0s autopkgtest [18:53:57]: starting date and time: 2024-03-16 18:53:57+0000
  0s autopkgtest [18:53:57]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [18:53:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ag8ytg01/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-rtracklayer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-5.secgroup --name adt-noble-s390x-r-bioc-rtracklayer-20240316-185357-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
128s autopkgtest [18:56:05]: testbed dpkg architecture: s390x
128s autopkgtest [18:56:05]: testbed apt version: 2.7.12
128s autopkgtest [18:56:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup
129s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
129s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB]
129s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
129s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
129s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB]
129s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB]
129s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B]
129s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B]
129s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B]
129s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3752 kB]
130s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B]
130s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB]
130s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B]
132s Fetched 8760 kB in 2s (3911 kB/s)
132s Reading package lists...
134s Reading package lists...
134s Building dependency tree...
134s Reading state information...
135s Calculating upgrade...
135s The following packages will be REMOVED:
135s   libssl3
135s The following NEW packages will be installed:
135s   libssl3t64
135s The following packages have been kept back:
135s   curl
135s The following packages will be upgraded:
135s   openssl ubuntu-minimal ubuntu-standard
135s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded.
135s Need to get 2680 kB of archives.
135s After this operation, 23.6 kB of additional disk space will be used.
135s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB]
135s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB]
135s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB]
135s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB]
136s Fetched 2680 kB in 1s (3955 kB/s)
136s (Reading database ... 
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(Reading database ... 52171 files and directories currently installed.)
136s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ...
136s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
136s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested:
136s  wget depends on libssl3 (>= 3.0.0).
136s  tnftp depends on libssl3 (>= 3.0.0).
136s  tcpdump depends on libssl3 (>= 3.0.0).
136s  systemd-resolved depends on libssl3 (>= 3.0.0).
136s  systemd depends on libssl3 (>= 3.0.0).
136s  sudo depends on libssl3 (>= 3.0.0).
136s  s390-tools depends on libssl3 (>= 3.0.0).
136s  rsync depends on libssl3 (>= 3.0.0).
136s  python3-cryptography depends on libssl3 (>= 3.0.0).
136s  openssh-server depends on libssl3 (>= 3.0.10).
136s  openssh-client depends on libssl3 (>= 3.0.10).
136s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
136s  libsystemd-shared:s390x depends on libssl3 (>= 3.0.0).
136s  libssh-4:s390x depends on libssl3 (>= 3.0.0).
136s  libsasl2-modules:s390x depends on libssl3 (>= 3.0.0).
136s  libsasl2-2:s390x depends on libssl3 (>= 3.0.0).
136s  libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0).
136s  libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0).
136s  libnvme1 depends on libssl3 (>= 3.0.0).
136s  libkrb5-3:s390x depends on libssl3 (>= 3.0.0).
136s  libkmod2:s390x depends on libssl3 (>= 3.0.0).
136s  libfido2-1:s390x depends on libssl3 (>= 3.0.0).
136s  libcurl4:s390x depends on libssl3 (>= 3.0.0).
136s  libcryptsetup12:s390x depends on libssl3 (>= 3.0.0).
136s  kmod depends on libssl3 (>= 3.0.0).
136s  dhcpcd-base depends on libssl3 (>= 3.0.0).
136s  bind9-libs:s390x depends on libssl3 (>= 3.0.0).
136s 
136s (Reading database ... 
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(Reading database ... 52171 files and directories currently installed.)
136s Removing libssl3:s390x (3.0.10-1ubuntu4) ...
136s Selecting previously unselected package libssl3t64:s390x.
136s (Reading database ... 
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(Reading database ... 52160 files and directories currently installed.)
136s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ...
136s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ...
136s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ...
136s Unpacking ubuntu-minimal (1.536) over (1.535) ...
136s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ...
136s Unpacking ubuntu-standard (1.536) over (1.535) ...
136s Setting up ubuntu-minimal (1.536) ...
136s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ...
