0s autopkgtest [19:02:37]: starting date and time: 2024-03-16 19:02:37+0000 0s autopkgtest [19:02:37]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [19:02:37]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.09sacllt/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-variantannotation,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-variantannotation --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-8.secgroup --name adt-noble-s390x-r-bioc-variantannotation-20240316-190237-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 99s autopkgtest [19:04:16]: testbed dpkg architecture: s390x 100s autopkgtest [19:04:17]: testbed apt version: 2.7.12 100s autopkgtest [19:04:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 100s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 101s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 101s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 102s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 102s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 102s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB] 102s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 102s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 102s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 102s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3752 kB] 102s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 102s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB] 102s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 104s Fetched 8760 kB in 3s (3266 kB/s) 104s Reading package lists... 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Calculating upgrade... 107s The following packages will be REMOVED: 107s libssl3 107s The following NEW packages will be installed: 107s libssl3t64 107s The following packages have been kept back: 107s curl 107s The following packages will be upgraded: 107s openssl ubuntu-minimal ubuntu-standard 107s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 107s Need to get 2680 kB of archives. 107s After this operation, 23.6 kB of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 108s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 108s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB] 108s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB] 108s Fetched 2680 kB in 1s (3503 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 108s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 108s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 108s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 108s wget depends on libssl3 (>= 3.0.0). 108s tnftp depends on libssl3 (>= 3.0.0). 108s tcpdump depends on libssl3 (>= 3.0.0). 108s systemd-resolved depends on libssl3 (>= 3.0.0). 108s systemd depends on libssl3 (>= 3.0.0). 108s sudo depends on libssl3 (>= 3.0.0). 108s s390-tools depends on libssl3 (>= 3.0.0). 108s rsync depends on libssl3 (>= 3.0.0). 108s python3-cryptography depends on libssl3 (>= 3.0.0). 108s openssh-server depends on libssl3 (>= 3.0.10). 108s openssh-client depends on libssl3 (>= 3.0.10). 108s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 108s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 108s libssh-4:s390x depends on libssl3 (>= 3.0.0). 108s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 108s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 108s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 108s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 108s libnvme1 depends on libssl3 (>= 3.0.0). 108s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 108s libkmod2:s390x depends on libssl3 (>= 3.0.0). 108s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 108s libcurl4:s390x depends on libssl3 (>= 3.0.0). 108s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 108s kmod depends on libssl3 (>= 3.0.0). 108s dhcpcd-base depends on libssl3 (>= 3.0.0). 108s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 108s 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 108s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 108s Selecting previously unselected package libssl3t64:s390x. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 108s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 108s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 108s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ... 108s Unpacking ubuntu-minimal (1.536) over (1.535) ... 108s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ... 108s Unpacking ubuntu-standard (1.536) over (1.535) ... 108s Setting up ubuntu-minimal (1.536) ... 108s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 108s Setting up ubuntu-standard (1.536) ... 108s Setting up openssl (3.0.13-0ubuntu1) ... 108s Processing triggers for man-db (2.12.0-3) ... 109s Processing triggers for libc-bin (2.39-0ubuntu2) ... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 110s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 110s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 110s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 110s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 111s Reading package lists... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s Calculating upgrade... 111s The following packages have been kept back: 111s curl 111s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 111s Reading package lists... 111s Building dependency tree... 112s Reading state information... 112s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 114s autopkgtest [19:04:31]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 114s autopkgtest [19:04:31]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-variantannotation 116s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/universe r-bioc-variantannotation 1.48.1-1build1 (dsc) [2706 B] 116s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe r-bioc-variantannotation 1.48.1-1build1 (tar) [1887 kB] 116s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe r-bioc-variantannotation 1.48.1-1build1 (diff) [8024 B] 116s gpgv: Signature made Sat Mar 16 06:57:56 2024 UTC 116s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 116s gpgv: issuer "steve.langasek@ubuntu.com" 116s gpgv: Can't check signature: No public key 116s dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.48.1-1build1.dsc: no acceptable signature found 116s autopkgtest [19:04:33]: testing package r-bioc-variantannotation version 1.48.1-1build1 117s autopkgtest [19:04:34]: build not needed 124s autopkgtest [19:04:41]: test pkg-r-autopkgtest: preparing testbed 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s Starting pkgProblemResolver with broken count: 0 127s Starting 2 pkgProblemResolver with broken count: 0 127s Done 128s The following additional packages will be installed: 128s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl 128s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 128s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 128s g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 128s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 128s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 128s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 128s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 128s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 128s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 128s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl 128s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 128s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 128s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 128s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 128s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 128s libjs-popper.js libjs-prettify libjs-sifter.js 128s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 128s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 128s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 128s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 128s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 128s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 128s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 128s libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 128s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 128s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 128s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 128s r-base-dev r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 128s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 128s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 128s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 128s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 128s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 128s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 128s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 128s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 128s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 128s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 128s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 128s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 128s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 128s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 128s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 128s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 128s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 128s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 128s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 128s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 128s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 128s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 128s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 128s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 128s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 128s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 128s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 128s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 128s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 128s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 128s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 128s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 128s x11-common xdg-utils zip zlib1g-dev 128s Suggested packages: 128s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 128s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 128s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 128s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 128s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 128s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 128s libboost-context1.83-dev libboost-contract1.83-dev 128s libboost-coroutine1.83-dev libboost-date-time1.83-dev 128s libboost-exception1.83-dev libboost-fiber1.83-dev 128s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 128s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 128s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 128s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 128s libboost-numpy1.83-dev libboost-program-options1.83-dev 128s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 128s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 128s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 128s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 128s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 128s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 128s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 128s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 128s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 128s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 128s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 