0s autopkgtest [18:25:55]: starting date and time: 2024-03-16 18:25:55+0000 0s autopkgtest [18:25:55]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:25:55]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.f4qufuwb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rhtslib,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-variantannotation --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rhtslib/2.4.1+dfsg-3build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-4.secgroup --name adt-noble-s390x-r-bioc-variantannotation-20240316-182555-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 86s autopkgtest [18:27:21]: testbed dpkg architecture: s390x 86s autopkgtest [18:27:21]: testbed apt version: 2.7.12 86s autopkgtest [18:27:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 87s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 87s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 88s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 88s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 88s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 88s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB] 88s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 88s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 88s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 88s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3752 kB] 88s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 88s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB] 88s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 90s Fetched 8760 kB in 2s (3799 kB/s) 90s Reading package lists... 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s Calculating upgrade... 93s The following packages will be REMOVED: 93s libssl3 93s The following NEW packages will be installed: 93s libssl3t64 93s The following packages have been kept back: 93s curl 93s The following packages will be upgraded: 93s openssl ubuntu-minimal ubuntu-standard 93s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 93s Need to get 2680 kB of archives. 93s After this operation, 23.6 kB of additional disk space will be used. 93s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 94s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 95s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB] 95s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB] 95s Fetched 2680 kB in 2s (1576 kB/s) 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 95s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 95s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 95s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 95s wget depends on libssl3 (>= 3.0.0). 95s tnftp depends on libssl3 (>= 3.0.0). 95s tcpdump depends on libssl3 (>= 3.0.0). 95s systemd-resolved depends on libssl3 (>= 3.0.0). 95s systemd depends on libssl3 (>= 3.0.0). 95s sudo depends on libssl3 (>= 3.0.0). 95s s390-tools depends on libssl3 (>= 3.0.0). 95s rsync depends on libssl3 (>= 3.0.0). 95s python3-cryptography depends on libssl3 (>= 3.0.0). 95s openssh-server depends on libssl3 (>= 3.0.10). 95s openssh-client depends on libssl3 (>= 3.0.10). 95s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 95s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 95s libssh-4:s390x depends on libssl3 (>= 3.0.0). 95s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 95s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 95s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 95s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 95s libnvme1 depends on libssl3 (>= 3.0.0). 95s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 95s libkmod2:s390x depends on libssl3 (>= 3.0.0). 95s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 95s libcurl4:s390x depends on libssl3 (>= 3.0.0). 95s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 95s kmod depends on libssl3 (>= 3.0.0). 95s dhcpcd-base depends on libssl3 (>= 3.0.0). 95s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 95s 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 95s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 95s Selecting previously unselected package libssl3t64:s390x. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 95s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 95s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 96s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ... 96s Unpacking ubuntu-minimal (1.536) over (1.535) ... 96s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ... 96s Unpacking ubuntu-standard (1.536) over (1.535) ... 96s Setting up ubuntu-minimal (1.536) ... 96s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 96s Setting up ubuntu-standard (1.536) ... 96s Setting up openssl (3.0.13-0ubuntu1) ... 96s Processing triggers for man-db (2.12.0-3) ... 96s Processing triggers for libc-bin (2.39-0ubuntu2) ... 96s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 97s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 97s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 97s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 97s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 98s Reading package lists... 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Calculating upgrade... 99s The following packages have been kept back: 99s curl 99s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 102s autopkgtest [18:27:37]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 102s autopkgtest [18:27:37]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-variantannotation 105s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (dsc) [2587 B] 105s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (tar) [1887 kB] 105s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (diff) [7900 B] 105s gpgv: Signature made Fri Dec 1 09:59:29 2023 UTC 105s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 105s gpgv: issuer "tillea@rki.de" 105s gpgv: Can't check signature: No public key 105s dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.48.1-1.dsc: no acceptable signature found 105s autopkgtest [18:27:40]: testing package r-bioc-variantannotation version 1.48.1-1 105s autopkgtest [18:27:40]: build not needed 107s autopkgtest [18:27:42]: test pkg-r-autopkgtest: preparing testbed 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s Starting pkgProblemResolver with broken count: 0 109s Starting 2 pkgProblemResolver with broken count: 0 109s Done 109s The following additional packages will be installed: 109s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl 109s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 109s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 109s g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 109s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 109s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 109s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 109s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 109s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 109s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 109s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl 109s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 109s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 109s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 109s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 109s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 109s libjs-popper.js libjs-prettify libjs-sifter.js 109s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 109s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 109s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 109s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 109s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 109s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 109s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 109s libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 109s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 109s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 109s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 109s r-base-dev r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 109s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 109s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 109s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 109s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 109s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 109s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 109s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 109s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 109s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 109s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 109s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 109s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 109s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 109s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 109s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 109s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 109s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 109s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 109s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 109s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 109s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 109s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 109s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 109s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 109s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 109s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 109s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 109s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 109s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 109s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 109s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 109s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 109s x11-common xdg-utils zip zlib1g-dev 109s Suggested packages: 109s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 109s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 109s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 109s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 109s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 109s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 109s libboost-context1.83-dev libboost-contract1.83-dev 109s libboost-coroutine1.83-dev libboost-date-time1.83-dev 109s libboost-exception1.83-dev libboost-fiber1.83-dev 109s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 109s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 109s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 109s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 109s libboost-numpy1.83-dev libboost-program-options1.83-dev 109s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 109s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 109s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 109s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 109s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 109s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 109s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 109s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 109s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 109s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 109s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 109s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 109s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-ensembldb 109s r-bioc-experimenthub r-bioc-all r-cran-testthat r-bioc-affy r-bioc-deseq2 109s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 109s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 109s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 109s r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 109s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-dexseq 109s r-bioc-sparsematrixstats r-bioc-limma r-cran-hexbin r-bioc-rhdf5 109s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-kernsmooth r-cran-kernlab 109s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis 109s r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-magick r-cran-sf 109s r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins 109s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 109s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 109s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 109s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 109s texlive-latex-base-doc wp2latex 109s Recommended packages: 109s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 