136s Setting up ubuntu-standard (1.536) ...
136s Setting up openssl (3.0.13-0ubuntu1) ...
136s Processing triggers for man-db (2.12.0-3) ...
137s Processing triggers for libc-bin (2.39-0ubuntu2) ...
137s Reading package lists...
137s Building dependency tree...
137s Reading state information...
137s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
138s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
138s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
138s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
138s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
139s Reading package lists...
139s Reading package lists...
139s Building dependency tree...
139s Reading state information...
139s Calculating upgrade...
140s The following packages have been kept back:
140s   curl
140s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
140s Reading package lists...
140s Building dependency tree...
140s Reading state information...
140s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
142s autopkgtest [18:56:19]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024
143s autopkgtest [18:56:20]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rtracklayer
145s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rtracklayer 1.62.0-1 (dsc) [2398 B]
145s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rtracklayer 1.62.0-1 (tar) [4019 kB]
145s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rtracklayer 1.62.0-1 (diff) [27.2 kB]
145s gpgv: Signature made Thu Nov 30 17:25:54 2023 UTC
145s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
145s gpgv:                issuer "tillea@rki.de"
145s gpgv: Can't check signature: No public key
145s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rtracklayer_1.62.0-1.dsc: no acceptable signature found
145s autopkgtest [18:56:22]: testing package r-bioc-rtracklayer version 1.62.0-1
145s autopkgtest [18:56:22]: build not needed
147s autopkgtest [18:56:24]: test pkg-r-autopkgtest: preparing testbed
148s Reading package lists...
148s Building dependency tree...
148s Reading state information...
148s Starting pkgProblemResolver with broken count: 0
148s Starting 2 pkgProblemResolver with broken count: 0
148s Done
148s The following additional packages will be installed:
148s   build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl
148s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
148s   g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13
148s   gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13
148s   gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
148s   libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev
148s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64
148s   libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev
148s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
148s   libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
148s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery liblapack-dev
148s   liblapack3 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0
148s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
148s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
148s   libpng-dev libpsl5t64 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev
148s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1
148s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6
148s   linux-libc-dev node-html5shiv pkg-config pkg-r-autopkgtest pkgconf
148s   pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi
148s   r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio
148s   r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome
148s   r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb
148s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
148s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma
148s   r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools
148s   r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
148s   r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
148s   r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
148s   r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon
148s   r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-fansi
148s   r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger
148s   r-cran-futile.options r-cran-generics r-cran-glue r-cran-hms r-cran-httr
148s   r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle
148s   r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats
148s   r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig
148s   r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-purrr
148s   r-cran-r6 r-cran-rappdirs r-cran-rcurl r-cran-restfulr r-cran-rjson
148s   r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-snow r-cran-statmod
148s   r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble
148s   r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr
148s   r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip
148s   x11-common xdg-utils zip zlib1g-dev
148s Suggested packages:
148s   cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib
148s   gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison
148s   gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib
148s   gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev
148s   liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev
148s   libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
148s   libboost-contract1.83-dev libboost-coroutine1.83-dev
148s   libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
148s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
148s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
148s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
148s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
148s   libboost-numpy1.83-dev libboost-program-options1.83-dev
148s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
148s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
