0s autopkgtest [18:54:53]: starting date and time: 2024-03-16 18:54:53+0000 0s autopkgtest [18:54:53]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:54:53]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.nn_xvcf5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-variantannotation --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-22.secgroup --name adt-noble-s390x-r-bioc-variantannotation-20240316-185453-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 145s autopkgtest [18:57:18]: testbed dpkg architecture: s390x 145s autopkgtest [18:57:18]: testbed apt version: 2.7.12 145s autopkgtest [18:57:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 146s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 146s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 146s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 147s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 147s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 147s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB] 147s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 147s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 147s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 147s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3752 kB] 147s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 147s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB] 147s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 149s Fetched 8760 kB in 2s (4008 kB/s) 149s Reading package lists... 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 152s Calculating upgrade... 152s The following packages will be REMOVED: 152s libssl3 152s The following NEW packages will be installed: 152s libssl3t64 152s The following packages have been kept back: 152s curl 152s The following packages will be upgraded: 152s openssl ubuntu-minimal ubuntu-standard 152s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 152s Need to get 2680 kB of archives. 152s After this operation, 23.6 kB of additional disk space will be used. 152s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 153s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 153s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB] 153s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB] 153s Fetched 2680 kB in 1s (3918 kB/s) 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 153s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 153s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 153s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 153s wget depends on libssl3 (>= 3.0.0). 153s tnftp depends on libssl3 (>= 3.0.0). 153s tcpdump depends on libssl3 (>= 3.0.0). 153s systemd-resolved depends on libssl3 (>= 3.0.0). 153s systemd depends on libssl3 (>= 3.0.0). 153s sudo depends on libssl3 (>= 3.0.0). 153s s390-tools depends on libssl3 (>= 3.0.0). 153s rsync depends on libssl3 (>= 3.0.0). 153s python3-cryptography depends on libssl3 (>= 3.0.0). 153s openssh-server depends on libssl3 (>= 3.0.10). 153s openssh-client depends on libssl3 (>= 3.0.10). 153s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 153s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 153s libssh-4:s390x depends on libssl3 (>= 3.0.0). 153s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 153s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 153s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 153s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 153s libnvme1 depends on libssl3 (>= 3.0.0). 153s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 153s libkmod2:s390x depends on libssl3 (>= 3.0.0). 153s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 153s libcurl4:s390x depends on libssl3 (>= 3.0.0). 153s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 153s kmod depends on libssl3 (>= 3.0.0). 153s dhcpcd-base depends on libssl3 (>= 3.0.0). 153s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 153s 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 153s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 153s Selecting previously unselected package libssl3t64:s390x. 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 153s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 153s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 153s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ... 153s Unpacking ubuntu-minimal (1.536) over (1.535) ... 153s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ... 153s Unpacking ubuntu-standard (1.536) over (1.535) ... 153s Setting up ubuntu-minimal (1.536) ... 153s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 153s Setting up ubuntu-standard (1.536) ... 153s Setting up openssl (3.0.13-0ubuntu1) ... 153s Processing triggers for man-db (2.12.0-3) ... 154s Processing triggers for libc-bin (2.39-0ubuntu2) ... 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 155s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 155s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 155s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 155s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 155s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 156s Reading package lists... 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 157s Calculating upgrade... 157s The following packages have been kept back: 157s curl 157s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 157s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 160s autopkgtest [18:57:33]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 160s autopkgtest [18:57:33]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-variantannotation 162s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (dsc) [2587 B] 162s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (tar) [1887 kB] 162s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (diff) [7900 B] 162s gpgv: Signature made Fri Dec 1 09:59:29 2023 UTC 162s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 162s gpgv: issuer "tillea@rki.de" 162s gpgv: Can't check signature: No public key 162s dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.48.1-1.dsc: no acceptable signature found 162s autopkgtest [18:57:35]: testing package r-bioc-variantannotation version 1.48.1-1 162s autopkgtest [18:57:35]: build not needed 163s autopkgtest [18:57:36]: test pkg-r-autopkgtest: preparing testbed 164s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Starting pkgProblemResolver with broken count: 0 165s Starting 2 pkgProblemResolver with broken count: 0 165s Done 165s The following additional packages will be installed: 165s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl 165s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 165s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 165s g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 165s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 165s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 165s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 165s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 165s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 165s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 165s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl 165s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 165s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 165s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 165s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 165s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 165s libjs-popper.js libjs-prettify libjs-sifter.js 165s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 165s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 165s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 165s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 165s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 165s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 165s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 165s libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 165s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 165s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 165s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 165s r-base-dev r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 165s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 165s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 165s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 165s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 165s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 165s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 165s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 165s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 165s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 165s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 165s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 165s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 165s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 165s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 165s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 165s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 165s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 165s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 165s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 165s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 165s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 165s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 165s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 165s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 165s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 165s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 165s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 165s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 165s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 165s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 165s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 165s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 165s x11-common xdg-utils zip zlib1g-dev 165s Suggested packages: 165s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 165s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 165s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 165s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 165s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 165s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 165s libboost-context1.83-dev libboost-contract1.83-dev 165s libboost-coroutine1.83-dev libboost-date-time1.83-dev 165s libboost-exception1.83-dev libboost-fiber1.83-dev 165s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 165s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 165s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 165s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 165s libboost-numpy1.83-dev libboost-program-options1.83-dev 165s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 165s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 165s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 165s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 165s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 165s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 165s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 165s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 165s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 165s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 165s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 165s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 165s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-ensembldb 165s r-bioc-experimenthub r-bioc-all