128s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 128s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-ensembldb 128s r-bioc-experimenthub r-bioc-all r-cran-testthat r-bioc-affy r-bioc-deseq2 128s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 128s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 128s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 128s r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 128s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-dexseq 128s r-bioc-sparsematrixstats r-bioc-limma r-cran-hexbin r-bioc-rhdf5 128s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-kernsmooth r-cran-kernlab 128s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis 128s r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-magick r-cran-sf 128s r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins 128s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 128s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 128s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 128s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 128s texlive-latex-base-doc wp2latex 128s Recommended packages: 128s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 128s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-downlit 128s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 128s r-cran-webshot r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery 128s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 128s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 128s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-future 128s w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-hexbin 128s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 128s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 128s r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown r-cran-jpeg 128s r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate 128s r-cran-rgl r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 128s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-usethis 128s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 128s r-cran-dichromat r-cran-data.table r-cran-mockr r-cran-formattable 128s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 128s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 128s x11-xserver-utils 128s The following packages will be REMOVED: 128s libcurl4 libpsl5 128s The following NEW packages will be installed: 128s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 128s cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config 128s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 128s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 128s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 128s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 128s gfortran-s390x-linux-gnu icu-devtools javascript-common libasan8 libatomic1 128s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 128s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 128s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev 128s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 128s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 128s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 128s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 128s libjs-jquery-datatables libjs-jquery-datatables-extensions 128s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 128s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 128s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 128s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 128s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 128s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 128s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 128s libpng-dev libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 128s libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 128s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 128s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 128s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 128s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 128s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 128s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 128s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 128s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 128s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 128s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 128s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 128s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 128s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 128s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 128s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 128s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 128s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 128s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 128s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 128s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 128s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 128s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 128s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 128s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 128s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 128s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 128s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 128s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 128s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 128s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 128s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 128s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 128s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 128s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 128s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 128s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 128s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 128s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 128s x11-common xdg-utils zip zlib1g-dev 128s The following packages will be upgraded: 128s curl 128s 1 upgraded, 299 newly installed, 2 to remove and 0 not upgraded. 128s Need to get 469 MB/469 MB of archives. 128s After this operation, 1450 MB of additional disk space will be used. 128s Get:1 /tmp/autopkgtest.Op1gkE/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [780 B] 128s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB] 128s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB] 128s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB] 128s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 128s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 128s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 128s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 128s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 128s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 128s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 129s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 129s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 129s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 129s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 129s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 129s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 129s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 129s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 129s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 129s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 129s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 129s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 129s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 129s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 130s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 130s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 130s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 130s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 130s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 131s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 131s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 131s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 131s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 131s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 131s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 131s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 131s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 131s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 131s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 131s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 131s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 131s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 131s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 131s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 131s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 131s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 131s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 132s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 132s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 132s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 132s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 132s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 132s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 132s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 132s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 132s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 132s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 132s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 132s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 132s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 132s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 132s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 132s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 132s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 132s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 132s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 132s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 132s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 132s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 132s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 132s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 132s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 133s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 133s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 133s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 133s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 133s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 133s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 133s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 133s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 133s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 133s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 133s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 133s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 133s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 133s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 133s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 133s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 133s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 133s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 133s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 133s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 133s Get:94 