148s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
148s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
148s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
148s   glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
148s   tcl8.6 tk8.6 nodejs elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
148s   texlive-base texlive-latex-base texlive-plain-generic
148s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
148s   texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db
148s   r-bioc-graph r-bioc-biocstyle r-cran-knitr r-bioc-all r-cran-testthat
148s   r-cran-rmarkdown r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc
148s   r-cran-doparallel r-bioc-variantannotation r-bioc-shortread
148s   r-cran-batchtools r-cran-data.table r-cran-mockery r-cran-webmockr
148s   r-cran-biocmanager r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats
148s   r-cran-class r-cran-rcolorbrewer r-cran-r.utils r-bioc-edger
148s   r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz
148s   r-bioc-annotationhub r-bioc-dexseq r-cran-biasedurn r-cran-ellipse
148s   r-cran-gplots r-cran-locfit r-cran-mass r-bioc-sparsematrixstats
148s   r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-rstudioapi
148s   r-cran-rmysql r-cran-shiny r-cran-lubridate r-cran-getopt r-cran-formattable
148s   r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-scales
148s   r-cran-units r-cran-vdiffr r-cran-rcpp r-cran-rmpi r-cran-rlecuyer
148s   r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-evaluate
148s   r-cran-here r-cran-htmltools r-cran-pkgbuild r-cran-pkgload r-cran-plm
148s   r-cran-zoo
148s Recommended packages:
148s   bzip2-doc manpages manpages-dev libc-devtools javascript-common libpng-tools
148s   r-recommended r-doc-html r-cran-testthat r-cran-callr r-cran-covr
148s   r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-mockery
148s   r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot
148s   r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-brio r-cran-decor
148s   r-cran-desc r-cran-ggplot2 r-cran-lobstr r-cran-scales r-cran-rcpp
148s   r-cran-spelling r-cran-later r-cran-httpuv r-cran-webutils
148s   r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-testit
148s   r-cran-pkgload r-cran-waldo r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf
148s   r-cran-lintr r-cran-tidyverse r-cran-base64enc r-cran-markdown
148s   r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-fs r-cran-usethis
148s   r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-data.table
148s   r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot
148s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
148s   x11-xserver-utils
149s The following packages will be REMOVED:
149s   libcurl4 libpsl5
149s The following NEW packages will be installed:
149s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu
149s   cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config
149s   fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-s390x-linux-gnu
149s   g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu
149s   gfortran gfortran-13 gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu
149s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libboost-dev
149s   libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
149s   libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libfreetype6
149s   libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3
149s   libharfbuzz0b libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
149s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery
149s   liblapack-dev liblapack3 liblzma-dev libmpc3 libncurses-dev libnsl-dev
149s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
149s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
149s   libpixman-1-0 libpkgconf3 libpng-dev libpsl5t64 libreadline-dev libsharpyuv0
149s   libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6
149s   libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2
149s   libxrender1 libxss1 libxt6 linux-libc-dev node-html5shiv pkg-config
149s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate
149s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics
149s   r-bioc-biocio r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings
149s   r-bioc-bsgenome r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb
149s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
149s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma
149s   r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools
149s   r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
149s   r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
149s   r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
149s   r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon
149s   r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-fansi
149s   r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger
149s   r-cran-futile.options r-cran-generics r-cran-glue r-cran-hms r-cran-httr
149s   r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle
149s   r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats
149s   r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig
149s   r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-purrr
149s   r-cran-r6 r-cran-rappdirs r-cran-rcurl r-cran-restfulr r-cran-rjson
149s   r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-snow r-cran-statmod
149s   r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble
149s   r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr
149s   r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip
149s   x11-common xdg-utils zip zlib1g-dev
149s The following packages will be upgraded:
149s   curl
149s 1 upgraded, 209 newly installed, 2 to remove and 0 not upgraded.
149s Need to get 319 MB/319 MB of archives.
149s After this operation, 1102 MB of additional disk space will be used.