r-cran-testthat r-bioc-affy r-bioc-deseq2 165s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 165s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 165s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 165s r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 165s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-dexseq 165s r-bioc-sparsematrixstats r-bioc-limma r-cran-hexbin r-bioc-rhdf5 165s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-kernsmooth r-cran-kernlab 165s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis 165s r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-magick r-cran-sf 165s r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins 165s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 165s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 165s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 165s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 165s texlive-latex-base-doc wp2latex 165s Recommended packages: 165s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 165s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-downlit 165s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 165s r-cran-webshot r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery 165s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 165s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 165s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-future 165s w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-hexbin 165s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 165s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 165s r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown r-cran-jpeg 165s r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate 165s r-cran-rgl r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 165s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-usethis 165s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 165s r-cran-dichromat r-cran-data.table r-cran-mockr r-cran-formattable 165s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 165s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 165s x11-xserver-utils 165s The following packages will be REMOVED: 165s libcurl4 libpsl5 165s The following NEW packages will be installed: 165s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 165s cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config 165s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 165s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 165s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 165s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 165s gfortran-s390x-linux-gnu icu-devtools javascript-common libasan8 libatomic1 165s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 165s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 165s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev 165s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 165s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 165s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 165s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 165s libjs-jquery-datatables libjs-jquery-datatables-extensions 165s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 165s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 165s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 165s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 165s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 165s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 165s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 165s libpng-dev libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 165s libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 165s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 165s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 165s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 165s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 165s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 165s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 165s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 165s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 165s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 165s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 165s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 165s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 165s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 165s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 165s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 165s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 165s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 165s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 165s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 165s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 165s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 165s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 165s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 165s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 165s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 165s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 165s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 165s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 165s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 165s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 165s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 165s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 165s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 165s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 165s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 165s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 165s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 165s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 165s x11-common xdg-utils zip zlib1g-dev 165s The following packages will be upgraded: 165s curl 165s 1 upgraded, 299 newly installed, 2 to remove and 0 not upgraded. 165s Need to get 469 MB/469 MB of archives. 165s After this operation, 1450 MB of additional disk space will be used. 165s Get:1 /tmp/autopkgtest.QrIbLM/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [780 B] 165s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB] 166s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB] 166s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB] 166s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 166s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 166s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 166s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 166s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 166s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 166s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 166s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 167s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 167s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 167s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 167s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 167s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 167s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 167s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 167s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 167s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 167s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 168s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 168s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 168s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 168s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 168s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 168s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 168s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 169s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 169s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 169s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 169s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 169s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 169s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 169s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 169s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 169s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 169s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 169s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 169s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 169s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 169s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 169s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 169s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 169s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 169s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 169s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 169s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 169s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 169s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 169s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 169s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 169s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 169s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 169s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 169s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 169s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 169s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 170s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 170s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 170s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 170s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 170s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 170s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 170s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 170s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 170s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 170s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 170s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 170s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 170s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 170s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 170s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 170s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 170s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 170s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 170s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 170s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 170s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 170s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 170s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 170s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 170s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 170s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 170s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 170s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 170s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 170s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 170s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 170s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 171s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 171s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 171s Get:94 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 171s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9 [66.4 kB] 