0s autopkgtest [18:54:53]: starting date and time: 2024-03-16 18:54:53+0000 0s autopkgtest [18:54:53]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:54:53]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.c4udlwhr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-shortread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-14.secgroup --name adt-noble-s390x-r-bioc-shortread-20240316-185453-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 150s autopkgtest [18:57:23]: testbed dpkg architecture: s390x 150s autopkgtest [18:57:23]: testbed apt version: 2.7.12 150s autopkgtest [18:57:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 151s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 151s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 152s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 152s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 152s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 152s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB] 152s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 152s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 152s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 152s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3752 kB] 152s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 152s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB] 152s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 154s Fetched 8760 kB in 2s (3969 kB/s) 154s Reading package lists... 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 156s Calculating upgrade... 157s The following packages will be REMOVED: 157s libssl3 157s The following NEW packages will be installed: 157s libssl3t64 157s The following packages have been kept back: 157s curl 157s The following packages will be upgraded: 157s openssl ubuntu-minimal ubuntu-standard 157s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 157s Need to get 2680 kB of archives. 157s After this operation, 23.6 kB of additional disk space will be used. 157s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 157s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 157s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB] 157s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB] 158s Fetched 2680 kB in 1s (3927 kB/s) 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 158s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 158s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 158s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 158s wget depends on libssl3 (>= 3.0.0). 158s tnftp depends on libssl3 (>= 3.0.0). 158s tcpdump depends on libssl3 (>= 3.0.0). 158s systemd-resolved depends on libssl3 (>= 3.0.0). 158s systemd depends on libssl3 (>= 3.0.0). 158s sudo depends on libssl3 (>= 3.0.0). 158s s390-tools depends on libssl3 (>= 3.0.0). 158s rsync depends on libssl3 (>= 3.0.0). 158s python3-cryptography depends on libssl3 (>= 3.0.0). 158s openssh-server depends on libssl3 (>= 3.0.10). 158s openssh-client depends on libssl3 (>= 3.0.10). 158s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 158s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 158s libssh-4:s390x depends on libssl3 (>= 3.0.0). 158s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 158s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 158s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 158s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 158s libnvme1 depends on libssl3 (>= 3.0.0). 158s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 158s libkmod2:s390x depends on libssl3 (>= 3.0.0). 158s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 158s libcurl4:s390x depends on libssl3 (>= 3.0.0). 158s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 158s kmod depends on libssl3 (>= 3.0.0). 158s dhcpcd-base depends on libssl3 (>= 3.0.0). 158s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 158s 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 158s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 158s Selecting previously unselected package libssl3t64:s390x. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 158s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 158s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 158s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ... 158s Unpacking ubuntu-minimal (1.536) over (1.535) ... 158s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ... 158s Unpacking ubuntu-standard (1.536) over (1.535) ... 158s Setting up ubuntu-minimal (1.536) ... 158s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 158s Setting up ubuntu-standard (1.536) ... 158s Setting up openssl (3.0.13-0ubuntu1) ... 158s Processing triggers for man-db (2.12.0-3) ... 158s Processing triggers for libc-bin (2.39-0ubuntu2) ... 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 159s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 159s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 159s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 159s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 160s Reading package lists... 160s Reading package lists... 161s Building dependency tree... 161s Reading state information... 161s Calculating upgrade... 161s The following packages have been kept back: 161s curl 161s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 161s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 164s autopkgtest [18:57:37]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 164s autopkgtest [18:57:37]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-shortread 166s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-shortread 1.60.0-2 (dsc) [2387 B] 166s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-shortread 1.60.0-2 (tar) [5223 kB] 166s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-shortread 1.60.0-2 (diff) [5876 B] 166s gpgv: Signature made Mon Dec 18 09:06:56 2023 UTC 166s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 166s gpgv: issuer "tille@debian.org" 166s gpgv: Can't check signature: No public key 166s dpkg-source: warning: cannot verify inline signature for ./r-bioc-shortread_1.60.0-2.dsc: no acceptable signature found 166s autopkgtest [18:57:39]: testing package r-bioc-shortread version 1.60.0-2 166s autopkgtest [18:57:39]: build not needed 168s autopkgtest [18:57:41]: test pkg-r-autopkgtest: preparing testbed 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 170s Starting pkgProblemResolver with broken count: 0 170s Starting 2 pkgProblemResolver with broken count: 0 170s Done 170s The following additional packages will be installed: 170s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl 170s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 170s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 170s g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 170s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 170s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 170s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 170s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 170s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 170s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 170s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl 170s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 170s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 170s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 170s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 170s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 170s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 170s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 170s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 170s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 170s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 170s libpng-dev libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 170s libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 170s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 170s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 170s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 170s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 170s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 170s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 170s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 170s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 170s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 170s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 170s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 170s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 170s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 170s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 170s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 170s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 170s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 170s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 170s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 170s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 170s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 170s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 170s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 170s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 170s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 170s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 170s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 170s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 170s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 170s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 170s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 170s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 170s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 170s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 170s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 170s Suggested packages: 170s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 170s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 170s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 170s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 170s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 170s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 170s libboost-context1.83-dev libboost-contract1.83-dev 170s libboost-coroutine1.83-dev libboost-date-time1.83-dev 170s libboost-exception1.83-dev libboost-fiber1.83-dev 170s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 170s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 170s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 170s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 170s libboost-numpy1.83-dev libboost-program-options1.83-dev 170s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 170s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 170s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 170s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 170s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 170s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 170s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 170s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 170s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 170s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 170s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 170s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 170s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 170s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 170s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 170s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 170s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 170s r-cran-r.utils r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter 