0s autopkgtest [19:09:51]: starting date and time: 2024-03-16 19:09:51+0000
  0s autopkgtest [19:09:51]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [19:09:51]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7p3nd0zo/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-rcurl,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-rtracklayer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-rcurl/1.98-1.14+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-8.secgroup --name adt-noble-s390x-r-bioc-rtracklayer-20240316-190951-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
189s autopkgtest [19:13:00]: testbed dpkg architecture: s390x
189s autopkgtest [19:13:00]: testbed apt version: 2.7.12
189s autopkgtest [19:13:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup
190s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
190s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
190s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
190s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3657 kB]
191s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB]
191s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB]
191s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B]
191s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B]
191s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B]
191s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3758 kB]
191s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B]
191s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB]
191s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B]
193s Fetched 8740 kB in 2s (3872 kB/s)
193s Reading package lists...
195s Reading package lists...
196s Building dependency tree...
196s Reading state information...
196s Calculating upgrade...
196s The following packages will be REMOVED:
196s   libssl3
196s The following NEW packages will be installed:
196s   libssl3t64
196s The following packages have been kept back:
196s   curl
196s The following packages will be upgraded:
196s   openssl ubuntu-minimal ubuntu-standard
196s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded.
196s Need to get 2680 kB of archives.
196s After this operation, 23.6 kB of additional disk space will be used.
196s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB]
197s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB]
197s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB]
197s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB]
197s Fetched 2680 kB in 1s (2243 kB/s)
197s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 52171 files and directories currently installed.)
197s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ...
197s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
197s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested:
197s  wget depends on libssl3 (>= 3.0.0).
197s  tnftp depends on libssl3 (>= 3.0.0).
197s  tcpdump depends on libssl3 (>= 3.0.0).
197s  systemd-resolved depends on libssl3 (>= 3.0.0).
197s  systemd depends on libssl3 (>= 3.0.0).
197s  sudo depends on libssl3 (>= 3.0.0).
197s  s390-tools depends on libssl3 (>= 3.0.0).
197s  rsync depends on libssl3 (>= 3.0.0).
197s  python3-cryptography depends on libssl3 (>= 3.0.0).
197s  openssh-server depends on libssl3 (>= 3.0.10).
197s  openssh-client depends on libssl3 (>= 3.0.10).
197s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
197s  libsystemd-shared:s390x depends on libssl3 (>= 3.0.0).
197s  libssh-4:s390x depends on libssl3 (>= 3.0.0).
197s  libsasl2-modules:s390x depends on libssl3 (>= 3.0.0).
197s  libsasl2-2:s390x depends on libssl3 (>= 3.0.0).
197s  libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0).
197s  libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0).
197s  libnvme1 depends on libssl3 (>= 3.0.0).
197s  libkrb5-3:s390x depends on libssl3 (>= 3.0.0).
197s  libkmod2:s390x depends on libssl3 (>= 3.0.0).
197s  libfido2-1:s390x depends on libssl3 (>= 3.0.0).
197s  libcurl4:s390x depends on libssl3 (>= 3.0.0).
197s  libcryptsetup12:s390x depends on libssl3 (>= 3.0.0).
197s  kmod depends on libssl3 (>= 3.0.0).
197s  dhcpcd-base depends on libssl3 (>= 3.0.0).
197s  bind9-libs:s390x depends on libssl3 (>= 3.0.0).
197s 
197s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 52171 files and directories currently installed.)
197s Removing libssl3:s390x (3.0.10-1ubuntu4) ...
197s Selecting previously unselected package libssl3t64:s390x.
198s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 52160 files and directories currently installed.)
198s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ...
198s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ...
198s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ...
198s Unpacking ubuntu-minimal (1.536) over (1.535) ...
198s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ...
198s Unpacking ubuntu-standard (1.536) over (1.535) ...
198s Setting up ubuntu-minimal (1.536) ...
198s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ...
198s Setting up ubuntu-standard (1.536) ...
198s Setting up openssl (3.0.13-0ubuntu1) ...
198s Processing triggers for man-db (2.12.0-3) ...
198s Processing triggers for libc-bin (2.39-0ubuntu2) ...
198s Reading package lists...
198s Building dependency tree...
198s Reading state information...
199s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
199s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
199s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
199s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
199s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
200s Reading package lists...
200s Reading package lists...
200s Building dependency tree...
200s Reading state information...
201s Calculating upgrade...
201s The following packages have been kept back:
201s   curl
201s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
201s Reading package lists...
201s Building dependency tree...
201s Reading state information...
201s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
203s autopkgtest [19:13:14]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024
204s autopkgtest [19:13:15]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rtracklayer
206s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rtracklayer 1.62.0-1 (dsc) [2398 B]
206s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rtracklayer 1.62.0-1 (tar) [4019 kB]
206s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rtracklayer 1.62.0-1 (diff) [27.2 kB]
206s gpgv: Signature made Thu Nov 30 17:25:54 2023 UTC
206s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
206s gpgv:                issuer "tillea@rki.de"
206s gpgv: Can't check signature: No public key
206s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rtracklayer_1.62.0-1.dsc: no acceptable signature found
207s autopkgtest [19:13:18]: testing package r-bioc-rtracklayer version 1.62.0-1
207s autopkgtest [19:13:18]: build not needed
208s autopkgtest [19:13:19]: test pkg-r-autopkgtest: preparing testbed
209s Reading package lists...
210s Building dependency tree...
210s Reading state information...
210s Starting pkgProblemResolver with broken count: 0
210s Starting 2 pkgProblemResolver with broken count: 0
210s Done
210s The following additional packages will be installed:
210s   build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl
210s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
210s   g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13
210s   gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13
210s   gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
210s   libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev
210s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64
210s   libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev
210s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
210s   libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
210s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery liblapack-dev
210s   liblapack3 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0
210s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
210s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
210s   libpng-dev libpsl5t64 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev
210s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1
210s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6
210s   linux-libc-dev node-html5shiv pkg-config pkg-r-autopkgtest pkgconf
210s   pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi
210s   r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio
210s   r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome
210s   r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb
210s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
210s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma
210s   r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools
210s   r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
210s   r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
210s   r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
210s   r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon
210s   r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-fansi
210s   r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger
210s   r-cran-futile.options r-cran-generics r-cran-glue r-cran-hms r-cran-httr
210s   r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle
210s   r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats
210s   r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig
210s   r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-purrr
210s   r-cran-r6 r-cran-rappdirs r-cran-rcurl r-cran-restfulr r-cran-rjson
210s   r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-snow r-cran-statmod
210s   r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble
210s   r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr
210s   r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip
210s   x11-common xdg-utils zip zlib1g-dev
210s Suggested packages:
210s   cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib
210s   gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison
210s   gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib
210s   gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev
210s   liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev
210s   libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
210s   libboost-contract1.83-dev libboost-coroutine1.83-dev
210s   libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
210s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
210s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
210s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
210s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
210s   libboost-numpy1.83-dev libboost-program-options1.83-dev
210s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
210s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
210s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
210s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
210s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
210s   glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
210s   tcl8.6 tk8.6 nodejs elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
210s   texlive-base texlive-latex-base texlive-plain-generic
210s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
210s   texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db
210s   r-bioc-graph r-bioc-biocstyle r-cran-knitr r-bioc-all r-cran-testthat
210s   r-cran-rmarkdown r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc
210s   r-cran-doparallel r-bioc-variantannotation r-bioc-shortread
210s   r-cran-batchtools r-cran-data.table r-cran-mockery r-cran-webmockr
210s   r-cran-biocmanager r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats
210s   r-cran-class r-cran-rcolorbrewer r-cran-r.utils r-bioc-edger
210s   r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz
210s   r-bioc-annotationhub r-bioc-dexseq r-cran-biasedurn r-cran-ellipse
210s   r-cran-gplots r-cran-locfit r-cran-mass r-bioc-sparsematrixstats
210s   r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-rstudioapi
210s   r-cran-rmysql r-cran-shiny r-cran-lubridate r-cran-getopt r-cran-formattable
210s   r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-scales
210s   r-cran-units r-cran-vdiffr r-cran-rcpp r-cran-rmpi r-cran-rlecuyer
210s   r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-evaluate
210s   r-cran-here r-cran-htmltools r-cran-pkgbuild r-cran-pkgload r-cran-plm
210s   r-cran-zoo
210s Recommended packages:
210s   bzip2-doc manpages manpages-dev libc-devtools javascript-common libpng-tools
210s   r-recommended r-doc-html r-cran-testthat r-cran-callr r-cran-covr
210s   r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-mockery
210s   r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot
210s   r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-brio r-cran-decor
210s   r-cran-desc r-cran-ggplot2 r-cran-lobstr r-cran-scales r-cran-rcpp
210s   r-cran-spelling r-cran-later r-cran-httpuv r-cran-webutils
210s   r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-testit
210s   r-cran-pkgload r-cran-waldo r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf
210s   r-cran-lintr r-cran-tidyverse r-cran-base64enc r-cran-markdown
210s   r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-fs r-cran-usethis
210s   r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-data.table
210s   r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot
210s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
210s   x11-xserver-utils
210s The following packages will be REMOVED:
210s   libcurl4 libpsl5
210s The following NEW packages will be installed:
210s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu
210s   cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config
210s   fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-s390x-linux-gnu
210s   g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu
210s   gfortran gfortran-13 gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu
210s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libboost-dev
210s   libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
210s   libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libfreetype6
210s   libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3
210s   libharfbuzz0b libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
210s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery
210s   liblapack-dev liblapack3 liblzma-dev libmpc3 libncurses-dev libnsl-dev
210s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
210s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
210s   libpixman-1-0 libpkgconf3 libpng-dev libpsl5t64 libreadline-dev libsharpyuv0
210s   libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6
210s   libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2
210s   libxrender1 libxss1 libxt6 linux-libc-dev node-html5shiv pkg-config
210s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate
210s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics
210s   r-bioc-biocio r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings
210s   r-bioc-bsgenome r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb
210s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
210s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma
210s   r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools
210s   r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
210s   r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
210s   r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
210s   r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon
210s   r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-fansi
210s   r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger
210s   r-cran-futile.options r-cran-generics r-cran-glue r-cran-hms r-cran-httr
210s   r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle
210s   r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats
210s   r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig
210s   r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-purrr
210s   r-cran-r6 r-cran-rappdirs r-cran-rcurl r-cran-restfulr r-cran-rjson