171s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 171s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 171s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 171s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 171s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 171s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 171s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 171s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 171s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 171s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 171s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 171s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 171s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 171s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 171s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 171s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 171s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 172s Get:113 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 172s Get:114 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 172s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9 [41.6 kB] 172s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 172s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 172s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 172s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9 [65.0 kB] 172s Get:120 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 172s Get:121 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 172s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9 [132 kB] 172s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 172s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 172s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 172s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 172s Get:127 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 172s Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 172s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 172s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3 [49.3 kB] 172s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 172s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1 [186 kB] 172s Get:133 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 172s Get:134 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13 s390x 0.13.72+dfsg.1-1.1 [26.1 kB] 172s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 172s Get:136 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 172s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 172s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 172s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 174s Get:140 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 174s Get:141 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 174s Get:142 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 174s Get:143 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 174s Get:144 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 174s Get:145 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 174s Get:146 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 175s Get:147 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 175s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 175s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 175s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 175s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 175s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 175s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 176s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 176s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 176s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 176s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 176s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 176s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 176s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 176s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 176s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 176s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 176s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 176s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 176s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 176s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 176s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 176s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 176s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB] 176s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 176s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 176s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 176s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 176s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB] 176s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 176s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 176s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB] 176s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 176s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 176s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 176s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1 [794 kB] 176s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 177s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 177s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 177s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 177s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 177s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 178s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 178s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 178s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 178s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 178s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 178s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 178s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 178s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 178s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 178s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 178s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 178s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 178s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 178s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 178s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 178s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 178s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 178s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocversion all 3.18.1-1 [11.0 kB] 178s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 178s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 178s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 178s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 178s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 179s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 179s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 179s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1 [519 kB] 179s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 179s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 179s Get:217 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 179s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 179s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 179s Get:220 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 180s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 180s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 180s Get:223 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 180s Get:224 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 180s Get:225 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 180s Get:226 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 180s Get:227 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 180s Get:228 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 181s Get:229 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 181s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 181s Get:231 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 181s Get:232 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 181s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 181s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 181s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 181s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 182s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 182s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lazyeval s390x 0.2.2-1build1 [143 kB] 182s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 182s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dt all 0.31+dfsg-1 [265 kB] 182s Get:241 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 182s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 182s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 182s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 182s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 182s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 182s Get:247 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 182s Get:248 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 182s Get:249 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 182s Get:250 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 182s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 182s Get:252 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 182s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 182s Get:254 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 182s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9 [9353 kB] 182s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 183s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 183s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 187s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 187s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 187s Get:261 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 187s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 187s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 187s Get:264 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 187s Get:265 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 187s Get:266 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 187s Get:267 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-1 [1410 kB] 187s Get:268 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1build1 [3700 kB] 187s Get:269 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 187s Get:270 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 187s Get:271 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 187s Get:272 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 187s Get:273 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 187s Get:274 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 187s Get:275 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 188s Get:276 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 188s Get:277 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 188s Get:278 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 188s Get:279 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 188s Get:280 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 188s Get:281 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 188s Get:282 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-bsgenome all 1.70.2-1 [6975 kB] 188s Get:283 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 188s Get:284 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-survival s390x 3.5-8-1 [6161 kB] 189s Get:285 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-snpstats s390x 1.52.0+dfsg-1 [7253 kB] 189s Get:286 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-variantannotation s390x 1.48.1-1 [3572 kB] 189s Get:287 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-colorspace s390x 2.1-0+dfsg-1 [1540 kB] 189s Get:288 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-farver s390x 2.1.1-1 [1347 kB] 189s Get:289 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 189s Get:290 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB] 189s Get:291 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 189s Get:292 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-nlme s390x 3.1.164-1 [2268 kB] 189s Get:293 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 190s Get:294 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB] 190s Get:295 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-munsell all 0.5.0-2build1 [208 kB] 190s Get:296 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 190s Get:297 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB] 190s Get:298 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-scales all 1.3.0-1 [603 kB] 190s Get:299 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 190s Get:300 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-runit all 0.4.32-3 [283 kB] 191s Preconfiguring packages ... 