149s Get:1 /tmp/autopkgtest.Ot4kuO/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [792 B]
149s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB]
149s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB]
149s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB]
149s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB]
149s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB]
149s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB]
149s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB]
149s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB]
149s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB]
149s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB]
149s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB]
149s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB]
149s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB]
150s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B]
150s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B]
150s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB]
150s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB]
150s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB]
150s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB]
150s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B]
150s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB]
150s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB]
150s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB]
150s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB]
150s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB]
150s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B]
150s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B]
150s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB]
150s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB]
150s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB]
150s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B]
150s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B]
150s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
150s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB]
150s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB]
150s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
150s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
151s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB]
151s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB]
151s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB]
151s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB]
151s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB]
151s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB]
151s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB]
151s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B]
151s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B]
151s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB]
151s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB]
151s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB]
151s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB]
151s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B]
151s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB]
151s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB]
151s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB]
151s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B]
151s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB]
151s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB]
151s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB]
151s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB]
151s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB]
151s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB]
151s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB]
151s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB]
151s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB]
152s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB]
152s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB]
152s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
152s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
152s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
152s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
152s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB]
152s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB]
152s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB]
152s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB]
152s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB]
152s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB]
152s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB]
152s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB]
152s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB]
152s Get:81 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B]
152s Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB]
152s Get:83 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB]
152s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B]
152s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB]
152s Get:86 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB]
152s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB]
152s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB]
152s Get:89 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB]
152s Get:90 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB]
152s Get:91 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB]
152s Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB]
152s Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB]
152s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB]
152s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB]
152s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB]
152s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B]
152s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB]
152s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB]
152s Get:100 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
152s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB]
152s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB]
152s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B]
152s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB]
152s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB]
152s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
153s Get:107 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB]
154s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB]
154s Get:109 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B]
154s Get:110 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
154s Get:111 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB]
154s Get:112 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB]
154s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB]
154s Get:114 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB]
154s Get:115 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB]
154s Get:116 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB]
154s Get:117 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB]
154s Get:118 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB]
154s Get:119 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB]
154s Get:120 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB]
154s Get:121 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
154s Get:122 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
154s Get:123 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB]
154s Get:124 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB]
154s Get:125 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB]
154s Get:126 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB]
154s Get:127 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
154s Get:128 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB]
154s Get:129 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB]
154s Get:130 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB]
155s Get:131 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB]
155s Get:132 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB]
155s Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB]
155s Get:134 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB]
155s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB]
155s Get:136 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB]
155s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB]
155s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB]
155s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB]
155s Get:140 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
155s Get:141 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB]
155s Get:142 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB]
155s Get:143 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1 [794 kB]
155s Get:144 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
155s Get:145 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
155s Get:146 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB]
155s Get:147 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB]
156s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
156s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
156s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB]
156s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB]
156s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB]
156s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB]
156s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
156s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB]
156s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB]
156s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
156s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB]
156s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB]
156s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB]
156s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB]
157s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB]
157s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB]
157s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB]
157s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB]
157s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB]
157s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB]
157s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB]
157s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB]
157s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB]
157s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB]
157s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
157s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
157s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB]
157s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB]
157s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B]
157s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB]
157s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB]
157s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB]
157s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB]
157s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB]
157s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB]
157s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB]
157s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB]
157s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB]
157s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-1 [1410 kB]
157s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1build1 [3700 kB]
157s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB]
157s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
157s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB]
157s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB]
157s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB]
157s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB]
157s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB]
158s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB]
158s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
158s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB]
158s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB]
158s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB]
158s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB]
158s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB]
158s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB]
159s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-bsgenome all 1.70.2-1 [6975 kB]
159s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-survival s390x 3.5-8-1 [6161 kB]
159s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genefilter s390x 1.84.0-1 [1124 kB]
159s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB]
159s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB]
159s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-limma s390x 3.58.1+dfsg-1 [1900 kB]
159s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB]
162s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-runit all 0.4.32-3 [283 kB]
163s Preconfiguring packages ...
163s Fetched 319 MB in 14s (23.3 MB/s)
163s (Reading database ... 
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163s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ...
163s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
163s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested:
163s  wget depends on libpsl5 (>= 0.16.0).
163s  libcurl4:s390x depends on libpsl5 (>= 0.16.0).
163s  libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0).
163s 
163s (Reading database ... 
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163s Removing libpsl5:s390x (0.21.2-1build1) ...
163s Selecting previously unselected package libpsl5t64:s390x.
163s (Reading database ... 
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163s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ...
163s Unpacking libpsl5t64:s390x (0.21.2-1.1) ...