109s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-downlit 109s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 109s r-cran-webshot r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery 109s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 109s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 109s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-future 109s w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-hexbin 109s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 109s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 109s r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown r-cran-jpeg 109s r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate 109s r-cran-rgl r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 109s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-usethis 109s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 109s r-cran-dichromat r-cran-data.table r-cran-mockr r-cran-formattable 109s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 109s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 109s x11-xserver-utils 109s The following packages will be REMOVED: 109s libcurl4 libpsl5 109s The following NEW packages will be installed: 109s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 109s cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config 109s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 109s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 109s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 109s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 109s gfortran-s390x-linux-gnu icu-devtools javascript-common libasan8 libatomic1 109s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 109s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 109s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev 109s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 109s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 109s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 109s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 109s libjs-jquery-datatables libjs-jquery-datatables-extensions 109s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 109s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 109s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 109s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 109s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 109s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 109s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 109s libpng-dev libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 109s libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 109s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 109s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 109s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 109s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 109s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 109s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 109s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 109s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 109s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 109s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 109s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 109s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 109s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 109s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 109s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 109s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 109s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 109s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 109s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 109s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 109s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 109s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 109s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 109s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 109s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 109s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 109s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 109s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 109s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 109s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 109s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 109s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 109s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 109s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 109s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 109s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 109s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 109s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 109s x11-common xdg-utils zip zlib1g-dev 109s The following packages will be upgraded: 109s curl 109s 1 upgraded, 299 newly installed, 2 to remove and 0 not upgraded. 109s Need to get 469 MB/469 MB of archives. 109s After this operation, 1450 MB of additional disk space will be used. 109s Get:1 /tmp/autopkgtest.U3me5c/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [780 B] 109s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB] 110s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB] 110s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB] 110s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 110s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 110s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 110s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 110s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 110s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 110s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 111s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 111s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 111s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 112s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 112s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 112s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 112s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 112s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 112s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 112s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 112s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 112s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 112s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 113s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 113s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 113s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 113s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 113s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 114s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 114s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 114s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 114s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 114s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 114s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 114s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 114s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 114s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 114s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 114s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 114s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 114s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 114s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 114s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 114s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 114s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 114s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 114s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 114s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 114s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 114s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 114s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 114s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 114s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 114s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 114s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 114s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 115s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 115s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 115s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 115s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 115s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 115s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 115s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 115s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 115s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 115s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 115s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 115s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 115s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 115s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 115s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 115s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 116s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 116s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 116s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 116s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 116s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 116s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 116s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 116s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 116s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 116s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 116s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 116s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 116s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 116s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 116s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 116s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 116s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 116s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 116s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 116s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 116s Get:94 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 116s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9 [66.4 kB] 116s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 116s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 116s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 116s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 116s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 116s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 116s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 116s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 116s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 116s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 116s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 116s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 117s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 117s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 117s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 117s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 117s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 117s Get:113 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 117s Get:114 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 117s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9 [41.6 kB] 117s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 117s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 117s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 117s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9 [65.0 kB] 117s Get:120 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 117s Get:121 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 117s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9 [132 kB] 117s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 117s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 117s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 117s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 117s Get:127 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 117s Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 117s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 