210s   r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-snow r-cran-statmod
210s   r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble
210s   r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr
210s   r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip
210s   x11-common xdg-utils zip zlib1g-dev
210s The following packages will be upgraded:
210s   curl
210s 1 upgraded, 209 newly installed, 2 to remove and 0 not upgraded.
210s Need to get 319 MB/319 MB of archives.
210s After this operation, 1102 MB of additional disk space will be used.
210s Get:1 /tmp/autopkgtest.G1rU1j/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [796 B]
210s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB]
211s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB]
211s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB]
211s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB]
211s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB]
211s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB]
211s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB]
212s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB]
212s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB]
212s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB]
212s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB]
212s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB]
212s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB]
215s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B]
215s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B]
215s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB]
215s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB]
215s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB]
215s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB]
215s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B]
215s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB]
216s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB]
217s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB]
217s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB]
222s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB]
222s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B]
222s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B]
222s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB]
222s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB]
224s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB]
224s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B]
224s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B]
224s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
224s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB]
224s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB]
224s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
224s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
225s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB]
225s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB]
225s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB]
225s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB]
225s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB]
225s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB]
226s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB]
226s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B]
226s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B]
226s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB]
226s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB]
226s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB]
226s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB]
227s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B]
227s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB]
227s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB]
227s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB]
227s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B]
227s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB]
227s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB]
227s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB]
227s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB]
227s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB]
227s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB]
227s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB]
227s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB]
227s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB]
228s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB]
228s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB]
228s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
228s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
228s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
228s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
228s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB]
228s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB]
229s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB]
229s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB]
229s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB]
229s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB]
229s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB]
229s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB]
229s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB]
229s Get:81 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B]
229s Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB]
229s Get:83 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB]
229s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B]
229s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB]
229s Get:86 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB]
229s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB]
229s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB]
229s Get:89 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB]
229s Get:90 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB]
229s Get:91 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB]
229s Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB]
229s Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB]
229s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB]
229s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB]
229s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB]
229s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B]
229s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB]
229s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB]
229s Get:100 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
229s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB]
229s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB]
229s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B]
229s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB]
229s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB]
229s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
229s Get:107 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB]
231s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB]
231s Get:109 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B]
231s Get:110 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
231s Get:111 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB]
231s Get:112 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB]
232s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB]
233s Get:114 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB]
233s Get:115 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB]
233s Get:116 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB]
233s Get:117 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB]
233s Get:118 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB]
233s Get:119 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB]
233s Get:120 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB]
233s Get:121 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
233s Get:122 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
233s Get:123 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB]
233s Get:124 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB]
233s Get:125 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB]
233s Get:126 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB]
233s Get:127 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
233s Get:128 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB]
233s Get:129 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB]
233s Get:130 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB]
233s Get:131 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB]
233s Get:132 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB]
233s Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB]
233s Get:134 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB]
233s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB]
233s Get:136 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB]
233s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB]
233s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB]
233s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB]
233s Get:140 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
233s Get:141 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB]
233s Get:142 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB]
233s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1build1 [794 kB]
233s Get:144 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
234s Get:145 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
234s Get:146 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB]
234s Get:147 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB]
235s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
235s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
235s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB]
235s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB]
235s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB]
235s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB]
235s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
235s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB]
235s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB]
235s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
235s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB]
235s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB]
235s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB]
235s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB]
235s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB]
235s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB]
235s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB]
235s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB]
235s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB]
235s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB]
235s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB]
235s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB]
235s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB]
235s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB]
235s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
235s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
235s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB]
235s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB]
235s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B]
235s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB]
235s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB]
235s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB]
235s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB]
235s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB]
235s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB]
235s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB]
235s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB]
235s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB]
236s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-1 [1410 kB]
236s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1 [3688 kB]
236s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB]
236s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
236s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB]
236s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB]
236s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB]
236s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB]
236s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB]
236s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB]
236s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
236s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB]
236s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB]
236s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB]
236s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB]
236s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB]
236s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB]
236s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-bsgenome all 1.70.2-1 [6975 kB]
237s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-survival s390x 3.5-8-1 [6161 kB]
238s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genefilter s390x 1.84.0-1 [1124 kB]
238s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB]
238s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB]
238s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-limma s390x 3.58.1+dfsg-1 [1900 kB]
238s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB]
241s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-runit all 0.4.32-3 [283 kB]
241s Preconfiguring packages ...
241s Fetched 319 MB in 30s (10.5 MB/s)
241s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 52173 files and directories currently installed.)
241s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ...
241s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
241s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested:
241s  wget depends on libpsl5 (>= 0.16.0).
241s  libcurl4:s390x depends on libpsl5 (>= 0.16.0).
241s  libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0).
241s 
241s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 52173 files and directories currently installed.)
241s Removing libpsl5:s390x (0.21.2-1build1) ...
241s Selecting previously unselected package libpsl5t64:s390x.
241s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 52168 files and directories currently installed.)
241s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ...
241s Unpacking libpsl5t64:s390x (0.21.2-1.1) ...
241s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested:
241s  s390-tools depends on libcurl4 (>= 7.16.2).
241s 
241s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 52174 files and directories currently installed.)
241s Removing libcurl4:s390x (8.5.0-2ubuntu2) ...
241s Selecting previously unselected package libcurl4t64:s390x.
242s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 52169 files and directories currently installed.)
242s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ...
242s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ...
242s Selecting previously unselected package libc-dev-bin.
242s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ...
242s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
242s Selecting previously unselected package linux-libc-dev:s390x.
242s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ...
242s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ...
242s Selecting previously unselected package libcrypt-dev:s390x.
242s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ...
242s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ...
242s Selecting previously unselected package libtirpc-dev:s390x.
242s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ...
242s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ...
242s Selecting previously unselected package libnsl-dev:s390x.
242s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ...
242s Unpacking libnsl-dev:s390x (1.3.0-3) ...
242s Selecting previously unselected package rpcsvc-proto.