170s r-cran-markdown r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq 170s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff 170s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-polyclip r-cran-lubridate 170s r-cran-sp r-cran-ggplot2 r-cran-gridextra r-cran-scatterplot3d r-cran-getopt 170s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 170s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 170s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 170s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 170s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 170s texlive-latex-base-doc wp2latex 170s Recommended packages: 170s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 170s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 170s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 170s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 170s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 170s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 170s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 170s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 170s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo 170s r-cran-cairo r-cran-markdown r-cran-ragg r-cran-readr r-cran-r.rsp r-cran-sf 170s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 170s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 170s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 170s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 170s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 170s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 170s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 170s The following packages will be REMOVED: 170s libcurl4 libpsl5 170s The following NEW packages will be installed: 170s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 170s cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config 170s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 170s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 170s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 170s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 170s gfortran-s390x-linux-gnu icu-devtools javascript-common libasan8 libatomic1 170s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 170s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 170s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev 170s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 170s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 170s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 170s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 170s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 170s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 170s libjs-popper.js libjs-prettify libjs-sifter.js 170s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 170s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 170s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 170s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 170s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 170s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 170s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 170s libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 170s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 170s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 170s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 170s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 170s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 170s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 170s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 170s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 170s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 170s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 170s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 170s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 170s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 170s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 170s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 170s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 170s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 170s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 170s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 170s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 170s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 170s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 170s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 170s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 170s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 170s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 170s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 170s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 170s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 170s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 170s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 170s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 170s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 170s The following packages will be upgraded: 170s curl 170s 1 upgraded, 284 newly installed, 2 to remove and 0 not upgraded. 170s Need to get 438 MB/438 MB of archives. 170s After this operation, 1410 MB of additional disk space will be used. 170s Get:1 /tmp/autopkgtest.5bYUtG/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [760 B] 170s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB] 171s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB] 171s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB] 171s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 171s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 171s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 171s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 171s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 171s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 171s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 171s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 171s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 171s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 171s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 171s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 171s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 171s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 171s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 171s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 171s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 171s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 171s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 171s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 171s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 172s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 172s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 172s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 172s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 172s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 172s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 172s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 172s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 172s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 172s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 172s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 172s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 172s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 172s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 172s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 172s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 172s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 172s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 172s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 172s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 172s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 173s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 173s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 173s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 173s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 173s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 173s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 173s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 173s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 173s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 173s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 173s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 173s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 173s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 173s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 173s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 173s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 173s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 173s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 173s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 173s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 173s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 173s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 173s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 173s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 173s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 173s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 173s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 174s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 174s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 174s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 174s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 174s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 174s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 174s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 174s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 174s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 174s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 174s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 174s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 174s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 174s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 174s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 174s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 174s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 174s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 174s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 174s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 174s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9 [66.4 kB] 174s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 174s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 174s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 174s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 174s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 174s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 174s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 174s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 174s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 174s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 174s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 174s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 175s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 175s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 175s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 175s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 175s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 