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 133s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9 [66.4 kB] 133s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 133s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 133s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 133s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 133s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 133s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 133s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 133s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 134s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 134s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 134s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 134s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 134s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 134s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 134s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 134s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 134s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 134s Get:113 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 134s Get:114 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 134s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9 [41.6 kB] 134s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 134s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 134s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 134s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9 [65.0 kB] 134s Get:120 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 134s Get:121 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 134s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9 [132 kB] 134s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 134s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 134s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 134s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 134s Get:127 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 134s Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 134s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 134s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3 [49.3 kB] 134s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 134s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1 [186 kB] 134s Get:133 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 134s Get:134 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13 s390x 0.13.72+dfsg.1-1.1 [26.1 kB] 134s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 134s Get:136 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 134s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 134s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 134s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 136s Get:140 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 136s Get:141 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 136s Get:142 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 136s Get:143 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 136s Get:144 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 136s Get:145 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 136s Get:146 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 137s Get:147 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 137s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 137s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 137s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 137s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 137s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 137s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 137s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 138s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 138s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 138s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 138s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 138s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 138s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 138s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 138s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 138s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 138s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 138s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 138s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 138s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 138s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 138s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 138s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB] 138s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 138s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 138s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 138s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 138s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB] 138s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 138s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 138s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB] 138s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 138s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 138s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 138s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1 [794 kB] 138s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 139s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 139s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 139s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 139s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 139s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 139s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 140s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 140s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 140s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 140s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 140s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 140s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 140s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 140s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 140s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 140s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 140s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 140s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 140s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 140s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 140s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 140s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 140s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocversion all 3.18.1-1 [11.0 kB] 140s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 140s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 140s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 140s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 140s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 141s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 141s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 141s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1 [519 kB] 141s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 141s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 141s Get:217 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 141s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 141s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 141s Get:220 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 141s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 141s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 141s Get:223 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 141s Get:224 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 141s Get:225 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 141s Get:226 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 141s Get:227 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 141s Get:228 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 141s Get:229 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 141s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 141s Get:231 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 141s Get:232 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 141s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 141s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 141s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 141s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 141s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 141s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lazyeval s390x 0.2.2-1build1 [143 kB] 141s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 141s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dt all 0.31+dfsg-1 [265 kB] 141s Get:241 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 141s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 142s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 142s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 142s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 142s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 142s Get:247 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 142s Get:248 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 142s Get:249 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 142s Get:250 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 142s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 142s Get:252 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 142s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 142s Get:254 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 142s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9 [9353 kB] 142s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 143s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 143s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 146s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 146s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 146s Get:261 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 146s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 146s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 146s Get:264 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 146s Get:265 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 147s Get:266 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 147s Get:267 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-1 [1410 kB] 147s Get:268 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1 [3688 kB] 147s Get:269 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 147s Get:270 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 147s Get:271 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 147s Get:272 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 147s Get:273 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 147s Get:274 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 147s Get:275 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 147s Get:276 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 147s Get:277 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 147s Get:278 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 147s Get:279 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 147s Get:280 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 147s Get:281 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 148s Get:282 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-bsgenome all 1.70.2-1 [6975 kB] 148s Get:283 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 148s Get:284 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-survival s390x 3.5-8-1 [6161 kB] 148s Get:285 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-snpstats s390x 1.52.0+dfsg-1 [7253 kB] 148s Get:286 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-bioc-variantannotation s390x 1.48.1-1build1 [3578 kB] 149s Get:287 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-colorspace s390x 2.1-0+dfsg-1 [1540 kB] 149s Get:288 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-farver s390x 2.1.1-1 [1347 kB] 149s Get:289 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 149s Get:290 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB] 149s Get:291 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 149s Get:292 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-nlme s390x 3.1.164-1 [2268 kB] 149s Get:293 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 149s Get:294 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB] 149s Get:295 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-munsell all 0.5.0-2build1 [208 kB] 149s Get:296 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 149s Get:297 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB] 149s Get:298 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-scales all 1.3.0-1 [603 kB] 149s Get:299 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 149s Get:300 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-runit all 0.4.32-3 [283 kB] 150s Preconfiguring packages ... 