117s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3 [49.3 kB] 117s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 117s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1 [186 kB] 117s Get:133 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 117s Get:134 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13 s390x 0.13.72+dfsg.1-1.1 [26.1 kB] 117s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 117s Get:136 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 117s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 117s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 117s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 119s Get:140 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 119s Get:141 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 119s Get:142 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 119s Get:143 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 119s Get:144 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 119s Get:145 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 119s Get:146 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 120s Get:147 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 120s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 120s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 120s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 120s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 120s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 120s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 120s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 120s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 120s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 120s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 120s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 120s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 120s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 120s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 120s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 120s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 120s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 120s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 120s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 120s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 120s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 120s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 120s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB] 120s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 120s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 120s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 120s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 120s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB] 120s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 120s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 121s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB] 121s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 121s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 121s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 121s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1 [794 kB] 121s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 121s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 121s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 121s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 122s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 122s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 122s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 122s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 122s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 122s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 122s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 122s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 122s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 122s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 122s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 122s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 122s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 122s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 122s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 122s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 122s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 122s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 123s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 123s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocversion all 3.18.1-1 [11.0 kB] 123s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 123s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 123s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 123s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 123s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 124s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 124s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 124s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1 [519 kB] 124s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 124s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 124s Get:217 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 124s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 124s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 124s Get:220 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 124s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 124s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 124s Get:223 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 124s Get:224 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 124s Get:225 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 124s Get:226 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 125s Get:227 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 125s Get:228 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 125s Get:229 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 125s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 125s Get:231 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 125s Get:232 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 126s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 126s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 126s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 126s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 127s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 127s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lazyeval s390x 0.2.2-1build1 [143 kB] 127s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 127s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dt all 0.31+dfsg-1 [265 kB] 127s Get:241 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 127s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 127s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 127s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 127s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 127s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 127s Get:247 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 127s Get:248 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 127s Get:249 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 127s Get:250 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 127s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 127s Get:252 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 127s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 127s Get:254 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 127s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9 [9353 kB] 127s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 129s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 129s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 136s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 136s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 136s Get:261 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 136s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 136s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 136s Get:264 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 136s Get:265 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 136s Get:266 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 136s Get:267 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-3build1 [1409 kB] 136s Get:268 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1 [3688 kB] 136s Get:269 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 136s Get:270 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 136s Get:271 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 136s Get:272 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 137s Get:273 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 137s Get:274 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 137s Get:275 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 137s Get:276 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 137s Get:277 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 137s Get:278 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 137s Get:279 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 137s Get:280 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 137s Get:281 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 137s Get:282 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-bsgenome all 1.70.2-1 [6975 kB] 138s Get:283 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 138s Get:284 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-survival s390x 3.5-8-1 [6161 kB] 139s Get:285 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-snpstats s390x 1.52.0+dfsg-1 [7253 kB] 139s Get:286 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-variantannotation s390x 1.48.1-1 [3572 kB] 139s Get:287 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-colorspace s390x 2.1-0+dfsg-1 [1540 kB] 139s Get:288 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-farver s390x 2.1.1-1 [1347 kB] 140s Get:289 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 140s Get:290 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB] 140s Get:291 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 140s Get:292 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-nlme s390x 3.1.164-1 [2268 kB] 140s Get:293 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 140s Get:294 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB] 140s Get:295 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-munsell all 0.5.0-2build1 [208 kB] 140s Get:296 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 140s Get:297 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB] 140s Get:298 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-scales all 1.3.0-1 [603 kB] 140s Get:299 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 140s Get:300 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-runit all 0.4.32-3 [283 kB] 141s Preconfiguring packages ... 141s Fetched 469 MB in 31s (15.0 MB/s) 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 142s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ... 142s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 142s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested: 142s wget depends on libpsl5 (>= 0.16.0). 142s libcurl4:s390x depends on libpsl5 (>= 0.16.0). 142s libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0). 142s 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 142s Removing libpsl5:s390x (0.21.2-1build1) ... 142s Selecting previously unselected package libpsl5t64:s390x. 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52168 files and directories currently installed.) 142s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ... 142s Unpacking libpsl5t64:s390x (0.21.2-1.1) ... 142s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested: 142s s390-tools depends on libcurl4 (>= 7.16.2). 142s 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52174 files and directories currently installed.) 142s Removing libcurl4:s390x (8.5.0-2ubuntu2) ... 142s Selecting previously unselected package libcurl4t64:s390x. 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52169 files and directories currently installed.) 142s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ... 142s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ... 142s Selecting previously unselected package libc-dev-bin. 142s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 142s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 142s Selecting previously unselected package linux-libc-dev:s390x. 142s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ... 