6.5-1) ... 420s Selecting previously unselected package r-cran-blob. 420s Preparing to unpack .../137-r-cran-blob_1.2.4-1_all.deb ... 420s Unpacking r-cran-blob (1.2.4-1) ... 420s Selecting previously unselected package r-cran-fastmap. 420s Preparing to unpack .../138-r-cran-fastmap_1.1.1-1_s390x.deb ... 420s Unpacking r-cran-fastmap (1.1.1-1) ... 420s Selecting previously unselected package r-cran-cachem. 420s Preparing to unpack .../139-r-cran-cachem_1.0.8-1_s390x.deb ... 420s Unpacking r-cran-cachem (1.0.8-1) ... 420s Selecting previously unselected package r-cran-memoise. 420s Preparing to unpack .../140-r-cran-memoise_2.0.1-1_all.deb ... 420s Unpacking r-cran-memoise (2.0.1-1) ... 420s Selecting previously unselected package r-cran-pkgconfig. 420s Preparing to unpack .../141-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 420s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 420s Selecting previously unselected package r-cran-plogr. 420s Preparing to unpack .../142-r-cran-plogr_0.2.0-3build1_all.deb ... 420s Unpacking r-cran-plogr (0.2.0-3build1) ... 420s Selecting previously unselected package r-cran-cpp11. 420s Preparing to unpack .../143-r-cran-cpp11_0.4.7-1_all.deb ... 420s Unpacking r-cran-cpp11 (0.4.7-1) ... 420s Selecting previously unselected package r-cran-rsqlite. 420s Preparing to unpack .../144-r-cran-rsqlite_2.3.4-1_s390x.deb ... 420s Unpacking r-cran-rsqlite (2.3.4-1) ... 420s Selecting previously unselected package r-cran-curl. 420s Preparing to unpack .../145-r-cran-curl_5.2.0+dfsg-1build2_s390x.deb ... 420s Unpacking r-cran-curl (5.2.0+dfsg-1build2) ... 420s Selecting previously unselected package r-cran-jsonlite. 420s Preparing to unpack .../146-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 420s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 420s Selecting previously unselected package r-cran-mime. 420s Preparing to unpack .../147-r-cran-mime_0.12-1_s390x.deb ... 420s Unpacking r-cran-mime (0.12-1) ... 420s Selecting previously unselected package r-cran-sys. 420s Preparing to unpack .../148-r-cran-sys_3.4.2-1_s390x.deb ... 420s Unpacking r-cran-sys (3.4.2-1) ... 420s Selecting previously unselected package r-cran-askpass. 420s Preparing to unpack .../149-r-cran-askpass_1.2.0-1_s390x.deb ... 420s Unpacking r-cran-askpass (1.2.0-1) ... 420s Selecting previously unselected package r-cran-openssl. 420s Preparing to unpack .../150-r-cran-openssl_2.1.1+dfsg-2build2_s390x.deb ... 420s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ... 420s Selecting previously unselected package r-cran-r6. 420s Preparing to unpack .../151-r-cran-r6_2.5.1-1_all.deb ... 420s Unpacking r-cran-r6 (2.5.1-1) ... 420s Selecting previously unselected package r-cran-httr. 420s Preparing to unpack .../152-r-cran-httr_1.4.7+dfsg-1_all.deb ... 420s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 420s Selecting previously unselected package r-cran-png. 420s Preparing to unpack .../153-r-cran-png_0.1-8-1build2_s390x.deb ... 420s Unpacking r-cran-png (0.1-8-1build2) ... 420s Selecting previously unselected package r-bioc-zlibbioc. 420s Preparing to unpack .../154-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 420s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 420s Selecting previously unselected package r-bioc-xvector. 420s Preparing to unpack .../155-r-bioc-xvector_0.42.0-1_s390x.deb ... 420s Unpacking r-bioc-xvector (0.42.0-1) ... 420s Selecting previously unselected package r-cran-bitops. 420s Preparing to unpack .../156-r-cran-bitops_1.0-7-1_s390x.deb ... 420s Unpacking r-cran-bitops (1.0-7-1) ... 420s Selecting previously unselected package r-cran-rcurl. 420s Preparing to unpack .../157-r-cran-rcurl_1.98-1.14+dfsg-1build2_s390x.deb ... 420s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1build2) ... 420s Selecting previously unselected package r-bioc-genomeinfodbdata. 420s Preparing to unpack .../158-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 420s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 420s Selecting previously unselected package r-bioc-genomeinfodb. 