176s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 176s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 176s Get:114 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9 [41.6 kB] 176s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 176s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 176s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 176s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9 [65.0 kB] 176s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 176s Get:120 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 176s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9 [132 kB] 176s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 176s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 176s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 176s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 176s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 176s Get:127 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 176s Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 176s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3 [49.3 kB] 176s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 176s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1 [186 kB] 176s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 176s Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13 s390x 0.13.72+dfsg.1-1.1 [26.1 kB] 176s Get:134 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 176s Get:135 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 177s Get:136 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 177s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 178s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 178s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x littler all 0.3.19-1 [2472 B] 178s Get:140 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 178s Get:141 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 179s Get:142 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 179s Get:143 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 179s Get:144 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 180s Get:145 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 180s Get:146 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 180s Get:147 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 180s Get:148 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 180s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 180s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 180s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 180s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 180s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 180s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 180s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 180s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 180s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 181s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 181s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 181s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 181s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 181s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 181s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 181s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 181s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 181s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 181s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 181s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 181s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 181s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 181s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB] 181s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 181s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 181s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 181s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 181s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB] 181s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 181s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 181s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB] 181s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 181s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 181s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 181s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1 [794 kB] 181s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 182s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 182s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 182s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 182s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 182s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 182s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 182s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 182s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 182s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 182s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 182s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 182s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 182s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 182s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 183s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 183s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 183s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 183s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 183s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 183s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 183s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 183s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 184s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 184s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 184s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 184s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 184s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 184s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 184s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 184s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 185s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 185s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 185s Get:217 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 185s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 185s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 185s Get:220 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 185s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 185s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 185s Get:223 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 186s Get:224 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 186s Get:225 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 186s Get:226 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 186s Get:227 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 186s Get:228 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 186s Get:229 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 187s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 187s Get:231 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 187s Get:232 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 187s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 187s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 187s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 187s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 187s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1 [519 kB] 187s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 187s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 187s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 187s Get:241 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 187s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 187s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 187s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 187s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 187s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 187s Get:247 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 187s Get:248 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9 [9353 kB] 188s Get:249 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 189s Get:250 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 189s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 192s Get:252 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 192s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 192s Get:254 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 192s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 192s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 192s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 192s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 192s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 192s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 192s Get:261 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 192s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 193s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 193s Get:264 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 193s Get:265 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 193s Get:266 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 193s Get:267 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 193s Get:268 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 193s Get:269 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-1 [1410 kB] 193s Get:270 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1build1 [3700 kB] 193s Get:271 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 193s Get:272 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 193s Get:273 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 193s Get:274 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 193s Get:275 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 193s Get:276 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hwriter all 1.3.2.1-1 [106 kB] 193s Get:277 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jpeg s390x 0.1-10-1 [31.3 kB] 193s Get:278 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 193s Get:279 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-deldir s390x 2.0-4-1 [271 kB] 193s Get:280 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcppeigen s390x 0.3.3.9.4-1 [1187 kB] 194s Get:281 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-interp s390x 1.1-6-1 [1465 kB] 194s Get:282 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 194s Get:283 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-latticeextra all 0.6-30-1 [2198 kB] 194s Get:284 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-shortread s390x 1.60.0-2 [5204 kB] 194s Get:285 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-runit all 0.4.32-3 [283 kB] 195s Preconfiguring packages ... 195s Fetched 438 MB in 24s (18.3 MB/s) 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 195s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ... 195s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 195s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested: 195s wget depends on libpsl5 (>= 0.16.0). 195s libcurl4:s390x depends on libpsl5 (>= 0.16.0). 195s libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0). 195s 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 195s Removing libpsl5:s390x (0.21.2-1build1) ... 195s Selecting previously unselected package libpsl5t64:s390x. 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52168 files and directories currently installed.) 195s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ... 195s Unpacking libpsl5t64:s390x (0.21.2-1.1) ... 