163s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested:
163s  s390-tools depends on libcurl4 (>= 7.16.2).
163s 
163s (Reading database ... 
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163s Removing libcurl4:s390x (8.5.0-2ubuntu2) ...
163s Selecting previously unselected package libcurl4t64:s390x.
163s (Reading database ... 
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163s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ...
163s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ...
163s Selecting previously unselected package libc-dev-bin.
163s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ...
163s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
163s Selecting previously unselected package linux-libc-dev:s390x.
163s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ...
163s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ...
163s Selecting previously unselected package libcrypt-dev:s390x.
163s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ...
163s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ...
163s Selecting previously unselected package libtirpc-dev:s390x.
163s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ...
163s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ...
163s Selecting previously unselected package libnsl-dev:s390x.
163s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ...
163s Unpacking libnsl-dev:s390x (1.3.0-3) ...
164s Selecting previously unselected package rpcsvc-proto.
164s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ...
164s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
164s Selecting previously unselected package libc6-dev:s390x.
164s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ...
164s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ...
164s Selecting previously unselected package libisl23:s390x.
164s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ...
164s Unpacking libisl23:s390x (0.26-3) ...
164s Selecting previously unselected package libmpc3:s390x.
164s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ...
164s Unpacking libmpc3:s390x (1.3.1-1) ...
164s Selecting previously unselected package cpp-13-s390x-linux-gnu.
164s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
164s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
164s Selecting previously unselected package cpp-13.
164s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ...
164s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
164s Selecting previously unselected package cpp-s390x-linux-gnu.
164s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
164s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
164s Selecting previously unselected package cpp.
164s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ...
164s Unpacking cpp (4:13.2.0-7ubuntu1) ...
164s Selecting previously unselected package libcc1-0:s390x.
164s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ...
164s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ...
164s Selecting previously unselected package libgomp1:s390x.
164s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ...
164s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ...
164s Selecting previously unselected package libitm1:s390x.
164s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ...
164s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ...
164s Selecting previously unselected package libatomic1:s390x.
164s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ...
164s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ...
164s Selecting previously unselected package libasan8:s390x.
164s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ...
164s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ...
164s Selecting previously unselected package libubsan1:s390x.
164s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ...
164s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ...
164s Selecting previously unselected package libgcc-13-dev:s390x.
164s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ...
164s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ...
164s Selecting previously unselected package gcc-13-s390x-linux-gnu.
164s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
164s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
165s Selecting previously unselected package gcc-13.
165s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ...
165s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
165s Selecting previously unselected package gcc-s390x-linux-gnu.
165s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
165s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
165s Selecting previously unselected package gcc.
165s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ...
165s Unpacking gcc (4:13.2.0-7ubuntu1) ...
165s Selecting previously unselected package libstdc++-13-dev:s390x.
165s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ...
165s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ...
165s Selecting previously unselected package g++-13-s390x-linux-gnu.
165s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
165s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
165s Selecting previously unselected package g++-13.
165s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ...
165s Unpacking g++-13 (13.2.0-17ubuntu2) ...
165s Selecting previously unselected package g++-s390x-linux-gnu.
165s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
165s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
166s Selecting previously unselected package g++.
166s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ...
166s Unpacking g++ (4:13.2.0-7ubuntu1) ...
166s Selecting previously unselected package build-essential.
166s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ...
166s Unpacking build-essential (12.10ubuntu1) ...
166s Selecting previously unselected package dctrl-tools.
166s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ...
166s Unpacking dctrl-tools (2.24-3build2) ...
166s Selecting previously unselected package libfreetype6:s390x.
166s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ...
166s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ...
166s Selecting previously unselected package fonts-dejavu-mono.
166s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ...
166s Unpacking fonts-dejavu-mono (2.37-8) ...
166s Selecting previously unselected package fonts-dejavu-core.
166s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ...
166s Unpacking fonts-dejavu-core (2.37-8) ...
166s Selecting previously unselected package fontconfig-config.
166s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ...
166s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
166s Selecting previously unselected package libfontconfig1:s390x.
166s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ...
166s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ...