242s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ...
242s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
242s Selecting previously unselected package libc6-dev:s390x.
242s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ...
242s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ...
242s Selecting previously unselected package libisl23:s390x.
242s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ...
242s Unpacking libisl23:s390x (0.26-3) ...
242s Selecting previously unselected package libmpc3:s390x.
242s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ...
242s Unpacking libmpc3:s390x (1.3.1-1) ...
242s Selecting previously unselected package cpp-13-s390x-linux-gnu.
242s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
242s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
242s Selecting previously unselected package cpp-13.
242s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ...
242s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
242s Selecting previously unselected package cpp-s390x-linux-gnu.
242s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
242s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
242s Selecting previously unselected package cpp.
242s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ...
242s Unpacking cpp (4:13.2.0-7ubuntu1) ...
242s Selecting previously unselected package libcc1-0:s390x.
242s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ...
242s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ...
242s Selecting previously unselected package libgomp1:s390x.
242s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ...
242s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ...
242s Selecting previously unselected package libitm1:s390x.
242s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ...
242s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ...
242s Selecting previously unselected package libatomic1:s390x.
242s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ...
242s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ...
242s Selecting previously unselected package libasan8:s390x.
242s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ...
242s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ...
242s Selecting previously unselected package libubsan1:s390x.
242s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ...
242s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ...
242s Selecting previously unselected package libgcc-13-dev:s390x.
242s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ...
242s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ...
242s Selecting previously unselected package gcc-13-s390x-linux-gnu.
242s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
242s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
243s Selecting previously unselected package gcc-13.
243s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ...
243s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
243s Selecting previously unselected package gcc-s390x-linux-gnu.
243s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
243s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
243s Selecting previously unselected package gcc.
243s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ...
243s Unpacking gcc (4:13.2.0-7ubuntu1) ...
243s Selecting previously unselected package libstdc++-13-dev:s390x.
243s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ...
243s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ...
243s Selecting previously unselected package g++-13-s390x-linux-gnu.
243s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
243s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
243s Selecting previously unselected package g++-13.
243s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ...
243s Unpacking g++-13 (13.2.0-17ubuntu2) ...
243s Selecting previously unselected package g++-s390x-linux-gnu.
243s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
243s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
243s Selecting previously unselected package g++.
243s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ...
243s Unpacking g++ (4:13.2.0-7ubuntu1) ...
243s Selecting previously unselected package build-essential.
243s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ...
243s Unpacking build-essential (12.10ubuntu1) ...
243s Selecting previously unselected package dctrl-tools.
243s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ...
243s Unpacking dctrl-tools (2.24-3build2) ...
243s Selecting previously unselected package libfreetype6:s390x.
243s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ...
243s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ...
243s Selecting previously unselected package fonts-dejavu-mono.
243s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ...
243s Unpacking fonts-dejavu-mono (2.37-8) ...
243s Selecting previously unselected package fonts-dejavu-core.
243s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ...
243s Unpacking fonts-dejavu-core (2.37-8) ...
243s Selecting previously unselected package fontconfig-config.
243s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ...
244s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
244s Selecting previously unselected package libfontconfig1:s390x.
244s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ...
244s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ...
244s Selecting previously unselected package fontconfig.
244s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ...
244s Unpacking fontconfig (2.15.0-1ubuntu1) ...
244s Selecting previously unselected package libgfortran5:s390x.
244s Preparing to unpack .../038-libgfortran5_14-20240303-1ubuntu1_s390x.deb ...
244s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ...
244s Selecting previously unselected package libgfortran-13-dev:s390x.
244s Preparing to unpack .../039-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ...
244s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ...
244s Selecting previously unselected package gfortran-13-s390x-linux-gnu.
244s Preparing to unpack .../040-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
244s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
244s Selecting previously unselected package gfortran-13.
244s Preparing to unpack .../041-gfortran-13_13.2.0-17ubuntu2_s390x.deb ...
244s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
244s Selecting previously unselected package gfortran-s390x-linux-gnu.
244s Preparing to unpack .../042-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
244s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
244s Selecting previously unselected package gfortran.
244s Preparing to unpack .../043-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ...
244s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
244s Selecting previously unselected package icu-devtools.
244s Preparing to unpack .../044-icu-devtools_74.2-1ubuntu1_s390x.deb ...
244s Unpacking icu-devtools (74.2-1ubuntu1) ...
244s Selecting previously unselected package libblas3:s390x.
244s Preparing to unpack .../045-libblas3_3.12.0-3_s390x.deb ...
244s Unpacking libblas3:s390x (3.12.0-3) ...
244s Selecting previously unselected package libblas-dev:s390x.
244s Preparing to unpack .../046-libblas-dev_3.12.0-3_s390x.deb ...
244s Unpacking libblas-dev:s390x (3.12.0-3) ...
244s Selecting previously unselected package libboost1.83-dev:s390x.
244s Preparing to unpack .../047-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ...
244s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ...
246s Selecting previously unselected package libboost-dev:s390x.
246s Preparing to unpack .../048-libboost-dev_1.83.0.1ubuntu2_s390x.deb ...
246s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ...
246s Selecting previously unselected package libbz2-dev:s390x.
246s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ...
246s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ...
246s Selecting previously unselected package libpixman-1-0:s390x.
246s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_s390x.deb ...
246s Unpacking libpixman-1-0:s390x (0.42.2-1) ...
246s Selecting previously unselected package libxcb-render0:s390x.
246s Preparing to unpack .../051-libxcb-render0_1.15-1_s390x.deb ...
246s Unpacking libxcb-render0:s390x (1.15-1) ...
246s Selecting previously unselected package libxcb-shm0:s390x.
246s Preparing to unpack .../052-libxcb-shm0_1.15-1_s390x.deb ...
246s Unpacking libxcb-shm0:s390x (1.15-1) ...
246s Selecting previously unselected package libxrender1:s390x.
246s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_s390x.deb ...
246s Unpacking libxrender1:s390x (1:0.9.10-1.1) ...
246s Selecting previously unselected package libcairo2:s390x.
246s Preparing to unpack .../054-libcairo2_1.18.0-1_s390x.deb ...
246s Unpacking libcairo2:s390x (1.18.0-1) ...
246s Selecting previously unselected package libdatrie1:s390x.
246s Preparing to unpack .../055-libdatrie1_0.2.13-3_s390x.deb ...
246s Unpacking libdatrie1:s390x (0.2.13-3) ...
246s Selecting previously unselected package libdeflate0:s390x.
246s Preparing to unpack .../056-libdeflate0_1.19-1_s390x.deb ...
246s Unpacking libdeflate0:s390x (1.19-1) ...
246s Selecting previously unselected package libgraphite2-3:s390x.
246s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_s390x.deb ...
246s Unpacking libgraphite2-3:s390x (1.3.14-2) ...
246s Selecting previously unselected package libharfbuzz0b:s390x.
246s Preparing to unpack .../058-libharfbuzz0b_8.3.0-2_s390x.deb ...
246s Unpacking libharfbuzz0b:s390x (8.3.0-2) ...
246s Selecting previously unselected package x11-common.
246s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu2_all.deb ...
246s Unpacking x11-common (1:7.7+23ubuntu2) ...
246s Selecting previously unselected package libice6:s390x.
246s Preparing to unpack .../060-libice6_2%3a1.0.10-1build2_s390x.deb ...
246s Unpacking libice6:s390x (2:1.0.10-1build2) ...
246s Selecting previously unselected package libicu-dev:s390x.
246s Preparing to unpack .../061-libicu-dev_74.2-1ubuntu1_s390x.deb ...
246s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ...
247s Selecting previously unselected package libjpeg-turbo8:s390x.
247s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ...
247s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ...
247s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
247s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ...
247s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ...
247s Selecting previously unselected package libjpeg8:s390x.
247s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_s390x.deb ...
247s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
247s Selecting previously unselected package libjpeg8-dev:s390x.
247s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
247s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
247s Selecting previously unselected package libjpeg-dev:s390x.
247s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
247s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
247s Selecting previously unselected package libjs-jquery.
247s Preparing to unpack .../067-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
247s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
247s Selecting previously unselected package liblapack3:s390x.
247s Preparing to unpack .../068-liblapack3_3.12.0-3_s390x.deb ...
247s Unpacking liblapack3:s390x (3.12.0-3) ...