420s Preparing to unpack .../159-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 420s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 420s Selecting previously unselected package r-cran-crayon. 420s Preparing to unpack .../160-r-cran-crayon_1.5.2-1_all.deb ... 420s Unpacking r-cran-crayon (1.5.2-1) ... 420s Selecting previously unselected package r-bioc-biostrings. 420s Preparing to unpack .../161-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 420s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 420s Selecting previously unselected package r-bioc-keggrest. 420s Preparing to unpack .../162-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 420s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 420s Selecting previously unselected package r-bioc-annotationdbi. 420s Preparing to unpack .../163-r-bioc-annotationdbi_1.64.1-1_all.deb ... 420s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 420s Selecting previously unselected package r-cran-generics. 420s Preparing to unpack .../164-r-cran-generics_0.1.3-1_all.deb ... 420s Unpacking r-cran-generics (0.1.3-1) ... 420s Selecting previously unselected package r-cran-magrittr. 420s Preparing to unpack .../165-r-cran-magrittr_2.0.3-1_s390x.deb ... 420s Unpacking r-cran-magrittr (2.0.3-1) ... 420s Selecting previously unselected package r-cran-fansi. 421s Preparing to unpack .../166-r-cran-fansi_1.0.5-1_s390x.deb ... 421s Unpacking r-cran-fansi (1.0.5-1) ... 421s Selecting previously unselected package r-cran-utf8. 421s Preparing to unpack .../167-r-cran-utf8_1.2.4-1_s390x.deb ... 421s Unpacking r-cran-utf8 (1.2.4-1) ... 421s Selecting previously unselected package r-cran-pillar. 421s Preparing to unpack .../168-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 421s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 421s Selecting previously unselected package r-cran-tibble. 421s Preparing to unpack .../169-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 421s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 421s Selecting previously unselected package r-cran-withr. 421s Preparing to unpack .../170-r-cran-withr_2.5.0-1_all.deb ... 421s Unpacking r-cran-withr (2.5.0-1) ... 421s Selecting previously unselected package r-cran-tidyselect. 421s Preparing to unpack .../171-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 421s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 421s Selecting previously unselected package r-cran-dplyr. 421s Preparing to unpack .../172-r-cran-dplyr_1.1.4-1_s390x.deb ... 421s Unpacking r-cran-dplyr (1.1.4-1) ... 421s Selecting previously unselected package r-cran-purrr. 421s Preparing to unpack .../173-r-cran-purrr_1.0.2-1_s390x.deb ... 421s Unpacking r-cran-purrr (1.0.2-1) ... 421s Selecting previously unselected package r-cran-stringi. 421s Preparing to unpack .../174-r-cran-stringi_1.8.3-1_s390x.deb ... 421s Unpacking r-cran-stringi (1.8.3-1) ... 421s Selecting previously unselected package r-cran-stringr. 421s Preparing to unpack .../175-r-cran-stringr_1.5.1-1_all.deb ... 421s Unpacking r-cran-stringr (1.5.1-1) ... 421s Selecting previously unselected package r-cran-tidyr. 421s Preparing to unpack .../176-r-cran-tidyr_1.3.1-1_s390x.deb ... 421s Unpacking r-cran-tidyr (1.3.1-1) ... 421s Selecting previously unselected package r-cran-dbplyr. 421s Preparing to unpack .../177-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 421s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 421s Selecting previously unselected package r-cran-filelock. 421s Preparing to unpack .../178-r-cran-filelock_1.0.3-1_s390x.deb ... 421s Unpacking r-cran-filelock (1.0.3-1) ... 421s Selecting previously unselected package r-bioc-biocfilecache. 421s Preparing to unpack .../179-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 421s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 421s Selecting previously unselected package r-cran-biocmanager. 421s Preparing to unpack .../180-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 421s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 421s Selecting previously unselected package r-bioc-biocversion. 421s Preparing to unpack .../181-r-bioc-biocversion_3.18.1-1_all.deb ... 