166s Selecting previously unselected package fontconfig.
166s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ...
166s Unpacking fontconfig (2.15.0-1ubuntu1) ...
166s Selecting previously unselected package libgfortran5:s390x.
166s Preparing to unpack .../038-libgfortran5_14-20240303-1ubuntu1_s390x.deb ...
166s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ...
166s Selecting previously unselected package libgfortran-13-dev:s390x.
166s Preparing to unpack .../039-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ...
166s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ...
166s Selecting previously unselected package gfortran-13-s390x-linux-gnu.
166s Preparing to unpack .../040-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
166s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
166s Selecting previously unselected package gfortran-13.
166s Preparing to unpack .../041-gfortran-13_13.2.0-17ubuntu2_s390x.deb ...
166s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
166s Selecting previously unselected package gfortran-s390x-linux-gnu.
166s Preparing to unpack .../042-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
166s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
166s Selecting previously unselected package gfortran.
166s Preparing to unpack .../043-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ...
166s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
166s Selecting previously unselected package icu-devtools.
166s Preparing to unpack .../044-icu-devtools_74.2-1ubuntu1_s390x.deb ...
166s Unpacking icu-devtools (74.2-1ubuntu1) ...
166s Selecting previously unselected package libblas3:s390x.
166s Preparing to unpack .../045-libblas3_3.12.0-3_s390x.deb ...
166s Unpacking libblas3:s390x (3.12.0-3) ...
166s Selecting previously unselected package libblas-dev:s390x.
166s Preparing to unpack .../046-libblas-dev_3.12.0-3_s390x.deb ...
166s Unpacking libblas-dev:s390x (3.12.0-3) ...
166s Selecting previously unselected package libboost1.83-dev:s390x.
166s Preparing to unpack .../047-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ...
166s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ...
169s Selecting previously unselected package libboost-dev:s390x.
169s Preparing to unpack .../048-libboost-dev_1.83.0.1ubuntu2_s390x.deb ...
169s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ...
169s Selecting previously unselected package libbz2-dev:s390x.
169s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ...
169s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ...
169s Selecting previously unselected package libpixman-1-0:s390x.
169s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_s390x.deb ...
169s Unpacking libpixman-1-0:s390x (0.42.2-1) ...
169s Selecting previously unselected package libxcb-render0:s390x.
169s Preparing to unpack .../051-libxcb-render0_1.15-1_s390x.deb ...
169s Unpacking libxcb-render0:s390x (1.15-1) ...
169s Selecting previously unselected package libxcb-shm0:s390x.
169s Preparing to unpack .../052-libxcb-shm0_1.15-1_s390x.deb ...
169s Unpacking libxcb-shm0:s390x (1.15-1) ...
169s Selecting previously unselected package libxrender1:s390x.
169s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_s390x.deb ...
169s Unpacking libxrender1:s390x (1:0.9.10-1.1) ...
169s Selecting previously unselected package libcairo2:s390x.
169s Preparing to unpack .../054-libcairo2_1.18.0-1_s390x.deb ...
169s Unpacking libcairo2:s390x (1.18.0-1) ...
169s Selecting previously unselected package libdatrie1:s390x.
169s Preparing to unpack .../055-libdatrie1_0.2.13-3_s390x.deb ...
169s Unpacking libdatrie1:s390x (0.2.13-3) ...
169s Selecting previously unselected package libdeflate0:s390x.
169s Preparing to unpack .../056-libdeflate0_1.19-1_s390x.deb ...
169s Unpacking libdeflate0:s390x (1.19-1) ...
169s Selecting previously unselected package libgraphite2-3:s390x.
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169s Selecting previously unselected package libice6:s390x.
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170s Selecting previously unselected package libpangocairo-1.0-0:s390x.
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170s Selecting previously unselected package libpcre2-posix3:s390x.
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170s Selecting previously unselected package zlib1g-dev:s390x.
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170s Selecting previously unselected package libpng-dev:s390x.
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170s Selecting previously unselected package libtcl8.6:s390x.