195s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested: 195s s390-tools depends on libcurl4 (>= 7.16.2). 195s 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52174 files and directories currently installed.) 195s Removing libcurl4:s390x (8.5.0-2ubuntu2) ... 195s Selecting previously unselected package libcurl4t64:s390x. 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52169 files and directories currently installed.) 195s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ... 195s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ... 195s Selecting previously unselected package libc-dev-bin. 195s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 195s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 195s Selecting previously unselected package linux-libc-dev:s390x. 195s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ... 195s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 195s Selecting previously unselected package libcrypt-dev:s390x. 195s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 195s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 195s Selecting previously unselected package libtirpc-dev:s390x. 195s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 195s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 195s Selecting previously unselected package libnsl-dev:s390x. 195s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ... 195s Unpacking libnsl-dev:s390x (1.3.0-3) ... 195s Selecting previously unselected package rpcsvc-proto. 195s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 195s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 195s Selecting previously unselected package libc6-dev:s390x. 195s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ... 195s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 195s Selecting previously unselected package libisl23:s390x. 195s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ... 195s Unpacking libisl23:s390x (0.26-3) ... 195s Selecting previously unselected package libmpc3:s390x. 195s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ... 195s Unpacking libmpc3:s390x (1.3.1-1) ... 195s Selecting previously unselected package cpp-13-s390x-linux-gnu. 195s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 195s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package cpp-13. 196s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 196s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package cpp-s390x-linux-gnu. 196s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 196s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 196s Selecting previously unselected package cpp. 196s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 196s Unpacking cpp (4:13.2.0-7ubuntu1) ... 196s Selecting previously unselected package libcc1-0:s390x. 196s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 196s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libgomp1:s390x. 196s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 196s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libitm1:s390x. 196s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ... 196s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libatomic1:s390x. 196s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 196s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libasan8:s390x. 196s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ... 196s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libubsan1:s390x. 196s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 196s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libgcc-13-dev:s390x. 196s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 196s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package gcc-13-s390x-linux-gnu. 196s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 196s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package gcc-13. 196s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 196s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package gcc-s390x-linux-gnu. 196s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 196s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 196s Selecting previously unselected package gcc. 196s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 196s Unpacking gcc (4:13.2.0-7ubuntu1) ... 196s Selecting previously unselected package libstdc++-13-dev:s390x. 196s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 196s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package g++-13-s390x-linux-gnu. 197s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 197s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package g++-13. 197s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ... 197s Unpacking g++-13 (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package g++-s390x-linux-gnu. 197s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 197s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 197s Selecting previously unselected package g++. 197s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 197s Unpacking g++ (4:13.2.0-7ubuntu1) ... 197s Selecting previously unselected package build-essential. 197s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ... 197s Unpacking build-essential (12.10ubuntu1) ... 197s Selecting previously unselected package dctrl-tools. 197s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ... 197s Unpacking dctrl-tools (2.24-3build2) ... 197s Selecting previously unselected package libfreetype6:s390x. 197s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 197s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 197s Selecting previously unselected package fonts-dejavu-mono. 197s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 197s Unpacking fonts-dejavu-mono (2.37-8) ... 197s Selecting previously unselected package fonts-dejavu-core. 197s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 197s Unpacking fonts-dejavu-core (2.37-8) ... 197s Selecting previously unselected package fontconfig-config. 197s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 197s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 197s Selecting previously unselected package libfontconfig1:s390x. 197s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 197s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 197s Selecting previously unselected package fontconfig. 197s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 197s Unpacking fontconfig (2.15.0-1ubuntu1) ... 197s Selecting previously unselected package fonts-font-awesome. 197s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 197s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 197s Selecting previously unselected package fonts-glyphicons-halflings. 197s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 197s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 197s Selecting previously unselected package fonts-lmodern. 197s Preparing to unpack .../040-fonts-lmodern_2.005-1_all.deb ... 197s Unpacking fonts-lmodern (2.005-1) ... 197s Selecting previously unselected package fonts-mathjax. 197s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 197s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 197s Selecting previously unselected package libgfortran5:s390x. 197s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 197s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libgfortran-13-dev:s390x. 197s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 197s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 198s Preparing to unpack .../044-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 198s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package gfortran-13. 198s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 198s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package gfortran-s390x-linux-gnu. 198s Preparing to unpack .../046-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 198s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package gfortran. 198s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 198s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package icu-devtools. 198s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_s390x.deb ... 198s Unpacking icu-devtools (74.2-1ubuntu1) ... 198s Selecting previously unselected package javascript-common. 198s Preparing to unpack .../049-javascript-common_11+nmu1_all.deb ... 198s Unpacking javascript-common (11+nmu1) ... 198s Selecting previously unselected package libio-string-perl. 198s Preparing to unpack .../050-libio-string-perl_1.08-4_all.deb ... 198s Unpacking libio-string-perl (1.08-4) ... 198s Selecting previously unselected package liblatex-tounicode-perl. 198s Preparing to unpack .../051-liblatex-tounicode-perl_0.54-2_all.deb ... 198s Unpacking liblatex-tounicode-perl (0.54-2) ... 198s Selecting previously unselected package libbibtex-parser-perl. 198s Preparing to unpack .../052-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 198s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 198s Selecting previously unselected package libblas3:s390x. 198s Preparing to unpack .../053-libblas3_3.12.0-3_s390x.deb ... 198s Unpacking libblas3:s390x (3.12.0-3) ... 198s Selecting previously unselected package libblas-dev:s390x. 198s Preparing to unpack .../054-libblas-dev_3.12.0-3_s390x.deb ... 198s Unpacking libblas-dev:s390x (3.12.0-3) ... 198s Selecting previously unselected package libboost1.83-dev:s390x. 198s Preparing to unpack .../055-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 198s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 200s Selecting previously unselected package libboost-dev:s390x. 200s Preparing to unpack .../056-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 200s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 200s Selecting previously unselected package libbz2-dev:s390x. 200s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 200s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 200s Selecting previously unselected package libpixman-1-0:s390x. 200s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_s390x.deb ... 200s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 200s Selecting previously unselected package libxcb-render0:s390x. 200s Preparing to unpack .../059-libxcb-render0_1.15-1_s390x.deb ... 200s Unpacking libxcb-render0:s390x (1.15-1) ... 200s Selecting previously unselected package libxcb-shm0:s390x. 200s Preparing to unpack .../060-libxcb-shm0_1.15-1_s390x.deb ... 200s Unpacking libxcb-shm0:s390x (1.15-1) ... 200s Selecting previously unselected package libxrender1:s390x. 200s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 200s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 200s Selecting previously unselected package libcairo2:s390x. 200s Preparing to unpack .../062-libcairo2_1.18.0-1_s390x.deb ... 200s Unpacking libcairo2:s390x (1.18.0-1) ... 200s Selecting previously unselected package libdatrie1:s390x. 200s Preparing to unpack .../063-libdatrie1_0.2.13-3_s390x.deb ... 200s Unpacking libdatrie1:s390x (0.2.13-3) ... 200s Selecting previously unselected package libdeflate0:s390x. 200s Preparing to unpack .../064-libdeflate0_1.19-1_s390x.deb ... 200s Unpacking libdeflate0:s390x (1.19-1) ... 200s Selecting previously unselected package libgraphite2-3:s390x. 200s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_s390x.deb ... 200s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 200s Selecting previously unselected package libharfbuzz0b:s390x. 200s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_s390x.deb ... 200s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 200s Selecting previously unselected package x11-common. 200s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 200s Unpacking x11-common (1:7.7+23ubuntu2) ... 200s Selecting previously unselected package libice6:s390x. 200s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_s390x.deb ... 