247s Selecting previously unselected package liblapack-dev:s390x.
247s Preparing to unpack .../069-liblapack-dev_3.12.0-3_s390x.deb ...
247s Unpacking liblapack-dev:s390x (3.12.0-3) ...
247s Selecting previously unselected package libncurses-dev:s390x.
247s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_s390x.deb ...
247s Unpacking libncurses-dev:s390x (6.4+20240113-1ubuntu1) ...
247s Selecting previously unselected package libthai-data.
247s Preparing to unpack .../071-libthai-data_0.1.29-2_all.deb ...
247s Unpacking libthai-data (0.1.29-2) ...
247s Selecting previously unselected package libthai0:s390x.
247s Preparing to unpack .../072-libthai0_0.1.29-2_s390x.deb ...
247s Unpacking libthai0:s390x (0.1.29-2) ...
247s Selecting previously unselected package libpango-1.0-0:s390x.
247s Preparing to unpack .../073-libpango-1.0-0_1.51.0+ds-4_s390x.deb ...
247s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ...
247s Selecting previously unselected package libpangoft2-1.0-0:s390x.
247s Preparing to unpack .../074-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ...
247s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ...
247s Selecting previously unselected package libpangocairo-1.0-0:s390x.
247s Preparing to unpack .../075-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ...
247s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ...
247s Selecting previously unselected package libpaper1:s390x.
247s Preparing to unpack .../076-libpaper1_1.1.29_s390x.deb ...
247s Unpacking libpaper1:s390x (1.1.29) ...
247s Selecting previously unselected package libpaper-utils.
247s Preparing to unpack .../077-libpaper-utils_1.1.29_s390x.deb ...
247s Unpacking libpaper-utils (1.1.29) ...
247s Selecting previously unselected package libpcre2-16-0:s390x.
247s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ...
247s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ...
247s Selecting previously unselected package libpcre2-32-0:s390x.
247s Preparing to unpack .../079-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ...
247s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ...
247s Selecting previously unselected package libpcre2-posix3:s390x.
247s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_s390x.deb ...
247s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ...
247s Selecting previously unselected package libpcre2-dev:s390x.
247s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_s390x.deb ...
247s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ...
248s Selecting previously unselected package libpkgconf3:s390x.
248s Preparing to unpack .../082-libpkgconf3_1.8.1-2_s390x.deb ...
248s Unpacking libpkgconf3:s390x (1.8.1-2) ...
248s Selecting previously unselected package zlib1g-dev:s390x.
248s Preparing to unpack .../083-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ...
248s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ...
248s Selecting previously unselected package libpng-dev:s390x.
248s Preparing to unpack .../084-libpng-dev_1.6.43-1_s390x.deb ...
248s Unpacking libpng-dev:s390x (1.6.43-1) ...
248s Selecting previously unselected package libreadline-dev:s390x.
248s Preparing to unpack .../085-libreadline-dev_8.2-3_s390x.deb ...
248s Unpacking libreadline-dev:s390x (8.2-3) ...
248s Selecting previously unselected package libsharpyuv0:s390x.
248s Preparing to unpack .../086-libsharpyuv0_1.3.2-0.4_s390x.deb ...
248s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ...
248s Selecting previously unselected package libsm6:s390x.
248s Preparing to unpack .../087-libsm6_2%3a1.2.3-1build2_s390x.deb ...
248s Unpacking libsm6:s390x (2:1.2.3-1build2) ...
248s Selecting previously unselected package libtcl8.6:s390x.
248s Preparing to unpack .../088-libtcl8.6_8.6.13+dfsg-2_s390x.deb ...
248s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ...
248s Selecting previously unselected package libjbig0:s390x.
248s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu1_s390x.deb ...
248s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ...
248s Selecting previously unselected package libwebp7:s390x.
248s Preparing to unpack .../090-libwebp7_1.3.2-0.4_s390x.deb ...
248s Unpacking libwebp7:s390x (1.3.2-0.4) ...
248s Selecting previously unselected package libtiff6:s390x.
248s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ...
248s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ...
248s Selecting previously unselected package libxft2:s390x.
248s Preparing to unpack .../092-libxft2_2.3.6-1_s390x.deb ...
248s Unpacking libxft2:s390x (2.3.6-1) ...
248s Selecting previously unselected package libxss1:s390x.
248s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_s390x.deb ...
248s Unpacking libxss1:s390x (1:1.2.3-1build2) ...
248s Selecting previously unselected package libtk8.6:s390x.
248s Preparing to unpack .../094-libtk8.6_8.6.13-2_s390x.deb ...
248s Unpacking libtk8.6:s390x (8.6.13-2) ...
248s Selecting previously unselected package libxt6:s390x.
248s Preparing to unpack .../095-libxt6_1%3a1.2.1-1.1_s390x.deb ...
248s Unpacking libxt6:s390x (1:1.2.1-1.1) ...
248s Selecting previously unselected package node-html5shiv.
248s Preparing to unpack .../096-node-html5shiv_3.7.3+dfsg-5_all.deb ...
248s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
248s Selecting previously unselected package pkgconf-bin.
248s Preparing to unpack .../097-pkgconf-bin_1.8.1-2_s390x.deb ...
248s Unpacking pkgconf-bin (1.8.1-2) ...
248s Selecting previously unselected package pkgconf:s390x.
248s Preparing to unpack .../098-pkgconf_1.8.1-2_s390x.deb ...
248s Unpacking pkgconf:s390x (1.8.1-2) ...
248s Selecting previously unselected package pkg-config:s390x.
248s Preparing to unpack .../099-pkg-config_1.8.1-2_s390x.deb ...
248s Unpacking pkg-config:s390x (1.8.1-2) ...
248s Selecting previously unselected package zip.
248s Preparing to unpack .../100-zip_3.0-13_s390x.deb ...
248s Unpacking zip (3.0-13) ...
248s Selecting previously unselected package unzip.
248s Preparing to unpack .../101-unzip_6.0-28ubuntu3_s390x.deb ...
248s Unpacking unzip (6.0-28ubuntu3) ...
248s Selecting previously unselected package xdg-utils.
248s Preparing to unpack .../102-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
248s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
248s Selecting previously unselected package r-base-core.
248s Preparing to unpack .../103-r-base-core_4.3.2-1build1_s390x.deb ...
248s Unpacking r-base-core (4.3.2-1build1) ...
248s Selecting previously unselected package liblzma-dev:s390x.
248s Preparing to unpack .../104-liblzma-dev_5.4.5-0.3_s390x.deb ...
248s Unpacking liblzma-dev:s390x (5.4.5-0.3) ...
248s Selecting previously unselected package r-base-dev.
248s Preparing to unpack .../105-r-base-dev_4.3.2-1build1_all.deb ...
248s Unpacking r-base-dev (4.3.2-1build1) ...
248s Selecting previously unselected package pkg-r-autopkgtest.
248s Preparing to unpack .../106-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
248s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
248s Selecting previously unselected package r-bioc-biocgenerics.
248s Preparing to unpack .../107-r-bioc-biocgenerics_0.48.1-2_all.deb ...
248s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
248s Selecting previously unselected package r-bioc-biobase.
248s Preparing to unpack .../108-r-bioc-biobase_2.62.0-1_s390x.deb ...
248s Unpacking r-bioc-biobase (2.62.0-1) ...
248s Selecting previously unselected package r-bioc-s4vectors.
248s Preparing to unpack .../109-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ...
248s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
248s Selecting previously unselected package r-bioc-iranges.
248s Preparing to unpack .../110-r-bioc-iranges_2.36.0-1_s390x.deb ...
248s Unpacking r-bioc-iranges (2.36.0-1) ...
249s Selecting previously unselected package r-cran-dbi.
249s Preparing to unpack .../111-r-cran-dbi_1.2.2-1_all.deb ...
249s Unpacking r-cran-dbi (1.2.2-1) ...
249s Selecting previously unselected package r-cran-bit.
249s Preparing to unpack .../112-r-cran-bit_4.0.5-1_s390x.deb ...
249s Unpacking r-cran-bit (4.0.5-1) ...
249s Selecting previously unselected package r-cran-bit64.
249s Preparing to unpack .../113-r-cran-bit64_4.0.5-1_s390x.deb ...