142s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 142s Selecting previously unselected package libcrypt-dev:s390x. 142s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 142s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 142s Selecting previously unselected package libtirpc-dev:s390x. 142s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 142s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 142s Selecting previously unselected package libnsl-dev:s390x. 142s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ... 142s Unpacking libnsl-dev:s390x (1.3.0-3) ... 142s Selecting previously unselected package rpcsvc-proto. 142s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 142s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 142s Selecting previously unselected package libc6-dev:s390x. 142s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ... 142s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 142s Selecting previously unselected package libisl23:s390x. 142s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ... 142s Unpacking libisl23:s390x (0.26-3) ... 142s Selecting previously unselected package libmpc3:s390x. 142s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ... 142s Unpacking libmpc3:s390x (1.3.1-1) ... 142s Selecting previously unselected package cpp-13-s390x-linux-gnu. 142s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 142s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 142s Selecting previously unselected package cpp-13. 142s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 142s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 142s Selecting previously unselected package cpp-s390x-linux-gnu. 142s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 142s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 142s Selecting previously unselected package cpp. 142s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 142s Unpacking cpp (4:13.2.0-7ubuntu1) ... 142s Selecting previously unselected package libcc1-0:s390x. 142s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 142s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 142s Selecting previously unselected package libgomp1:s390x. 142s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 142s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 142s Selecting previously unselected package libitm1:s390x. 142s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ... 142s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 142s Selecting previously unselected package libatomic1:s390x. 142s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 142s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 142s Selecting previously unselected package libasan8:s390x. 142s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ... 142s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 143s Selecting previously unselected package libubsan1:s390x. 143s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 143s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 143s Selecting previously unselected package libgcc-13-dev:s390x. 143s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 143s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package gcc-13-s390x-linux-gnu. 143s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 143s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package gcc-13. 143s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 143s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package gcc-s390x-linux-gnu. 143s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 143s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 143s Selecting previously unselected package gcc. 143s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 143s Unpacking gcc (4:13.2.0-7ubuntu1) ... 143s Selecting previously unselected package libstdc++-13-dev:s390x. 143s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 143s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package g++-13-s390x-linux-gnu. 143s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 143s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package g++-13. 143s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ... 143s Unpacking g++-13 (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package g++-s390x-linux-gnu. 143s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 143s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 143s Selecting previously unselected package g++. 143s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 143s Unpacking g++ (4:13.2.0-7ubuntu1) ... 143s Selecting previously unselected package build-essential. 143s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ... 143s Unpacking build-essential (12.10ubuntu1) ... 143s Selecting previously unselected package dctrl-tools. 144s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ... 144s Unpacking dctrl-tools (2.24-3build2) ... 144s Selecting previously unselected package libfreetype6:s390x. 144s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 144s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 144s Selecting previously unselected package fonts-dejavu-mono. 144s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 144s Unpacking fonts-dejavu-mono (2.37-8) ... 144s Selecting previously unselected package fonts-dejavu-core. 144s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 144s Unpacking fonts-dejavu-core (2.37-8) ... 144s Selecting previously unselected package fontconfig-config. 144s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 144s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 144s Selecting previously unselected package libfontconfig1:s390x. 144s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 144s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 144s Selecting previously unselected package fontconfig. 144s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 144s Unpacking fontconfig (2.15.0-1ubuntu1) ... 144s Selecting previously unselected package fonts-font-awesome. 144s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 144s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 144s Selecting previously unselected package fonts-glyphicons-halflings. 144s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 144s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 144s Selecting previously unselected package fonts-lmodern. 144s Preparing to unpack .../040-fonts-lmodern_2.005-1_all.deb ... 144s Unpacking fonts-lmodern (2.005-1) ... 144s Selecting previously unselected package fonts-mathjax. 144s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 144s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 144s Selecting previously unselected package libgfortran5:s390x. 144s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 144s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 144s Selecting previously unselected package libgfortran-13-dev:s390x. 144s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 144s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 144s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 144s Preparing to unpack .../044-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 144s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 145s Selecting previously unselected package gfortran-13. 145s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 145s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 145s Selecting previously unselected package gfortran-s390x-linux-gnu. 145s Preparing to unpack .../046-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 145s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 145s Selecting previously unselected package gfortran. 145s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 145s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 145s Selecting previously unselected package icu-devtools. 145s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_s390x.deb ... 145s Unpacking icu-devtools (74.2-1ubuntu1) ... 145s Selecting previously unselected package javascript-common. 145s Preparing to unpack .../049-javascript-common_11+nmu1_all.deb ... 145s Unpacking javascript-common (11+nmu1) ... 145s Selecting previously unselected package libio-string-perl. 145s Preparing to unpack .../050-libio-string-perl_1.08-4_all.deb ... 145s Unpacking libio-string-perl (1.08-4) ... 145s Selecting previously unselected package liblatex-tounicode-perl. 145s Preparing to unpack .../051-liblatex-tounicode-perl_0.54-2_all.deb ... 145s Unpacking liblatex-tounicode-perl (0.54-2) ... 145s Selecting previously unselected package libbibtex-parser-perl. 145s Preparing to unpack .../052-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 145s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 145s Selecting previously unselected package libblas3:s390x. 145s Preparing to unpack .../053-libblas3_3.12.0-3_s390x.deb ... 145s Unpacking libblas3:s390x (3.12.0-3) ... 145s Selecting previously unselected package libblas-dev:s390x. 145s Preparing to unpack .../054-libblas-dev_3.12.0-3_s390x.deb ... 145s Unpacking libblas-dev:s390x (3.12.0-3) ... 145s Selecting previously unselected package libboost1.83-dev:s390x. 145s Preparing to unpack .../055-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 145s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 147s Selecting previously unselected package libboost-dev:s390x. 147s Preparing to unpack .../056-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 147s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 147s Selecting previously unselected package libbz2-dev:s390x. 147s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 147s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 147s Selecting previously unselected package libpixman-1-0:s390x. 147s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_s390x.deb ... 147s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 147s Selecting previously unselected package libxcb-render0:s390x. 147s Preparing to unpack .../059-libxcb-render0_1.15-1_s390x.deb ... 147s Unpacking libxcb-render0:s390x (1.15-1) ... 147s Selecting previously unselected package libxcb-shm0:s390x. 147s Preparing to unpack .../060-libxcb-shm0_1.15-1_s390x.deb ... 147s Unpacking libxcb-shm0:s390x (1.15-1) ... 147s Selecting previously unselected package libxrender1:s390x. 147s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 147s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 147s Selecting previously unselected package libcairo2:s390x. 147s Preparing to unpack .../062-libcairo2_1.18.0-1_s390x.deb ... 147s Unpacking libcairo2:s390x (1.18.0-1) ... 147s Selecting previously unselected package libdatrie1:s390x. 147s Preparing to unpack .../063-libdatrie1_0.2.13-3_s390x.deb ... 147s Unpacking libdatrie1:s390x (0.2.13-3) ... 147s Selecting previously unselected package libdeflate0:s390x. 147s Preparing to unpack .../064-libdeflate0_1.19-1_s390x.deb ... 147s Unpacking libdeflate0:s390x (1.19-1) ... 147s Selecting previously unselected package libgraphite2-3:s390x. 147s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_s390x.deb ... 147s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 147s Selecting previously unselected package libharfbuzz0b:s390x. 147s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_s390x.deb ... 147s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 147s Selecting previously unselected package x11-common. 147s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 147s Unpacking x11-common (1:7.7+23ubuntu2) ... 147s Selecting previously unselected package libice6:s390x. 147s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_s390x.deb ... 147s Unpacking libice6:s390x (2:1.0.10-1build2) ... 147s Selecting previously unselected package libicu-dev:s390x. 147s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_s390x.deb ... 147s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 147s Selecting previously unselected package libjpeg-turbo8:s390x. 147s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 147s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 147s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 147s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 147s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 147s Selecting previously unselected package libjpeg8:s390x. 147s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_s390x.deb ... 147s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 147s Selecting previously unselected package libjpeg8-dev:s390x. 147s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 147s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 147s Selecting previously unselected package libjpeg-dev:s390x. 147s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 147s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 147s Selecting previously unselected package libjs-bootstrap. 