191s Fetched 469 MB in 25s (19.1 MB/s) 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 191s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ... 191s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 191s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested: 191s wget depends on libpsl5 (>= 0.16.0). 191s libcurl4:s390x depends on libpsl5 (>= 0.16.0). 191s libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0). 191s 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 191s Removing libpsl5:s390x (0.21.2-1build1) ... 191s Selecting previously unselected package libpsl5t64:s390x. 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52168 files and directories currently installed.) 191s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ... 191s Unpacking libpsl5t64:s390x (0.21.2-1.1) ... 191s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested: 191s s390-tools depends on libcurl4 (>= 7.16.2). 191s 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52174 files and directories currently installed.) 191s Removing libcurl4:s390x (8.5.0-2ubuntu2) ... 191s Selecting previously unselected package libcurl4t64:s390x. 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52169 files and directories currently installed.) 191s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ... 191s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ... 191s Selecting previously unselected package libc-dev-bin. 191s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 191s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 191s Selecting previously unselected package linux-libc-dev:s390x. 191s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ... 191s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 191s Selecting previously unselected package libcrypt-dev:s390x. 191s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 191s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 191s Selecting previously unselected package libtirpc-dev:s390x. 191s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 191s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 191s Selecting previously unselected package libnsl-dev:s390x. 191s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ... 191s Unpacking libnsl-dev:s390x (1.3.0-3) ... 191s Selecting previously unselected package rpcsvc-proto. 191s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 191s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 191s Selecting previously unselected package libc6-dev:s390x. 191s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ... 191s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 191s Selecting previously unselected package libisl23:s390x. 191s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ... 191s Unpacking libisl23:s390x (0.26-3) ... 191s Selecting previously unselected package libmpc3:s390x. 191s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ... 191s Unpacking libmpc3:s390x (1.3.1-1) ... 191s Selecting previously unselected package cpp-13-s390x-linux-gnu. 191s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 191s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 192s Selecting previously unselected package cpp-13. 192s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 192s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 192s Selecting previously unselected package cpp-s390x-linux-gnu. 192s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 192s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 192s Selecting previously unselected package cpp. 192s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 192s Unpacking cpp (4:13.2.0-7ubuntu1) ... 192s Selecting previously unselected package libcc1-0:s390x. 192s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 192s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libgomp1:s390x. 192s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 192s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libitm1:s390x. 192s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ... 192s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libatomic1:s390x. 192s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 192s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libasan8:s390x. 192s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ... 192s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libubsan1:s390x. 192s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 192s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libgcc-13-dev:s390x. 192s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 192s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 192s Selecting previously unselected package gcc-13-s390x-linux-gnu. 192s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 192s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 192s Selecting previously unselected package gcc-13. 192s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 192s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 192s Selecting previously unselected package gcc-s390x-linux-gnu. 192s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 192s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 192s Selecting previously unselected package gcc. 192s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 192s Unpacking gcc (4:13.2.0-7ubuntu1) ... 192s Selecting previously unselected package libstdc++-13-dev:s390x. 192s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 192s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 192s Selecting previously unselected package g++-13-s390x-linux-gnu. 192s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 192s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 193s Selecting previously unselected package g++-13. 193s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ... 193s Unpacking g++-13 (13.2.0-17ubuntu2) ... 193s Selecting previously unselected package g++-s390x-linux-gnu. 193s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 193s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 193s Selecting previously unselected package g++. 193s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 193s Unpacking g++ (4:13.2.0-7ubuntu1) ... 193s Selecting previously unselected package build-essential. 193s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ... 193s Unpacking build-essential (12.10ubuntu1) ... 193s Selecting previously unselected package dctrl-tools. 193s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ... 193s Unpacking dctrl-tools (2.24-3build2) ... 193s Selecting previously unselected package libfreetype6:s390x. 193s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 193s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 193s Selecting previously unselected package fonts-dejavu-mono. 193s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 193s Unpacking fonts-dejavu-mono (2.37-8) ... 193s Selecting previously unselected package fonts-dejavu-core. 193s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 193s Unpacking fonts-dejavu-core (2.37-8) ... 193s Selecting previously unselected package fontconfig-config. 193s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 193s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 193s Selecting previously unselected package libfontconfig1:s390x. 193s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 193s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 193s Selecting previously unselected package fontconfig. 193s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 193s Unpacking fontconfig (2.15.0-1ubuntu1) ... 193s Selecting previously unselected package fonts-font-awesome. 193s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 193s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 193s Selecting previously unselected package fonts-glyphicons-halflings. 193s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 193s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 193s Selecting previously unselected package fonts-lmodern. 193s Preparing to unpack .../040-fonts-lmodern_2.005-1_all.deb ... 193s Unpacking fonts-lmodern (2.005-1) ... 193s Selecting previously unselected package fonts-mathjax. 193s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 193s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 193s Selecting previously unselected package libgfortran5:s390x. 193s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 193s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libgfortran-13-dev:s390x. 193s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 193s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 193s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 193s Preparing to unpack .../044-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 193s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package gfortran-13. 194s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 194s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package gfortran-s390x-linux-gnu. 194s Preparing to unpack .../046-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 194s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 194s Selecting previously unselected package gfortran. 194s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 194s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 194s Selecting previously unselected package icu-devtools. 194s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_s390x.deb ... 194s Unpacking icu-devtools (74.2-1ubuntu1) ... 194s Selecting previously unselected package javascript-common. 194s Preparing to unpack .../049-javascript-common_11+nmu1_all.deb ... 194s Unpacking javascript-common (11+nmu1) ... 194s Selecting previously unselected package libio-string-perl. 194s Preparing to unpack .../050-libio-string-perl_1.08-4_all.deb ... 194s Unpacking libio-string-perl (1.08-4) ... 194s Selecting previously unselected package liblatex-tounicode-perl. 194s Preparing to unpack .../051-liblatex-tounicode-perl_0.54-2_all.deb ... 194s Unpacking liblatex-tounicode-perl (0.54-2) ... 194s Selecting previously unselected package libbibtex-parser-perl. 194s Preparing to unpack .../052-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 194s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 194s Selecting previously unselected package libblas3:s390x. 194s Preparing to unpack .../053-libblas3_3.12.0-3_s390x.deb ... 194s Unpacking libblas3:s390x (3.12.0-3) ... 