249s Unpacking r-cran-bit64 (4.0.5-1) ...
249s Selecting previously unselected package r-cran-rlang.
249s Preparing to unpack .../114-r-cran-rlang_1.1.3-1_s390x.deb ...
249s Unpacking r-cran-rlang (1.1.3-1) ...
249s Selecting previously unselected package r-cran-cli.
249s Preparing to unpack .../115-r-cran-cli_3.6.2-1_s390x.deb ...
249s Unpacking r-cran-cli (3.6.2-1) ...
249s Selecting previously unselected package r-cran-glue.
249s Preparing to unpack .../116-r-cran-glue_1.7.0-1_s390x.deb ...
249s Unpacking r-cran-glue (1.7.0-1) ...
249s Selecting previously unselected package r-cran-lifecycle.
249s Preparing to unpack .../117-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
249s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
249s Selecting previously unselected package r-cran-vctrs.
249s Preparing to unpack .../118-r-cran-vctrs_0.6.5-1_s390x.deb ...
249s Unpacking r-cran-vctrs (0.6.5-1) ...
249s Selecting previously unselected package r-cran-blob.
249s Preparing to unpack .../119-r-cran-blob_1.2.4-1_all.deb ...
249s Unpacking r-cran-blob (1.2.4-1) ...
249s Selecting previously unselected package r-cran-fastmap.
249s Preparing to unpack .../120-r-cran-fastmap_1.1.1-1_s390x.deb ...
249s Unpacking r-cran-fastmap (1.1.1-1) ...
249s Selecting previously unselected package r-cran-cachem.
249s Preparing to unpack .../121-r-cran-cachem_1.0.8-1_s390x.deb ...
249s Unpacking r-cran-cachem (1.0.8-1) ...
249s Selecting previously unselected package r-cran-memoise.
249s Preparing to unpack .../122-r-cran-memoise_2.0.1-1_all.deb ...
249s Unpacking r-cran-memoise (2.0.1-1) ...
249s Selecting previously unselected package r-cran-pkgconfig.
249s Preparing to unpack .../123-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
249s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
249s Selecting previously unselected package r-cran-plogr.
249s Preparing to unpack .../124-r-cran-plogr_0.2.0-3build1_all.deb ...
249s Unpacking r-cran-plogr (0.2.0-3build1) ...
249s Selecting previously unselected package r-cran-cpp11.
249s Preparing to unpack .../125-r-cran-cpp11_0.4.7-1_all.deb ...
249s Unpacking r-cran-cpp11 (0.4.7-1) ...
249s Selecting previously unselected package r-cran-rsqlite.
249s Preparing to unpack .../126-r-cran-rsqlite_2.3.4-1_s390x.deb ...
249s Unpacking r-cran-rsqlite (2.3.4-1) ...
249s Selecting previously unselected package r-cran-curl.
249s Preparing to unpack .../127-r-cran-curl_5.2.0+dfsg-1_s390x.deb ...
249s Unpacking r-cran-curl (5.2.0+dfsg-1) ...
249s Selecting previously unselected package r-cran-jsonlite.
249s Preparing to unpack .../128-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ...
249s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
249s Selecting previously unselected package r-cran-mime.
249s Preparing to unpack .../129-r-cran-mime_0.12-1_s390x.deb ...
249s Unpacking r-cran-mime (0.12-1) ...
249s Selecting previously unselected package r-cran-sys.
249s Preparing to unpack .../130-r-cran-sys_3.4.2-1_s390x.deb ...
249s Unpacking r-cran-sys (3.4.2-1) ...
249s Selecting previously unselected package r-cran-askpass.
249s Preparing to unpack .../131-r-cran-askpass_1.2.0-1_s390x.deb ...
249s Unpacking r-cran-askpass (1.2.0-1) ...
249s Selecting previously unselected package r-cran-openssl.
249s Preparing to unpack .../132-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ...
249s Unpacking r-cran-openssl (2.1.1+dfsg-2) ...
249s Selecting previously unselected package r-cran-r6.
249s Preparing to unpack .../133-r-cran-r6_2.5.1-1_all.deb ...
249s Unpacking r-cran-r6 (2.5.1-1) ...
249s Selecting previously unselected package r-cran-httr.
249s Preparing to unpack .../134-r-cran-httr_1.4.7+dfsg-1_all.deb ...
249s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
249s Selecting previously unselected package r-cran-png.
249s Preparing to unpack .../135-r-cran-png_0.1-8-1_s390x.deb ...
249s Unpacking r-cran-png (0.1-8-1) ...
249s Selecting previously unselected package r-bioc-zlibbioc.
249s Preparing to unpack .../136-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
249s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
249s Selecting previously unselected package r-bioc-xvector.
249s Preparing to unpack .../137-r-bioc-xvector_0.42.0-1_s390x.deb ...
249s Unpacking r-bioc-xvector (0.42.0-1) ...
249s Selecting previously unselected package r-cran-bitops.
249s Preparing to unpack .../138-r-cran-bitops_1.0-7-1_s390x.deb ...
249s Unpacking r-cran-bitops (1.0-7-1) ...
249s Selecting previously unselected package r-cran-rcurl.
249s Preparing to unpack .../139-r-cran-rcurl_1.98-1.14+dfsg-1build1_s390x.deb ...
249s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1build1) ...
249s Selecting previously unselected package r-bioc-genomeinfodbdata.
249s Preparing to unpack .../140-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
249s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
249s Selecting previously unselected package r-bioc-genomeinfodb.
249s Preparing to unpack .../141-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
249s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
249s Selecting previously unselected package r-cran-crayon.
249s Preparing to unpack .../142-r-cran-crayon_1.5.2-1_all.deb ...
249s Unpacking r-cran-crayon (1.5.2-1) ...
249s Selecting previously unselected package r-bioc-biostrings.
249s Preparing to unpack .../143-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ...
249s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
250s Selecting previously unselected package r-bioc-keggrest.
250s Preparing to unpack .../144-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ...
250s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ...
250s Selecting previously unselected package r-bioc-annotationdbi.
250s Preparing to unpack .../145-r-bioc-annotationdbi_1.64.1-1_all.deb ...
250s Unpacking r-bioc-annotationdbi (1.64.1-1) ...
250s Selecting previously unselected package r-cran-xml.
250s Preparing to unpack .../146-r-cran-xml_3.99-0.16.1-1_s390x.deb ...
250s Unpacking r-cran-xml (3.99-0.16.1-1) ...
250s Selecting previously unselected package r-cran-xtable.
250s Preparing to unpack .../147-r-cran-xtable_1%3a1.8-4-2_all.deb ...
250s Unpacking r-cran-xtable (1:1.8-4-2) ...
250s Selecting previously unselected package r-bioc-annotate.
250s Preparing to unpack .../148-r-bioc-annotate_1.80.0+dfsg-1_all.deb ...
250s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ...
250s Selecting previously unselected package r-cran-generics.
250s Preparing to unpack .../149-r-cran-generics_0.1.3-1_all.deb ...
250s Unpacking r-cran-generics (0.1.3-1) ...
250s Selecting previously unselected package r-cran-magrittr.
250s Preparing to unpack .../150-r-cran-magrittr_2.0.3-1_s390x.deb ...
250s Unpacking r-cran-magrittr (2.0.3-1) ...
250s Selecting previously unselected package r-cran-fansi.
250s Preparing to unpack .../151-r-cran-fansi_1.0.5-1_s390x.deb ...
250s Unpacking r-cran-fansi (1.0.5-1) ...
250s Selecting previously unselected package r-cran-utf8.
250s Preparing to unpack .../152-r-cran-utf8_1.2.4-1_s390x.deb ...
250s Unpacking r-cran-utf8 (1.2.4-1) ...
250s Selecting previously unselected package r-cran-pillar.
250s Preparing to unpack .../153-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
250s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
250s Selecting previously unselected package r-cran-tibble.
250s Preparing to unpack .../154-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ...
250s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
250s Selecting previously unselected package r-cran-withr.
250s Preparing to unpack .../155-r-cran-withr_2.5.0-1_all.deb ...
250s Unpacking r-cran-withr (2.5.0-1) ...
250s Selecting previously unselected package r-cran-tidyselect.
250s Preparing to unpack .../156-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ...