200s Unpacking libice6:s390x (2:1.0.10-1build2) ... 200s Selecting previously unselected package libicu-dev:s390x. 200s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_s390x.deb ... 200s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 201s Selecting previously unselected package libjpeg-turbo8:s390x. 201s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 201s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 201s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 201s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 201s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 201s Selecting previously unselected package libjpeg8:s390x. 201s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_s390x.deb ... 201s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 201s Selecting previously unselected package libjpeg8-dev:s390x. 201s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 201s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 201s Selecting previously unselected package libjpeg-dev:s390x. 201s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 201s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 201s Selecting previously unselected package libjs-bootstrap. 201s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 201s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 201s Selecting previously unselected package libjs-popper.js. 201s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6_all.deb ... 201s Unpacking libjs-popper.js (1.16.1+ds-6) ... 201s Selecting previously unselected package libjs-bootstrap4. 201s Preparing to unpack .../077-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 201s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 201s Selecting previously unselected package libjs-d3. 201s Preparing to unpack .../078-libjs-d3_3.5.17-4_all.deb ... 201s Unpacking libjs-d3 (3.5.17-4) ... 201s Selecting previously unselected package libjs-es5-shim. 201s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ... 201s Unpacking libjs-es5-shim (4.6.7-2) ... 201s Selecting previously unselected package libjs-highlight.js. 201s Preparing to unpack .../080-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 201s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 201s Selecting previously unselected package libjs-jquery. 201s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 201s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 201s Selecting previously unselected package libjs-jquery-datatables. 201s Preparing to unpack .../082-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 201s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 201s Selecting previously unselected package libjs-sifter.js. 201s Preparing to unpack .../083-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 201s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 201s Selecting previously unselected package libjs-microplugin.js. 201s Preparing to unpack .../084-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 201s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 201s Selecting previously unselected package libjs-jquery-selectize.js. 201s Preparing to unpack .../085-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 201s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 201s Selecting previously unselected package libjs-jquery-ui. 201s Preparing to unpack .../086-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 201s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 201s Selecting previously unselected package libjs-json. 201s Preparing to unpack .../087-libjs-json_0~20221030+~1.0.8-1_all.deb ... 201s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 201s Selecting previously unselected package libjs-lunr. 201s Preparing to unpack .../088-libjs-lunr_2.3.9~dfsg-2_all.deb ... 201s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 201s Selecting previously unselected package libjs-prettify. 201s Preparing to unpack .../089-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 201s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 201s Selecting previously unselected package libkpathsea6:s390x. 201s Preparing to unpack .../090-libkpathsea6_2023.20230311.66589-9_s390x.deb ... 201s Unpacking libkpathsea6:s390x (2023.20230311.66589-9) ... 201s Selecting previously unselected package liblapack3:s390x. 201s Preparing to unpack .../091-liblapack3_3.12.0-3_s390x.deb ... 201s Unpacking liblapack3:s390x (3.12.0-3) ... 201s Selecting previously unselected package liblapack-dev:s390x. 201s Preparing to unpack .../092-liblapack-dev_3.12.0-3_s390x.deb ... 201s Unpacking liblapack-dev:s390x (3.12.0-3) ... 201s Selecting previously unselected package liblua5.4-0:s390x. 201s Preparing to unpack .../093-liblua5.4-0_5.4.6-3_s390x.deb ... 201s Unpacking liblua5.4-0:s390x (5.4.6-3) ... 201s Selecting previously unselected package libncurses-dev:s390x. 201s Preparing to unpack .../094-libncurses-dev_6.4+20240113-1ubuntu1_s390x.deb ... 201s Unpacking libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 201s Selecting previously unselected package libthai-data. 201s Preparing to unpack .../095-libthai-data_0.1.29-2_all.deb ... 201s Unpacking libthai-data (0.1.29-2) ... 201s Selecting previously unselected package libthai0:s390x. 201s Preparing to unpack .../096-libthai0_0.1.29-2_s390x.deb ... 201s Unpacking libthai0:s390x (0.1.29-2) ... 201s Selecting previously unselected package libpango-1.0-0:s390x. 201s Preparing to unpack .../097-libpango-1.0-0_1.51.0+ds-4_s390x.deb ... 201s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ... 202s Selecting previously unselected package libpangoft2-1.0-0:s390x. 202s Preparing to unpack .../098-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ... 202s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 202s Selecting previously unselected package libpangocairo-1.0-0:s390x. 202s Preparing to unpack .../099-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 202s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 202s Selecting previously unselected package libpaper1:s390x. 202s Preparing to unpack .../100-libpaper1_1.1.29_s390x.deb ... 202s Unpacking libpaper1:s390x (1.1.29) ... 202s Selecting previously unselected package libpaper-utils. 202s Preparing to unpack .../101-libpaper-utils_1.1.29_s390x.deb ... 202s Unpacking libpaper-utils (1.1.29) ... 202s Selecting previously unselected package libpcre2-16-0:s390x. 202s Preparing to unpack .../102-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ... 202s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ... 202s Selecting previously unselected package libpcre2-32-0:s390x. 202s Preparing to unpack .../103-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ... 202s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ... 202s Selecting previously unselected package libpcre2-posix3:s390x. 202s Preparing to unpack .../104-libpcre2-posix3_10.42-4ubuntu1_s390x.deb ... 202s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ... 202s Selecting previously unselected package libpcre2-dev:s390x. 202s Preparing to unpack .../105-libpcre2-dev_10.42-4ubuntu1_s390x.deb ... 202s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ... 202s Selecting previously unselected package libpkgconf3:s390x. 202s Preparing to unpack .../106-libpkgconf3_1.8.1-2_s390x.deb ... 202s Unpacking libpkgconf3:s390x (1.8.1-2) ... 202s Selecting previously unselected package zlib1g-dev:s390x. 202s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 202s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 202s Selecting previously unselected package libpng-dev:s390x. 202s Preparing to unpack .../108-libpng-dev_1.6.43-1_s390x.deb ... 202s Unpacking libpng-dev:s390x (1.6.43-1) ... 202s Selecting previously unselected package libpotrace0:s390x. 202s Preparing to unpack .../109-libpotrace0_1.16-2_s390x.deb ... 202s Unpacking libpotrace0:s390x (1.16-2) ... 202s Selecting previously unselected package libptexenc1:s390x. 202s Preparing to unpack .../110-libptexenc1_2023.20230311.66589-9_s390x.deb ... 202s Unpacking libptexenc1:s390x (2023.20230311.66589-9) ... 202s Selecting previously unselected package libreadline-dev:s390x. 202s Preparing to unpack .../111-libreadline-dev_8.2-3_s390x.deb ... 202s Unpacking libreadline-dev:s390x (8.2-3) ... 202s Selecting previously unselected package libsharpyuv0:s390x. 202s Preparing to unpack .../112-libsharpyuv0_1.3.2-0.4_s390x.deb ... 202s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 202s Selecting previously unselected package libsm6:s390x. 202s Preparing to unpack .../113-libsm6_2%3a1.2.3-1build2_s390x.deb ... 202s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 202s Selecting previously unselected package libsynctex2:s390x. 202s Preparing to unpack .../114-libsynctex2_2023.20230311.66589-9_s390x.deb ... 202s Unpacking libsynctex2:s390x (2023.20230311.66589-9) ... 202s Selecting previously unselected package libtcl8.6:s390x. 202s Preparing to unpack .../115-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 202s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 202s Selecting previously unselected package libteckit0:s390x. 202s Preparing to unpack .../116-libteckit0_2.5.12+ds1-1_s390x.deb ... 202s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 202s Selecting previously unselected package libtexlua53-5:s390x. 202s Preparing to unpack .../117-libtexlua53-5_2023.20230311.66589-9_s390x.deb ... 202s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9) ... 202s Selecting previously unselected package libjbig0:s390x. 202s Preparing to unpack .../118-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 202s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 202s Selecting previously unselected package libwebp7:s390x. 202s Preparing to unpack .../119-libwebp7_1.3.2-0.4_s390x.deb ... 202s Unpacking libwebp7:s390x (1.3.2-0.4) ... 202s Selecting previously unselected package libtiff6:s390x. 202s Preparing to unpack .../120-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 202s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 202s Selecting previously unselected package libxft2:s390x. 202s Preparing to unpack .../121-libxft2_2.3.6-1_s390x.deb ... 202s Unpacking libxft2:s390x (2.3.6-1) ... 202s Selecting previously unselected package libxss1:s390x. 202s Preparing to unpack .../122-libxss1_1%3a1.2.3-1build2_s390x.deb ... 202s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 202s Selecting previously unselected package libtk8.6:s390x. 202s Preparing to unpack .../123-libtk8.6_8.6.13-2_s390x.deb ... 202s Unpacking libtk8.6:s390x (8.6.13-2) ... 202s Selecting previously unselected package libxt6:s390x. 202s Preparing to unpack .../124-libxt6_1%3a1.2.1-1.1_s390x.deb ... 202s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 202s Selecting previously unselected package libxmu6:s390x. 202s Preparing to unpack .../125-libxmu6_2%3a1.1.3-3_s390x.deb ... 202s Unpacking libxmu6:s390x (2:1.1.3-3) ... 202s Selecting previously unselected package libxpm4:s390x. 202s Preparing to unpack .../126-libxpm4_1%3a3.5.17-1_s390x.deb ... 202s Unpacking libxpm4:s390x (1:3.5.17-1) ... 202s Selecting previously unselected package libxaw7:s390x. 202s Preparing to unpack .../127-libxaw7_2%3a1.0.14-1_s390x.deb ... 202s Unpacking libxaw7:s390x (2:1.0.14-1) ... 202s Selecting previously unselected package libxi6:s390x. 202s Preparing to unpack .../128-libxi6_2%3a1.8.1-1_s390x.deb ... 202s Unpacking libxi6:s390x (2:1.8.1-1) ... 202s Selecting previously unselected package libzzip-0-13:s390x. 202s Preparing to unpack .../129-libzzip-0-13_0.13.72+dfsg.1-1.1_s390x.deb ... 202s Unpacking libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 202s Selecting previously unselected package zip. 202s Preparing to unpack .../130-zip_3.0-13_s390x.deb ... 202s Unpacking zip (3.0-13) ... 