194s Selecting previously unselected package libblas-dev:s390x. 194s Preparing to unpack .../054-libblas-dev_3.12.0-3_s390x.deb ... 194s Unpacking libblas-dev:s390x (3.12.0-3) ... 194s Selecting previously unselected package libboost1.83-dev:s390x. 194s Preparing to unpack .../055-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 194s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 196s Selecting previously unselected package libboost-dev:s390x. 196s Preparing to unpack .../056-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 196s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 196s Selecting previously unselected package libbz2-dev:s390x. 196s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 196s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 196s Selecting previously unselected package libpixman-1-0:s390x. 196s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_s390x.deb ... 196s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 196s Selecting previously unselected package libxcb-render0:s390x. 196s Preparing to unpack .../059-libxcb-render0_1.15-1_s390x.deb ... 196s Unpacking libxcb-render0:s390x (1.15-1) ... 196s Selecting previously unselected package libxcb-shm0:s390x. 196s Preparing to unpack .../060-libxcb-shm0_1.15-1_s390x.deb ... 196s Unpacking libxcb-shm0:s390x (1.15-1) ... 196s Selecting previously unselected package libxrender1:s390x. 196s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 196s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 196s Selecting previously unselected package libcairo2:s390x. 196s Preparing to unpack .../062-libcairo2_1.18.0-1_s390x.deb ... 196s Unpacking libcairo2:s390x (1.18.0-1) ... 196s Selecting previously unselected package libdatrie1:s390x. 196s Preparing to unpack .../063-libdatrie1_0.2.13-3_s390x.deb ... 196s Unpacking libdatrie1:s390x (0.2.13-3) ... 196s Selecting previously unselected package libdeflate0:s390x. 196s Preparing to unpack .../064-libdeflate0_1.19-1_s390x.deb ... 196s Unpacking libdeflate0:s390x (1.19-1) ... 196s Selecting previously unselected package libgraphite2-3:s390x. 196s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_s390x.deb ... 196s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 196s Selecting previously unselected package libharfbuzz0b:s390x. 196s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_s390x.deb ... 196s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 196s Selecting previously unselected package x11-common. 196s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 196s Unpacking x11-common (1:7.7+23ubuntu2) ... 196s Selecting previously unselected package libice6:s390x. 196s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_s390x.deb ... 196s Unpacking libice6:s390x (2:1.0.10-1build2) ... 196s Selecting previously unselected package libicu-dev:s390x. 196s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_s390x.deb ... 196s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 196s Selecting previously unselected package libjpeg-turbo8:s390x. 196s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 196s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 196s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 196s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 196s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 196s Selecting previously unselected package libjpeg8:s390x. 196s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_s390x.deb ... 196s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 196s Selecting previously unselected package libjpeg8-dev:s390x. 196s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 196s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 196s Selecting previously unselected package libjpeg-dev:s390x. 196s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 196s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 196s Selecting previously unselected package libjs-bootstrap. 196s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 196s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 196s Selecting previously unselected package libjs-popper.js. 196s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6_all.deb ... 196s Unpacking libjs-popper.js (1.16.1+ds-6) ... 196s Selecting previously unselected package libjs-bootstrap4. 196s Preparing to unpack .../077-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 196s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 196s Selecting previously unselected package libjs-d3. 196s Preparing to unpack .../078-libjs-d3_3.5.17-4_all.deb ... 196s Unpacking libjs-d3 (3.5.17-4) ... 196s Selecting previously unselected package libjs-es5-shim. 196s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ... 196s Unpacking libjs-es5-shim (4.6.7-2) ... 196s Selecting previously unselected package libjs-highlight.js. 196s Preparing to unpack .../080-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 196s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 196s Selecting previously unselected package libjs-jquery. 196s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 196s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 197s Selecting previously unselected package libjs-jquery-datatables. 197s Preparing to unpack .../082-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 197s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 197s Selecting previously unselected package libjs-jquery-datatables-extensions. 197s Preparing to unpack .../083-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 197s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 197s Selecting previously unselected package libjs-sifter.js. 197s Preparing to unpack .../084-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 197s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 197s Selecting previously unselected package libjs-microplugin.js. 197s 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197s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ... 197s Selecting previously unselected package libpcre2-dev:s390x. 197s Preparing to unpack .../106-libpcre2-dev_10.42-4ubuntu1_s390x.deb ... 197s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ... 197s Selecting previously unselected package libpkgconf3:s390x. 197s Preparing to unpack .../107-libpkgconf3_1.8.1-2_s390x.deb ... 197s Unpacking libpkgconf3:s390x (1.8.1-2) ... 197s Selecting previously unselected package zlib1g-dev:s390x. 197s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 197s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 197s Selecting previously unselected package libpng-dev:s390x. 197s Preparing to unpack .../109-libpng-dev_1.6.43-1_s390x.deb ... 197s Unpacking libpng-dev:s390x (1.6.43-1) ... 197s Selecting previously unselected package libpotrace0:s390x. 197s Preparing to unpack .../110-libpotrace0_1.16-2_s390x.deb ... 197s Unpacking libpotrace0:s390x (1.16-2) ... 197s Selecting previously unselected package libptexenc1:s390x. 197s Preparing to unpack .../111-libptexenc1_2023.20230311.66589-9_s390x.deb ... 197s Unpacking libptexenc1:s390x (2023.20230311.66589-9) ... 197s Selecting previously unselected package libreadline-dev:s390x. 197s Preparing to unpack .../112-libreadline-dev_8.2-3_s390x.deb ... 197s Unpacking libreadline-dev:s390x (8.2-3) ... 197s Selecting previously unselected package libsharpyuv0:s390x. 197s Preparing to unpack .../113-libsharpyuv0_1.3.2-0.4_s390x.deb ... 197s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 197s Selecting previously unselected package libsm6:s390x. 197s Preparing to unpack .../114-libsm6_2%3a1.2.3-1build2_s390x.deb ... 197s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 197s Selecting previously unselected package libsynctex2:s390x. 197s Preparing to unpack .../115-libsynctex2_2023.20230311.66589-9_s390x.deb ... 197s Unpacking libsynctex2:s390x (2023.20230311.66589-9) ... 197s Selecting previously unselected package libtcl8.6:s390x. 197s Preparing to unpack .../116-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 197s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 198s Selecting previously unselected package libteckit0:s390x. 198s Preparing to unpack .../117-libteckit0_2.5.12+ds1-1_s390x.deb ... 198s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 198s Selecting previously unselected package libtexlua53-5:s390x. 198s Preparing to unpack .../118-libtexlua53-5_2023.20230311.66589-9_s390x.deb ... 198s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9) ... 198s Selecting previously unselected package libjbig0:s390x. 198s Preparing to unpack .../119-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 198s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 198s Selecting previously unselected package libwebp7:s390x. 198s Preparing to unpack .../120-libwebp7_1.3.2-0.4_s390x.deb ... 198s Unpacking libwebp7:s390x (1.3.2-0.4) ... 198s Selecting previously unselected package libtiff6:s390x. 198s Preparing to unpack .../121-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 198s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 198s Selecting previously unselected package libxft2:s390x. 198s Preparing to unpack .../122-libxft2_2.3.6-1_s390x.deb ... 198s Unpacking libxft2:s390x (2.3.6-1) ... 198s Selecting previously unselected package libxss1:s390x. 198s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build2_s390x.deb ... 198s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 198s Selecting previously unselected package libtk8.6:s390x. 198s Preparing to unpack .../124-libtk8.6_8.6.13-2_s390x.deb ... 198s Unpacking libtk8.6:s390x (8.6.13-2) ... 198s Selecting previously unselected package libxt6:s390x. 198s Preparing to unpack .../125-libxt6_1%3a1.2.1-1.1_s390x.deb ... 198s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 198s Selecting previously unselected package libxmu6:s390x. 198s Preparing to unpack .../126-libxmu6_2%3a1.1.3-3_s390x.deb ... 198s Unpacking libxmu6:s390x (2:1.1.3-3) ... 198s Selecting previously unselected package libxpm4:s390x. 198s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1_s390x.deb ... 198s Unpacking libxpm4:s390x (1:3.5.17-1) ... 198s Selecting previously unselected package libxaw7:s390x. 198s Preparing to unpack .../128-libxaw7_2%3a1.0.14-1_s390x.deb ... 198s Unpacking libxaw7:s390x (2:1.0.14-1) ... 198s Selecting previously unselected package libxi6:s390x. 198s Preparing to unpack .../129-libxi6_2%3a1.8.1-1_s390x.deb ... 198s Unpacking libxi6:s390x (2:1.8.1-1) ... 198s Selecting previously unselected package libzzip-0-13:s390x. 198s Preparing to unpack .../130-libzzip-0-13_0.13.72+dfsg.1-1.1_s390x.deb ... 198s Unpacking libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 198s Selecting previously unselected package node-bootstrap-sass. 198s Preparing to unpack .../131-node-bootstrap-sass_3.4.3-2_all.deb ... 198s Unpacking node-bootstrap-sass (3.4.3-2) ... 198s Selecting previously unselected package node-html5shiv. 198s Preparing to unpack .../132-node-html5shiv_3.7.3+dfsg-5_all.deb ... 198s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 198s Selecting previously unselected package node-normalize.css. 198s Preparing to unpack .../133-node-normalize.css_8.0.1-5_all.deb ... 198s Unpacking node-normalize.css (8.0.1-5) ... 198s Selecting previously unselected package pandoc-data. 198s Preparing to unpack .../134-pandoc-data_3.1.3-1_all.deb ... 198s Unpacking pandoc-data (3.1.3-1) ... 198s Selecting previously unselected package pandoc. 198s Preparing to unpack .../135-pandoc_3.1.3+ds-2_s390x.deb ... 198s Unpacking pandoc (3.1.3+ds-2) ... 199s Selecting previously unselected package pkgconf-bin. 199s Preparing to unpack .../136-pkgconf-bin_1.8.1-2_s390x.deb ... 199s Unpacking pkgconf-bin (1.8.1-2) ... 