147s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 147s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 147s Selecting previously unselected package libjs-popper.js. 147s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6_all.deb ... 147s Unpacking libjs-popper.js (1.16.1+ds-6) ... 147s Selecting previously unselected package libjs-bootstrap4. 147s Preparing to unpack .../077-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 147s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 147s Selecting previously unselected package libjs-d3. 147s Preparing to unpack .../078-libjs-d3_3.5.17-4_all.deb ... 147s Unpacking libjs-d3 (3.5.17-4) ... 147s Selecting previously unselected package libjs-es5-shim. 147s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ... 147s Unpacking libjs-es5-shim (4.6.7-2) ... 147s Selecting previously unselected package libjs-highlight.js. 147s Preparing to unpack .../080-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 147s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 148s Selecting previously unselected package libjs-jquery. 148s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 148s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 148s Selecting previously unselected package libjs-jquery-datatables. 148s Preparing to unpack .../082-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 148s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 148s Selecting previously unselected package libjs-jquery-datatables-extensions. 148s Preparing to unpack .../083-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 148s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 148s Selecting previously unselected package libjs-sifter.js. 148s Preparing to unpack .../084-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 148s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 148s Selecting previously unselected package libjs-microplugin.js. 148s 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148s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ... 148s Selecting previously unselected package libpcre2-dev:s390x. 148s Preparing to unpack .../106-libpcre2-dev_10.42-4ubuntu1_s390x.deb ... 148s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ... 148s Selecting previously unselected package libpkgconf3:s390x. 148s Preparing to unpack .../107-libpkgconf3_1.8.1-2_s390x.deb ... 148s Unpacking libpkgconf3:s390x (1.8.1-2) ... 148s Selecting previously unselected package zlib1g-dev:s390x. 148s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 148s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 148s Selecting previously unselected package libpng-dev:s390x. 148s Preparing to unpack .../109-libpng-dev_1.6.43-1_s390x.deb ... 148s Unpacking libpng-dev:s390x (1.6.43-1) ... 148s Selecting previously unselected package libpotrace0:s390x. 148s Preparing to unpack .../110-libpotrace0_1.16-2_s390x.deb ... 148s Unpacking libpotrace0:s390x (1.16-2) ... 148s Selecting previously unselected package libptexenc1:s390x. 148s Preparing to unpack .../111-libptexenc1_2023.20230311.66589-9_s390x.deb ... 148s Unpacking libptexenc1:s390x (2023.20230311.66589-9) ... 148s Selecting previously unselected package libreadline-dev:s390x. 148s Preparing to unpack .../112-libreadline-dev_8.2-3_s390x.deb ... 148s Unpacking libreadline-dev:s390x (8.2-3) ... 148s Selecting previously unselected package libsharpyuv0:s390x. 149s Preparing to unpack .../113-libsharpyuv0_1.3.2-0.4_s390x.deb ... 149s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 149s Selecting previously unselected package libsm6:s390x. 149s Preparing to unpack .../114-libsm6_2%3a1.2.3-1build2_s390x.deb ... 149s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 149s Selecting previously unselected package libsynctex2:s390x. 149s Preparing to unpack .../115-libsynctex2_2023.20230311.66589-9_s390x.deb ... 149s Unpacking libsynctex2:s390x (2023.20230311.66589-9) ... 149s Selecting previously unselected package libtcl8.6:s390x. 149s Preparing to unpack .../116-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 149s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 149s Selecting previously unselected package libteckit0:s390x. 149s Preparing to unpack .../117-libteckit0_2.5.12+ds1-1_s390x.deb ... 149s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 149s Selecting previously unselected package libtexlua53-5:s390x. 149s Preparing to unpack .../118-libtexlua53-5_2023.20230311.66589-9_s390x.deb ... 149s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9) ... 149s Selecting previously unselected package libjbig0:s390x. 149s Preparing to unpack .../119-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 149s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 149s Selecting previously unselected package libwebp7:s390x. 149s Preparing to unpack .../120-libwebp7_1.3.2-0.4_s390x.deb ... 149s Unpacking libwebp7:s390x (1.3.2-0.4) ... 149s Selecting previously unselected package libtiff6:s390x. 149s Preparing to unpack .../121-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 149s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 149s Selecting previously unselected package libxft2:s390x. 149s Preparing to unpack .../122-libxft2_2.3.6-1_s390x.deb ... 149s Unpacking libxft2:s390x (2.3.6-1) ... 149s Selecting previously unselected package libxss1:s390x. 149s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build2_s390x.deb ... 149s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 149s Selecting previously unselected package libtk8.6:s390x. 149s Preparing to unpack .../124-libtk8.6_8.6.13-2_s390x.deb ... 149s Unpacking libtk8.6:s390x (8.6.13-2) ... 149s Selecting previously unselected package libxt6:s390x. 149s Preparing to unpack .../125-libxt6_1%3a1.2.1-1.1_s390x.deb ... 149s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 149s Selecting previously unselected package libxmu6:s390x. 149s Preparing to unpack .../126-libxmu6_2%3a1.1.3-3_s390x.deb ... 149s Unpacking libxmu6:s390x (2:1.1.3-3) ... 149s Selecting previously unselected package libxpm4:s390x. 149s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1_s390x.deb ... 149s Unpacking libxpm4:s390x (1:3.5.17-1) ... 149s Selecting previously unselected package libxaw7:s390x. 149s Preparing to unpack .../128-libxaw7_2%3a1.0.14-1_s390x.deb ... 149s Unpacking libxaw7:s390x (2:1.0.14-1) ... 149s Selecting previously unselected package libxi6:s390x. 149s Preparing to unpack .../129-libxi6_2%3a1.8.1-1_s390x.deb ... 149s Unpacking libxi6:s390x (2:1.8.1-1) ... 149s Selecting previously unselected package libzzip-0-13:s390x. 149s Preparing to unpack .../130-libzzip-0-13_0.13.72+dfsg.1-1.1_s390x.deb ... 149s Unpacking libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 149s Selecting previously unselected package node-bootstrap-sass. 149s Preparing to unpack .../131-node-bootstrap-sass_3.4.3-2_all.deb ... 149s Unpacking node-bootstrap-sass (3.4.3-2) ... 149s Selecting previously unselected package node-html5shiv. 149s Preparing to unpack .../132-node-html5shiv_3.7.3+dfsg-5_all.deb ... 149s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 149s Selecting previously unselected package node-normalize.css. 149s Preparing to unpack .../133-node-normalize.css_8.0.1-5_all.deb ... 149s Unpacking node-normalize.css (8.0.1-5) ... 149s Selecting previously unselected package pandoc-data. 149s Preparing to unpack .../134-pandoc-data_3.1.3-1_all.deb ... 149s Unpacking pandoc-data (3.1.3-1) ... 149s Selecting previously unselected package pandoc. 149s Preparing to unpack .../135-pandoc_3.1.3+ds-2_s390x.deb ... 149s Unpacking pandoc (3.1.3+ds-2) ... 151s Selecting previously unselected package pkgconf-bin. 151s Preparing to unpack .../136-pkgconf-bin_1.8.1-2_s390x.deb ... 151s Unpacking pkgconf-bin (1.8.1-2) ... 151s Selecting previously unselected package pkgconf:s390x. 151s Preparing to unpack .../137-pkgconf_1.8.1-2_s390x.deb ... 151s Unpacking pkgconf:s390x (1.8.1-2) ... 151s Selecting previously unselected package pkg-config:s390x. 151s Preparing to unpack .../138-pkg-config_1.8.1-2_s390x.deb ... 151s Unpacking pkg-config:s390x (1.8.1-2) ... 151s Selecting previously unselected package zip. 151s Preparing to unpack .../139-zip_3.0-13_s390x.deb ... 151s Unpacking zip (3.0-13) ... 151s Selecting previously unselected package unzip. 151s Preparing to unpack .../140-unzip_6.0-28ubuntu3_s390x.deb ... 151s Unpacking unzip (6.0-28ubuntu3) ... 151s Selecting previously unselected package xdg-utils. 151s Preparing to unpack .../141-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 151s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 151s Selecting previously unselected package r-base-core. 151s Preparing to unpack .../142-r-base-core_4.3.2-1build1_s390x.deb ... 151s Unpacking r-base-core (4.3.2-1build1) ... 151s Selecting previously unselected package liblzma-dev:s390x. 151s Preparing to unpack .../143-liblzma-dev_5.4.5-0.3_s390x.deb ... 151s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 151s Selecting previously unselected package r-base-dev. 151s Preparing to unpack .../144-r-base-dev_4.3.2-1build1_all.deb ... 151s Unpacking r-base-dev (4.3.2-1build1) ... 151s Selecting previously unselected package pkg-r-autopkgtest. 151s Preparing to unpack .../145-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 151s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 151s Selecting previously unselected package r-bioc-biocgenerics. 151s Preparing to unpack .../146-r-bioc-biocgenerics_0.48.1-2_all.deb ... 151s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 151s Selecting previously unselected package r-bioc-biobase. 151s Preparing to unpack .../147-r-bioc-biobase_2.62.0-1_s390x.deb ... 151s Unpacking r-bioc-biobase (2.62.0-1) ... 151s Selecting previously unselected package r-bioc-s4vectors. 151s Preparing to unpack .../148-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 151s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 152s Selecting previously unselected package r-bioc-iranges. 152s Preparing to unpack .../149-r-bioc-iranges_2.36.0-1_s390x.deb ... 152s Unpacking r-bioc-iranges (2.36.0-1) ... 152s Selecting previously unselected package r-cran-dbi. 152s Preparing to unpack .../150-r-cran-dbi_1.2.2-1_all.deb ... 152s Unpacking r-cran-dbi (1.2.2-1) ... 152s Selecting previously unselected package r-cran-bit. 152s Preparing to unpack .../151-r-cran-bit_4.0.5-1_s390x.deb ... 152s Unpacking r-cran-bit (4.0.5-1) ... 152s Selecting previously unselected package r-cran-bit64. 152s Preparing to unpack .../152-r-cran-bit64_4.0.5-1_s390x.deb ... 152s Unpacking r-cran-bit64 (4.0.5-1) ... 152s Selecting previously unselected package r-cran-rlang. 152s Preparing to unpack .../153-r-cran-rlang_1.1.3-1_s390x.deb ... 152s Unpacking r-cran-rlang (1.1.3-1) ... 152s Selecting previously unselected package r-cran-cli. 152s Preparing to unpack .../154-r-cran-cli_3.6.2-1_s390x.deb ... 152s Unpacking r-cran-cli (3.6.2-1) ... 152s Selecting previously unselected package r-cran-glue. 152s Preparing to unpack .../155-r-cran-glue_1.7.0-1_s390x.deb ... 152s Unpacking r-cran-glue (1.7.0-1) ... 152s Selecting previously unselected package r-cran-lifecycle. 152s Preparing to unpack .../156-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 152s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 152s Selecting previously unselected package r-cran-vctrs. 152s Preparing to unpack .../157-r-cran-vctrs_0.6.5-1_s390x.deb ... 152s Unpacking r-cran-vctrs (0.6.5-1) ... 152s Selecting previously unselected package r-cran-blob. 152s Preparing to unpack .../158-r-cran-blob_1.2.4-1_all.deb ... 152s Unpacking r-cran-blob (1.2.4-1) ... 152s Selecting previously unselected package r-cran-fastmap. 152s Preparing to unpack .../159-r-cran-fastmap_1.1.1-1_s390x.deb ... 152s Unpacking r-cran-fastmap (1.1.1-1) ... 152s Selecting previously unselected package r-cran-cachem. 152s Preparing to unpack .../160-r-cran-cachem_1.0.8-1_s390x.deb ... 152s Unpacking r-cran-cachem (1.0.8-1) ... 152s Selecting previously unselected package r-cran-memoise. 152s Preparing to unpack .../161-r-cran-memoise_2.0.1-1_all.deb ... 152s Unpacking r-cran-memoise (2.0.1-1) ... 152s Selecting previously unselected package r-cran-pkgconfig. 152s Preparing to unpack .../162-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 152s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 152s Selecting previously unselected package r-cran-plogr. 152s Preparing to unpack .../163-r-cran-plogr_0.2.0-3build1_all.deb ... 152s Unpacking r-cran-plogr (0.2.0-3build1) ... 152s Selecting previously unselected package r-cran-cpp11. 152s Preparing to unpack .../164-r-cran-cpp11_0.4.7-1_all.deb ... 