202s Selecting previously unselected package unzip. 202s Preparing to unpack .../131-unzip_6.0-28ubuntu3_s390x.deb ... 202s Unpacking unzip (6.0-28ubuntu3) ... 202s Selecting previously unselected package xdg-utils. 202s Preparing to unpack .../132-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 202s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 202s Selecting previously unselected package r-base-core. 202s Preparing to unpack .../133-r-base-core_4.3.2-1build1_s390x.deb ... 202s Unpacking r-base-core (4.3.2-1build1) ... 203s Selecting previously unselected package r-cran-littler. 203s Preparing to unpack .../134-r-cran-littler_0.3.19-1_s390x.deb ... 203s Unpacking r-cran-littler (0.3.19-1) ... 203s Selecting previously unselected package littler. 203s Preparing to unpack .../135-littler_0.3.19-1_all.deb ... 203s Unpacking littler (0.3.19-1) ... 203s Selecting previously unselected package node-bootstrap-sass. 203s Preparing to unpack .../136-node-bootstrap-sass_3.4.3-2_all.deb ... 203s Unpacking node-bootstrap-sass (3.4.3-2) ... 203s Selecting previously unselected package node-html5shiv. 203s Preparing to unpack .../137-node-html5shiv_3.7.3+dfsg-5_all.deb ... 203s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 203s Selecting previously unselected package node-normalize.css. 203s Preparing to unpack .../138-node-normalize.css_8.0.1-5_all.deb ... 203s Unpacking node-normalize.css (8.0.1-5) ... 203s Selecting previously unselected package pandoc-data. 203s Preparing to unpack .../139-pandoc-data_3.1.3-1_all.deb ... 203s Unpacking pandoc-data (3.1.3-1) ... 203s Selecting previously unselected package pandoc. 203s Preparing to unpack .../140-pandoc_3.1.3+ds-2_s390x.deb ... 203s Unpacking pandoc (3.1.3+ds-2) ... 204s Selecting previously unselected package pkgconf-bin. 204s Preparing to unpack .../141-pkgconf-bin_1.8.1-2_s390x.deb ... 204s Unpacking pkgconf-bin (1.8.1-2) ... 204s Selecting previously unselected package pkgconf:s390x. 204s Preparing to unpack .../142-pkgconf_1.8.1-2_s390x.deb ... 204s Unpacking pkgconf:s390x (1.8.1-2) ... 204s Selecting previously unselected package pkg-config:s390x. 204s Preparing to unpack .../143-pkg-config_1.8.1-2_s390x.deb ... 204s Unpacking pkg-config:s390x (1.8.1-2) ... 204s Selecting previously unselected package liblzma-dev:s390x. 204s Preparing to unpack .../144-liblzma-dev_5.4.5-0.3_s390x.deb ... 204s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 204s Selecting previously unselected package r-base-dev. 204s Preparing to unpack .../145-r-base-dev_4.3.2-1build1_all.deb ... 204s Unpacking r-base-dev (4.3.2-1build1) ... 204s Selecting previously unselected package pkg-r-autopkgtest. 204s Preparing to unpack .../146-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 204s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 205s Selecting previously unselected package r-bioc-biocgenerics. 205s Preparing to unpack .../147-r-bioc-biocgenerics_0.48.1-2_all.deb ... 205s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 205s Selecting previously unselected package r-bioc-biobase. 205s Preparing to unpack .../148-r-bioc-biobase_2.62.0-1_s390x.deb ... 205s Unpacking r-bioc-biobase (2.62.0-1) ... 205s Selecting previously unselected package r-bioc-s4vectors. 205s Preparing to unpack .../149-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 205s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 205s Selecting previously unselected package r-bioc-iranges. 205s Preparing to unpack .../150-r-bioc-iranges_2.36.0-1_s390x.deb ... 205s Unpacking r-bioc-iranges (2.36.0-1) ... 205s Selecting previously unselected package r-cran-dbi. 205s Preparing to unpack .../151-r-cran-dbi_1.2.2-1_all.deb ... 205s Unpacking r-cran-dbi (1.2.2-1) ... 205s Selecting previously unselected package r-cran-bit. 205s Preparing to unpack .../152-r-cran-bit_4.0.5-1_s390x.deb ... 205s Unpacking r-cran-bit (4.0.5-1) ... 205s Selecting previously unselected package r-cran-bit64. 205s Preparing to unpack .../153-r-cran-bit64_4.0.5-1_s390x.deb ... 205s Unpacking r-cran-bit64 (4.0.5-1) ... 205s Selecting previously unselected package r-cran-rlang. 205s Preparing to unpack .../154-r-cran-rlang_1.1.3-1_s390x.deb ... 205s Unpacking r-cran-rlang (1.1.3-1) ... 205s Selecting previously unselected package r-cran-cli. 205s Preparing to unpack .../155-r-cran-cli_3.6.2-1_s390x.deb ... 205s Unpacking r-cran-cli (3.6.2-1) ... 205s Selecting previously unselected package r-cran-glue. 205s Preparing to unpack .../156-r-cran-glue_1.7.0-1_s390x.deb ... 205s Unpacking r-cran-glue (1.7.0-1) ... 205s Selecting previously unselected package r-cran-lifecycle. 205s Preparing to unpack .../157-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 205s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 205s Selecting previously unselected package r-cran-vctrs. 205s Preparing to unpack .../158-r-cran-vctrs_0.6.5-1_s390x.deb ... 205s Unpacking r-cran-vctrs (0.6.5-1) ... 205s Selecting previously unselected package r-cran-blob. 205s Preparing to unpack .../159-r-cran-blob_1.2.4-1_all.deb ... 205s Unpacking r-cran-blob (1.2.4-1) ... 205s Selecting previously unselected package r-cran-fastmap. 205s Preparing to unpack .../160-r-cran-fastmap_1.1.1-1_s390x.deb ... 205s Unpacking r-cran-fastmap (1.1.1-1) ... 205s Selecting previously unselected package r-cran-cachem. 205s Preparing to unpack .../161-r-cran-cachem_1.0.8-1_s390x.deb ... 205s Unpacking r-cran-cachem (1.0.8-1) ... 205s Selecting previously unselected package r-cran-memoise. 205s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ... 205s Unpacking r-cran-memoise (2.0.1-1) ... 205s Selecting previously unselected package r-cran-pkgconfig. 205s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 205s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 205s Selecting previously unselected package r-cran-plogr. 205s Preparing to unpack .../164-r-cran-plogr_0.2.0-3build1_all.deb ... 205s Unpacking r-cran-plogr (0.2.0-3build1) ... 205s Selecting previously unselected package r-cran-cpp11. 205s Preparing to unpack .../165-r-cran-cpp11_0.4.7-1_all.deb ... 205s Unpacking r-cran-cpp11 (0.4.7-1) ... 205s Selecting previously unselected package r-cran-rsqlite. 205s Preparing to unpack .../166-r-cran-rsqlite_2.3.4-1_s390x.deb ... 205s Unpacking r-cran-rsqlite (2.3.4-1) ... 205s Selecting previously unselected package r-cran-curl. 205s Preparing to unpack .../167-r-cran-curl_5.2.0+dfsg-1_s390x.deb ... 205s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 205s Selecting previously unselected package r-cran-jsonlite. 205s Preparing to unpack .../168-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 205s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 205s Selecting previously unselected package r-cran-mime. 205s Preparing to unpack .../169-r-cran-mime_0.12-1_s390x.deb ... 205s Unpacking r-cran-mime (0.12-1) ... 205s Selecting previously unselected package r-cran-sys. 205s Preparing to unpack .../170-r-cran-sys_3.4.2-1_s390x.deb ... 205s Unpacking r-cran-sys (3.4.2-1) ... 205s Selecting previously unselected package r-cran-askpass. 205s Preparing to unpack .../171-r-cran-askpass_1.2.0-1_s390x.deb ... 205s Unpacking r-cran-askpass (1.2.0-1) ... 205s Selecting previously unselected package r-cran-openssl. 205s Preparing to unpack .../172-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ... 205s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 205s Selecting previously unselected package r-cran-r6. 205s Preparing to unpack .../173-r-cran-r6_2.5.1-1_all.deb ... 205s Unpacking r-cran-r6 (2.5.1-1) ... 205s Selecting previously unselected package r-cran-httr. 205s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ... 205s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 205s Selecting previously unselected package r-cran-png. 205s Preparing to unpack .../175-r-cran-png_0.1-8-1_s390x.deb ... 205s Unpacking r-cran-png (0.1-8-1) ... 205s Selecting previously unselected package r-bioc-zlibbioc. 205s Preparing to unpack .../176-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 205s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 205s Selecting previously unselected package r-bioc-xvector. 205s Preparing to unpack .../177-r-bioc-xvector_0.42.0-1_s390x.deb ... 205s Unpacking r-bioc-xvector (0.42.0-1) ... 205s Selecting previously unselected package r-cran-bitops. 205s Preparing to unpack .../178-r-cran-bitops_1.0-7-1_s390x.deb ... 205s Unpacking r-cran-bitops (1.0-7-1) ... 205s Selecting previously unselected package r-cran-rcurl. 205s Preparing to unpack .../179-r-cran-rcurl_1.98-1.14+dfsg-1_s390x.deb ... 205s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 205s Selecting previously unselected package r-bioc-genomeinfodbdata. 205s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 205s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 205s Selecting previously unselected package r-bioc-genomeinfodb. 205s Preparing to unpack .../181-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 205s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 206s Selecting previously unselected package r-cran-crayon. 206s Preparing to unpack .../182-r-cran-crayon_1.5.2-1_all.deb ... 206s Unpacking r-cran-crayon (1.5.2-1) ... 206s Selecting previously unselected package r-bioc-biostrings. 206s Preparing to unpack .../183-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 206s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 206s Selecting previously unselected package r-bioc-keggrest. 206s Preparing to unpack .../184-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 206s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 206s Selecting previously unselected package r-bioc-annotationdbi. 206s Preparing to unpack .../185-r-bioc-annotationdbi_1.64.1-1_all.deb ... 206s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 206s Selecting previously unselected package r-cran-generics. 206s Preparing to unpack .../186-r-cran-generics_0.1.3-1_all.deb ... 206s Unpacking r-cran-generics (0.1.3-1) ... 206s Selecting previously unselected package r-cran-magrittr. 206s Preparing to unpack .../187-r-cran-magrittr_2.0.3-1_s390x.deb ... 206s Unpacking r-cran-magrittr (2.0.3-1) ... 206s Selecting previously unselected package r-cran-fansi. 206s Preparing to unpack .../188-r-cran-fansi_1.0.5-1_s390x.deb ... 206s Unpacking r-cran-fansi (1.0.5-1) ... 206s Selecting previously unselected package r-cran-utf8. 206s Preparing to unpack .../189-r-cran-utf8_1.2.4-1_s390x.deb ... 206s Unpacking r-cran-utf8 (1.2.4-1) ... 206s Selecting previously unselected package r-cran-pillar. 206s Preparing to unpack .../190-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 206s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 206s Selecting previously unselected package r-cran-tibble. 206s Preparing to unpack .../191-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 206s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 206s Selecting previously unselected package r-cran-withr. 206s Preparing to unpack .../192-r-cran-withr_2.5.0-1_all.deb ... 206s Unpacking r-cran-withr (2.5.0-1) ... 206s Selecting previously unselected package r-cran-tidyselect. 206s Preparing to unpack .../193-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 206s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 206s Selecting previously unselected package r-cran-dplyr. 206s Preparing to unpack .../194-r-cran-dplyr_1.1.4-1_s390x.deb ... 206s Unpacking r-cran-dplyr (1.1.4-1) ... 206s Selecting previously unselected package r-cran-purrr. 206s Preparing to unpack .../195-r-cran-purrr_1.0.2-1_s390x.deb ... 206s Unpacking r-cran-purrr (1.0.2-1) ... 206s Selecting previously unselected package r-cran-stringi. 206s Preparing to unpack .../196-r-cran-stringi_1.8.3-1_s390x.deb ... 206s Unpacking r-cran-stringi (1.8.3-1) ... 