199s Selecting previously unselected package pkgconf:s390x. 199s Preparing to unpack .../137-pkgconf_1.8.1-2_s390x.deb ... 199s Unpacking pkgconf:s390x (1.8.1-2) ... 199s Selecting previously unselected package pkg-config:s390x. 199s Preparing to unpack .../138-pkg-config_1.8.1-2_s390x.deb ... 199s Unpacking pkg-config:s390x (1.8.1-2) ... 199s Selecting previously unselected package zip. 199s Preparing to unpack .../139-zip_3.0-13_s390x.deb ... 199s Unpacking zip (3.0-13) ... 199s Selecting previously unselected package unzip. 199s Preparing to unpack .../140-unzip_6.0-28ubuntu3_s390x.deb ... 199s Unpacking unzip (6.0-28ubuntu3) ... 199s Selecting previously unselected package xdg-utils. 199s Preparing to unpack .../141-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 199s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 199s Selecting previously unselected package r-base-core. 199s Preparing to unpack .../142-r-base-core_4.3.2-1build1_s390x.deb ... 199s Unpacking r-base-core (4.3.2-1build1) ... 200s Selecting previously unselected package liblzma-dev:s390x. 200s Preparing to unpack .../143-liblzma-dev_5.4.5-0.3_s390x.deb ... 200s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 200s Selecting previously unselected package r-base-dev. 200s Preparing to unpack .../144-r-base-dev_4.3.2-1build1_all.deb ... 200s Unpacking r-base-dev (4.3.2-1build1) ... 200s Selecting previously unselected package pkg-r-autopkgtest. 200s Preparing to unpack .../145-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 200s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 200s Selecting previously unselected package r-bioc-biocgenerics. 200s Preparing to unpack .../146-r-bioc-biocgenerics_0.48.1-2_all.deb ... 200s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 200s Selecting previously unselected package r-bioc-biobase. 200s Preparing to unpack .../147-r-bioc-biobase_2.62.0-1_s390x.deb ... 200s Unpacking r-bioc-biobase (2.62.0-1) ... 200s Selecting previously unselected package r-bioc-s4vectors. 200s Preparing to unpack .../148-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 200s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 200s Selecting previously unselected package r-bioc-iranges. 200s Preparing to unpack .../149-r-bioc-iranges_2.36.0-1_s390x.deb ... 200s Unpacking r-bioc-iranges (2.36.0-1) ... 200s Selecting previously unselected package r-cran-dbi. 200s Preparing to unpack .../150-r-cran-dbi_1.2.2-1_all.deb ... 200s Unpacking r-cran-dbi (1.2.2-1) ... 200s Selecting previously unselected package r-cran-bit. 200s Preparing to unpack .../151-r-cran-bit_4.0.5-1_s390x.deb ... 200s Unpacking r-cran-bit (4.0.5-1) ... 200s Selecting previously unselected package r-cran-bit64. 200s Preparing to unpack .../152-r-cran-bit64_4.0.5-1_s390x.deb ... 200s Unpacking r-cran-bit64 (4.0.5-1) ... 200s Selecting previously unselected package r-cran-rlang. 200s Preparing to unpack .../153-r-cran-rlang_1.1.3-1_s390x.deb ... 200s Unpacking r-cran-rlang (1.1.3-1) ... 200s Selecting previously unselected package r-cran-cli. 200s Preparing to unpack .../154-r-cran-cli_3.6.2-1_s390x.deb ... 200s Unpacking r-cran-cli (3.6.2-1) ... 200s Selecting previously unselected package r-cran-glue. 200s Preparing to unpack .../155-r-cran-glue_1.7.0-1_s390x.deb ... 200s Unpacking r-cran-glue (1.7.0-1) ... 200s Selecting previously unselected package r-cran-lifecycle. 200s Preparing to unpack .../156-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 200s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 200s Selecting previously unselected package r-cran-vctrs. 200s Preparing to unpack .../157-r-cran-vctrs_0.6.5-1_s390x.deb ... 200s Unpacking r-cran-vctrs (0.6.5-1) ... 200s Selecting previously unselected package r-cran-blob. 200s Preparing to unpack .../158-r-cran-blob_1.2.4-1_all.deb ... 200s Unpacking r-cran-blob (1.2.4-1) ... 200s Selecting previously unselected package r-cran-fastmap. 200s Preparing to unpack .../159-r-cran-fastmap_1.1.1-1_s390x.deb ... 200s Unpacking r-cran-fastmap (1.1.1-1) ... 200s Selecting previously unselected package r-cran-cachem. 200s Preparing to unpack .../160-r-cran-cachem_1.0.8-1_s390x.deb ... 200s Unpacking r-cran-cachem (1.0.8-1) ... 200s Selecting previously unselected package r-cran-memoise. 200s Preparing to unpack .../161-r-cran-memoise_2.0.1-1_all.deb ... 200s Unpacking r-cran-memoise (2.0.1-1) ... 200s Selecting previously unselected package r-cran-pkgconfig. 200s Preparing to unpack .../162-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 200s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 200s Selecting previously unselected package r-cran-plogr. 200s Preparing to unpack .../163-r-cran-plogr_0.2.0-3build1_all.deb ... 200s Unpacking r-cran-plogr (0.2.0-3build1) ... 200s Selecting previously unselected package r-cran-cpp11. 200s Preparing to unpack .../164-r-cran-cpp11_0.4.7-1_all.deb ... 200s Unpacking r-cran-cpp11 (0.4.7-1) ... 200s Selecting previously unselected package r-cran-rsqlite. 200s Preparing to unpack .../165-r-cran-rsqlite_2.3.4-1_s390x.deb ... 200s Unpacking r-cran-rsqlite (2.3.4-1) ... 200s Selecting previously unselected package r-cran-curl. 200s Preparing to unpack .../166-r-cran-curl_5.2.0+dfsg-1_s390x.deb ... 200s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 200s Selecting previously unselected package r-cran-jsonlite. 200s Preparing to unpack .../167-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 200s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 200s Selecting previously unselected package r-cran-mime. 200s Preparing to unpack .../168-r-cran-mime_0.12-1_s390x.deb ... 200s Unpacking r-cran-mime (0.12-1) ... 200s Selecting previously unselected package r-cran-sys. 200s Preparing to unpack .../169-r-cran-sys_3.4.2-1_s390x.deb ... 200s Unpacking r-cran-sys (3.4.2-1) ... 200s Selecting previously unselected package r-cran-askpass. 201s Preparing to unpack .../170-r-cran-askpass_1.2.0-1_s390x.deb ... 201s Unpacking r-cran-askpass (1.2.0-1) ... 201s Selecting previously unselected package r-cran-openssl. 201s Preparing to unpack .../171-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ... 201s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 201s Selecting previously unselected package r-cran-r6. 201s Preparing to unpack .../172-r-cran-r6_2.5.1-1_all.deb ... 201s Unpacking r-cran-r6 (2.5.1-1) ... 201s Selecting previously unselected package r-cran-httr. 201s Preparing to unpack .../173-r-cran-httr_1.4.7+dfsg-1_all.deb ... 201s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 201s Selecting previously unselected package r-cran-png. 201s Preparing to unpack .../174-r-cran-png_0.1-8-1_s390x.deb ... 201s Unpacking r-cran-png (0.1-8-1) ... 201s Selecting previously unselected package r-bioc-zlibbioc. 201s Preparing to unpack .../175-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 201s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 201s Selecting previously unselected package r-bioc-xvector. 201s Preparing to unpack .../176-r-bioc-xvector_0.42.0-1_s390x.deb ... 201s Unpacking r-bioc-xvector (0.42.0-1) ... 201s Selecting previously unselected package r-cran-bitops. 201s Preparing to unpack .../177-r-cran-bitops_1.0-7-1_s390x.deb ... 201s Unpacking r-cran-bitops (1.0-7-1) ... 201s Selecting previously unselected package r-cran-rcurl. 201s Preparing to unpack .../178-r-cran-rcurl_1.98-1.14+dfsg-1_s390x.deb ... 201s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 201s Selecting previously unselected package r-bioc-genomeinfodbdata. 201s Preparing to unpack .../179-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 201s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 201s Selecting previously unselected package r-bioc-genomeinfodb. 201s Preparing to unpack .../180-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 201s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 201s Selecting previously unselected package r-cran-crayon. 201s Preparing to unpack .../181-r-cran-crayon_1.5.2-1_all.deb ... 201s Unpacking r-cran-crayon (1.5.2-1) ... 201s Selecting previously unselected package r-bioc-biostrings. 201s Preparing to unpack .../182-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 201s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 201s Selecting previously unselected package r-bioc-keggrest. 201s Preparing to unpack .../183-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 201s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 201s Selecting previously unselected package r-bioc-annotationdbi. 201s Preparing to unpack .../184-r-bioc-annotationdbi_1.64.1-1_all.deb ... 201s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 201s Selecting previously unselected package r-cran-generics. 201s Preparing to unpack .../185-r-cran-generics_0.1.3-1_all.deb ... 201s Unpacking r-cran-generics (0.1.3-1) ... 201s Selecting previously unselected package r-cran-magrittr. 201s Preparing to unpack .../186-r-cran-magrittr_2.0.3-1_s390x.deb ... 201s Unpacking r-cran-magrittr (2.0.3-1) ... 201s Selecting previously unselected package r-cran-fansi. 201s Preparing to unpack .../187-r-cran-fansi_1.0.5-1_s390x.deb ... 201s Unpacking r-cran-fansi (1.0.5-1) ... 201s Selecting previously unselected package r-cran-utf8. 201s Preparing to unpack .../188-r-cran-utf8_1.2.4-1_s390x.deb ... 201s Unpacking r-cran-utf8 (1.2.4-1) ... 201s Selecting previously unselected package r-cran-pillar. 201s Preparing to unpack .../189-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 201s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 201s Selecting previously unselected package r-cran-tibble. 201s Preparing to unpack .../190-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 201s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 201s Selecting previously unselected package r-cran-withr. 201s Preparing to unpack .../191-r-cran-withr_2.5.0-1_all.deb ... 201s Unpacking r-cran-withr (2.5.0-1) ... 201s Selecting previously unselected package r-cran-tidyselect. 201s Preparing to unpack .../192-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 201s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 201s Selecting previously unselected package r-cran-dplyr. 201s Preparing to unpack .../193-r-cran-dplyr_1.1.4-1_s390x.deb ... 201s Unpacking r-cran-dplyr (1.1.4-1) ... 201s Selecting previously unselected package r-cran-purrr. 201s Preparing to unpack .../194-r-cran-purrr_1.0.2-1_s390x.deb ... 201s Unpacking r-cran-purrr (1.0.2-1) ... 201s Selecting previously unselected package r-cran-stringi. 201s Preparing to unpack .../195-r-cran-stringi_1.8.3-1_s390x.deb ... 201s Unpacking r-cran-stringi (1.8.3-1) ... 201s Selecting previously unselected package r-cran-stringr. 202s Preparing to unpack .../196-r-cran-stringr_1.5.1-1_all.deb ... 202s Unpacking r-cran-stringr (1.5.1-1) ... 202s Selecting previously unselected package r-cran-tidyr. 202s Preparing to unpack .../197-r-cran-tidyr_1.3.1-1_s390x.deb ... 202s Unpacking r-cran-tidyr (1.3.1-1) ... 202s Selecting previously unselected package r-cran-dbplyr. 202s Preparing to unpack .../198-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 202s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 202s Selecting previously unselected package r-cran-filelock. 202s Preparing to unpack .../199-r-cran-filelock_1.0.3-1_s390x.deb ... 202s Unpacking r-cran-filelock (1.0.3-1) ... 202s Selecting previously unselected package r-bioc-biocfilecache. 202s Preparing to unpack .../200-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 202s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 202s Selecting previously unselected package r-cran-biocmanager. 202s Preparing to unpack .../201-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 202s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 202s Selecting previously unselected package r-bioc-biocversion. 