152s Unpacking r-cran-cpp11 (0.4.7-1) ... 152s Selecting previously unselected package r-cran-rsqlite. 152s Preparing to unpack .../165-r-cran-rsqlite_2.3.4-1_s390x.deb ... 152s Unpacking r-cran-rsqlite (2.3.4-1) ... 152s Selecting previously unselected package r-cran-curl. 152s Preparing to unpack .../166-r-cran-curl_5.2.0+dfsg-1_s390x.deb ... 152s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 152s Selecting previously unselected package r-cran-jsonlite. 152s Preparing to unpack .../167-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 152s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 152s Selecting previously unselected package r-cran-mime. 152s Preparing to unpack .../168-r-cran-mime_0.12-1_s390x.deb ... 152s Unpacking r-cran-mime (0.12-1) ... 152s Selecting previously unselected package r-cran-sys. 152s Preparing to unpack .../169-r-cran-sys_3.4.2-1_s390x.deb ... 152s Unpacking r-cran-sys (3.4.2-1) ... 152s Selecting previously unselected package r-cran-askpass. 152s Preparing to unpack .../170-r-cran-askpass_1.2.0-1_s390x.deb ... 152s Unpacking r-cran-askpass (1.2.0-1) ... 152s Selecting previously unselected package r-cran-openssl. 152s Preparing to unpack .../171-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ... 152s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 152s Selecting previously unselected package r-cran-r6. 152s Preparing to unpack .../172-r-cran-r6_2.5.1-1_all.deb ... 152s Unpacking r-cran-r6 (2.5.1-1) ... 152s Selecting previously unselected package r-cran-httr. 152s Preparing to unpack .../173-r-cran-httr_1.4.7+dfsg-1_all.deb ... 152s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 152s Selecting previously unselected package r-cran-png. 152s Preparing to unpack .../174-r-cran-png_0.1-8-1_s390x.deb ... 152s Unpacking r-cran-png (0.1-8-1) ... 152s Selecting previously unselected package r-bioc-zlibbioc. 152s Preparing to unpack .../175-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 152s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 152s Selecting previously unselected package r-bioc-xvector. 152s Preparing to unpack .../176-r-bioc-xvector_0.42.0-1_s390x.deb ... 152s Unpacking r-bioc-xvector (0.42.0-1) ... 152s Selecting previously unselected package r-cran-bitops. 152s Preparing to unpack .../177-r-cran-bitops_1.0-7-1_s390x.deb ... 152s Unpacking r-cran-bitops (1.0-7-1) ... 152s Selecting previously unselected package r-cran-rcurl. 152s Preparing to unpack .../178-r-cran-rcurl_1.98-1.14+dfsg-1_s390x.deb ... 152s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 152s Selecting previously unselected package r-bioc-genomeinfodbdata. 152s Preparing to unpack .../179-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 152s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 153s Selecting previously unselected package r-bioc-genomeinfodb. 153s Preparing to unpack .../180-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 153s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 153s Selecting previously unselected package r-cran-crayon. 153s Preparing to unpack .../181-r-cran-crayon_1.5.2-1_all.deb ... 153s Unpacking r-cran-crayon (1.5.2-1) ... 153s Selecting previously unselected package r-bioc-biostrings. 153s Preparing to unpack .../182-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 153s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 153s Selecting previously unselected package r-bioc-keggrest. 153s Preparing to unpack .../183-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 153s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 153s Selecting previously unselected package r-bioc-annotationdbi. 153s Preparing to unpack .../184-r-bioc-annotationdbi_1.64.1-1_all.deb ... 153s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 153s Selecting previously unselected package r-cran-generics. 153s Preparing to unpack .../185-r-cran-generics_0.1.3-1_all.deb ... 153s Unpacking r-cran-generics (0.1.3-1) ... 153s Selecting previously unselected package r-cran-magrittr. 153s Preparing to unpack .../186-r-cran-magrittr_2.0.3-1_s390x.deb ... 153s Unpacking r-cran-magrittr (2.0.3-1) ... 153s Selecting previously unselected package r-cran-fansi. 153s Preparing to unpack .../187-r-cran-fansi_1.0.5-1_s390x.deb ... 153s Unpacking r-cran-fansi (1.0.5-1) ... 153s Selecting previously unselected package r-cran-utf8. 153s Preparing to unpack .../188-r-cran-utf8_1.2.4-1_s390x.deb ... 153s Unpacking r-cran-utf8 (1.2.4-1) ... 153s Selecting previously unselected package r-cran-pillar. 153s Preparing to unpack .../189-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 153s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 153s Selecting previously unselected package r-cran-tibble. 153s Preparing to unpack .../190-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 153s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 153s Selecting previously unselected package r-cran-withr. 153s Preparing to unpack .../191-r-cran-withr_2.5.0-1_all.deb ... 153s Unpacking r-cran-withr (2.5.0-1) ... 153s Selecting previously unselected package r-cran-tidyselect. 153s Preparing to unpack .../192-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 153s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 153s Selecting previously unselected package r-cran-dplyr. 153s Preparing to unpack .../193-r-cran-dplyr_1.1.4-1_s390x.deb ... 153s Unpacking r-cran-dplyr (1.1.4-1) ... 153s Selecting previously unselected package r-cran-purrr. 153s Preparing to unpack .../194-r-cran-purrr_1.0.2-1_s390x.deb ... 153s Unpacking r-cran-purrr (1.0.2-1) ... 153s Selecting previously unselected package r-cran-stringi. 153s Preparing to unpack .../195-r-cran-stringi_1.8.3-1_s390x.deb ... 153s Unpacking r-cran-stringi (1.8.3-1) ... 153s Selecting previously unselected package r-cran-stringr. 153s Preparing to unpack .../196-r-cran-stringr_1.5.1-1_all.deb ... 153s Unpacking r-cran-stringr (1.5.1-1) ... 153s Selecting previously unselected package r-cran-tidyr. 153s Preparing to unpack .../197-r-cran-tidyr_1.3.1-1_s390x.deb ... 153s Unpacking r-cran-tidyr (1.3.1-1) ... 153s Selecting previously unselected package r-cran-dbplyr. 153s Preparing to unpack .../198-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 153s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 153s Selecting previously unselected package r-cran-filelock. 153s Preparing to unpack .../199-r-cran-filelock_1.0.3-1_s390x.deb ... 153s Unpacking r-cran-filelock (1.0.3-1) ... 153s Selecting previously unselected package r-bioc-biocfilecache. 153s Preparing to unpack .../200-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 153s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 153s Selecting previously unselected package r-cran-biocmanager. 153s Preparing to unpack .../201-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 153s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 153s Selecting previously unselected package r-bioc-biocversion. 153s Preparing to unpack .../202-r-bioc-biocversion_3.18.1-1_all.deb ... 153s Unpacking r-bioc-biocversion (3.18.1-1) ... 153s Selecting previously unselected package r-cran-rappdirs. 153s Preparing to unpack .../203-r-cran-rappdirs_0.3.3-1_s390x.deb ... 153s Unpacking r-cran-rappdirs (0.3.3-1) ... 153s Selecting previously unselected package r-cran-yaml. 153s Preparing to unpack .../204-r-cran-yaml_2.3.8-1_s390x.deb ... 153s Unpacking r-cran-yaml (2.3.8-1) ... 153s Selecting previously unselected package r-cran-littler. 153s Preparing to unpack .../205-r-cran-littler_0.3.19-1_s390x.deb ... 153s Unpacking r-cran-littler (0.3.19-1) ... 153s Selecting previously unselected package r-cran-pkgkitten. 153s Preparing to unpack .../206-r-cran-pkgkitten_0.2.3-1_all.deb ... 153s Unpacking r-cran-pkgkitten (0.2.3-1) ... 153s Selecting previously unselected package r-cran-rcpp. 153s Preparing to unpack .../207-r-cran-rcpp_1.0.12-1_s390x.deb ... 153s Unpacking r-cran-rcpp (1.0.12-1) ... 154s Selecting previously unselected package r-cran-later. 154s Preparing to unpack .../208-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 154s Unpacking r-cran-later (1.3.2+dfsg-1) ... 154s Selecting previously unselected package r-cran-promises. 154s Preparing to unpack .../209-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 154s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 154s Selecting previously unselected package r-cran-httpuv. 154s Preparing to unpack .../210-r-cran-httpuv_1.6.14+dfsg-1_s390x.deb ... 154s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 154s Selecting previously unselected package r-cran-xtable. 154s Preparing to unpack .../211-r-cran-xtable_1%3a1.8-4-2_all.deb ... 154s Unpacking r-cran-xtable (1:1.8-4-2) ... 154s Selecting previously unselected package r-cran-base64enc. 154s Preparing to unpack .../212-r-cran-base64enc_0.1-3-3_s390x.deb ... 154s Unpacking r-cran-base64enc (0.1-3-3) ... 154s Selecting previously unselected package r-cran-digest. 154s Preparing to unpack .../213-r-cran-digest_0.6.34-1_s390x.deb ... 154s Unpacking r-cran-digest (0.6.34-1) ... 154s Selecting previously unselected package r-cran-ellipsis. 154s Preparing to unpack .../214-r-cran-ellipsis_0.3.2-2_s390x.deb ... 154s Unpacking r-cran-ellipsis (0.3.2-2) ... 154s Selecting previously unselected package r-cran-htmltools. 154s Preparing to unpack .../215-r-cran-htmltools_0.5.7-1_s390x.deb ... 154s Unpacking r-cran-htmltools (0.5.7-1) ... 154s Selecting previously unselected package r-cran-fontawesome. 154s Preparing to unpack .../216-r-cran-fontawesome_0.5.2-1_all.deb ... 154s Unpacking r-cran-fontawesome (0.5.2-1) ... 154s Selecting previously unselected package r-cran-sourcetools. 154s Preparing to unpack .../217-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 154s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 154s Selecting previously unselected package r-cran-commonmark. 154s Preparing to unpack .../218-r-cran-commonmark_1.9.1-1_s390x.deb ... 154s Unpacking r-cran-commonmark (1.9.1-1) ... 154s Selecting previously unselected package r-cran-jquerylib. 154s Preparing to unpack .../219-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 154s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 154s Selecting previously unselected package r-cran-fs. 154s Preparing to unpack .../220-r-cran-fs_1.6.3+dfsg-1_s390x.deb ... 154s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 154s Selecting previously unselected package r-cran-sass. 154s Preparing to unpack .../221-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 154s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 154s Selecting previously unselected package r-cran-bslib. 154s Preparing to unpack .../222-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 154s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 154s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 154s Preparing to unpack .../223-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 154s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 154s Selecting previously unselected package r-cran-shiny. 154s Preparing to unpack .../224-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 154s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 154s Selecting previously unselected package r-cran-evaluate. 154s Preparing to unpack .../225-r-cran-evaluate_0.23-1_all.deb ... 154s Unpacking r-cran-evaluate (0.23-1) ... 154s Selecting previously unselected package r-cran-xfun. 154s Preparing to unpack .../226-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 154s Unpacking r-cran-xfun (0.41+dfsg-1) ... 154s Selecting previously unselected package r-cran-highr. 154s Preparing to unpack .../227-r-cran-highr_0.10+dfsg-1_all.deb ... 154s Unpacking r-cran-highr (0.10+dfsg-1) ... 154s Selecting previously unselected package libjs-mathjax. 154s Preparing to unpack .../228-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 154s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 155s Selecting previously unselected package r-cran-knitr. 155s Preparing to unpack .../229-r-cran-knitr_1.45+dfsg-1_all.deb ... 155s Unpacking r-cran-knitr (1.45+dfsg-1) ... 155s Selecting previously unselected package r-cran-tinytex. 155s Preparing to unpack .../230-r-cran-tinytex_0.49-1_all.deb ... 155s Unpacking r-cran-tinytex (0.49-1) ... 155s Selecting previously unselected package libjs-modernizr. 155s Preparing to unpack .../231-libjs-modernizr_2.6.2+ds1-5_all.deb ... 155s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 155s Selecting previously unselected package r-cran-rmarkdown. 155s Preparing to unpack .../232-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 155s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 155s Selecting previously unselected package r-cran-htmlwidgets. 