250s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
250s Selecting previously unselected package r-cran-dplyr.
250s Preparing to unpack .../157-r-cran-dplyr_1.1.4-1_s390x.deb ...
250s Unpacking r-cran-dplyr (1.1.4-1) ...
250s Selecting previously unselected package r-cran-purrr.
250s Preparing to unpack .../158-r-cran-purrr_1.0.2-1_s390x.deb ...
250s Unpacking r-cran-purrr (1.0.2-1) ...
250s Selecting previously unselected package r-cran-stringi.
250s Preparing to unpack .../159-r-cran-stringi_1.8.3-1_s390x.deb ...
250s Unpacking r-cran-stringi (1.8.3-1) ...
250s Selecting previously unselected package r-cran-stringr.
250s Preparing to unpack .../160-r-cran-stringr_1.5.1-1_all.deb ...
250s Unpacking r-cran-stringr (1.5.1-1) ...
250s Selecting previously unselected package r-cran-tidyr.
250s Preparing to unpack .../161-r-cran-tidyr_1.3.1-1_s390x.deb ...
250s Unpacking r-cran-tidyr (1.3.1-1) ...
250s Selecting previously unselected package r-cran-dbplyr.
250s Preparing to unpack .../162-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ...
250s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ...
250s Selecting previously unselected package r-cran-filelock.
250s Preparing to unpack .../163-r-cran-filelock_1.0.3-1_s390x.deb ...
250s Unpacking r-cran-filelock (1.0.3-1) ...
250s Selecting previously unselected package r-bioc-biocfilecache.
250s Preparing to unpack .../164-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ...
250s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ...
250s Selecting previously unselected package r-bioc-biocio.
250s Preparing to unpack .../165-r-bioc-biocio_1.12.0+dfsg-1_all.deb ...
250s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ...
250s Selecting previously unselected package r-cran-formatr.
250s Preparing to unpack .../166-r-cran-formatr_1.14-1_all.deb ...
250s Unpacking r-cran-formatr (1.14-1) ...
250s Selecting previously unselected package r-cran-lambda.r.
250s Preparing to unpack .../167-r-cran-lambda.r_1.2.4-2build1_all.deb ...
250s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
250s Selecting previously unselected package r-cran-futile.options.
250s Preparing to unpack .../168-r-cran-futile.options_1.0.1-3build1_all.deb ...
250s Unpacking r-cran-futile.options (1.0.1-3build1) ...
250s Selecting previously unselected package r-cran-futile.logger.
250s Preparing to unpack .../169-r-cran-futile.logger_1.4.3-4build1_all.deb ...
250s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
250s Selecting previously unselected package r-cran-snow.
250s Preparing to unpack .../170-r-cran-snow_1%3a0.4.4-2_all.deb ...
250s Unpacking r-cran-snow (1:0.4.4-2) ...
250s Selecting previously unselected package r-cran-codetools.
250s Preparing to unpack .../171-r-cran-codetools_0.2-19-1_all.deb ...
250s Unpacking r-cran-codetools (0.2-19-1) ...
250s Selecting previously unselected package r-cran-bh.
250s Preparing to unpack .../172-r-cran-bh_1.84.0-1_all.deb ...
250s Unpacking r-cran-bh (1.84.0-1) ...
250s Selecting previously unselected package r-bioc-biocparallel.
250s Preparing to unpack .../173-r-bioc-biocparallel_1.36.0-1_s390x.deb ...
250s Unpacking r-bioc-biocparallel (1.36.0-1) ...
251s Selecting previously unselected package r-cran-hms.
251s Preparing to unpack .../174-r-cran-hms_1.1.3-1_all.deb ...
251s Unpacking r-cran-hms (1.1.3-1) ...
251s Selecting previously unselected package r-cran-prettyunits.
251s Preparing to unpack .../175-r-cran-prettyunits_1.2.0-1_all.deb ...
251s Unpacking r-cran-prettyunits (1.2.0-1) ...
251s Selecting previously unselected package r-cran-progress.
251s Preparing to unpack .../176-r-cran-progress_1.2.3-1_all.deb ...
251s Unpacking r-cran-progress (1.2.3-1) ...
251s Selecting previously unselected package r-cran-digest.
251s Preparing to unpack .../177-r-cran-digest_0.6.34-1_s390x.deb ...
251s Unpacking r-cran-digest (0.6.34-1) ...
251s Selecting previously unselected package r-cran-rappdirs.
251s Preparing to unpack .../178-r-cran-rappdirs_0.3.3-1_s390x.deb ...
251s Unpacking r-cran-rappdirs (0.3.3-1) ...
251s Selecting previously unselected package r-cran-xml2.
251s Preparing to unpack .../179-r-cran-xml2_1.3.6-1_s390x.deb ...
251s Unpacking r-cran-xml2 (1.3.6-1) ...
251s Selecting previously unselected package r-bioc-biomart.
251s Preparing to unpack .../180-r-bioc-biomart_2.58.2+dfsg-1_all.deb ...
251s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ...
251s Selecting previously unselected package r-bioc-genomicranges.
251s Preparing to unpack .../181-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ...
251s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ...
251s Selecting previously unselected package r-bioc-rhtslib.
251s Preparing to unpack .../182-r-bioc-rhtslib_2.4.1+dfsg-1_s390x.deb ...
251s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ...
251s Selecting previously unselected package r-bioc-rsamtools.
251s Preparing to unpack .../183-r-bioc-rsamtools_2.18.0+dfsg-1_s390x.deb ...
251s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ...
251s Selecting previously unselected package r-cran-matrixstats.
251s Preparing to unpack .../184-r-cran-matrixstats_1.2.0-1_s390x.deb ...
251s Unpacking r-cran-matrixstats (1.2.0-1) ...
251s Selecting previously unselected package r-bioc-matrixgenerics.
251s Preparing to unpack .../185-r-bioc-matrixgenerics_1.14.0-1_all.deb ...
251s Unpacking r-bioc-matrixgenerics (1.14.0-1) ...
251s Selecting previously unselected package r-cran-lattice.
251s Preparing to unpack .../186-r-cran-lattice_0.22-5-1_s390x.deb ...
251s Unpacking r-cran-lattice (0.22-5-1) ...
251s Selecting previously unselected package r-cran-matrix.
251s Preparing to unpack .../187-r-cran-matrix_1.6-5-1_s390x.deb ...
251s Unpacking r-cran-matrix (1.6-5-1) ...
251s Selecting previously unselected package r-cran-abind.
251s Preparing to unpack .../188-r-cran-abind_1.4-5-2_all.deb ...
251s Unpacking r-cran-abind (1.4-5-2) ...
251s Selecting previously unselected package r-bioc-s4arrays.
251s Preparing to unpack .../189-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ...
251s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ...
251s Selecting previously unselected package r-bioc-sparsearray.
251s Preparing to unpack .../190-r-bioc-sparsearray_1.2.4+dfsg-1_s390x.deb ...
251s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ...
251s Selecting previously unselected package r-bioc-delayedarray.
251s Preparing to unpack .../191-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ...
251s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ...
251s Selecting previously unselected package r-bioc-summarizedexperiment.
251s Preparing to unpack .../192-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ...
251s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
251s Selecting previously unselected package r-bioc-genomicalignments.
251s Preparing to unpack .../193-r-bioc-genomicalignments_1.38.2-1_s390x.deb ...
251s Unpacking r-bioc-genomicalignments (1.38.2-1) ...
251s Selecting previously unselected package r-cran-littler.
251s Preparing to unpack .../194-r-cran-littler_0.3.19-1_s390x.deb ...
251s Unpacking r-cran-littler (0.3.19-1) ...
251s Selecting previously unselected package r-cran-rjson.
251s Preparing to unpack .../195-r-cran-rjson_0.2.21-1_s390x.deb ...
251s Unpacking r-cran-rjson (0.2.21-1) ...
251s Selecting previously unselected package r-cran-yaml.
251s Preparing to unpack .../196-r-cran-yaml_2.3.8-1_s390x.deb ...
251s Unpacking r-cran-yaml (2.3.8-1) ...
251s Selecting previously unselected package r-cran-restfulr.
251s Preparing to unpack .../197-r-cran-restfulr_0.0.15-1_s390x.deb ...
251s Unpacking r-cran-restfulr (0.0.15-1) ...