421s Unpacking r-bioc-biocversion (3.18.1-1) ... 421s Selecting previously unselected package r-cran-rappdirs. 421s Preparing to unpack .../182-r-cran-rappdirs_0.3.3-1_s390x.deb ... 421s Unpacking r-cran-rappdirs (0.3.3-1) ... 421s Selecting previously unselected package r-cran-yaml. 421s Preparing to unpack .../183-r-cran-yaml_2.3.8-1_s390x.deb ... 421s Unpacking r-cran-yaml (2.3.8-1) ... 421s Selecting previously unselected package r-cran-littler. 421s Preparing to unpack .../184-r-cran-littler_0.3.19-1_s390x.deb ... 421s Unpacking r-cran-littler (0.3.19-1) ... 421s Selecting previously unselected package r-cran-pkgkitten. 421s Preparing to unpack .../185-r-cran-pkgkitten_0.2.3-1_all.deb ... 421s Unpacking r-cran-pkgkitten (0.2.3-1) ... 421s Selecting previously unselected package r-cran-rcpp. 421s Preparing to unpack .../186-r-cran-rcpp_1.0.12-1_s390x.deb ... 421s Unpacking r-cran-rcpp (1.0.12-1) ... 421s Selecting previously unselected package r-cran-later. 421s Preparing to unpack .../187-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 421s Unpacking r-cran-later (1.3.2+dfsg-1) ... 421s Selecting previously unselected package r-cran-promises. 421s Preparing to unpack .../188-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 421s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 421s Selecting previously unselected package r-cran-httpuv. 421s Preparing to unpack .../189-r-cran-httpuv_1.6.14+dfsg-1build2_s390x.deb ... 421s Unpacking r-cran-httpuv (1.6.14+dfsg-1build2) ... 421s Selecting previously unselected package r-cran-xtable. 421s Preparing to unpack .../190-r-cran-xtable_1%3a1.8-4-2_all.deb ... 421s Unpacking r-cran-xtable (1:1.8-4-2) ... 421s Selecting previously unselected package r-cran-base64enc. 421s Preparing to unpack .../191-r-cran-base64enc_0.1-3-3_s390x.deb ... 421s Unpacking r-cran-base64enc (0.1-3-3) ... 421s Selecting previously unselected package r-cran-digest. 421s Preparing to unpack .../192-r-cran-digest_0.6.34-1_s390x.deb ... 421s Unpacking r-cran-digest (0.6.34-1) ... 421s Selecting previously unselected package r-cran-ellipsis. 421s Preparing to unpack .../193-r-cran-ellipsis_0.3.2-2_s390x.deb ... 421s Unpacking r-cran-ellipsis (0.3.2-2) ... 421s Selecting previously unselected package r-cran-htmltools. 421s Preparing to unpack .../194-r-cran-htmltools_0.5.7-1_s390x.deb ... 421s Unpacking r-cran-htmltools (0.5.7-1) ... 421s Selecting previously unselected package r-cran-fontawesome. 421s Preparing to unpack .../195-r-cran-fontawesome_0.5.2-1_all.deb ... 421s Unpacking r-cran-fontawesome (0.5.2-1) ... 421s Selecting previously unselected package r-cran-sourcetools. 421s Preparing to unpack .../196-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 421s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 421s Selecting previously unselected package r-cran-commonmark. 421s Preparing to unpack .../197-r-cran-commonmark_1.9.1-1_s390x.deb ... 421s Unpacking r-cran-commonmark (1.9.1-1) ... 421s Selecting previously unselected package r-cran-jquerylib. 421s Preparing to unpack .../198-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 421s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 422s Selecting previously unselected package r-cran-fs. 422s Preparing to unpack .../199-r-cran-fs_1.6.3+dfsg-1build2_s390x.deb ... 422s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ... 422s Selecting previously unselected package r-cran-sass. 422s Preparing to unpack .../200-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 422s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 422s Selecting previously unselected package r-cran-bslib. 422s Preparing to unpack .../201-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 422s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 422s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 422s Preparing to unpack .../202-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 422s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 422s Selecting previously unselected package r-cran-shiny. 