206s Selecting previously unselected package r-cran-stringr. 206s Preparing to unpack .../197-r-cran-stringr_1.5.1-1_all.deb ... 206s Unpacking r-cran-stringr (1.5.1-1) ... 206s Selecting previously unselected package r-cran-tidyr. 206s Preparing to unpack .../198-r-cran-tidyr_1.3.1-1_s390x.deb ... 206s Unpacking r-cran-tidyr (1.3.1-1) ... 206s Selecting previously unselected package r-cran-dbplyr. 206s Preparing to unpack .../199-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 206s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 206s Selecting previously unselected package r-cran-filelock. 206s Preparing to unpack .../200-r-cran-filelock_1.0.3-1_s390x.deb ... 206s Unpacking r-cran-filelock (1.0.3-1) ... 206s Selecting previously unselected package r-bioc-biocfilecache. 206s Preparing to unpack .../201-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 206s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 206s Selecting previously unselected package r-bioc-biocio. 206s Preparing to unpack .../202-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 206s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 206s Selecting previously unselected package r-cran-formatr. 206s Preparing to unpack .../203-r-cran-formatr_1.14-1_all.deb ... 206s Unpacking r-cran-formatr (1.14-1) ... 206s Selecting previously unselected package r-cran-lambda.r. 206s Preparing to unpack .../204-r-cran-lambda.r_1.2.4-2build1_all.deb ... 206s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 206s Selecting previously unselected package r-cran-futile.options. 206s Preparing to unpack .../205-r-cran-futile.options_1.0.1-3build1_all.deb ... 206s Unpacking r-cran-futile.options (1.0.1-3build1) ... 206s Selecting previously unselected package r-cran-futile.logger. 206s Preparing to unpack .../206-r-cran-futile.logger_1.4.3-4build1_all.deb ... 206s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 206s Selecting previously unselected package r-cran-snow. 206s Preparing to unpack .../207-r-cran-snow_1%3a0.4.4-2_all.deb ... 206s Unpacking r-cran-snow (1:0.4.4-2) ... 206s Selecting previously unselected package r-cran-codetools. 206s Preparing to unpack .../208-r-cran-codetools_0.2-19-1_all.deb ... 206s Unpacking r-cran-codetools (0.2-19-1) ... 206s Selecting previously unselected package r-cran-bh. 206s Preparing to unpack .../209-r-cran-bh_1.84.0-1_all.deb ... 206s Unpacking r-cran-bh (1.84.0-1) ... 206s Selecting previously unselected package r-bioc-biocparallel. 206s Preparing to unpack .../210-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 206s Unpacking r-bioc-biocparallel (1.36.0-1) ... 206s Selecting previously unselected package r-cran-base64enc. 206s Preparing to unpack .../211-r-cran-base64enc_0.1-3-3_s390x.deb ... 206s Unpacking r-cran-base64enc (0.1-3-3) ... 206s Selecting previously unselected package r-cran-digest. 206s Preparing to unpack .../212-r-cran-digest_0.6.34-1_s390x.deb ... 206s Unpacking r-cran-digest (0.6.34-1) ... 207s Selecting previously unselected package r-cran-ellipsis. 207s Preparing to unpack .../213-r-cran-ellipsis_0.3.2-2_s390x.deb ... 207s Unpacking r-cran-ellipsis (0.3.2-2) ... 207s Selecting previously unselected package r-cran-htmltools. 207s Preparing to unpack .../214-r-cran-htmltools_0.5.7-1_s390x.deb ... 207s Unpacking r-cran-htmltools (0.5.7-1) ... 207s Selecting previously unselected package r-cran-evaluate. 207s Preparing to unpack .../215-r-cran-evaluate_0.23-1_all.deb ... 207s Unpacking r-cran-evaluate (0.23-1) ... 207s Selecting previously unselected package r-cran-xfun. 207s Preparing to unpack .../216-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 207s Unpacking r-cran-xfun (0.41+dfsg-1) ... 207s Selecting previously unselected package r-cran-highr. 207s Preparing to unpack .../217-r-cran-highr_0.10+dfsg-1_all.deb ... 207s Unpacking r-cran-highr (0.10+dfsg-1) ... 207s Selecting previously unselected package r-cran-yaml. 207s Preparing to unpack .../218-r-cran-yaml_2.3.8-1_s390x.deb ... 207s Unpacking r-cran-yaml (2.3.8-1) ... 207s Selecting previously unselected package libjs-mathjax. 207s Preparing to unpack .../219-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 207s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 208s Selecting previously unselected package r-cran-knitr. 208s Preparing to unpack .../220-r-cran-knitr_1.45+dfsg-1_all.deb ... 208s Unpacking r-cran-knitr (1.45+dfsg-1) ... 208s Selecting previously unselected package r-cran-jquerylib. 208s Preparing to unpack .../221-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 208s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 208s Selecting previously unselected package r-cran-fs. 208s Preparing to unpack .../222-r-cran-fs_1.6.3+dfsg-1_s390x.deb ... 208s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 208s Selecting previously unselected package r-cran-rappdirs. 208s Preparing to unpack .../223-r-cran-rappdirs_0.3.3-1_s390x.deb ... 208s Unpacking r-cran-rappdirs (0.3.3-1) ... 208s Selecting previously unselected package r-cran-sass. 208s Preparing to unpack .../224-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 208s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 208s Selecting previously unselected package r-cran-bslib. 208s Preparing to unpack .../225-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 208s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 208s Selecting previously unselected package r-cran-fontawesome. 208s Preparing to unpack .../226-r-cran-fontawesome_0.5.2-1_all.deb ... 208s Unpacking r-cran-fontawesome (0.5.2-1) ... 208s Selecting previously unselected package r-cran-tinytex. 208s Preparing to unpack .../227-r-cran-tinytex_0.49-1_all.deb ... 208s Unpacking r-cran-tinytex (0.49-1) ... 208s Selecting previously unselected package libjs-modernizr. 208s Preparing to unpack .../228-libjs-modernizr_2.6.2+ds1-5_all.deb ... 208s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 208s Selecting previously unselected package r-cran-pkgkitten. 208s Preparing to unpack .../229-r-cran-pkgkitten_0.2.3-1_all.deb ... 208s Unpacking r-cran-pkgkitten (0.2.3-1) ... 208s Selecting previously unselected package r-cran-rcpp. 208s Preparing to unpack .../230-r-cran-rcpp_1.0.12-1_s390x.deb ... 208s Unpacking r-cran-rcpp (1.0.12-1) ... 208s Selecting previously unselected package r-cran-later. 208s Preparing to unpack .../231-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 208s Unpacking r-cran-later (1.3.2+dfsg-1) ... 208s Selecting previously unselected package r-cran-promises. 208s Preparing to unpack .../232-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 208s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 208s Selecting previously unselected package r-cran-httpuv. 208s Preparing to unpack .../233-r-cran-httpuv_1.6.14+dfsg-1_s390x.deb ... 208s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 208s Selecting previously unselected package r-cran-xtable. 208s Preparing to unpack .../234-r-cran-xtable_1%3a1.8-4-2_all.deb ... 208s Unpacking r-cran-xtable (1:1.8-4-2) ... 208s Selecting previously unselected package r-cran-sourcetools. 208s Preparing to unpack .../235-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 208s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 208s Selecting previously unselected package r-cran-commonmark. 208s Preparing to unpack .../236-r-cran-commonmark_1.9.1-1_s390x.deb ... 208s Unpacking r-cran-commonmark (1.9.1-1) ... 208s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 208s Preparing to unpack .../237-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 208s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 208s Selecting previously unselected package r-cran-shiny. 208s Preparing to unpack .../238-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 208s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 209s Selecting previously unselected package r-cran-rmarkdown. 209s Preparing to unpack .../239-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 209s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 209s Selecting previously unselected package r-cran-bookdown. 209s Preparing to unpack .../240-r-cran-bookdown_0.37+dfsg-1_all.deb ... 209s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 209s Selecting previously unselected package r-cran-biocmanager. 209s Preparing to unpack .../241-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 209s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 209s Selecting previously unselected package tex-common. 209s Preparing to unpack .../242-tex-common_6.18_all.deb ... 209s Unpacking tex-common (6.18) ... 209s Selecting previously unselected package t1utils. 209s Preparing to unpack .../243-t1utils_1.41-4build2_s390x.deb ... 209s Unpacking t1utils (1.41-4build2) ... 209s Selecting previously unselected package texlive-binaries. 209s Preparing to unpack .../244-texlive-binaries_2023.20230311.66589-9_s390x.deb ... 209s Unpacking texlive-binaries (2023.20230311.66589-9) ... 209s Selecting previously unselected package texlive-base. 209s Preparing to unpack .../245-texlive-base_2023.20240207-1_all.deb ... 209s Unpacking texlive-base (2023.20240207-1) ... 211s Selecting previously unselected package texlive-latex-base. 211s Preparing to unpack .../246-texlive-latex-base_2023.20240207-1_all.deb ... 211s Unpacking texlive-latex-base (2023.20240207-1) ... 212s Selecting previously unselected package texlive-bibtex-extra. 212s Preparing to unpack .../247-texlive-bibtex-extra_2023.20240207-1_all.deb ... 212s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 219s Selecting previously unselected package r-bioc-biocstyle. 219s Preparing to unpack .../248-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 219s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 219s Selecting previously unselected package r-cran-xml. 219s Preparing to unpack .../249-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 219s Unpacking r-cran-xml (3.99-0.16.1-1) ... 219s Selecting previously unselected package r-cran-hms. 219s Preparing to unpack .../250-r-cran-hms_1.1.3-1_all.deb ... 219s Unpacking r-cran-hms (1.1.3-1) ... 219s Selecting previously unselected package r-cran-prettyunits. 219s Preparing to unpack .../251-r-cran-prettyunits_1.2.0-1_all.deb ... 219s Unpacking r-cran-prettyunits (1.2.0-1) ... 219s Selecting previously unselected package r-cran-progress. 219s Preparing to unpack .../252-r-cran-progress_1.2.3-1_all.deb ... 219s Unpacking r-cran-progress (1.2.3-1) ... 219s Selecting previously unselected package r-cran-xml2. 219s Preparing to unpack .../253-r-cran-xml2_1.3.6-1_s390x.deb ... 219s Unpacking r-cran-xml2 (1.3.6-1) ... 219s Selecting previously unselected package r-bioc-biomart. 219s Preparing to unpack .../254-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 219s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 219s Selecting previously unselected package r-cran-lattice. 219s Preparing to unpack .../255-r-cran-lattice_0.22-5-1_s390x.deb ... 219s Unpacking r-cran-lattice (0.22-5-1) ... 219s Selecting previously unselected package r-cran-matrix. 219s Preparing to unpack .../256-r-cran-matrix_1.6-5-1_s390x.deb ... 219s Unpacking r-cran-matrix (1.6-5-1) ... 219s Selecting previously unselected package r-cran-matrixstats. 219s Preparing to unpack .../257-r-cran-matrixstats_1.2.0-1_s390x.deb ... 219s Unpacking r-cran-matrixstats (1.2.0-1) ... 219s Selecting previously unselected package r-bioc-matrixgenerics. 219s Preparing to unpack .../258-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 219s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 219s Selecting previously unselected package r-cran-abind. 219s Preparing to unpack .../259-r-cran-abind_1.4-5-2_all.deb ... 219s Unpacking r-cran-abind (1.4-5-2) ... 219s Selecting previously unselected package r-bioc-s4arrays. 