251s Selecting previously unselected package r-bioc-rtracklayer.
251s Preparing to unpack .../198-r-bioc-rtracklayer_1.62.0-1_s390x.deb ...
251s Unpacking r-bioc-rtracklayer (1.62.0-1) ...
251s Selecting previously unselected package r-bioc-bsgenome.
251s Preparing to unpack .../199-r-bioc-bsgenome_1.70.2-1_all.deb ...
251s Unpacking r-bioc-bsgenome (1.70.2-1) ...
251s Selecting previously unselected package r-cran-survival.
251s Preparing to unpack .../200-r-cran-survival_3.5-8-1_s390x.deb ...
251s Unpacking r-cran-survival (3.5-8-1) ...
251s Selecting previously unselected package r-bioc-genefilter.
251s Preparing to unpack .../201-r-bioc-genefilter_1.84.0-1_s390x.deb ...
251s Unpacking r-bioc-genefilter (1.84.0-1) ...
252s Selecting previously unselected package r-bioc-genomicfeatures.
252s Preparing to unpack .../202-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ...
252s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ...
252s Selecting previously unselected package r-cran-statmod.
252s Preparing to unpack .../203-r-cran-statmod_1.5.0-1_s390x.deb ...
252s Unpacking r-cran-statmod (1.5.0-1) ...
252s Selecting previously unselected package r-bioc-limma.
252s Preparing to unpack .../204-r-bioc-limma_3.58.1+dfsg-1_s390x.deb ...
252s Unpacking r-bioc-limma (3.58.1+dfsg-1) ...
252s Selecting previously unselected package r-bioc-org.hs.eg.db.
252s Preparing to unpack .../205-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ...
252s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ...
254s Selecting previously unselected package r-cran-runit.
254s Preparing to unpack .../206-r-cran-runit_0.4.32-3_all.deb ...
254s Unpacking r-cran-runit (0.4.32-3) ...
254s Selecting previously unselected package autopkgtest-satdep.
254s Preparing to unpack .../207-1-autopkgtest-satdep.deb ...
254s Unpacking autopkgtest-satdep (0) ...
254s Setting up libgraphite2-3:s390x (1.3.14-2) ...
254s Setting up libpixman-1-0:s390x (0.42.2-1) ...
254s Setting up libsharpyuv0:s390x (1.3.2-0.4) ...
254s Setting up libpaper1:s390x (1.1.29) ...
254s 
254s Creating config file /etc/papersize with new version
254s Setting up libxrender1:s390x (1:0.9.10-1.1) ...
254s Setting up libdatrie1:s390x (0.2.13-3) ...
254s Setting up libxcb-render0:s390x (1.15-1) ...
254s Setting up unzip (6.0-28ubuntu3) ...
254s Setting up x11-common (1:7.7+23ubuntu2) ...
255s Setting up node-html5shiv (3.7.3+dfsg-5) ...
255s Setting up libpsl5t64:s390x (0.21.2-1.1) ...
255s Setting up libdeflate0:s390x (1.19-1) ...
255s Setting up linux-libc-dev:s390x (6.8.0-11.11) ...
255s Setting up libxcb-shm0:s390x (1.15-1) ...
255s Setting up libpaper-utils (1.1.29) ...
255s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ...
255s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ...
255s Setting up libpcre2-16-0:s390x (10.42-4ubuntu1) ...
255s Setting up zip (3.0-13) ...
255s Setting up libpcre2-32-0:s390x (10.42-4ubuntu1) ...
255s Setting up libblas3:s390x (3.12.0-3) ...
255s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
255s Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ...
255s Setting up libpkgconf3:s390x (1.8.1-2) ...
255s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
255s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ...
255s Setting up fonts-dejavu-mono (2.37-8) ...
255s Setting up libmpc3:s390x (1.3.1-1) ...
255s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ...
255s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ...
255s Setting up icu-devtools (74.2-1ubuntu1) ...
255s Setting up fonts-dejavu-core (2.37-8) ...
255s Setting up pkgconf-bin (1.8.1-2) ...
255s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ...
255s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ...
255s Setting up libwebp7:s390x (1.3.2-0.4) ...
255s Setting up liblzma-dev:s390x (5.4.5-0.3) ...
255s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ...
255s Setting up libpcre2-posix3:s390x (10.42-4ubuntu1) ...
255s Setting up libnsl-dev:s390x (1.3.0-3) ...
255s Setting up libcrypt-dev:s390x (1:4.4.36-4) ...
255s Setting up libasan8:s390x (14-20240303-1ubuntu1) ...
255s Setting up libharfbuzz0b:s390x (8.3.0-2) ...
255s Setting up libthai-data (0.1.29-2) ...
255s Setting up libxss1:s390x (1:1.2.3-1build2) ...
255s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
255s Setting up libisl23:s390x (0.26-3) ...
255s Setting up libc-dev-bin (2.39-0ubuntu2) ...
255s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
255s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
255s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ...
255s Setting up libblas-dev:s390x (3.12.0-3) ...
255s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
255s Setting up dctrl-tools (2.24-3build2) ...
255s Setting up libitm1:s390x (14-20240303-1ubuntu1) ...
255s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
255s Setting up libice6:s390x (2:1.0.10-1build2) ...
255s Setting up liblapack3:s390x (3.12.0-3) ...
255s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
255s Setting up libcurl4t64:s390x (8.5.0-2ubuntu7) ...
255s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
255s Setting up pkgconf:s390x (1.8.1-2) ...
255s Setting up libthai0:s390x (0.1.29-2) ...
255s Setting up cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
255s Setting up liblapack-dev:s390x (3.12.0-3) ...
255s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
255s Setting up pkg-config:s390x (1.8.1-2) ...
255s Setting up libgcc-13-dev:s390x (13.2.0-17ubuntu2) ...
255s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ...
255s Setting up libc6-dev:s390x (2.39-0ubuntu2) ...
255s Setting up curl (8.5.0-2ubuntu7) ...
255s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ...
255s Setting up libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ...
255s Setting up libsm6:s390x (2:1.2.3-1build2) ...
255s Setting up libicu-dev:s390x (74.2-1ubuntu1) ...
255s Setting up libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ...
255s Setting up libbz2-dev:s390x (1.0.8-5ubuntu1) ...
255s Setting up fontconfig (2.15.0-1ubuntu1) ...
257s Regenerating fonts cache... done.
257s Setting up libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ...
257s Setting up libxft2:s390x (2.3.6-1) ...
257s Setting up libboost1.83-dev:s390x (1.83.0-2ubuntu1) ...
257s Setting up libncurses-dev:s390x (6.4+20240113-1ubuntu1) ...
257s Setting up libpcre2-dev:s390x (10.42-4ubuntu1) ...
257s Setting up cpp-13 (13.2.0-17ubuntu2) ...
257s Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
257s Setting up libtk8.6:s390x (8.6.13-2) ...
257s Setting up libpango-1.0-0:s390x (1.51.0+ds-4) ...
257s Setting up libreadline-dev:s390x (8.2-3) ...
257s Setting up libcairo2:s390x (1.18.0-1) ...
257s Setting up gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
257s Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
257s Setting up g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
257s Setting up gcc-13 (13.2.0-17ubuntu2) ...
257s Setting up libxt6:s390x (1:1.2.1-1.1) ...
257s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ...
257s Setting up cpp (4:13.2.0-7ubuntu1) ...
257s Setting up gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
257s Setting up libboost-dev:s390x (1.83.0.1ubuntu2) ...
257s Setting up libpangoft2-1.0-0:s390x (1.51.0+ds-4) ...
257s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
257s Setting up libpangocairo-1.0-0:s390x (1.51.0+ds-4) ...
257s Setting up g++-13 (13.2.0-17ubuntu2) ...
257s Setting up gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
257s Setting up libpng-dev:s390x (1.6.43-1) ...
257s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
257s Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
257s Setting up gcc (4:13.2.0-7ubuntu1) ...
257s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
257s Setting up r-base-core (4.3.2-1build1) ...
257s 
257s Creating config file /etc/R/Renviron with new version
257s Setting up r-cran-crayon (1.5.2-1) ...
257s Setting up r-cran-futile.options (1.0.1-3build1) ...
257s Setting up r-cran-lattice (0.22-5-1) ...