155s Preparing to unpack .../233-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 155s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 155s Selecting previously unselected package r-cran-lazyeval. 155s Preparing to unpack .../234-r-cran-lazyeval_0.2.2-1build1_s390x.deb ... 155s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 155s Selecting previously unselected package r-cran-crosstalk. 155s Preparing to unpack .../235-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 155s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 155s Selecting previously unselected package r-cran-dt. 155s Preparing to unpack .../236-r-cran-dt_0.31+dfsg-1_all.deb ... 155s Unpacking r-cran-dt (0.31+dfsg-1) ... 155s Selecting previously unselected package r-bioc-interactivedisplaybase. 155s Preparing to unpack .../237-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 155s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 155s Selecting previously unselected package r-bioc-annotationhub. 155s Preparing to unpack .../238-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 155s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 155s Selecting previously unselected package r-bioc-biocio. 155s Preparing to unpack .../239-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 155s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 155s Selecting previously unselected package r-cran-formatr. 155s Preparing to unpack .../240-r-cran-formatr_1.14-1_all.deb ... 155s Unpacking r-cran-formatr (1.14-1) ... 155s Selecting previously unselected package r-cran-lambda.r. 155s Preparing to unpack .../241-r-cran-lambda.r_1.2.4-2build1_all.deb ... 155s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 155s Selecting previously unselected package r-cran-futile.options. 155s Preparing to unpack .../242-r-cran-futile.options_1.0.1-3build1_all.deb ... 155s Unpacking r-cran-futile.options (1.0.1-3build1) ... 156s Selecting previously unselected package r-cran-futile.logger. 156s Preparing to unpack .../243-r-cran-futile.logger_1.4.3-4build1_all.deb ... 156s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 156s Selecting previously unselected package r-cran-snow. 156s Preparing to unpack .../244-r-cran-snow_1%3a0.4.4-2_all.deb ... 156s Unpacking r-cran-snow (1:0.4.4-2) ... 156s Selecting previously unselected package r-cran-codetools. 156s Preparing to unpack .../245-r-cran-codetools_0.2-19-1_all.deb ... 156s Unpacking r-cran-codetools (0.2-19-1) ... 156s Selecting previously unselected package r-cran-bh. 156s Preparing to unpack .../246-r-cran-bh_1.84.0-1_all.deb ... 156s Unpacking r-cran-bh (1.84.0-1) ... 156s Selecting previously unselected package r-bioc-biocparallel. 156s Preparing to unpack .../247-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 156s Unpacking r-bioc-biocparallel (1.36.0-1) ... 156s Selecting previously unselected package r-cran-bookdown. 156s Preparing to unpack .../248-r-cran-bookdown_0.37+dfsg-1_all.deb ... 156s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 156s Selecting previously unselected package tex-common. 156s Preparing to unpack .../249-tex-common_6.18_all.deb ... 156s Unpacking tex-common (6.18) ... 156s Selecting previously unselected package t1utils. 156s Preparing to unpack .../250-t1utils_1.41-4build2_s390x.deb ... 156s Unpacking t1utils (1.41-4build2) ... 156s Selecting previously unselected package texlive-binaries. 156s Preparing to unpack .../251-texlive-binaries_2023.20230311.66589-9_s390x.deb ... 156s Unpacking texlive-binaries (2023.20230311.66589-9) ... 156s Selecting previously unselected package texlive-base. 156s Preparing to unpack .../252-texlive-base_2023.20240207-1_all.deb ... 156s Unpacking texlive-base (2023.20240207-1) ... 158s Selecting previously unselected package texlive-latex-base. 158s Preparing to unpack .../253-texlive-latex-base_2023.20240207-1_all.deb ... 158s Unpacking texlive-latex-base (2023.20240207-1) ... 158s Selecting previously unselected package texlive-bibtex-extra. 158s Preparing to unpack .../254-texlive-bibtex-extra_2023.20240207-1_all.deb ... 158s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 160s Selecting previously unselected package r-bioc-biocstyle. 160s Preparing to unpack .../255-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 160s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 160s Selecting previously unselected package r-cran-xml. 160s Preparing to unpack .../256-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 160s Unpacking r-cran-xml (3.99-0.16.1-1) ... 161s Selecting previously unselected package r-cran-hms. 161s Preparing to unpack .../257-r-cran-hms_1.1.3-1_all.deb ... 161s Unpacking r-cran-hms (1.1.3-1) ... 161s Selecting previously unselected package r-cran-prettyunits. 161s Preparing to unpack .../258-r-cran-prettyunits_1.2.0-1_all.deb ... 161s Unpacking r-cran-prettyunits (1.2.0-1) ... 161s Selecting previously unselected package r-cran-progress. 161s Preparing to unpack .../259-r-cran-progress_1.2.3-1_all.deb ... 161s Unpacking r-cran-progress (1.2.3-1) ... 161s Selecting previously unselected package r-cran-xml2. 161s Preparing to unpack .../260-r-cran-xml2_1.3.6-1_s390x.deb ... 161s Unpacking r-cran-xml2 (1.3.6-1) ... 161s Selecting previously unselected package r-bioc-biomart. 161s Preparing to unpack .../261-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 161s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 161s Selecting previously unselected package r-bioc-genomicranges. 161s Preparing to unpack .../262-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 161s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 161s Selecting previously unselected package r-bioc-rhtslib. 161s Preparing to unpack .../263-r-bioc-rhtslib_2.4.1+dfsg-3build1_s390x.deb ... 161s Unpacking r-bioc-rhtslib (2.4.1+dfsg-3build1) ... 161s Selecting previously unselected package r-bioc-rsamtools. 161s Preparing to unpack .../264-r-bioc-rsamtools_2.18.0+dfsg-1_s390x.deb ... 161s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 161s Selecting previously unselected package r-cran-matrixstats. 161s Preparing to unpack .../265-r-cran-matrixstats_1.2.0-1_s390x.deb ... 161s Unpacking r-cran-matrixstats (1.2.0-1) ... 161s Selecting previously unselected package r-bioc-matrixgenerics. 161s Preparing to unpack .../266-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 161s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 161s Selecting previously unselected package r-cran-lattice. 161s Preparing to unpack .../267-r-cran-lattice_0.22-5-1_s390x.deb ... 161s Unpacking r-cran-lattice (0.22-5-1) ... 161s Selecting previously unselected package r-cran-matrix. 161s Preparing to unpack .../268-r-cran-matrix_1.6-5-1_s390x.deb ... 161s Unpacking r-cran-matrix (1.6-5-1) ... 161s Selecting previously unselected package r-cran-abind. 161s Preparing to unpack .../269-r-cran-abind_1.4-5-2_all.deb ... 161s Unpacking r-cran-abind (1.4-5-2) ... 161s Selecting previously unselected package r-bioc-s4arrays. 161s Preparing to unpack .../270-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 161s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 161s Selecting previously unselected package r-bioc-sparsearray. 161s Preparing to unpack .../271-r-bioc-sparsearray_1.2.4+dfsg-1_s390x.deb ... 161s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 161s Selecting previously unselected package r-bioc-delayedarray. 161s Preparing to unpack .../272-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ... 161s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 161s Selecting previously unselected package r-bioc-summarizedexperiment. 161s Preparing to unpack .../273-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 161s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 161s Selecting previously unselected package r-bioc-genomicalignments. 161s Preparing to unpack .../274-r-bioc-genomicalignments_1.38.2-1_s390x.deb ... 161s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 161s Selecting previously unselected package r-cran-rjson. 161s Preparing to unpack .../275-r-cran-rjson_0.2.21-1_s390x.deb ... 161s Unpacking r-cran-rjson (0.2.21-1) ... 161s Selecting previously unselected package r-cran-restfulr. 161s Preparing to unpack .../276-r-cran-restfulr_0.0.15-1_s390x.deb ... 161s Unpacking r-cran-restfulr (0.0.15-1) ... 161s Selecting previously unselected package r-bioc-rtracklayer. 161s Preparing to unpack .../277-r-bioc-rtracklayer_1.62.0-1_s390x.deb ... 161s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 161s Selecting previously unselected package r-bioc-bsgenome. 161s Preparing to unpack .../278-r-bioc-bsgenome_1.70.2-1_all.deb ... 161s Unpacking r-bioc-bsgenome (1.70.2-1) ... 161s Selecting previously unselected package r-bioc-genomicfeatures. 161s Preparing to unpack .../279-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 161s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 161s Selecting previously unselected package r-cran-survival. 161s Preparing to unpack .../280-r-cran-survival_3.5-8-1_s390x.deb ... 161s Unpacking r-cran-survival (3.5-8-1) ... 161s Selecting previously unselected package r-bioc-snpstats. 161s Preparing to unpack .../281-r-bioc-snpstats_1.52.0+dfsg-1_s390x.deb ... 161s Unpacking r-bioc-snpstats (1.52.0+dfsg-1) ... 162s Selecting previously unselected package r-bioc-variantannotation. 162s Preparing to unpack .../282-r-bioc-variantannotation_1.48.1-1_s390x.deb ... 162s Unpacking r-bioc-variantannotation (1.48.1-1) ... 162s Selecting previously unselected package r-cran-colorspace. 162s Preparing to unpack .../283-r-cran-colorspace_2.1-0+dfsg-1_s390x.deb ... 162s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 162s Selecting previously unselected package r-cran-farver. 162s Preparing to unpack .../284-r-cran-farver_2.1.1-1_s390x.deb ... 162s Unpacking r-cran-farver (2.1.1-1) ... 162s Selecting previously unselected package r-cran-gtable. 162s Preparing to unpack .../285-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 162s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 162s Selecting previously unselected package r-cran-isoband. 162s Preparing to unpack .../286-r-cran-isoband_0.2.7-1_s390x.deb ... 162s Unpacking r-cran-isoband (0.2.7-1) ... 162s Selecting previously unselected package r-cran-mass. 162s Preparing to unpack .../287-r-cran-mass_7.3-60.0.1-1_s390x.deb ... 162s Unpacking r-cran-mass (7.3-60.0.1-1) ... 162s Selecting previously unselected package r-cran-nlme. 162s Preparing to unpack .../288-r-cran-nlme_3.1.164-1_s390x.deb ... 162s Unpacking r-cran-nlme (3.1.164-1) ... 162s Selecting previously unselected package r-cran-mgcv. 162s Preparing to unpack .../289-r-cran-mgcv_1.9-1-1_s390x.deb ... 162s Unpacking r-cran-mgcv (1.9-1-1) ... 162s Selecting previously unselected package r-cran-labeling. 162s Preparing to unpack .../290-r-cran-labeling_0.4.3-1_all.deb ... 162s Unpacking r-cran-labeling (0.4.3-1) ... 162s Selecting previously unselected package r-cran-munsell. 162s Preparing to unpack .../291-r-cran-munsell_0.5.0-2build1_all.deb ... 162s Unpacking r-cran-munsell (0.5.0-2build1) ... 162s Selecting previously unselected package r-cran-rcolorbrewer. 162s Preparing to unpack .../292-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 162s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 162s Selecting previously unselected package r-cran-viridislite. 162s Preparing to unpack .../293-r-cran-viridislite_0.4.2-2_all.deb ... 162s Unpacking r-cran-viridislite (0.4.2-2) ... 162s Selecting previously unselected package r-cran-scales. 162s Preparing to unpack .../294-r-cran-scales_1.3.0-1_all.deb ... 162s Unpacking r-cran-scales (1.3.0-1) ... 162s Selecting previously unselected package r-cran-ggplot2. 162s Preparing to unpack .../295-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 162s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 162s Selecting previously unselected package r-cran-runit. 162s Preparing to unpack .../296-r-cran-runit_0.4.32-3_all.deb ... 162s Unpacking r-cran-runit (0.4.32-3) ... 162s Selecting previously unselected package autopkgtest-satdep. 162s Preparing to unpack .../297-1-autopkgtest-satdep.deb ... 162s Unpacking autopkgtest-satdep (0) ... 162s Setting up libjs-json (0~20221030+~1.0.8-1) ... 162s Setting up javascript-common (11+nmu1) ... 162s Setting up libgraphite2-3:s390x (1.3.14-2) ... 162s Setting up libpixman-1-0:s390x (0.42.2-1) ... 162s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 162s Setting up libpaper1:s390x (1.1.29) ... 162s 162s Creating config file /etc/papersize with new version 162s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 162s Setting up libxpm4:s390x (1:3.5.17-1) ... 