150s Fetched 469 MB in 22s (21.8 MB/s) 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 150s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ... 150s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 150s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested: 150s wget depends on libpsl5 (>= 0.16.0). 150s libcurl4:s390x depends on libpsl5 (>= 0.16.0). 150s libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0). 150s 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 150s Removing libpsl5:s390x (0.21.2-1build1) ... 150s Selecting previously unselected package libpsl5t64:s390x. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52168 files and directories currently installed.) 150s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ... 150s Unpacking libpsl5t64:s390x (0.21.2-1.1) ... 150s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested: 150s s390-tools depends on libcurl4 (>= 7.16.2). 150s 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52174 files and directories currently installed.) 150s Removing libcurl4:s390x (8.5.0-2ubuntu2) ... 150s Selecting previously unselected package libcurl4t64:s390x. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52169 files and directories currently installed.) 150s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ... 150s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ... 150s Selecting previously unselected package libc-dev-bin. 150s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 150s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 150s Selecting previously unselected package linux-libc-dev:s390x. 150s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ... 150s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 151s Selecting previously unselected package libcrypt-dev:s390x. 151s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 151s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 151s Selecting previously unselected package libtirpc-dev:s390x. 151s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 151s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 151s Selecting previously unselected package libnsl-dev:s390x. 151s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ... 151s Unpacking libnsl-dev:s390x (1.3.0-3) ... 151s Selecting previously unselected package rpcsvc-proto. 151s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 151s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 151s Selecting previously unselected package libc6-dev:s390x. 151s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ... 151s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 151s Selecting previously unselected package libisl23:s390x. 151s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ... 151s Unpacking libisl23:s390x (0.26-3) ... 151s Selecting previously unselected package libmpc3:s390x. 151s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ... 151s Unpacking libmpc3:s390x (1.3.1-1) ... 151s Selecting previously unselected package cpp-13-s390x-linux-gnu. 151s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 151s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 151s Selecting previously unselected package cpp-13. 151s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 151s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 151s Selecting previously unselected package cpp-s390x-linux-gnu. 151s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 151s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 151s Selecting previously unselected package cpp. 151s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 151s Unpacking cpp (4:13.2.0-7ubuntu1) ... 151s Selecting previously unselected package libcc1-0:s390x. 151s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 151s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libgomp1:s390x. 151s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 151s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libitm1:s390x. 151s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ... 151s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libatomic1:s390x. 151s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 151s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libasan8:s390x. 151s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ... 151s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libubsan1:s390x. 151s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 151s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libgcc-13-dev:s390x. 151s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 151s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 151s Selecting previously unselected package gcc-13-s390x-linux-gnu. 151s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 151s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 152s Selecting previously unselected package gcc-13. 152s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 152s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 152s Selecting previously unselected package gcc-s390x-linux-gnu. 152s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 152s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 152s Selecting previously unselected package gcc. 152s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 152s Unpacking gcc (4:13.2.0-7ubuntu1) ... 152s Selecting previously unselected package libstdc++-13-dev:s390x. 152s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 152s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 152s Selecting previously unselected package g++-13-s390x-linux-gnu. 152s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 152s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 152s Selecting previously unselected package g++-13. 152s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ... 152s Unpacking g++-13 (13.2.0-17ubuntu2) ... 152s Selecting previously unselected package g++-s390x-linux-gnu. 152s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 152s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 152s Selecting previously unselected package g++. 152s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 152s Unpacking g++ (4:13.2.0-7ubuntu1) ... 152s Selecting previously unselected package build-essential. 152s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ... 152s Unpacking build-essential (12.10ubuntu1) ... 152s Selecting previously unselected package dctrl-tools. 152s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ... 152s Unpacking dctrl-tools (2.24-3build2) ... 152s Selecting previously unselected package libfreetype6:s390x. 152s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 152s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 152s Selecting previously unselected package fonts-dejavu-mono. 152s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 152s Unpacking fonts-dejavu-mono (2.37-8) ... 152s Selecting previously unselected package fonts-dejavu-core. 152s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 152s Unpacking fonts-dejavu-core (2.37-8) ... 152s Selecting previously unselected package fontconfig-config. 152s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 152s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 152s Selecting previously unselected package libfontconfig1:s390x. 152s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 152s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 152s Selecting previously unselected package fontconfig. 152s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 152s Unpacking fontconfig (2.15.0-1ubuntu1) ... 152s Selecting previously unselected package fonts-font-awesome. 152s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 152s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 153s Selecting previously unselected package fonts-glyphicons-halflings. 153s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 153s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 153s Selecting previously unselected package fonts-lmodern. 153s Preparing to unpack .../040-fonts-lmodern_2.005-1_all.deb ... 153s Unpacking fonts-lmodern (2.005-1) ... 153s Selecting previously unselected package fonts-mathjax. 153s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 153s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 153s Selecting previously unselected package libgfortran5:s390x. 153s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 153s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 153s Selecting previously unselected package libgfortran-13-dev:s390x. 153s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 153s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 153s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 153s Preparing to unpack .../044-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 153s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 153s Selecting previously unselected package gfortran-13. 153s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 153s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 153s Selecting previously unselected package gfortran-s390x-linux-gnu. 153s Preparing to unpack .../046-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 153s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 153s Selecting previously unselected package gfortran. 153s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 153s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 153s Selecting previously unselected package icu-devtools. 153s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_s390x.deb ... 153s Unpacking icu-devtools (74.2-1ubuntu1) ... 153s Selecting previously unselected package javascript-common. 153s Preparing to unpack .../049-javascript-common_11+nmu1_all.deb ... 153s Unpacking javascript-common (11+nmu1) ... 153s Selecting previously unselected package libio-string-perl. 153s Preparing to unpack .../050-libio-string-perl_1.08-4_all.deb ... 153s Unpacking libio-string-perl (1.08-4) ... 153s Selecting previously unselected package liblatex-tounicode-perl. 153s Preparing to unpack .../051-liblatex-tounicode-perl_0.54-2_all.deb ... 153s Unpacking liblatex-tounicode-perl (0.54-2) ... 153s Selecting previously unselected package libbibtex-parser-perl. 153s Preparing to unpack .../052-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 153s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 153s Selecting previously unselected package libblas3:s390x. 153s Preparing to unpack .../053-libblas3_3.12.0-3_s390x.deb ... 