422s Preparing to unpack .../203-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 422s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 422s Selecting previously unselected package r-cran-evaluate. 422s Preparing to unpack .../204-r-cran-evaluate_0.23-1_all.deb ... 422s Unpacking r-cran-evaluate (0.23-1) ... 422s Selecting previously unselected package r-cran-xfun. 422s Preparing to unpack .../205-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 422s Unpacking r-cran-xfun (0.41+dfsg-1) ... 422s Selecting previously unselected package r-cran-highr. 422s Preparing to unpack .../206-r-cran-highr_0.10+dfsg-1_all.deb ... 422s Unpacking r-cran-highr (0.10+dfsg-1) ... 422s Selecting previously unselected package libjs-mathjax. 422s Preparing to unpack .../207-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 422s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 423s Selecting previously unselected package r-cran-knitr. 423s Preparing to unpack .../208-r-cran-knitr_1.45+dfsg-1_all.deb ... 423s Unpacking r-cran-knitr (1.45+dfsg-1) ... 423s Selecting previously unselected package r-cran-tinytex. 423s Preparing to unpack .../209-r-cran-tinytex_0.49-1_all.deb ... 423s Unpacking r-cran-tinytex (0.49-1) ... 423s Selecting previously unselected package libjs-modernizr. 423s Preparing to unpack .../210-libjs-modernizr_2.6.2+ds1-5_all.deb ... 423s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 423s Selecting previously unselected package r-cran-rmarkdown. 423s Preparing to unpack .../211-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 423s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 423s Selecting previously unselected package r-cran-htmlwidgets. 423s Preparing to unpack .../212-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 423s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 423s Selecting previously unselected package r-cran-lazyeval. 423s Preparing to unpack .../213-r-cran-lazyeval_0.2.2-1build1_s390x.deb ... 423s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 423s Selecting previously unselected package r-cran-crosstalk. 423s Preparing to unpack .../214-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 423s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 423s Selecting previously unselected package r-cran-dt. 423s Preparing to unpack .../215-r-cran-dt_0.31+dfsg-1_all.deb ... 423s Unpacking r-cran-dt (0.31+dfsg-1) ... 423s Selecting previously unselected package r-bioc-interactivedisplaybase. 423s Preparing to unpack .../216-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 423s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 423s Selecting previously unselected package r-bioc-annotationhub. 423s Preparing to unpack .../217-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 423s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 423s Selecting previously unselected package r-bioc-biocio. 423s Preparing to unpack .../218-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 423s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 423s Selecting previously unselected package r-cran-formatr. 423s Preparing to unpack .../219-r-cran-formatr_1.14-1_all.deb ... 423s Unpacking r-cran-formatr (1.14-1) ... 423s Selecting previously unselected package r-cran-lambda.r. 423s Preparing to unpack .../220-r-cran-lambda.r_1.2.4-2build1_all.deb ... 423s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 423s Selecting previously unselected package r-cran-futile.options. 423s Preparing to unpack .../221-r-cran-futile.options_1.0.1-3build1_all.deb ... 423s Unpacking r-cran-futile.options (1.0.1-3build1) ... 423s Selecting previously unselected package r-cran-futile.logger. 423s Preparing to unpack .../222-r-cran-futile.logger_1.4.3-4build1_all.deb ... 423s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 423s Selecting previously unselected package r-cran-snow. 423s Preparing to unpack .../223-r-cran-snow_1%3a0.4.4-2_all.deb ... 423s Unpacking r-cran-snow (1:0.4.4-2) ... 423s Selecting previously unselected package r-cran-codetools. 423s Preparing to unpack .../224-r-cran-codetools_0.2-19-1_all.deb ... 423s Unpacking r-cran-codetools (0.2-19-1) ... 