202s Preparing to unpack .../202-r-bioc-biocversion_3.18.1-1_all.deb ... 202s Unpacking r-bioc-biocversion (3.18.1-1) ... 202s Selecting previously unselected package r-cran-rappdirs. 202s Preparing to unpack .../203-r-cran-rappdirs_0.3.3-1_s390x.deb ... 202s Unpacking r-cran-rappdirs (0.3.3-1) ... 202s Selecting previously unselected package r-cran-yaml. 202s Preparing to unpack .../204-r-cran-yaml_2.3.8-1_s390x.deb ... 202s Unpacking r-cran-yaml (2.3.8-1) ... 202s Selecting previously unselected package r-cran-littler. 202s Preparing to unpack .../205-r-cran-littler_0.3.19-1_s390x.deb ... 202s Unpacking r-cran-littler (0.3.19-1) ... 202s Selecting previously unselected package r-cran-pkgkitten. 202s Preparing to unpack .../206-r-cran-pkgkitten_0.2.3-1_all.deb ... 202s Unpacking r-cran-pkgkitten (0.2.3-1) ... 202s Selecting previously unselected package r-cran-rcpp. 202s Preparing to unpack .../207-r-cran-rcpp_1.0.12-1_s390x.deb ... 202s Unpacking r-cran-rcpp (1.0.12-1) ... 202s Selecting previously unselected package r-cran-later. 202s Preparing to unpack .../208-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 202s Unpacking r-cran-later (1.3.2+dfsg-1) ... 202s Selecting previously unselected package r-cran-promises. 202s Preparing to unpack .../209-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 202s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 202s Selecting previously unselected package r-cran-httpuv. 202s Preparing to unpack .../210-r-cran-httpuv_1.6.14+dfsg-1_s390x.deb ... 202s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 202s Selecting previously unselected package r-cran-xtable. 202s Preparing to unpack .../211-r-cran-xtable_1%3a1.8-4-2_all.deb ... 202s Unpacking r-cran-xtable (1:1.8-4-2) ... 202s Selecting previously unselected package r-cran-base64enc. 202s Preparing to unpack .../212-r-cran-base64enc_0.1-3-3_s390x.deb ... 202s Unpacking r-cran-base64enc (0.1-3-3) ... 202s Selecting previously unselected package r-cran-digest. 202s Preparing to unpack .../213-r-cran-digest_0.6.34-1_s390x.deb ... 202s Unpacking r-cran-digest (0.6.34-1) ... 202s Selecting previously unselected package r-cran-ellipsis. 202s Preparing to unpack .../214-r-cran-ellipsis_0.3.2-2_s390x.deb ... 202s Unpacking r-cran-ellipsis (0.3.2-2) ... 202s Selecting previously unselected package r-cran-htmltools. 202s Preparing to unpack .../215-r-cran-htmltools_0.5.7-1_s390x.deb ... 202s Unpacking r-cran-htmltools (0.5.7-1) ... 202s Selecting previously unselected package r-cran-fontawesome. 202s Preparing to unpack .../216-r-cran-fontawesome_0.5.2-1_all.deb ... 202s Unpacking r-cran-fontawesome (0.5.2-1) ... 202s Selecting previously unselected package r-cran-sourcetools. 202s Preparing to unpack .../217-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 202s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 202s Selecting previously unselected package r-cran-commonmark. 202s Preparing to unpack .../218-r-cran-commonmark_1.9.1-1_s390x.deb ... 202s Unpacking r-cran-commonmark (1.9.1-1) ... 202s Selecting previously unselected package r-cran-jquerylib. 202s Preparing to unpack .../219-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 202s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 202s Selecting previously unselected package r-cran-fs. 202s Preparing to unpack .../220-r-cran-fs_1.6.3+dfsg-1_s390x.deb ... 202s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 202s Selecting previously unselected package r-cran-sass. 202s Preparing to unpack .../221-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 202s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 202s Selecting previously unselected package r-cran-bslib. 202s Preparing to unpack .../222-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 202s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 202s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 202s Preparing to unpack .../223-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 202s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 202s Selecting previously unselected package r-cran-shiny. 202s Preparing to unpack .../224-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 202s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 203s Selecting previously unselected package r-cran-evaluate. 203s Preparing to unpack .../225-r-cran-evaluate_0.23-1_all.deb ... 203s Unpacking r-cran-evaluate (0.23-1) ... 203s Selecting previously unselected package r-cran-xfun. 203s Preparing to unpack .../226-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 203s Unpacking r-cran-xfun (0.41+dfsg-1) ... 203s Selecting previously unselected package r-cran-highr. 203s Preparing to unpack .../227-r-cran-highr_0.10+dfsg-1_all.deb ... 203s Unpacking r-cran-highr (0.10+dfsg-1) ... 203s Selecting previously unselected package libjs-mathjax. 203s Preparing to unpack .../228-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 203s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 203s Selecting previously unselected package r-cran-knitr. 203s Preparing to unpack .../229-r-cran-knitr_1.45+dfsg-1_all.deb ... 203s Unpacking r-cran-knitr (1.45+dfsg-1) ... 203s Selecting previously unselected package r-cran-tinytex. 203s Preparing to unpack .../230-r-cran-tinytex_0.49-1_all.deb ... 203s Unpacking r-cran-tinytex (0.49-1) ... 203s Selecting previously unselected package libjs-modernizr. 203s Preparing to unpack .../231-libjs-modernizr_2.6.2+ds1-5_all.deb ... 203s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 203s Selecting previously unselected package r-cran-rmarkdown. 203s Preparing to unpack .../232-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 203s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 203s Selecting previously unselected package r-cran-htmlwidgets. 203s Preparing to unpack .../233-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 203s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 203s Selecting previously unselected package r-cran-lazyeval. 203s Preparing to unpack .../234-r-cran-lazyeval_0.2.2-1build1_s390x.deb ... 203s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 203s Selecting previously unselected package r-cran-crosstalk. 203s Preparing to unpack .../235-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 203s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 203s Selecting previously unselected package r-cran-dt. 203s Preparing to unpack .../236-r-cran-dt_0.31+dfsg-1_all.deb ... 203s Unpacking r-cran-dt (0.31+dfsg-1) ... 203s Selecting previously unselected package r-bioc-interactivedisplaybase. 203s Preparing to unpack .../237-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 203s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 203s Selecting previously unselected package r-bioc-annotationhub. 203s Preparing to unpack .../238-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 203s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 204s Selecting previously unselected package r-bioc-biocio. 204s Preparing to unpack .../239-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 204s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 204s Selecting previously unselected package r-cran-formatr. 204s Preparing to unpack .../240-r-cran-formatr_1.14-1_all.deb ... 204s Unpacking r-cran-formatr (1.14-1) ... 204s Selecting previously unselected package r-cran-lambda.r. 204s Preparing to unpack .../241-r-cran-lambda.r_1.2.4-2build1_all.deb ... 204s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 204s Selecting previously unselected package r-cran-futile.options. 204s Preparing to unpack .../242-r-cran-futile.options_1.0.1-3build1_all.deb ... 204s Unpacking r-cran-futile.options (1.0.1-3build1) ... 204s Selecting previously unselected package r-cran-futile.logger. 204s Preparing to unpack .../243-r-cran-futile.logger_1.4.3-4build1_all.deb ... 204s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 204s Selecting previously unselected package r-cran-snow. 204s Preparing to unpack .../244-r-cran-snow_1%3a0.4.4-2_all.deb ... 204s Unpacking r-cran-snow (1:0.4.4-2) ... 204s Selecting previously unselected package r-cran-codetools. 204s Preparing to unpack .../245-r-cran-codetools_0.2-19-1_all.deb ... 204s Unpacking r-cran-codetools (0.2-19-1) ... 204s Selecting previously unselected package r-cran-bh. 204s Preparing to unpack .../246-r-cran-bh_1.84.0-1_all.deb ... 204s Unpacking r-cran-bh (1.84.0-1) ... 204s Selecting previously unselected package r-bioc-biocparallel. 204s Preparing to unpack .../247-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 204s Unpacking r-bioc-biocparallel (1.36.0-1) ... 204s Selecting previously unselected package r-cran-bookdown. 204s Preparing to unpack .../248-r-cran-bookdown_0.37+dfsg-1_all.deb ... 204s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 204s Selecting previously unselected package tex-common. 204s Preparing to unpack .../249-tex-common_6.18_all.deb ... 204s Unpacking tex-common (6.18) ... 204s Selecting previously unselected package t1utils. 204s Preparing to unpack .../250-t1utils_1.41-4build2_s390x.deb ... 204s Unpacking t1utils (1.41-4build2) ... 204s Selecting previously unselected package texlive-binaries. 204s Preparing to unpack .../251-texlive-binaries_2023.20230311.66589-9_s390x.deb ... 204s Unpacking texlive-binaries (2023.20230311.66589-9) ... 204s Selecting previously unselected package texlive-base. 204s Preparing to unpack .../252-texlive-base_2023.20240207-1_all.deb ... 204s Unpacking texlive-base (2023.20240207-1) ... 206s Selecting previously unselected package texlive-latex-base. 206s Preparing to unpack .../253-texlive-latex-base_2023.20240207-1_all.deb ... 206s Unpacking texlive-latex-base (2023.20240207-1) ... 206s Selecting previously unselected package texlive-bibtex-extra. 206s Preparing to unpack .../254-texlive-bibtex-extra_2023.20240207-1_all.deb ... 206s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 208s Selecting previously unselected package r-bioc-biocstyle. 208s Preparing to unpack .../255-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 208s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 208s Selecting previously unselected package r-cran-xml. 208s Preparing to unpack .../256-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 208s Unpacking r-cran-xml (3.99-0.16.1-1) ... 208s Selecting previously unselected package r-cran-hms. 208s Preparing to unpack .../257-r-cran-hms_1.1.3-1_all.deb ... 208s Unpacking r-cran-hms (1.1.3-1) ... 208s Selecting previously unselected package r-cran-prettyunits. 208s Preparing to unpack .../258-r-cran-prettyunits_1.2.0-1_all.deb ... 208s Unpacking r-cran-prettyunits (1.2.0-1) ... 208s Selecting previously unselected package r-cran-progress. 208s Preparing to unpack .../259-r-cran-progress_1.2.3-1_all.deb ... 208s Unpacking r-cran-progress (1.2.3-1) ... 208s Selecting previously unselected package r-cran-xml2. 208s Preparing to unpack .../260-r-cran-xml2_1.3.6-1_s390x.deb ... 208s Unpacking r-cran-xml2 (1.3.6-1) ... 208s Selecting previously unselected package r-bioc-biomart. 208s Preparing to unpack .../261-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 208s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 208s Selecting previously unselected package r-bioc-genomicranges. 208s Preparing to unpack .../262-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 208s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 208s Selecting previously unselected package r-bioc-rhtslib. 208s Preparing to unpack .../263-r-bioc-rhtslib_2.4.1+dfsg-1_s390x.deb ... 208s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 209s Selecting previously unselected package r-bioc-rsamtools. 