153s Unpacking libblas3:s390x (3.12.0-3) ... 153s Selecting previously unselected package libblas-dev:s390x. 153s Preparing to unpack .../054-libblas-dev_3.12.0-3_s390x.deb ... 153s Unpacking libblas-dev:s390x (3.12.0-3) ... 153s Selecting previously unselected package libboost1.83-dev:s390x. 153s Preparing to unpack .../055-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 153s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 155s Selecting previously unselected package libboost-dev:s390x. 155s Preparing to unpack .../056-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 155s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 155s Selecting previously unselected package libbz2-dev:s390x. 155s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 155s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 155s Selecting previously unselected package libpixman-1-0:s390x. 155s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_s390x.deb ... 155s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 155s Selecting previously unselected package libxcb-render0:s390x. 155s Preparing to unpack .../059-libxcb-render0_1.15-1_s390x.deb ... 155s Unpacking libxcb-render0:s390x (1.15-1) ... 155s Selecting previously unselected package libxcb-shm0:s390x. 155s Preparing to unpack .../060-libxcb-shm0_1.15-1_s390x.deb ... 155s Unpacking libxcb-shm0:s390x (1.15-1) ... 155s Selecting previously unselected package libxrender1:s390x. 155s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 155s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 155s Selecting previously unselected package libcairo2:s390x. 155s Preparing to unpack .../062-libcairo2_1.18.0-1_s390x.deb ... 155s Unpacking libcairo2:s390x (1.18.0-1) ... 155s Selecting previously unselected package libdatrie1:s390x. 155s Preparing to unpack .../063-libdatrie1_0.2.13-3_s390x.deb ... 155s Unpacking libdatrie1:s390x (0.2.13-3) ... 155s Selecting previously unselected package libdeflate0:s390x. 155s Preparing to unpack .../064-libdeflate0_1.19-1_s390x.deb ... 155s Unpacking libdeflate0:s390x (1.19-1) ... 155s Selecting previously unselected package libgraphite2-3:s390x. 155s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_s390x.deb ... 155s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 155s Selecting previously unselected package libharfbuzz0b:s390x. 155s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_s390x.deb ... 155s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 155s Selecting previously unselected package x11-common. 155s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 155s Unpacking x11-common (1:7.7+23ubuntu2) ... 155s Selecting previously unselected package libice6:s390x. 155s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_s390x.deb ... 155s Unpacking libice6:s390x (2:1.0.10-1build2) ... 155s Selecting previously unselected package libicu-dev:s390x. 155s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_s390x.deb ... 155s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 156s Selecting previously unselected package libjpeg-turbo8:s390x. 156s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 156s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 156s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 156s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 156s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 156s Selecting previously unselected package libjpeg8:s390x. 156s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_s390x.deb ... 156s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 156s Selecting previously unselected package libjpeg8-dev:s390x. 156s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 156s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 156s Selecting previously unselected package libjpeg-dev:s390x. 156s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 156s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 156s Selecting previously unselected package libjs-bootstrap. 156s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 156s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 156s Selecting previously unselected package libjs-popper.js. 156s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6_all.deb ... 156s Unpacking libjs-popper.js (1.16.1+ds-6) ... 156s Selecting previously unselected package libjs-bootstrap4. 156s Preparing to unpack .../077-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 156s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 156s Selecting previously unselected package libjs-d3. 156s Preparing to unpack .../078-libjs-d3_3.5.17-4_all.deb ... 156s Unpacking libjs-d3 (3.5.17-4) ... 156s Selecting previously unselected package libjs-es5-shim. 156s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ... 156s Unpacking libjs-es5-shim (4.6.7-2) ... 156s Selecting previously unselected package libjs-highlight.js. 156s Preparing to unpack .../080-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 156s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 156s Selecting previously unselected package libjs-jquery. 156s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 156s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 156s Selecting previously unselected package libjs-jquery-datatables. 156s Preparing to unpack .../082-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 156s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 156s Selecting previously unselected package libjs-jquery-datatables-extensions. 156s Preparing to unpack .../083-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 156s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 156s Selecting previously unselected package libjs-sifter.js. 156s Preparing to unpack .../084-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 156s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 156s Selecting previously unselected package libjs-microplugin.js. 156s 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.../090-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 156s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 156s Selecting previously unselected package libkpathsea6:s390x. 156s Preparing to unpack .../091-libkpathsea6_2023.20230311.66589-9_s390x.deb ... 156s Unpacking libkpathsea6:s390x (2023.20230311.66589-9) ... 156s Selecting previously unselected package liblapack3:s390x. 156s Preparing to unpack .../092-liblapack3_3.12.0-3_s390x.deb ... 156s Unpacking liblapack3:s390x (3.12.0-3) ... 156s Selecting previously unselected package liblapack-dev:s390x. 156s Preparing to unpack .../093-liblapack-dev_3.12.0-3_s390x.deb ... 156s Unpacking liblapack-dev:s390x (3.12.0-3) ... 156s Selecting previously unselected package liblua5.4-0:s390x. 156s Preparing to unpack .../094-liblua5.4-0_5.4.6-3_s390x.deb ... 156s Unpacking liblua5.4-0:s390x (5.4.6-3) ... 157s Selecting previously unselected package libncurses-dev:s390x. 157s Preparing to unpack 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.../100-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 157s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 157s Selecting previously unselected package libpaper1:s390x. 157s Preparing to unpack .../101-libpaper1_1.1.29_s390x.deb ... 157s Unpacking libpaper1:s390x (1.1.29) ... 157s Selecting previously unselected package libpaper-utils. 157s Preparing to unpack .../102-libpaper-utils_1.1.29_s390x.deb ... 157s Unpacking libpaper-utils (1.1.29) ... 157s Selecting previously unselected package libpcre2-16-0:s390x. 157s Preparing to unpack .../103-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ... 157s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ... 157s Selecting previously unselected package libpcre2-32-0:s390x. 157s Preparing to unpack .../104-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ... 157s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ... 157s Selecting previously unselected package libpcre2-posix3:s390x. 157s Preparing to unpack .../105-libpcre2-posix3_10.42-4ubuntu1_s390x.deb ... 157s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ... 157s Selecting previously unselected package libpcre2-dev:s390x. 157s Preparing to unpack .../106-libpcre2-dev_10.42-4ubuntu1_s390x.deb ... 157s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ... 157s Selecting previously unselected package libpkgconf3:s390x. 157s Preparing to unpack .../107-libpkgconf3_1.8.1-2_s390x.deb ... 157s Unpacking libpkgconf3:s390x (1.8.1-2) ... 157s Selecting previously unselected package zlib1g-dev:s390x. 157s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 157s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 157s Selecting previously unselected package libpng-dev:s390x. 157s Preparing to unpack .../109-libpng-dev_1.6.43-1_s390x.deb ... 157s Unpacking libpng-dev:s390x (1.6.43-1) ... 157s Selecting previously unselected package libpotrace0:s390x. 157s Preparing to unpack .../110-libpotrace0_1.16-2_s390x.deb ... 157s Unpacking libpotrace0:s390x (1.16-2) ... 157s Selecting previously unselected package libptexenc1:s390x. 157s Preparing to unpack .../111-libptexenc1_2023.20230311.66589-9_s390x.deb ... 157s Unpacking libptexenc1:s390x (2023.20230311.66589-9) ... 157s Selecting previously unselected package libreadline-dev:s390x. 157s Preparing to unpack .../112-libreadline-dev_8.2-3_s390x.deb ... 157s Unpacking libreadline-dev:s390x (8.2-3) ... 157s Selecting previously unselected package libsharpyuv0:s390x. 157s Preparing to unpack .../113-libsharpyuv0_1.3.2-0.4_s390x.deb ... 157s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 157s Selecting previously unselected package libsm6:s390x. 157s Preparing to unpack .../114-libsm6_2%3a1.2.3-1build2_s390x.deb ... 157s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 157s Selecting previously unselected package libsynctex2:s390x. 157s Preparing to unpack .../115-libsynctex2_2023.20230311.66589-9_s390x.deb ... 157s Unpacking libsynctex2:s390x (2023.20230311.66589-9) ... 157s Selecting previously unselected package libtcl8.6:s390x. 157s Preparing to unpack .../116-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 157s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 157s Selecting previously unselected package libteckit0:s390x. 157s Preparing to unpack .../117-libteckit0_2.5.12+ds1-1_s390x.deb ... 157s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 157s Selecting previously unselected package libtexlua53-5:s390x. 157s Preparing to unpack .../118-libtexlua53-5_2023.20230311.66589-9_s390x.deb ... 157s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9) ... 157s Selecting previously unselected package libjbig0:s390x. 157s Preparing to unpack .../119-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 157s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 157s Selecting previously unselected package libwebp7:s390x. 157s Preparing to unpack .../120-libwebp7_1.3.2-0.4_s390x.deb ... 157s Unpacking libwebp7:s390x (1.3.2-0.4) ... 157s Selecting previously unselected package libtiff6:s390x. 157s Preparing to unpack .../121-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 157s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 157s Selecting previously unselected package libxft2:s390x. 157s Preparing to unpack .../122-libxft2_2.3.6-1_s390x.deb ... 157s Unpacking libxft2:s390x (2.3.6-1) ... 157s Selecting previously unselected package libxss1:s390x. 157s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build2_s390x.deb ... 157s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 157s Selecting previously unselected package libtk8.6:s390x. 157s Preparing to unpack .../124-libtk8.6_8.6.13-2_s390x.deb ... 157s Unpacking libtk8.6:s390x (8.6.13-2) ... 