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170s Selecting previously unselected package libwebp7:s390x.
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170s Selecting previously unselected package libtiff6:s390x.
170s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ...
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170s Selecting previously unselected package libxft2:s390x.
170s Preparing to unpack .../092-libxft2_2.3.6-1_s390x.deb ...
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170s Selecting previously unselected package libxss1:s390x.
170s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_s390x.deb ...
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170s Selecting previously unselected package libtk8.6:s390x.
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171s Selecting previously unselected package libxt6:s390x.
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171s Selecting previously unselected package node-html5shiv.
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171s Selecting previously unselected package pkgconf-bin.
171s Preparing to unpack .../097-pkgconf-bin_1.8.1-2_s390x.deb ...
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171s Selecting previously unselected package pkgconf:s390x.
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171s Selecting previously unselected package pkg-config:s390x.
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171s Selecting previously unselected package zip.
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171s Selecting previously unselected package xdg-utils.
171s Preparing to unpack .../102-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
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171s Selecting previously unselected package r-base-core.
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171s Selecting previously unselected package liblzma-dev:s390x.
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171s Selecting previously unselected package pkg-r-autopkgtest.
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171s Selecting previously unselected package r-bioc-biocgenerics.
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171s Selecting previously unselected package r-bioc-biobase.
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171s Selecting previously unselected package r-bioc-s4vectors.
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171s Selecting previously unselected package r-bioc-iranges.
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171s Selecting previously unselected package r-cran-dbi.
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171s Selecting previously unselected package r-cran-bit.
171s Preparing to unpack .../112-r-cran-bit_4.0.5-1_s390x.deb ...
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171s Selecting previously unselected package r-cran-bit64.
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172s Selecting previously unselected package r-cran-glue.
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172s Selecting previously unselected package r-cran-vctrs.
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172s Selecting previously unselected package r-cran-blob.
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172s Selecting previously unselected package r-cran-fastmap.
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172s Selecting previously unselected package r-cran-memoise.
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172s Selecting previously unselected package r-cran-pkgconfig.
172s Preparing to unpack .../123-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
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172s Selecting previously unselected package r-cran-plogr.
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172s Selecting previously unselected package r-cran-cpp11.
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172s Selecting previously unselected package r-cran-rsqlite.
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172s Selecting previously unselected package r-cran-curl.
172s Preparing to unpack .../127-r-cran-curl_5.2.0+dfsg-1_s390x.deb ...
172s Unpacking r-cran-curl (5.2.0+dfsg-1) ...
172s Selecting previously unselected package r-cran-jsonlite.
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172s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
172s Selecting previously unselected package r-cran-mime.
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172s Selecting previously unselected package r-cran-sys.
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172s Selecting previously unselected package r-cran-askpass.
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172s Selecting previously unselected package r-cran-openssl.
172s Preparing to unpack .../132-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ...
172s Unpacking r-cran-openssl (2.1.1+dfsg-2) ...
172s Selecting previously unselected package r-cran-r6.
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172s Selecting previously unselected package r-cran-httr.
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172s Selecting previously unselected package r-cran-png.
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172s Selecting previously unselected package r-bioc-zlibbioc.
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172s Selecting previously unselected package r-bioc-xvector.
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172s Selecting previously unselected package r-cran-bitops.
172s Preparing to unpack .../138-r-cran-bitops_1.0-7-1_s390x.deb ...
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172s Selecting previously unselected package r-cran-rcurl.
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172s Selecting previously unselected package r-bioc-genomeinfodbdata.
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172s Selecting previously unselected package r-bioc-genomeinfodb.
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172s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
172s Selecting previously unselected package r-cran-crayon.
172s Preparing to unpack .../142-r-cran-crayon_1.5.2-1_all.deb ...
172s Unpacking r-cran-crayon (1.5.2-1) ...
172s Selecting previously unselected package r-bioc-biostrings.
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172s Selecting previously unselected package r-bioc-keggrest.