423s Selecting previously unselected package r-cran-bh. 423s Preparing to unpack .../225-r-cran-bh_1.84.0-1_all.deb ... 423s Unpacking r-cran-bh (1.84.0-1) ... 423s Selecting previously unselected package r-bioc-biocparallel. 423s Preparing to unpack .../226-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 423s Unpacking r-bioc-biocparallel (1.36.0-1) ... 423s Selecting previously unselected package r-cran-bookdown. 423s Preparing to unpack .../227-r-cran-bookdown_0.37+dfsg-1_all.deb ... 423s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 423s Selecting previously unselected package tex-common. 423s Preparing to unpack .../228-tex-common_6.18_all.deb ... 423s Unpacking tex-common (6.18) ... 423s Selecting previously unselected package t1utils. 423s Preparing to unpack .../229-t1utils_1.41-4build2_s390x.deb ... 423s Unpacking t1utils (1.41-4build2) ... 423s Selecting previously unselected package texlive-binaries. 423s Preparing to unpack .../230-texlive-binaries_2023.20230311.66589-9build3_s390x.deb ... 423s Unpacking texlive-binaries (2023.20230311.66589-9build3) ... 423s Selecting previously unselected package texlive-base. 423s Preparing to unpack .../231-texlive-base_2023.20240207-1_all.deb ... 423s Unpacking texlive-base (2023.20240207-1) ... 425s Selecting previously unselected package texlive-latex-base. 425s Preparing to unpack .../232-texlive-latex-base_2023.20240207-1_all.deb ... 425s Unpacking texlive-latex-base (2023.20240207-1) ... 425s Selecting previously unselected package texlive-bibtex-extra. 425s Preparing to unpack .../233-texlive-bibtex-extra_2023.20240207-1_all.deb ... 425s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 428s Selecting previously unselected package r-bioc-biocstyle. 428s Preparing to unpack .../234-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 428s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 428s Selecting previously unselected package r-cran-xml. 428s Preparing to unpack .../235-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 428s Unpacking r-cran-xml (3.99-0.16.1-1) ... 428s Selecting previously unselected package r-cran-hms. 428s Preparing to unpack .../236-r-cran-hms_1.1.3-1_all.deb ... 428s Unpacking r-cran-hms (1.1.3-1) ... 428s Selecting previously unselected package r-cran-prettyunits. 428s Preparing to unpack .../237-r-cran-prettyunits_1.2.0-1_all.deb ... 428s Unpacking r-cran-prettyunits (1.2.0-1) ... 428s Selecting previously unselected package r-cran-progress. 428s Preparing to unpack .../238-r-cran-progress_1.2.3-1_all.deb ... 428s Unpacking r-cran-progress (1.2.3-1) ... 428s Selecting previously unselected package r-cran-xml2. 428s Preparing to unpack .../239-r-cran-xml2_1.3.6-1_s390x.deb ... 428s Unpacking r-cran-xml2 (1.3.6-1) ... 428s Selecting previously unselected package r-bioc-biomart. 428s Preparing to unpack .../240-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 428s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 428s Selecting previously unselected package r-bioc-genomicranges. 428s Preparing to unpack .../241-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 428s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 428s Selecting previously unselected package r-bioc-rhtslib. 428s Preparing to unpack .../242-r-bioc-rhtslib_2.4.1+dfsg-3build2_s390x.deb ... 428s Unpacking r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 428s Selecting previously unselected package r-bioc-rsamtools. 428s Preparing to unpack .../243-r-bioc-rsamtools_2.18.0+dfsg-1build1_s390x.deb ... 428s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 428s Selecting previously unselected package r-cran-matrixstats. 428s Preparing to unpack .../244-r-cran-matrixstats_1.2.0-1_s390x.deb ... 428s Unpacking r-cran-matrixstats (1.2.0-1) ... 428s Selecting previously unselected package r-bioc-matrixgenerics. 428s Preparing to unpack .../245-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 428s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 428s Selecting previously unselected package r-cran-lattice. 428s Preparing to unpack .../246-r-cran-lattice_0.22-5-1_s390x.deb ... 