209s Preparing to unpack .../264-r-bioc-rsamtools_2.18.0+dfsg-1build1_s390x.deb ... 209s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 209s Selecting previously unselected package r-cran-matrixstats. 209s Preparing to unpack .../265-r-cran-matrixstats_1.2.0-1_s390x.deb ... 209s Unpacking r-cran-matrixstats (1.2.0-1) ... 209s Selecting previously unselected package r-bioc-matrixgenerics. 209s Preparing to unpack .../266-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 209s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 209s Selecting previously unselected package r-cran-lattice. 209s Preparing to unpack .../267-r-cran-lattice_0.22-5-1_s390x.deb ... 209s Unpacking r-cran-lattice (0.22-5-1) ... 209s Selecting previously unselected package r-cran-matrix. 209s Preparing to unpack .../268-r-cran-matrix_1.6-5-1_s390x.deb ... 209s Unpacking r-cran-matrix (1.6-5-1) ... 209s Selecting previously unselected package r-cran-abind. 209s Preparing to unpack .../269-r-cran-abind_1.4-5-2_all.deb ... 209s Unpacking r-cran-abind (1.4-5-2) ... 209s Selecting previously unselected package r-bioc-s4arrays. 209s Preparing to unpack .../270-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 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Setting up r-cran-glue (1.7.0-1) ... 215s Setting up r-cran-bit (4.0.5-1) ... 215s Setting up r-cran-xtable (1:1.8-4-2) ... 215s Setting up r-cran-cli (3.6.2-1) ... 215s Setting up gfortran (4:13.2.0-7ubuntu1) ... 215s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 215s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 215s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 215s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 215s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 215s Setting up r-cran-bitops (1.0-7-1) ... 215s Setting up r-bioc-biocversion (3.18.1-1) ... 215s Setting up r-cran-bit64 (4.0.5-1) ... 215s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 215s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 215s Setting up r-cran-askpass (1.2.0-1) ... 215s Setting up r-cran-fastmap (1.1.1-1) ... 215s Setting up r-cran-png (0.1-8-1) ... 215s Setting up r-bioc-biobase (2.62.0-1) ... 215s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 215s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 215s Setting up r-cran-utf8 (1.2.4-1) ... 215s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 215s Setting up r-cran-stringi (1.8.3-1) ... 215s Setting up texlive-latex-base (2023.20240207-1) ... 215s Setting up r-cran-cpp11 (0.4.7-1) ... 215s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 215s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 215s Setting up r-cran-isoband (0.2.7-1) ... 215s Setting up r-cran-runit (0.4.32-3) ... 215s Setting up r-cran-futile.logger (1.4.3-4build1) ... 215s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 215s Setting up r-cran-later (1.3.2+dfsg-1) ... 215s Setting up r-cran-matrix (1.6-5-1) ... 215s Setting up r-cran-tinytex (0.49-1) ... 215s Setting up r-cran-knitr (1.45+dfsg-1) ... 215s Setting up r-cran-mgcv (1.9-1-1) ... 215s Setting up r-cran-cachem (1.0.8-1) ... 215s Setting up r-bioc-iranges (2.36.0-1) ... 215s Setting up r-cran-rjson (0.2.21-1) ... 215s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 215s Setting up r-cran-restfulr (0.0.15-1) ... 215s Setting up r-cran-vctrs (0.6.5-1) ... 215s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 215s Setting up r-cran-ellipsis (0.3.2-2) ... 215s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 215s Setting up r-base-dev (4.3.2-1build1) ... 215s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 215s Setting up r-cran-stringr (1.5.1-1) ... 215s Setting up r-bioc-biocparallel (1.36.0-1) ... 215s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 215s Setting up r-cran-xml2 (1.3.6-1) ... 215s Setting up r-cran-munsell (0.5.0-2build1) ... 215s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 215s Setting up r-cran-survival (3.5-8-1) ... 215s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 215s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 215s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ... 215s Setting up texlive-bibtex-extra (2023.20240207-1) ... 215s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 215s Setting up r-cran-httr (1.4.7+dfsg-1) ... 215s Setting up r-cran-hms (1.1.3-1) ... 215s Setting up r-cran-scales (1.3.0-1) ... 215s Setting up r-cran-memoise (2.0.1-1) ... 215s Setting up r-cran-promises (1.2.1+dfsg-1) ... 215s Setting up r-cran-purrr (1.0.2-1) ... 215s Setting up r-cran-blob (1.2.4-1) ... 215s Setting up r-cran-htmltools (0.5.7-1) ... 215s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 215s Setting up r-bioc-xvector (0.42.0-1) ... 215s Setting up r-cran-sass (0.4.8+dfsg-1) ... 215s Setting up r-cran-dplyr (1.1.4-1) ... 215s Setting up r-cran-rsqlite (2.3.4-1) ... 215s Setting up r-cran-progress (1.2.3-1) ... 215s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 215s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 215s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 215s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 215s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 215s Setting up r-cran-fontawesome (0.5.2-1) ... 215s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 215s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 215s Setting up r-cran-tidyr (1.3.1-1) ... 215s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 215s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 215s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 215s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 215s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 215s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 215s Setting up r-bioc-annotationdbi (1.64.1-1) ... 215s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 215s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 215s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 215s Setting up r-bioc-genomicalignments (1.38.2-1) ... 215s Setting up r-cran-bookdown (0.37+dfsg-1) ... 215s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 215s Setting up r-bioc-rtracklayer (1.62.0-1) ... 215s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 215s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 215s Setting up r-bioc-bsgenome (1.70.2-1) ... 215s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 215s Setting up r-cran-dt (0.31+dfsg-1) ... 215s Setting up r-bioc-variantannotation (1.48.1-1) ... 215s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 215s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 215s Setting up autopkgtest-satdep (0) ... 215s Processing triggers for man-db (2.12.0-3) ... 215s Processing triggers for install-info (7.1-3) ... 216s Processing triggers for libc-bin (2.39-0ubuntu2) ... 216s Processing triggers for tex-common (6.18) ... 216s Running updmap-sys. This may take some time... done. 216s Running mktexlsr /var/lib/texmf ... done. 216s Building format(s) --all. 261s This may take some time... done. 269s (Reading database ... 103761 files and directories currently installed.) 269s Removing autopkgtest-satdep (0) ... 270s autopkgtest [18:59:23]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 270s autopkgtest [18:59:23]: test pkg-r-autopkgtest: [----------------------- 270s Test: Try to load the R library VariantAnnotation 270s 270s R version 4.3.2 (2023-10-31) -- "Eye Holes" 270s Copyright (C) 2023 The R Foundation for Statistical Computing 270s Platform: s390x-ibm-linux-gnu (64-bit) 270s 270s R is free software and comes with ABSOLUTELY NO WARRANTY. 270s You are welcome to redistribute it under certain conditions. 270s Type 'license()' or 'licence()' for distribution details. 270s 270s R is a collaborative project with many contributors. 270s Type 'contributors()' for more information and 270s 'citation()' on how to cite R or R packages in publications. 270s 270s Type 'demo()' for some demos, 'help()' for on-line help, or 270s 'help.start()' for an HTML browser interface to help. 270s Type 'q()' to quit R. 270s 270s > library('VariantAnnotation') 270s Loading required package: BiocGenerics 270s 270s Attaching package: ‘BiocGenerics’ 270s 270s The following objects are masked from ‘package:stats’: 270s 270s IQR, mad, sd, var, xtabs 270s 270s The following objects are masked from ‘package:base’: 270s 270s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 270s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 270s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 270s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 270s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 270s table, tapply, union, unique, unsplit, which.max, which.min 270s 270s Loading required package: MatrixGenerics 270s Loading required package: matrixStats 271s 271s Attaching package: ‘MatrixGenerics’ 271s 271s The following objects are masked from ‘package:matrixStats’: 271s 271s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 271s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 271s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 271s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 271s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 271s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 271s colWeightedMeans, colWeightedMedians, colWeightedSds, 271s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 271s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 271s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 271s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 271s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 271s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 271s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 271s rowWeightedSds, rowWeightedVars 271s 271s Loading required package: GenomeInfoDb 271s Loading required package: S4Vectors 271s Loading required package: stats4 271s 271s Attaching package: ‘S4Vectors’ 271s 271s The following object is masked from ‘package:utils’: 271s 271s findMatches 271s 271s The following objects are masked from ‘package:base’: 271s 271s expand.grid, I, unname 271s 271s Loading required package: IRanges 272s Loading required package: GenomicRanges 273s Loading required package: SummarizedExperiment 273s Loading required package: Biobase 273s Welcome to Bioconductor 273s 273s Vignettes contain introductory material; view with 273s 'browseVignettes()'. To cite Bioconductor, see 273s 'citation("Biobase")', and for packages 'citation("pkgname")'. 273s 273s 273s Attaching package: ‘Biobase’ 273s 273s The following object is masked from ‘package:MatrixGenerics’: 273s 273s rowMedians 273s 273s The following objects are masked from ‘package:matrixStats’: 273s 273s anyMissing, rowMedians 273s 276s Loading required package: Rsamtools 276s Loading required package: Biostrings 276s Loading required package: XVector 277s 277s Attaching package: ‘Biostrings’ 277s 277s The following object is masked from ‘package:base’: 277s 277s strsplit 277s 283s 283s Attaching package: ‘VariantAnnotation’ 283s 283s The following object is masked from ‘package:base’: 283s 283s tabulate 283s 283s Warning message: 283s package ‘Rsamtools’ was built under R version 4.3.3 283s > 283s > 284s Other tests are currently unsupported! 284s They will be progressively added. 284s autopkgtest [18:59:37]: test pkg-r-autopkgtest: -----------------------] 284s autopkgtest [18:59:37]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 284s pkg-r-autopkgtest PASS 285s autopkgtest [18:59:38]: @@@@@@@@@@@@@@@@@@@@ summary 285s pkg-r-autopkgtest PASS 302s Creating nova instance adt-noble-s390x-r-bioc-variantannotation-20240316-185453-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...