257s Setting up r-cran-formatr (1.14-1) ...
257s Setting up r-cran-xml (3.99-0.16.1-1) ...
257s Setting up g++ (4:13.2.0-7ubuntu1) ...
257s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
257s Setting up r-cran-statmod (1.5.0-1) ...
257s Setting up build-essential (12.10ubuntu1) ...
257s Setting up r-cran-r6 (2.5.1-1) ...
257s Setting up r-cran-magrittr (2.0.3-1) ...
257s Setting up r-cran-rappdirs (0.3.3-1) ...
257s Setting up r-cran-filelock (1.0.3-1) ...
257s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
257s Setting up r-cran-littler (0.3.19-1) ...
257s Setting up r-cran-bh (1.84.0-1) ...
257s Setting up r-cran-curl (5.2.0+dfsg-1) ...
257s Setting up r-cran-codetools (0.2-19-1) ...
257s Setting up r-bioc-biocgenerics (0.48.1-2) ...
257s Setting up r-cran-rlang (1.1.3-1) ...
257s Setting up r-cran-matrixstats (1.2.0-1) ...
257s Setting up r-bioc-matrixgenerics (1.14.0-1) ...
257s Setting up r-cran-sys (3.4.2-1) ...
257s Setting up r-cran-plogr (0.2.0-3build1) ...
257s Setting up r-cran-withr (2.5.0-1) ...
257s Setting up r-cran-mime (0.12-1) ...
257s Setting up r-cran-generics (0.1.3-1) ...
257s Setting up r-cran-abind (1.4-5-2) ...
257s Setting up r-cran-digest (0.6.34-1) ...
257s Setting up r-cran-yaml (2.3.8-1) ...
257s Setting up r-cran-lambda.r (1.2.4-2build1) ...
257s Setting up r-cran-dbi (1.2.2-1) ...
257s Setting up r-cran-prettyunits (1.2.0-1) ...
257s Setting up r-cran-fansi (1.0.5-1) ...
257s Setting up r-cran-snow (1:0.4.4-2) ...
257s Setting up r-cran-glue (1.7.0-1) ...
257s Setting up r-cran-bit (4.0.5-1) ...
257s Setting up r-cran-xtable (1:1.8-4-2) ...
257s Setting up r-cran-cli (3.6.2-1) ...
257s Setting up gfortran (4:13.2.0-7ubuntu1) ...
257s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
257s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
257s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
257s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
257s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
257s Setting up r-cran-bitops (1.0-7-1) ...
257s Setting up r-cran-bit64 (4.0.5-1) ...
257s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
257s Setting up r-cran-askpass (1.2.0-1) ...
257s Setting up r-cran-fastmap (1.1.1-1) ...
257s Setting up r-cran-png (0.1-8-1) ...
257s Setting up r-bioc-biobase (2.62.0-1) ...
257s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
257s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
257s Setting up r-cran-utf8 (1.2.4-1) ...
257s Setting up r-cran-stringi (1.8.3-1) ...
257s Setting up r-cran-cpp11 (0.4.7-1) ...
257s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
257s Setting up r-cran-runit (0.4.32-3) ...
257s Setting up r-cran-futile.logger (1.4.3-4build1) ...
257s Setting up r-bioc-limma (3.58.1+dfsg-1) ...
257s Setting up r-cran-matrix (1.6-5-1) ...
257s Setting up r-cran-cachem (1.0.8-1) ...
257s Setting up r-bioc-iranges (2.36.0-1) ...
257s Setting up r-cran-rjson (0.2.21-1) ...
257s Setting up r-cran-rcurl (1.98-1.14+dfsg-1build1) ...
257s Setting up r-cran-restfulr (0.0.15-1) ...
257s Setting up r-cran-vctrs (0.6.5-1) ...
257s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
257s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
257s Setting up r-base-dev (4.3.2-1build1) ...
257s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
257s Setting up r-cran-stringr (1.5.1-1) ...
257s Setting up r-bioc-biocparallel (1.36.0-1) ...
257s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ...
257s Setting up r-cran-xml2 (1.3.6-1) ...
257s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
257s Setting up r-cran-survival (3.5-8-1) ...
257s Setting up r-bioc-biocio (1.12.0+dfsg-1) ...
257s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
257s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
257s Setting up r-cran-httr (1.4.7+dfsg-1) ...
257s Setting up r-cran-hms (1.1.3-1) ...
257s Setting up r-cran-memoise (2.0.1-1) ...
257s Setting up r-cran-purrr (1.0.2-1) ...
257s Setting up r-cran-blob (1.2.4-1) ...
257s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
257s Setting up r-bioc-xvector (0.42.0-1) ...
257s Setting up r-cran-dplyr (1.1.4-1) ...
257s Setting up r-cran-rsqlite (2.3.4-1) ...
257s Setting up r-cran-progress (1.2.3-1) ...
257s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
257s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
257s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
257s Setting up r-cran-tidyr (1.3.1-1) ...
257s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
257s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ...
257s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
257s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
257s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ...
257s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
257s Setting up r-bioc-annotationdbi (1.64.1-1) ...
257s Setting up r-bioc-annotate (1.80.0+dfsg-1) ...
257s Setting up r-bioc-biomart (2.58.2+dfsg-1) ...
257s Setting up r-bioc-genefilter (1.84.0-1) ...
257s Setting up r-bioc-genomicalignments (1.38.2-1) ...
257s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ...
257s Setting up r-bioc-rtracklayer (1.62.0-1) ...
257s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ...
257s Setting up r-bioc-bsgenome (1.70.2-1) ...
257s Setting up autopkgtest-satdep (0) ...
257s Processing triggers for man-db (2.12.0-3) ...
258s Processing triggers for install-info (7.1-3) ...
258s Processing triggers for libc-bin (2.39-0ubuntu2) ...
264s (Reading database ... 82647 files and directories currently installed.)
264s Removing autopkgtest-satdep (0) ...
264s autopkgtest [19:14:15]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
264s autopkgtest [19:14:15]: test pkg-r-autopkgtest: [-----------------------
264s Test: Try to load the R library rtracklayer
264s 
264s R version 4.3.2 (2023-10-31) -- "Eye Holes"
264s Copyright (C) 2023 The R Foundation for Statistical Computing
264s Platform: s390x-ibm-linux-gnu (64-bit)
264s 
264s R is free software and comes with ABSOLUTELY NO WARRANTY.
264s You are welcome to redistribute it under certain conditions.
264s Type 'license()' or 'licence()' for distribution details.
264s 
264s R is a collaborative project with many contributors.
264s Type 'contributors()' for more information and
264s 'citation()' on how to cite R or R packages in publications.
264s 
264s Type 'demo()' for some demos, 'help()' for on-line help, or
264s 'help.start()' for an HTML browser interface to help.
264s Type 'q()' to quit R.
264s 
265s > library('rtracklayer')
265s Loading required package: GenomicRanges
265s Loading required package: stats4
265s Loading required package: BiocGenerics
265s 
265s Attaching package: ‘BiocGenerics’
265s 
265s The following objects are masked from ‘package:stats’:
265s 
265s     IQR, mad, sd, var, xtabs
265s 
265s The following objects are masked from ‘package:base’:
265s 
265s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
265s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
265s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
265s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
265s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
265s     table, tapply, union, unique, unsplit, which.max, which.min
265s 
265s Loading required package: S4Vectors
265s 
265s Attaching package: ‘S4Vectors’
265s 
265s The following object is masked from ‘package:utils’:
265s 
265s     findMatches
265s 
265s The following objects are masked from ‘package:base’:
265s 
265s     expand.grid, I, unname
265s 
265s Loading required package: IRanges
266s Loading required package: GenomeInfoDb
273s > 
273s > 
273s Other tests are currently unsupported!
273s They will be progressively added.
273s autopkgtest [19:14:24]: test pkg-r-autopkgtest: -----------------------]
274s autopkgtest [19:14:25]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
274s pkg-r-autopkgtest    PASS
274s autopkgtest [19:14:25]: @@@@@@@@@@@@@@@@@@@@ summary
274s pkg-r-autopkgtest    PASS
285s Creating nova instance adt-noble-s390x-r-bioc-rtracklayer-20240316-190951-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...