157s Selecting previously unselected package libxt6:s390x. 157s Preparing to unpack .../125-libxt6_1%3a1.2.1-1.1_s390x.deb ... 157s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 157s Selecting previously unselected package libxmu6:s390x. 157s Preparing to unpack .../126-libxmu6_2%3a1.1.3-3_s390x.deb ... 157s Unpacking libxmu6:s390x (2:1.1.3-3) ... 157s Selecting previously unselected package libxpm4:s390x. 157s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1_s390x.deb ... 157s Unpacking libxpm4:s390x (1:3.5.17-1) ... 157s Selecting previously unselected package libxaw7:s390x. 157s Preparing to unpack .../128-libxaw7_2%3a1.0.14-1_s390x.deb ... 157s Unpacking libxaw7:s390x (2:1.0.14-1) ... 157s Selecting previously unselected package libxi6:s390x. 157s Preparing to unpack .../129-libxi6_2%3a1.8.1-1_s390x.deb ... 157s Unpacking libxi6:s390x (2:1.8.1-1) ... 157s Selecting previously unselected package libzzip-0-13:s390x. 157s Preparing to unpack .../130-libzzip-0-13_0.13.72+dfsg.1-1.1_s390x.deb ... 157s Unpacking libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 157s Selecting previously unselected package node-bootstrap-sass. 157s Preparing to unpack .../131-node-bootstrap-sass_3.4.3-2_all.deb ... 157s Unpacking node-bootstrap-sass (3.4.3-2) ... 157s Selecting previously unselected package node-html5shiv. 157s Preparing to unpack .../132-node-html5shiv_3.7.3+dfsg-5_all.deb ... 157s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 157s Selecting previously unselected package node-normalize.css. 157s Preparing to unpack .../133-node-normalize.css_8.0.1-5_all.deb ... 157s Unpacking node-normalize.css (8.0.1-5) ... 157s Selecting previously unselected package pandoc-data. 157s Preparing to unpack .../134-pandoc-data_3.1.3-1_all.deb ... 157s Unpacking pandoc-data (3.1.3-1) ... 157s Selecting previously unselected package pandoc. 157s Preparing to unpack .../135-pandoc_3.1.3+ds-2_s390x.deb ... 157s Unpacking pandoc (3.1.3+ds-2) ... 159s Selecting previously unselected package pkgconf-bin. 159s Preparing to unpack .../136-pkgconf-bin_1.8.1-2_s390x.deb ... 159s Unpacking pkgconf-bin (1.8.1-2) ... 159s Selecting previously unselected package pkgconf:s390x. 159s Preparing to unpack .../137-pkgconf_1.8.1-2_s390x.deb ... 159s Unpacking pkgconf:s390x (1.8.1-2) ... 159s Selecting previously unselected package pkg-config:s390x. 159s Preparing to unpack .../138-pkg-config_1.8.1-2_s390x.deb ... 159s Unpacking pkg-config:s390x (1.8.1-2) ... 159s Selecting previously unselected package zip. 159s Preparing to unpack .../139-zip_3.0-13_s390x.deb ... 159s Unpacking zip (3.0-13) ... 159s Selecting previously unselected package unzip. 159s Preparing to unpack .../140-unzip_6.0-28ubuntu3_s390x.deb ... 159s Unpacking unzip (6.0-28ubuntu3) ... 159s Selecting previously unselected package xdg-utils. 159s Preparing to unpack .../141-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 159s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 159s Selecting previously unselected package r-base-core. 159s Preparing to unpack .../142-r-base-core_4.3.2-1build1_s390x.deb ... 159s Unpacking r-base-core (4.3.2-1build1) ... 159s Selecting previously unselected package liblzma-dev:s390x. 159s Preparing to unpack .../143-liblzma-dev_5.4.5-0.3_s390x.deb ... 159s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 159s Selecting previously unselected package r-base-dev. 159s Preparing to unpack .../144-r-base-dev_4.3.2-1build1_all.deb ... 159s Unpacking r-base-dev (4.3.2-1build1) ... 159s Selecting previously unselected package pkg-r-autopkgtest. 159s Preparing to unpack .../145-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 159s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 159s Selecting previously unselected package r-bioc-biocgenerics. 159s Preparing to unpack .../146-r-bioc-biocgenerics_0.48.1-2_all.deb ... 159s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 159s Selecting previously unselected package r-bioc-biobase. 159s Preparing to unpack .../147-r-bioc-biobase_2.62.0-1_s390x.deb ... 159s Unpacking r-bioc-biobase (2.62.0-1) ... 159s Selecting previously unselected package r-bioc-s4vectors. 159s Preparing to unpack .../148-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 159s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 159s Selecting previously unselected package r-bioc-iranges. 159s Preparing to unpack .../149-r-bioc-iranges_2.36.0-1_s390x.deb ... 159s Unpacking r-bioc-iranges (2.36.0-1) ... 159s Selecting previously unselected package r-cran-dbi. 159s Preparing to unpack .../150-r-cran-dbi_1.2.2-1_all.deb ... 159s Unpacking r-cran-dbi (1.2.2-1) ... 159s Selecting previously unselected package r-cran-bit. 159s Preparing to unpack .../151-r-cran-bit_4.0.5-1_s390x.deb ... 159s Unpacking r-cran-bit (4.0.5-1) ... 159s Selecting previously unselected package r-cran-bit64. 159s Preparing to unpack .../152-r-cran-bit64_4.0.5-1_s390x.deb ... 159s Unpacking r-cran-bit64 (4.0.5-1) ... 159s Selecting previously unselected package r-cran-rlang. 159s Preparing to unpack .../153-r-cran-rlang_1.1.3-1_s390x.deb ... 159s Unpacking r-cran-rlang (1.1.3-1) ... 160s Selecting previously unselected package r-cran-cli. 160s Preparing to unpack .../154-r-cran-cli_3.6.2-1_s390x.deb ... 160s Unpacking r-cran-cli (3.6.2-1) ... 160s Selecting previously unselected package r-cran-glue. 160s Preparing to unpack .../155-r-cran-glue_1.7.0-1_s390x.deb ... 160s Unpacking r-cran-glue (1.7.0-1) ... 160s Selecting previously unselected package r-cran-lifecycle. 160s Preparing to unpack .../156-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 160s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 160s Selecting previously unselected package r-cran-vctrs. 160s Preparing to unpack .../157-r-cran-vctrs_0.6.5-1_s390x.deb ... 160s Unpacking r-cran-vctrs (0.6.5-1) ... 160s Selecting previously unselected package r-cran-blob. 160s Preparing to unpack .../158-r-cran-blob_1.2.4-1_all.deb ... 160s Unpacking r-cran-blob (1.2.4-1) ... 160s Selecting previously unselected package r-cran-fastmap. 160s Preparing to unpack .../159-r-cran-fastmap_1.1.1-1_s390x.deb ... 160s Unpacking r-cran-fastmap (1.1.1-1) ... 160s Selecting previously unselected package r-cran-cachem. 160s Preparing to unpack .../160-r-cran-cachem_1.0.8-1_s390x.deb ... 160s Unpacking r-cran-cachem (1.0.8-1) ... 160s Selecting previously unselected package r-cran-memoise. 160s Preparing to unpack .../161-r-cran-memoise_2.0.1-1_all.deb ... 160s Unpacking r-cran-memoise (2.0.1-1) ... 160s Selecting previously unselected package r-cran-pkgconfig. 160s Preparing to unpack .../162-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 160s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 160s Selecting previously unselected package r-cran-plogr. 160s Preparing to unpack .../163-r-cran-plogr_0.2.0-3build1_all.deb ... 160s Unpacking r-cran-plogr (0.2.0-3build1) ... 160s Selecting previously unselected package r-cran-cpp11. 160s Preparing to unpack .../164-r-cran-cpp11_0.4.7-1_all.deb ... 160s Unpacking r-cran-cpp11 (0.4.7-1) ... 160s Selecting previously unselected package r-cran-rsqlite. 160s Preparing to unpack .../165-r-cran-rsqlite_2.3.4-1_s390x.deb ... 160s Unpacking r-cran-rsqlite (2.3.4-1) ... 160s Selecting previously unselected package r-cran-curl. 160s Preparing to unpack .../166-r-cran-curl_5.2.0+dfsg-1_s390x.deb ... 160s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 160s Selecting previously unselected package r-cran-jsonlite. 160s Preparing to unpack .../167-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 160s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 160s Selecting previously unselected package r-cran-mime. 160s Preparing to unpack .../168-r-cran-mime_0.12-1_s390x.deb ... 160s Unpacking r-cran-mime (0.12-1) ... 160s Selecting previously unselected package r-cran-sys. 160s Preparing to unpack .../169-r-cran-sys_3.4.2-1_s390x.deb ... 160s Unpacking r-cran-sys (3.4.2-1) ... 160s Selecting previously unselected package r-cran-askpass. 160s Preparing to unpack .../170-r-cran-askpass_1.2.0-1_s390x.deb ... 160s Unpacking r-cran-askpass (1.2.0-1) ... 160s Selecting previously unselected package r-cran-openssl. 160s Preparing to unpack .../171-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ... 160s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 160s Selecting previously unselected package r-cran-r6. 160s Preparing to unpack .../172-r-cran-r6_2.5.1-1_all.deb ... 160s Unpacking r-cran-r6 (2.5.1-1) ... 160s Selecting previously unselected package r-cran-httr. 160s Preparing to unpack .../173-r-cran-httr_1.4.7+dfsg-1_all.deb ... 160s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 160s Selecting previously unselected package r-cran-png. 160s Preparing to unpack .../174-r-cran-png_0.1-8-1_s390x.deb ... 160s Unpacking r-cran-png (0.1-8-1) ... 160s Selecting previously unselected package r-bioc-zlibbioc. 160s Preparing to unpack .../175-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 160s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 160s Selecting previously unselected package r-bioc-xvector. 160s Preparing to unpack .../176-r-bioc-xvector_0.42.0-1_s390x.deb ... 160s Unpacking r-bioc-xvector (0.42.0-1) ... 160s Selecting previously unselected package r-cran-bitops. 160s Preparing to unpack .../177-r-cran-bitops_1.0-7-1_s390x.deb ... 160s Unpacking r-cran-bitops (1.0-7-1) ... 160s Selecting previously unselected package r-cran-rcurl. 160s Preparing to unpack .../178-r-cran-rcurl_1.98-1.14+dfsg-1_s390x.deb ... 160s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 160s Selecting previously unselected package r-bioc-genomeinfodbdata. 160s Preparing to unpack .../179-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 160s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 160s Selecting previously unselected package r-bioc-genomeinfodb. 160s Preparing to unpack .../180-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 160s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 160s Selecting previously unselected package r-cran-crayon. 160s Preparing to unpack .../181-r-cran-crayon_1.5.2-1_all.deb ... 160s Unpacking r-cran-crayon (1.5.2-1) ... 160s Selecting previously unselected package r-bioc-biostrings. 160s Preparing to unpack .../182-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 160s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 160s Selecting previously unselected package r-bioc-keggrest. 160s Preparing to unpack .../183-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 160s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 160s Selecting previously unselected package r-bioc-annotationdbi. 160s Preparing to unpack .../184-r-bioc-annotationdbi_1.64.1-1_all.deb ... 160s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 160s Selecting previously unselected package r-cran-generics. 161s Preparing to unpack .../185-r-cran-generics_0.1.3-1_all.deb ... 161s Unpacking r-cran-generics (0.1.3-1) ... 161s Selecting previously unselected package r-cran-magrittr. 161s Preparing to unpack .../186-r-cran-magrittr_2.0.3-1_s390x.deb ... 161s Unpacking r-cran-magrittr (2.0.3-1) ... 161s Selecting previously unselected package r-cran-fansi. 161s Preparing to unpack .../187-r-cran-fansi_1.0.5-1_s390x.deb ... 161s Unpacking r-cran-fansi (1.0.5-1) ... 161s Selecting previously unselected package r-cran-utf8. 161s Preparing to unpack .../188-r-cran-utf8_1.2.4-1_s390x.deb ... 161s Unpacking r-cran-utf8 (1.2.4-1) ... 161s Selecting previously unselected package r-cran-pillar. 161s Preparing to unpack .../189-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 161s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 161s Selecting previously unselected package r-cran-tibble. 