162s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 162s Setting up libxi6:s390x (2:1.8.1-1) ... 162s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 162s Setting up libdatrie1:s390x (0.2.13-3) ... 162s Setting up libjs-popper.js (1.16.1+ds-6) ... 162s Setting up libxcb-render0:s390x (1.15-1) ... 162s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 162s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 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r-cran-r6 (2.5.1-1) ... 165s Setting up r-cran-pkgkitten (0.2.3-1) ... 165s Setting up texlive-base (2023.20240207-1) ... 166s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 166s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 166s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 166s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 167s Setting up r-cran-magrittr (2.0.3-1) ... 167s Setting up r-cran-rappdirs (0.3.3-1) ... 167s Setting up r-cran-filelock (1.0.3-1) ... 167s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 167s Setting up r-cran-littler (0.3.19-1) ... 167s Setting up r-cran-bh (1.84.0-1) ... 167s Setting up r-cran-fs (1.6.3+dfsg-1) ... 167s Setting up r-cran-rcpp (1.0.12-1) ... 167s Setting up r-cran-curl (5.2.0+dfsg-1) ... 167s Setting up r-cran-codetools (0.2-19-1) ... 167s Setting up r-bioc-biocgenerics (0.48.1-2) ... 167s Setting up r-cran-rlang (1.1.3-1) ... 167s Setting up r-cran-matrixstats (1.2.0-1) ... 167s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 167s Setting up r-cran-xfun (0.41+dfsg-1) ... 167s Setting up r-cran-sys (3.4.2-1) ... 167s Setting up r-cran-plogr (0.2.0-3build1) ... 167s Setting up r-cran-withr (2.5.0-1) ... 167s Setting up r-cran-mime (0.12-1) ... 167s Setting up r-cran-generics (0.1.3-1) ... 167s Setting up r-cran-base64enc (0.1-3-3) ... 167s Setting up r-cran-abind (1.4-5-2) ... 167s Setting up r-cran-digest (0.6.34-1) ... 167s Setting up r-cran-yaml (2.3.8-1) ... 167s Setting up r-cran-lambda.r (1.2.4-2build1) ... 167s Setting up r-cran-evaluate (0.23-1) ... 167s Setting up r-cran-dbi (1.2.2-1) ... 167s Setting up r-cran-highr (0.10+dfsg-1) ... 167s Setting up r-cran-prettyunits (1.2.0-1) ... 167s Setting up r-cran-fansi (1.0.5-1) ... 167s Setting up r-cran-mass (7.3-60.0.1-1) ... 167s Setting up r-cran-snow (1:0.4.4-2) ... 167s Setting up r-cran-glue (1.7.0-1) ... 167s Setting up r-cran-bit (4.0.5-1) ... 167s Setting up r-cran-xtable (1:1.8-4-2) ... 167s Setting up r-cran-cli (3.6.2-1) ... 167s Setting up gfortran (4:13.2.0-7ubuntu1) ... 167s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 167s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 167s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 167s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 167s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 167s Setting up r-cran-bitops (1.0-7-1) ... 167s Setting up r-bioc-biocversion (3.18.1-1) ... 167s Setting up r-cran-bit64 (4.0.5-1) ... 167s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 167s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 167s Setting up r-cran-askpass (1.2.0-1) ... 167s Setting up r-cran-fastmap (1.1.1-1) ... 167s Setting up r-cran-png (0.1-8-1) ... 167s Setting up r-bioc-biobase (2.62.0-1) ... 167s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 167s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 167s Setting up r-cran-utf8 (1.2.4-1) ... 167s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 167s Setting up r-cran-stringi (1.8.3-1) ... 167s Setting up texlive-latex-base (2023.20240207-1) ... 167s Setting up r-cran-cpp11 (0.4.7-1) ... 167s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 167s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 167s Setting up r-cran-isoband (0.2.7-1) ... 167s Setting up r-cran-runit (0.4.32-3) ... 167s Setting up r-cran-futile.logger (1.4.3-4build1) ... 167s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 167s Setting up r-cran-later (1.3.2+dfsg-1) ... 167s Setting up r-cran-matrix (1.6-5-1) ... 167s Setting up r-cran-tinytex (0.49-1) ... 167s Setting up r-cran-knitr (1.45+dfsg-1) ... 167s Setting up r-cran-mgcv (1.9-1-1) ... 167s Setting up r-cran-cachem (1.0.8-1) ... 167s Setting up r-bioc-iranges (2.36.0-1) ... 167s Setting up r-cran-rjson (0.2.21-1) ... 167s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 167s Setting up r-cran-restfulr (0.0.15-1) ... 167s Setting up r-cran-vctrs (0.6.5-1) ... 167s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 167s Setting up r-cran-ellipsis (0.3.2-2) ... 167s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 167s Setting up r-base-dev (4.3.2-1build1) ... 167s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 167s Setting up r-cran-stringr (1.5.1-1) ... 167s Setting up r-bioc-biocparallel (1.36.0-1) ... 167s Setting up r-bioc-rhtslib (2.4.1+dfsg-3build1) ... 167s Setting up r-cran-xml2 (1.3.6-1) ... 167s Setting up r-cran-munsell (0.5.0-2build1) ... 167s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 167s Setting up r-cran-survival (3.5-8-1) ... 167s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 167s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 167s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ... 167s Setting up texlive-bibtex-extra (2023.20240207-1) ... 167s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 167s Setting up r-cran-httr (1.4.7+dfsg-1) ... 167s Setting up r-cran-hms (1.1.3-1) ... 167s Setting up r-cran-scales (1.3.0-1) ... 167s Setting up r-cran-memoise (2.0.1-1) ... 167s Setting up r-cran-promises (1.2.1+dfsg-1) ... 167s Setting up r-cran-purrr (1.0.2-1) ... 167s Setting up r-cran-blob (1.2.4-1) ... 167s Setting up r-cran-htmltools (0.5.7-1) ... 167s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 167s Setting up r-bioc-xvector (0.42.0-1) ... 167s Setting up r-cran-sass (0.4.8+dfsg-1) ... 167s Setting up r-cran-dplyr (1.1.4-1) ... 167s Setting up r-cran-rsqlite (2.3.4-1) ... 167s Setting up r-cran-progress (1.2.3-1) ... 167s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 167s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 167s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 167s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 167s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 167s Setting up r-cran-fontawesome (0.5.2-1) ... 167s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 167s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 167s Setting up r-cran-tidyr (1.3.1-1) ... 167s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 167s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 167s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 167s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 167s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 167s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 167s Setting up r-bioc-annotationdbi (1.64.1-1) ... 167s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 167s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 167s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 167s Setting up r-bioc-genomicalignments (1.38.2-1) ... 167s Setting up r-cran-bookdown (0.37+dfsg-1) ... 167s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 167s Setting up r-bioc-rtracklayer (1.62.0-1) ... 167s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 167s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 167s Setting up r-bioc-bsgenome (1.70.2-1) ... 167s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 167s Setting up r-cran-dt (0.31+dfsg-1) ... 167s Setting up r-bioc-variantannotation (1.48.1-1) ... 167s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 167s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 167s Setting up autopkgtest-satdep (0) ... 167s Processing triggers for man-db (2.12.0-3) ... 168s Processing triggers for install-info (7.1-3) ... 168s Processing triggers for libc-bin (2.39-0ubuntu2) ... 168s Processing triggers for tex-common (6.18) ... 168s Running updmap-sys. This may take some time... done. 168s Running mktexlsr /var/lib/texmf ... done. 168s Building format(s) --all. 215s This may take some time... done. 223s (Reading database ... 103761 files and directories currently installed.) 223s Removing autopkgtest-satdep (0) ... 224s autopkgtest [18:29:39]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 224s autopkgtest [18:29:39]: test pkg-r-autopkgtest: [----------------------- 224s Test: Try to load the R library VariantAnnotation 224s 224s R version 4.3.2 (2023-10-31) -- "Eye Holes" 224s Copyright (C) 2023 The R Foundation for Statistical Computing 224s Platform: s390x-ibm-linux-gnu (64-bit) 224s 224s R is free software and comes with ABSOLUTELY NO WARRANTY. 224s You are welcome to redistribute it under certain conditions. 224s Type 'license()' or 'licence()' for distribution details. 224s 224s R is a collaborative project with many contributors. 224s Type 'contributors()' for more information and 224s 'citation()' on how to cite R or R packages in publications. 224s 224s Type 'demo()' for some demos, 'help()' for on-line help, or 224s 'help.start()' for an HTML browser interface to help. 224s Type 'q()' to quit R. 224s 224s > library('VariantAnnotation') 224s Loading required package: BiocGenerics 224s 224s Attaching package: ‘BiocGenerics’ 224s 224s The following objects are masked from ‘package:stats’: 224s 224s IQR, mad, sd, var, xtabs 224s 224s The following objects are masked from ‘package:base’: 224s 224s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 224s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 224s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 224s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 224s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 224s table, tapply, union, unique, unsplit, which.max, which.min 224s 224s Loading required package: MatrixGenerics 224s Loading required package: matrixStats 224s 224s Attaching package: ‘MatrixGenerics’ 224s 224s The following objects are masked from ‘package:matrixStats’: 224s 224s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 224s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 224s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 224s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 224s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 224s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 224s colWeightedMeans, colWeightedMedians, colWeightedSds, 224s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 224s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 224s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 224s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 224s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 224s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 224s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 224s rowWeightedSds, rowWeightedVars 224s 224s Loading required package: GenomeInfoDb 224s Loading required package: S4Vectors 224s Loading required package: stats4 225s 225s Attaching package: ‘S4Vectors’ 225s 225s The following object is masked from ‘package:utils’: 225s 225s findMatches 225s 225s The following objects are masked from ‘package:base’: 225s 225s expand.grid, I, unname 225s 225s Loading required package: IRanges 226s Loading required package: GenomicRanges 227s Loading required package: SummarizedExperiment 227s Loading required package: Biobase 227s Welcome to Bioconductor 227s 227s Vignettes contain introductory material; view with 227s 'browseVignettes()'. To cite Bioconductor, see 227s 'citation("Biobase")', and for packages 'citation("pkgname")'. 227s 227s 227s Attaching package: ‘Biobase’ 227s 227s The following object is masked from ‘package:MatrixGenerics’: 227s 227s rowMedians 227s 227s The following objects are masked from ‘package:matrixStats’: 227s 227s anyMissing, rowMedians 227s 230s Loading required package: Rsamtools 230s Loading required package: Biostrings 230s Loading required package: XVector 231s 231s Attaching package: ‘Biostrings’ 231s 231s The following object is masked from ‘package:base’: 231s 231s strsplit 231s 237s 237s Attaching package: ‘VariantAnnotation’ 237s 237s > 237s > 237s The following object is masked from ‘package:base’: 237s 237s tabulate 237s 237s Other tests are currently unsupported! 237s They will be progressively added. 238s autopkgtest [18:29:53]: test pkg-r-autopkgtest: -----------------------] 238s pkg-r-autopkgtest PASS 238s autopkgtest [18:29:53]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 238s autopkgtest [18:29:53]: @@@@@@@@@@@@@@@@@@@@ summary 238s pkg-r-autopkgtest PASS 249s Creating nova instance adt-noble-s390x-r-bioc-variantannotation-20240316-182555-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...