219s Preparing to unpack .../260-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 219s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 219s Selecting previously unselected package r-bioc-sparsearray. 219s Preparing to unpack .../261-r-bioc-sparsearray_1.2.4+dfsg-1_s390x.deb ... 219s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 219s Selecting previously unselected package r-bioc-delayedarray. 219s Preparing to unpack .../262-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ... 219s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 219s Selecting previously unselected package r-bioc-genomicranges. 219s Preparing to unpack .../263-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 219s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 220s Selecting previously unselected package r-bioc-summarizedexperiment. 220s Preparing to unpack .../264-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 220s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 220s Selecting previously unselected package r-bioc-rhtslib. 220s Preparing to unpack .../265-r-bioc-rhtslib_2.4.1+dfsg-1_s390x.deb ... 220s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 220s Selecting previously unselected package r-bioc-rsamtools. 220s Preparing to unpack .../266-r-bioc-rsamtools_2.18.0+dfsg-1build1_s390x.deb ... 220s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 220s Selecting previously unselected package r-bioc-genomicalignments. 220s Preparing to unpack .../267-r-bioc-genomicalignments_1.38.2-1_s390x.deb ... 220s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 220s Selecting previously unselected package r-cran-rjson. 220s Preparing to unpack .../268-r-cran-rjson_0.2.21-1_s390x.deb ... 220s Unpacking r-cran-rjson (0.2.21-1) ... 220s Selecting previously unselected package r-cran-restfulr. 220s Preparing to unpack .../269-r-cran-restfulr_0.0.15-1_s390x.deb ... 220s Unpacking r-cran-restfulr (0.0.15-1) ... 220s Selecting previously unselected package r-bioc-rtracklayer. 220s Preparing to unpack .../270-r-bioc-rtracklayer_1.62.0-1_s390x.deb ... 220s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 220s Selecting previously unselected package r-bioc-genomicfeatures. 220s Preparing to unpack .../271-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 220s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 220s Selecting previously unselected package r-cran-hwriter. 220s Preparing to unpack .../272-r-cran-hwriter_1.3.2.1-1_all.deb ... 220s Unpacking r-cran-hwriter (1.3.2.1-1) ... 220s Selecting previously unselected package r-cran-jpeg. 220s Preparing to unpack .../273-r-cran-jpeg_0.1-10-1_s390x.deb ... 220s Unpacking r-cran-jpeg (0.1-10-1) ... 220s Selecting previously unselected package r-cran-rcolorbrewer. 220s Preparing to unpack .../274-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 220s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 220s Selecting previously unselected package r-cran-deldir. 220s Preparing to unpack .../275-r-cran-deldir_2.0-4-1_s390x.deb ... 220s Unpacking r-cran-deldir (2.0-4-1) ... 220s Selecting previously unselected package r-cran-rcppeigen. 220s Preparing to unpack .../276-r-cran-rcppeigen_0.3.3.9.4-1_s390x.deb ... 220s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 220s Selecting previously unselected package r-cran-interp. 220s Preparing to unpack .../277-r-cran-interp_1.1-6-1_s390x.deb ... 220s Unpacking r-cran-interp (1.1-6-1) ... 220s Selecting previously unselected package r-cran-mass. 220s Preparing to unpack .../278-r-cran-mass_7.3-60.0.1-1_s390x.deb ... 220s Unpacking r-cran-mass (7.3-60.0.1-1) ... 220s Selecting previously unselected package r-cran-latticeextra. 220s Preparing to unpack .../279-r-cran-latticeextra_0.6-30-1_all.deb ... 220s Unpacking r-cran-latticeextra (0.6-30-1) ... 220s Selecting previously unselected package r-bioc-shortread. 220s Preparing to unpack .../280-r-bioc-shortread_1.60.0-2_s390x.deb ... 220s Unpacking r-bioc-shortread (1.60.0-2) ... 220s Selecting previously unselected package r-cran-runit. 220s Preparing to unpack .../281-r-cran-runit_0.4.32-3_all.deb ... 220s Unpacking r-cran-runit (0.4.32-3) ... 220s Selecting previously unselected package autopkgtest-satdep. 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/usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 225s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 225s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 225s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 225s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 225s Setting up r-cran-bitops (1.0-7-1) ... 225s Setting up r-cran-bit64 (4.0.5-1) ... 225s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 225s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 225s Setting up r-cran-deldir (2.0-4-1) ... 225s Setting up r-cran-askpass (1.2.0-1) ... 225s Setting up r-cran-fastmap (1.1.1-1) ... 225s Setting up r-cran-png (0.1-8-1) ... 225s Setting up r-bioc-biobase (2.62.0-1) ... 225s Setting up r-cran-jsonlite 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... 225s Setting up r-cran-blob (1.2.4-1) ... 225s Setting up r-cran-htmltools (0.5.7-1) ... 225s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 225s Setting up r-bioc-xvector (0.42.0-1) ... 225s Setting up r-cran-sass (0.4.8+dfsg-1) ... 225s Setting up r-cran-dplyr (1.1.4-1) ... 225s Setting up r-cran-rsqlite (2.3.4-1) ... 225s Setting up r-cran-progress (1.2.3-1) ... 225s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 225s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 225s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 225s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 225s Setting up r-cran-fontawesome (0.5.2-1) ... 225s Setting up r-cran-latticeextra (0.6-30-1) ... 225s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 225s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 225s Setting up r-cran-tidyr (1.3.1-1) ... 225s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 225s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 225s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 225s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 225s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 225s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 225s Setting up r-bioc-annotationdbi (1.64.1-1) ... 225s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 225s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 225s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 225s Setting up r-bioc-genomicalignments (1.38.2-1) ... 225s Setting up r-cran-bookdown (0.37+dfsg-1) ... 225s Setting up r-bioc-rtracklayer (1.62.0-1) ... 225s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 225s Setting up r-bioc-shortread (1.60.0-2) ... 225s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 225s Setting up autopkgtest-satdep (0) ... 225s Processing triggers for man-db (2.12.0-3) ... 226s Processing triggers for install-info (7.1-3) ... 226s Processing triggers for libc-bin (2.39-0ubuntu2) ... 226s Processing triggers for tex-common (6.18) ... 226s Running updmap-sys. This may take some time... done. 226s Running mktexlsr /var/lib/texmf ... done. 226s Building format(s) --all. 271s This may take some time... done. 278s (Reading database ... 102326 files and directories currently installed.) 278s Removing autopkgtest-satdep (0) ... 278s autopkgtest [18:59:31]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 278s autopkgtest [18:59:31]: test pkg-r-autopkgtest: [----------------------- 278s Test: Try to load the R library ShortRead 278s 278s R version 4.3.2 (2023-10-31) -- "Eye Holes" 278s Copyright (C) 2023 The R Foundation for Statistical Computing 278s Platform: s390x-ibm-linux-gnu (64-bit) 278s 278s R is free software and comes with ABSOLUTELY NO WARRANTY. 278s You are welcome to redistribute it under certain conditions. 278s Type 'license()' or 'licence()' for distribution details. 278s 278s R is a collaborative project with many contributors. 278s Type 'contributors()' for more information and 278s 'citation()' on how to cite R or R packages in publications. 278s 278s Type 'demo()' for some demos, 'help()' for on-line help, or 278s 'help.start()' for an HTML browser interface to help. 278s Type 'q()' to quit R. 278s 279s > library('ShortRead') 279s Loading required package: BiocGenerics 279s 279s Attaching package: ‘BiocGenerics’ 279s 279s The following objects are masked from ‘package:stats’: 279s 279s IQR, mad, sd, var, xtabs 279s 279s The following objects are masked from ‘package:base’: 279s 279s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 279s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 279s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 279s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 279s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 279s table, tapply, union, unique, unsplit, which.max, which.min 279s 279s Loading required package: BiocParallel 279s Loading required package: Biostrings 279s Loading required package: S4Vectors 279s Loading required package: stats4 279s 279s Attaching package: ‘S4Vectors’ 279s 279s The following object is masked from ‘package:utils’: 279s 279s findMatches 279s 279s The following objects are masked from ‘package:base’: 279s 279s expand.grid, I, unname 279s 279s Loading required package: IRanges 280s Loading required package: XVector 280s Loading required package: GenomeInfoDb 281s 281s Attaching package: ‘Biostrings’ 281s 281s The following object is masked from ‘package:base’: 281s 281s strsplit 281s 281s Loading required package: Rsamtools 281s Loading required package: GenomicRanges 282s Loading required package: GenomicAlignments 282s Loading required package: SummarizedExperiment 282s Loading required package: MatrixGenerics 282s Loading required package: matrixStats 282s 282s Attaching package: ‘MatrixGenerics’ 282s 282s The following objects are masked from ‘package:matrixStats’: 282s 282s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 282s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 282s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 282s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 282s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 282s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 282s colWeightedMeans, colWeightedMedians, colWeightedSds, 282s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 282s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 282s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 282s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 282s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 282s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 282s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 282s rowWeightedSds, rowWeightedVars 282s 282s Loading required package: Biobase 282s Welcome to Bioconductor 282s 282s Vignettes contain introductory material; view with 282s 'browseVignettes()'. To cite Bioconductor, see 282s 'citation("Biobase")', and for packages 'citation("pkgname")'. 282s 282s 282s Attaching package: ‘Biobase’ 282s 282s The following object is masked from ‘package:MatrixGenerics’: 282s 282s rowMedians 282s 282s The following objects are masked from ‘package:matrixStats’: 282s 282s anyMissing, rowMedians 282s 286s > 286s Warning message: 286s package ‘Rsamtools’ was built under R version 4.3.3 286s > 287s Other tests are currently unsupported! 287s They will be progressively added. 287s autopkgtest [18:59:40]: test pkg-r-autopkgtest: -----------------------] 287s pkg-r-autopkgtest PASS 287s autopkgtest [18:59:40]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 288s autopkgtest [18:59:41]: @@@@@@@@@@@@@@@@@@@@ summary 288s pkg-r-autopkgtest PASS 319s Creating nova instance adt-noble-s390x-r-bioc-shortread-20240316-185453-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...