428s Unpacking r-cran-lattice (0.22-5-1) ... 428s Selecting previously unselected package r-cran-matrix. 428s Preparing to unpack .../247-r-cran-matrix_1.6-5-1_s390x.deb ... 428s Unpacking r-cran-matrix (1.6-5-1) ... 428s Selecting previously unselected package r-cran-abind. 428s Preparing to unpack .../248-r-cran-abind_1.4-5-2_all.deb ... 428s Unpacking r-cran-abind (1.4-5-2) ... 428s Selecting previously unselected package r-bioc-s4arrays. 428s Preparing to unpack .../249-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 428s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 428s Selecting previously unselected package r-bioc-sparsearray. 428s Preparing to unpack .../250-r-bioc-sparsearray_1.2.4+dfsg-1_s390x.deb ... 428s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 428s Selecting previously unselected package r-bioc-delayedarray. 428s Preparing to unpack .../251-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ... 428s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 428s Selecting previously unselected package r-bioc-summarizedexperiment. 428s Preparing to unpack .../252-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 428s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 428s Selecting previously unselected package r-bioc-genomicalignments. 428s Preparing to unpack .../253-r-bioc-genomicalignments_1.38.2-1_s390x.deb ... 428s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 428s Selecting previously unselected package r-cran-rjson. 428s Preparing to unpack .../254-r-cran-rjson_0.2.21-1_s390x.deb ... 428s Unpacking r-cran-rjson (0.2.21-1) ... 428s Selecting previously unselected package r-cran-restfulr. 428s Preparing to unpack .../255-r-cran-restfulr_0.0.15-1_s390x.deb ... 428s Unpacking r-cran-restfulr (0.0.15-1) ... 428s Selecting previously unselected package r-bioc-rtracklayer. 428s Preparing to unpack .../256-r-bioc-rtracklayer_1.62.0-1_s390x.deb ... 428s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 428s Selecting previously unselected package r-bioc-bsgenome. 428s Preparing to unpack .../257-r-bioc-bsgenome_1.70.2-1_all.deb ... 428s Unpacking r-bioc-bsgenome (1.70.2-1) ... 428s Selecting previously unselected package r-bioc-genomicfeatures. 428s Preparing to unpack .../258-r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb ... 428s Unpacking r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 428s Selecting previously unselected package r-cran-survival. 428s Preparing to unpack .../259-r-cran-survival_3.5-8-1_s390x.deb ... 428s Unpacking r-cran-survival (3.5-8-1) ... 429s Selecting previously unselected package r-bioc-snpstats. 429s Preparing to unpack .../260-r-bioc-snpstats_1.52.0+dfsg-1_s390x.deb ... 429s Unpacking r-bioc-snpstats (1.52.0+dfsg-1) ... 429s Selecting previously unselected package r-bioc-variantannotation. 429s Preparing to unpack .../261-r-bioc-variantannotation_1.48.1-1build1_s390x.deb ... 429s Unpacking r-bioc-variantannotation (1.48.1-1build1) ... 429s Selecting previously unselected package r-cran-colorspace. 429s Preparing to unpack .../262-r-cran-colorspace_2.1-0+dfsg-1_s390x.deb ... 429s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 429s Selecting previously unselected package r-cran-farver. 429s Preparing to unpack .../263-r-cran-farver_2.1.1-1_s390x.deb ... 429s Unpacking r-cran-farver (2.1.1-1) ... 429s Selecting previously unselected package r-cran-gtable. 429s Preparing to unpack .../264-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 429s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 429s Selecting previously unselected package r-cran-isoband. 429s Preparing to unpack .../265-r-cran-isoband_0.2.7-1_s390x.deb ... 429s Unpacking r-cran-isoband (0.2.7-1) ... 429s Selecting previously unselected package r-cran-mass. 429s Preparing to unpack .../266-r-cran-mass_7.3-60.0.1-1_s390x.deb ... 429s Unpacking r-cran-mass (7.3-60.0.1-1) ... 429s Selecting previously unselected package r-cran-nlme. 429s Preparing to unpack .../267-r-cran-nlme_3.1.164-1_s390x.deb ... 429s Unpacking r-cran-nlme (3.1.164-1) ... 