161s Preparing to unpack .../190-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 161s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 161s Selecting previously unselected package r-cran-withr. 161s Preparing to unpack .../191-r-cran-withr_2.5.0-1_all.deb ... 161s Unpacking r-cran-withr (2.5.0-1) ... 161s Selecting previously unselected package r-cran-tidyselect. 161s Preparing to unpack .../192-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 161s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 161s Selecting previously unselected package r-cran-dplyr. 161s Preparing to unpack .../193-r-cran-dplyr_1.1.4-1_s390x.deb ... 161s Unpacking r-cran-dplyr (1.1.4-1) ... 161s Selecting previously unselected package r-cran-purrr. 161s Preparing to unpack .../194-r-cran-purrr_1.0.2-1_s390x.deb ... 161s Unpacking r-cran-purrr (1.0.2-1) ... 161s Selecting previously unselected package r-cran-stringi. 161s Preparing to unpack .../195-r-cran-stringi_1.8.3-1_s390x.deb ... 161s Unpacking r-cran-stringi (1.8.3-1) ... 161s Selecting previously unselected package r-cran-stringr. 161s Preparing to unpack .../196-r-cran-stringr_1.5.1-1_all.deb ... 161s Unpacking r-cran-stringr (1.5.1-1) ... 161s Selecting previously unselected package r-cran-tidyr. 161s Preparing to unpack .../197-r-cran-tidyr_1.3.1-1_s390x.deb ... 161s Unpacking r-cran-tidyr (1.3.1-1) ... 161s Selecting previously unselected package r-cran-dbplyr. 161s Preparing to unpack .../198-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 161s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 161s Selecting previously unselected package r-cran-filelock. 161s Preparing to unpack .../199-r-cran-filelock_1.0.3-1_s390x.deb ... 161s Unpacking r-cran-filelock (1.0.3-1) ... 161s Selecting previously unselected package r-bioc-biocfilecache. 161s Preparing to unpack .../200-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 161s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 161s Selecting previously unselected package r-cran-biocmanager. 161s Preparing to unpack .../201-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 161s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 161s Selecting previously unselected package r-bioc-biocversion. 161s Preparing to unpack .../202-r-bioc-biocversion_3.18.1-1_all.deb ... 161s Unpacking r-bioc-biocversion (3.18.1-1) ... 161s Selecting previously unselected package r-cran-rappdirs. 161s Preparing to unpack .../203-r-cran-rappdirs_0.3.3-1_s390x.deb ... 161s Unpacking r-cran-rappdirs (0.3.3-1) ... 161s Selecting previously unselected package r-cran-yaml. 161s Preparing to unpack .../204-r-cran-yaml_2.3.8-1_s390x.deb ... 161s Unpacking r-cran-yaml (2.3.8-1) ... 161s Selecting previously unselected package r-cran-littler. 161s Preparing to unpack .../205-r-cran-littler_0.3.19-1_s390x.deb ... 161s Unpacking r-cran-littler (0.3.19-1) ... 161s Selecting previously unselected package r-cran-pkgkitten. 161s Preparing to unpack .../206-r-cran-pkgkitten_0.2.3-1_all.deb ... 161s Unpacking r-cran-pkgkitten (0.2.3-1) ... 161s Selecting previously unselected package r-cran-rcpp. 161s Preparing to unpack .../207-r-cran-rcpp_1.0.12-1_s390x.deb ... 161s Unpacking r-cran-rcpp (1.0.12-1) ... 161s Selecting previously unselected package r-cran-later. 161s Preparing to unpack .../208-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 161s Unpacking r-cran-later (1.3.2+dfsg-1) ... 161s Selecting previously unselected package r-cran-promises. 161s Preparing to unpack .../209-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 161s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 161s Selecting previously unselected package r-cran-httpuv. 161s Preparing to unpack .../210-r-cran-httpuv_1.6.14+dfsg-1_s390x.deb ... 161s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 161s Selecting previously unselected package r-cran-xtable. 161s Preparing to unpack .../211-r-cran-xtable_1%3a1.8-4-2_all.deb ... 161s Unpacking r-cran-xtable (1:1.8-4-2) ... 161s Selecting previously unselected package r-cran-base64enc. 161s Preparing to unpack .../212-r-cran-base64enc_0.1-3-3_s390x.deb ... 161s Unpacking r-cran-base64enc (0.1-3-3) ... 161s Selecting previously unselected package r-cran-digest. 161s Preparing to unpack .../213-r-cran-digest_0.6.34-1_s390x.deb ... 161s Unpacking r-cran-digest (0.6.34-1) ... 161s Selecting previously unselected package r-cran-ellipsis. 161s Preparing to unpack .../214-r-cran-ellipsis_0.3.2-2_s390x.deb ... 161s Unpacking r-cran-ellipsis (0.3.2-2) ... 161s Selecting previously unselected package r-cran-htmltools. 161s Preparing to unpack .../215-r-cran-htmltools_0.5.7-1_s390x.deb ... 161s Unpacking r-cran-htmltools (0.5.7-1) ... 161s Selecting previously unselected package r-cran-fontawesome. 161s Preparing to unpack .../216-r-cran-fontawesome_0.5.2-1_all.deb ... 161s Unpacking r-cran-fontawesome (0.5.2-1) ... 161s Selecting previously unselected package r-cran-sourcetools. 161s Preparing to unpack .../217-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 161s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 162s Selecting previously unselected package r-cran-commonmark. 162s Preparing to unpack .../218-r-cran-commonmark_1.9.1-1_s390x.deb ... 162s Unpacking r-cran-commonmark (1.9.1-1) ... 162s Selecting previously unselected package r-cran-jquerylib. 162s Preparing to unpack .../219-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 162s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 162s Selecting previously unselected package r-cran-fs. 162s Preparing to unpack .../220-r-cran-fs_1.6.3+dfsg-1_s390x.deb ... 162s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 162s Selecting previously unselected package r-cran-sass. 162s Preparing to unpack .../221-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 162s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 162s Selecting previously unselected package r-cran-bslib. 162s Preparing to unpack .../222-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 162s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 162s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 162s Preparing to unpack .../223-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 162s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 162s Selecting previously unselected package r-cran-shiny. 162s Preparing to unpack .../224-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 162s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 162s Selecting previously unselected package r-cran-evaluate. 162s Preparing to unpack .../225-r-cran-evaluate_0.23-1_all.deb ... 162s Unpacking r-cran-evaluate (0.23-1) ... 162s Selecting previously unselected package r-cran-xfun. 162s Preparing to unpack .../226-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 162s Unpacking r-cran-xfun (0.41+dfsg-1) ... 162s Selecting previously unselected package r-cran-highr. 162s Preparing to unpack .../227-r-cran-highr_0.10+dfsg-1_all.deb ... 162s Unpacking r-cran-highr (0.10+dfsg-1) ... 162s Selecting previously unselected package libjs-mathjax. 162s Preparing to unpack .../228-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 162s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 163s Selecting previously unselected package r-cran-knitr. 163s Preparing to unpack .../229-r-cran-knitr_1.45+dfsg-1_all.deb ... 163s Unpacking r-cran-knitr (1.45+dfsg-1) ... 163s Selecting previously unselected package r-cran-tinytex. 163s Preparing to unpack .../230-r-cran-tinytex_0.49-1_all.deb ... 163s Unpacking r-cran-tinytex (0.49-1) ... 163s Selecting previously unselected package libjs-modernizr. 163s Preparing to unpack .../231-libjs-modernizr_2.6.2+ds1-5_all.deb ... 163s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 163s Selecting previously unselected package r-cran-rmarkdown. 163s Preparing to unpack .../232-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 163s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 163s Selecting previously unselected package r-cran-htmlwidgets. 163s Preparing to unpack .../233-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 163s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 163s Selecting previously unselected package r-cran-lazyeval. 163s Preparing to unpack .../234-r-cran-lazyeval_0.2.2-1build1_s390x.deb ... 163s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 163s Selecting previously unselected package r-cran-crosstalk. 163s Preparing to unpack .../235-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 163s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 163s Selecting previously unselected package r-cran-dt. 163s Preparing to unpack .../236-r-cran-dt_0.31+dfsg-1_all.deb ... 163s Unpacking r-cran-dt (0.31+dfsg-1) ... 163s Selecting previously unselected package r-bioc-interactivedisplaybase. 163s Preparing to unpack .../237-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 163s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 163s Selecting previously unselected package r-bioc-annotationhub. 163s Preparing to unpack .../238-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 163s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 163s Selecting previously unselected package r-bioc-biocio. 163s Preparing to unpack .../239-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 163s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 163s Selecting previously unselected package r-cran-formatr. 163s Preparing to unpack .../240-r-cran-formatr_1.14-1_all.deb ... 163s Unpacking r-cran-formatr (1.14-1) ... 163s Selecting previously unselected package r-cran-lambda.r. 163s Preparing to unpack .../241-r-cran-lambda.r_1.2.4-2build1_all.deb ... 163s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 163s Selecting previously unselected package r-cran-futile.options. 163s Preparing to unpack .../242-r-cran-futile.options_1.0.1-3build1_all.deb ... 163s Unpacking r-cran-futile.options (1.0.1-3build1) ... 163s Selecting previously unselected package r-cran-futile.logger. 163s Preparing to unpack .../243-r-cran-futile.logger_1.4.3-4build1_all.deb ... 163s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 163s Selecting previously unselected package r-cran-snow. 163s Preparing to unpack .../244-r-cran-snow_1%3a0.4.4-2_all.deb ... 163s Unpacking r-cran-snow (1:0.4.4-2) ... 163s Selecting previously unselected package r-cran-codetools. 163s Preparing to unpack .../245-r-cran-codetools_0.2-19-1_all.deb ... 163s Unpacking r-cran-codetools (0.2-19-1) ... 163s Selecting previously unselected package r-cran-bh. 163s Preparing to unpack .../246-r-cran-bh_1.84.0-1_all.deb ... 163s Unpacking r-cran-bh (1.84.0-1) ... 163s Selecting previously unselected package r-bioc-biocparallel. 163s Preparing to unpack .../247-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 163s Unpacking r-bioc-biocparallel (1.36.0-1) ... 163s Selecting previously unselected package r-cran-bookdown. 163s Preparing to unpack .../248-r-cran-bookdown_0.37+dfsg-1_all.deb ... 163s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 163s Selecting previously unselected package tex-common. 163s Preparing to unpack .../249-tex-common_6.18_all.deb ... 163s Unpacking tex-common (6.18) ... 163s Selecting previously unselected package t1utils. 163s Preparing to unpack .../250-t1utils_1.41-4build2_s390x.deb ... 163s Unpacking t1utils (1.41-4build2) ... 163s Selecting previously unselected package texlive-binaries. 163s Preparing to unpack .../251-texlive-binaries_2023.20230311.66589-9_s390x.deb ... 163s Unpacking texlive-binaries (2023.20230311.66589-9) ... 163s Selecting previously unselected package texlive-base. 163s Preparing to unpack .../252-texlive-base_2023.20240207-1_all.deb ... 163s Unpacking texlive-base (2023.20240207-1) ... 165s Selecting previously unselected package texlive-latex-base. 165s Preparing to unpack .../253-texlive-latex-base_2023.20240207-1_all.deb ... 