429s Selecting previously unselected package r-cran-mgcv. 429s Preparing to unpack .../268-r-cran-mgcv_1.9-1-1_s390x.deb ... 429s Unpacking r-cran-mgcv (1.9-1-1) ... 429s Selecting previously unselected package r-cran-labeling. 429s Preparing to unpack .../269-r-cran-labeling_0.4.3-1_all.deb ... 429s Unpacking r-cran-labeling (0.4.3-1) ... 429s Selecting previously unselected package r-cran-munsell. 429s Preparing to unpack .../270-r-cran-munsell_0.5.0-2build1_all.deb ... 429s Unpacking r-cran-munsell (0.5.0-2build1) ... 429s Selecting previously unselected package r-cran-rcolorbrewer. 429s Preparing to unpack .../271-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 429s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 429s Selecting previously unselected package r-cran-viridislite. 429s Preparing to unpack .../272-r-cran-viridislite_0.4.2-2_all.deb ... 429s Unpacking r-cran-viridislite (0.4.2-2) ... 429s Selecting previously unselected package r-cran-scales. 429s Preparing to unpack .../273-r-cran-scales_1.3.0-1_all.deb ... 429s Unpacking r-cran-scales (1.3.0-1) ... 429s Selecting previously unselected package r-cran-ggplot2. 429s Preparing to unpack .../274-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 429s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 429s Selecting previously unselected package r-cran-runit. 429s Preparing to unpack .../275-r-cran-runit_0.4.33-1_all.deb ... 429s Unpacking r-cran-runit (0.4.33-1) ... 429s Selecting previously unselected package autopkgtest-satdep. 429s Preparing to unpack .../276-1-autopkgtest-satdep.deb ... 429s Unpacking autopkgtest-satdep (0) ... 429s Setting up libjs-json (0~20221030+~1.0.8-1) ... 429s Setting up javascript-common (11+nmu1) ... 429s Setting up libgraphite2-3:s390x (1.3.14-2) ... 429s Setting up libpixman-1-0:s390x (0.42.2-1) ... 429s Setting up libpaper1:s390x (1.1.29) ... 429s 429s Creating config file /etc/papersize with new version 429s Setting up fontconfig 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r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 434s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 434s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 434s Setting up r-bioc-annotationdbi (1.64.1-1) ... 434s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 434s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 434s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 434s Setting up r-bioc-genomicalignments (1.38.2-1) ... 434s Setting up r-cran-bookdown (0.37+dfsg-1) ... 434s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 434s Setting up r-bioc-rtracklayer (1.62.0-1) ... 434s Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 434s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 434s Setting up r-bioc-bsgenome (1.70.2-1) ... 434s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 434s Setting up r-cran-dt (0.31+dfsg-1) ... 434s Setting up r-bioc-variantannotation (1.48.1-1build1) ... 434s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 434s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 434s Setting up autopkgtest-satdep (0) ... 434s Processing triggers for man-db (2.12.0-4build1) ... 435s Processing triggers for install-info (7.1-3build2) ... 435s Processing triggers for libc-bin (2.39-0ubuntu8) ... 435s Processing triggers for tex-common (6.18) ... 435s Running updmap-sys. This may take some time... done. 435s Running mktexlsr /var/lib/texmf ... done. 435s Building format(s) --all. 479s This may take some time... done. 487s (Reading database ... 104387 files and directories currently installed.) 487s Removing autopkgtest-satdep (0) ... 488s autopkgtest [22:17:48]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 488s autopkgtest [22:17:48]: test pkg-r-autopkgtest: [----------------------- 488s Test: Try to load the R library VariantAnnotation 488s 488s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 488s Copyright (C) 2024 The R Foundation for Statistical Computing 488s Platform: s390x-ibm-linux-gnu (64-bit) 488s 488s R is free software and comes with ABSOLUTELY NO WARRANTY. 488s You are welcome to redistribute it under certain conditions. 488s Type 'license()' or 'licence()' for distribution details. 488s 488s R is a collaborative project with many contributors. 488s Type 'contributors()' for more information and 488s 'citation()' on how to cite R or R packages in publications. 488s 488s Type 'demo()' for some demos, 'help()' for on-line help, or 488s 'help.start()' for an HTML browser interface to help. 488s Type 'q()' to quit R. 488s 488s > library('VariantAnnotation') 488s Loading required package: BiocGenerics 488s 488s Attaching package: ‘BiocGenerics’ 488s 488s The following objects are masked from ‘package:stats’: 488s 488s IQR, mad, sd, var, xtabs 488s 488s The following objects are masked from ‘package:base’: 488s 488s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 488s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 488s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 488s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 488s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 488s table, tapply, union, unique, unsplit, which.max, which.min 488s 488s Loading required package: MatrixGenerics 488s Loading required package: matrixStats 488s 488s Attaching package: ‘MatrixGenerics’ 488s 488s The following objects are masked from ‘package:matrixStats’: 488s 488s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 488s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 488s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 488s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 488s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 488s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 488s colWeightedMeans, colWeightedMedians, colWeightedSds, 488s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 488s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 488s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 488s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 488s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 488s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 488s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 488s rowWeightedSds, rowWeightedVars 488s 488s Loading required package: GenomeInfoDb 488s Loading required package: S4Vectors 488s Loading required package: stats4 489s 489s Attaching package: ‘S4Vectors’ 489s 489s The following object is masked from ‘package:utils’: 489s 489s findMatches 489s 489s The following objects are masked from ‘package:base’: 489s 489s expand.grid, I, unname 489s 489s Loading required package: IRanges 490s Loading required package: GenomicRanges 490s Loading required package: SummarizedExperiment 490s Loading required package: Biobase 491s Welcome to Bioconductor 491s 491s Vignettes contain introductory material; view with 491s 'browseVignettes()'. To cite Bioconductor, see 491s 'citation("Biobase")', and for packages 'citation("pkgname")'. 491s 491s 491s Attaching package: ‘Biobase’ 491s 491s The following object is masked from ‘package:MatrixGenerics’: 491s 491s rowMedians 491s 491s The following objects are masked from ‘package:matrixStats’: 491s 491s anyMissing, rowMedians 491s 494s Loading required package: Rsamtools 494s Loading required package: Biostrings 494s Loading required package: XVector 494s 494s Attaching package: ‘Biostrings’ 494s 494s The following object is masked from ‘package:base’: 494s 494s strsplit 494s 500s 500s Attaching package: ‘VariantAnnotation’ 500s 500s The following object is masked from ‘package:base’: 500s 500s tabulate 500s 500s > 500s > 500s Other tests are currently unsupported! 500s They will be progressively added. 501s autopkgtest [22:18:01]: test pkg-r-autopkgtest: -----------------------] 501s autopkgtest [22:18:01]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 501s pkg-r-autopkgtest PASS 502s autopkgtest [22:18:02]: @@@@@@@@@@@@@@@@@@@@ summary 502s pkg-r-autopkgtest PASS 523s Creating nova instance adt-noble-s390x-r-bioc-variantannotation-20240408-220940-juju-7f2275-prod-proposed-migration-environment-3-626ac208-19b9-42ae-9d3b-bb1e865d3e44 from image adt/ubuntu-noble-s390x-server-20240408.img (UUID dabee26b-d275-4b09-9409-7ef2599f373e)...