165s Unpacking texlive-latex-base (2023.20240207-1) ... 165s Selecting previously unselected package texlive-bibtex-extra. 165s Preparing to unpack .../254-texlive-bibtex-extra_2023.20240207-1_all.deb ... 165s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 168s Selecting previously unselected package r-bioc-biocstyle. 168s Preparing to unpack .../255-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 168s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 168s Selecting previously unselected package r-cran-xml. 168s Preparing to unpack .../256-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 168s Unpacking r-cran-xml (3.99-0.16.1-1) ... 168s Selecting previously unselected package r-cran-hms. 168s Preparing to unpack .../257-r-cran-hms_1.1.3-1_all.deb ... 168s Unpacking r-cran-hms (1.1.3-1) ... 168s Selecting previously unselected package r-cran-prettyunits. 168s Preparing to unpack .../258-r-cran-prettyunits_1.2.0-1_all.deb ... 168s Unpacking r-cran-prettyunits (1.2.0-1) ... 168s Selecting previously unselected package r-cran-progress. 168s Preparing to unpack .../259-r-cran-progress_1.2.3-1_all.deb ... 168s Unpacking r-cran-progress (1.2.3-1) ... 168s Selecting previously unselected package r-cran-xml2. 168s Preparing to unpack .../260-r-cran-xml2_1.3.6-1_s390x.deb ... 168s Unpacking r-cran-xml2 (1.3.6-1) ... 168s Selecting previously unselected package r-bioc-biomart. 168s Preparing to unpack .../261-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 168s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 168s Selecting previously unselected package r-bioc-genomicranges. 168s Preparing to unpack .../262-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 168s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 168s Selecting previously unselected package r-bioc-rhtslib. 168s Preparing to unpack .../263-r-bioc-rhtslib_2.4.1+dfsg-1_s390x.deb ... 168s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 168s Selecting previously unselected package r-bioc-rsamtools. 168s Preparing to unpack .../264-r-bioc-rsamtools_2.18.0+dfsg-1_s390x.deb ... 168s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 168s Selecting previously unselected package r-cran-matrixstats. 168s Preparing to unpack .../265-r-cran-matrixstats_1.2.0-1_s390x.deb ... 168s Unpacking r-cran-matrixstats (1.2.0-1) ... 168s Selecting previously unselected package r-bioc-matrixgenerics. 168s Preparing to unpack .../266-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 168s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 168s Selecting previously unselected package r-cran-lattice. 168s Preparing to unpack .../267-r-cran-lattice_0.22-5-1_s390x.deb ... 168s Unpacking r-cran-lattice (0.22-5-1) ... 168s Selecting previously unselected package r-cran-matrix. 168s Preparing to unpack .../268-r-cran-matrix_1.6-5-1_s390x.deb ... 168s Unpacking r-cran-matrix (1.6-5-1) ... 168s Selecting previously unselected package r-cran-abind. 168s Preparing to unpack .../269-r-cran-abind_1.4-5-2_all.deb ... 168s Unpacking r-cran-abind (1.4-5-2) ... 168s Selecting previously unselected package r-bioc-s4arrays. 168s Preparing to unpack .../270-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 168s 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previously unselected package r-bioc-snpstats. 169s Preparing to unpack .../281-r-bioc-snpstats_1.52.0+dfsg-1_s390x.deb ... 169s Unpacking r-bioc-snpstats (1.52.0+dfsg-1) ... 169s Selecting previously unselected package r-bioc-variantannotation. 169s Preparing to unpack .../282-r-bioc-variantannotation_1.48.1-1build1_s390x.deb ... 169s Unpacking r-bioc-variantannotation (1.48.1-1build1) ... 169s Selecting previously unselected package r-cran-colorspace. 169s Preparing to unpack .../283-r-cran-colorspace_2.1-0+dfsg-1_s390x.deb ... 169s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 169s Selecting previously unselected package r-cran-farver. 169s Preparing to unpack .../284-r-cran-farver_2.1.1-1_s390x.deb ... 169s Unpacking r-cran-farver (2.1.1-1) ... 169s Selecting previously unselected package r-cran-gtable. 169s Preparing to unpack .../285-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 169s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 169s Selecting previously unselected package r-cran-isoband. 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174s Setting up r-cran-xtable (1:1.8-4-2) ... 174s Setting up r-cran-cli (3.6.2-1) ... 174s Setting up gfortran (4:13.2.0-7ubuntu1) ... 174s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 174s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 174s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 174s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 174s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 174s Setting up r-cran-bitops (1.0-7-1) ... 174s Setting up r-bioc-biocversion (3.18.1-1) ... 174s Setting up r-cran-bit64 (4.0.5-1) ... 174s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 174s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 174s Setting up r-cran-askpass 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... 174s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 174s Setting up r-cran-fontawesome (0.5.2-1) ... 174s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 174s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 174s Setting up r-cran-tidyr (1.3.1-1) ... 174s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 174s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 174s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 174s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 174s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 174s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 174s Setting up r-bioc-annotationdbi (1.64.1-1) ... 174s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 174s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 174s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 174s Setting up r-bioc-genomicalignments (1.38.2-1) ... 174s Setting up r-cran-bookdown (0.37+dfsg-1) ... 174s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 174s Setting up r-bioc-rtracklayer (1.62.0-1) ... 174s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 174s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 174s Setting up r-bioc-bsgenome (1.70.2-1) ... 174s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 174s Setting up r-cran-dt (0.31+dfsg-1) ... 174s Setting up r-bioc-variantannotation (1.48.1-1build1) ... 174s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 174s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 174s Setting up autopkgtest-satdep (0) ... 174s Processing triggers for man-db (2.12.0-3) ... 175s Processing triggers for install-info (7.1-3) ... 175s Processing triggers for libc-bin (2.39-0ubuntu2) ... 175s Processing triggers for tex-common (6.18) ... 175s Running updmap-sys. This may take some time... done. 175s Running mktexlsr /var/lib/texmf ... done. 175s Building format(s) --all. 220s This may take some time... done. 227s (Reading database ... 103761 files and directories currently installed.) 227s Removing autopkgtest-satdep (0) ... 228s autopkgtest [19:06:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 228s autopkgtest [19:06:25]: test pkg-r-autopkgtest: [----------------------- 228s Test: Try to load the R library VariantAnnotation 228s 228s R version 4.3.2 (2023-10-31) -- "Eye Holes" 228s Copyright (C) 2023 The R Foundation for Statistical Computing 228s Platform: s390x-ibm-linux-gnu (64-bit) 228s 228s R is free software and comes with ABSOLUTELY NO WARRANTY. 228s You are welcome to redistribute it under certain conditions. 228s Type 'license()' or 'licence()' for distribution details. 228s 228s R is a collaborative project with many contributors. 228s Type 'contributors()' for more information and 228s 'citation()' on how to cite R or R packages in publications. 228s 228s Type 'demo()' for some demos, 'help()' for on-line help, or 228s 'help.start()' for an HTML browser interface to help. 228s Type 'q()' to quit R. 228s 228s Loading required package: BiocGenerics 228s > library('VariantAnnotation') 228s 228s Attaching package: ‘BiocGenerics’ 228s 228s The following objects are masked from ‘package:stats’: 228s 228s IQR, mad, sd, var, xtabs 228s 228s The following objects are masked from ‘package:base’: 228s 228s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 228s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 228s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 228s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 228s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 228s table, tapply, union, unique, unsplit, which.max, which.min 228s 228s Loading required package: MatrixGenerics 228s Loading required package: matrixStats 228s 228s Attaching package: ‘MatrixGenerics’ 228s 228s The following objects are masked from ‘package:matrixStats’: 228s 228s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 228s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 228s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 228s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 228s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 228s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 228s colWeightedMeans, colWeightedMedians, colWeightedSds, 228s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 228s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 228s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 228s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 228s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 228s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 228s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 228s rowWeightedSds, rowWeightedVars 228s 228s Loading required package: GenomeInfoDb 228s Loading required package: S4Vectors 228s Loading required package: stats4 229s 229s Attaching package: ‘S4Vectors’ 229s 229s The following object is masked from ‘package:utils’: 229s 229s findMatches 229s 229s The following objects are masked from ‘package:base’: 229s 229s expand.grid, I, unname 229s 229s Loading required package: IRanges 230s Loading required package: GenomicRanges 230s Loading required package: SummarizedExperiment 230s Loading required package: Biobase 231s Welcome to Bioconductor 231s 231s Vignettes contain introductory material; view with 231s 'browseVignettes()'. To cite Bioconductor, see 231s 'citation("Biobase")', and for packages 'citation("pkgname")'. 231s 231s 231s Attaching package: ‘Biobase’ 231s 231s The following object is masked from ‘package:MatrixGenerics’: 231s 231s rowMedians 231s 231s The following objects are masked from ‘package:matrixStats’: 231s 231s anyMissing, rowMedians 231s 234s Loading required package: Rsamtools 234s Loading required package: Biostrings 234s Loading required package: XVector 234s 234s Attaching package: ‘Biostrings’ 234s 234s The following object is masked from ‘package:base’: 234s 234s strsplit 234s 240s > 240s > 240s 240s Attaching package: ‘VariantAnnotation’ 240s 240s The following object is masked from ‘package:base’: 240s 240s tabulate 240s 240s Warning message: 240s package ‘VariantAnnotation’ was built under R version 4.3.3 240s Other tests are currently unsupported! 240s They will be progressively added. 241s autopkgtest [19:06:38]: test pkg-r-autopkgtest: -----------------------] 241s autopkgtest [19:06:38]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 241s pkg-r-autopkgtest PASS 242s autopkgtest [19:06:39]: @@@@@@@@@@@@@@@@@@@@ summary 242s pkg-r-autopkgtest PASS 252s Creating nova instance adt-noble-s390x-r-bioc-variantannotation-20240316-190237-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...