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172s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ...
172s Selecting previously unselected package r-bioc-annotationdbi.
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172s Unpacking r-bioc-annotationdbi (1.64.1-1) ...
172s Selecting previously unselected package r-cran-xml.
172s Preparing to unpack .../146-r-cran-xml_3.99-0.16.1-1_s390x.deb ...
172s Unpacking r-cran-xml (3.99-0.16.1-1) ...
172s Selecting previously unselected package r-cran-xtable.
172s Preparing to unpack .../147-r-cran-xtable_1%3a1.8-4-2_all.deb ...
172s Unpacking r-cran-xtable (1:1.8-4-2) ...
173s Selecting previously unselected package r-bioc-annotate.
173s Preparing to unpack .../148-r-bioc-annotate_1.80.0+dfsg-1_all.deb ...
173s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ...
173s Selecting previously unselected package r-cran-generics.
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173s Unpacking r-cran-generics (0.1.3-1) ...
173s Selecting previously unselected package r-cran-magrittr.
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173s Unpacking r-cran-magrittr (2.0.3-1) ...
173s Selecting previously unselected package r-cran-fansi.
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173s Unpacking r-cran-fansi (1.0.5-1) ...
173s Selecting previously unselected package r-cran-utf8.
173s Preparing to unpack .../152-r-cran-utf8_1.2.4-1_s390x.deb ...
173s Unpacking r-cran-utf8 (1.2.4-1) ...
173s Selecting previously unselected package r-cran-pillar.
173s Preparing to unpack .../153-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
173s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
173s Selecting previously unselected package r-cran-tibble.
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173s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
173s Selecting previously unselected package r-cran-withr.
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173s Unpacking r-cran-withr (2.5.0-1) ...
173s Selecting previously unselected package r-cran-tidyselect.
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173s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
173s Selecting previously unselected package r-cran-dplyr.
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173s Unpacking r-cran-dplyr (1.1.4-1) ...
173s Selecting previously unselected package r-cran-purrr.
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173s Selecting previously unselected package r-cran-stringi.
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173s Unpacking r-cran-stringi (1.8.3-1) ...
173s Selecting previously unselected package r-cran-stringr.
173s Preparing to unpack .../160-r-cran-stringr_1.5.1-1_all.deb ...
173s Unpacking r-cran-stringr (1.5.1-1) ...
173s Selecting previously unselected package r-cran-tidyr.
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173s Unpacking r-cran-tidyr (1.3.1-1) ...
173s Selecting previously unselected package r-cran-dbplyr.
173s Preparing to unpack .../162-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ...
173s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ...
173s Selecting previously unselected package r-cran-filelock.
173s Preparing to unpack .../163-r-cran-filelock_1.0.3-1_s390x.deb ...
173s Unpacking r-cran-filelock (1.0.3-1) ...
173s Selecting previously unselected package r-bioc-biocfilecache.
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173s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ...
173s Selecting previously unselected package r-bioc-biocio.
173s Preparing to unpack .../165-r-bioc-biocio_1.12.0+dfsg-1_all.deb ...
173s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ...
173s Selecting previously unselected package r-cran-formatr.
173s Preparing to unpack .../166-r-cran-formatr_1.14-1_all.deb ...
173s Unpacking r-cran-formatr (1.14-1) ...
173s Selecting previously unselected package r-cran-lambda.r.
173s Preparing to unpack .../167-r-cran-lambda.r_1.2.4-2build1_all.deb ...
173s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
173s Selecting previously unselected package r-cran-futile.options.
173s Preparing to unpack .../168-r-cran-futile.options_1.0.1-3build1_all.deb ...
173s Unpacking r-cran-futile.options (1.0.1-3build1) ...
173s Selecting previously unselected package r-cran-futile.logger.
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173s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
173s Selecting previously unselected package r-cran-snow.
173s Preparing to unpack .../170-r-cran-snow_1%3a0.4.4-2_all.deb ...
173s Unpacking r-cran-snow (1:0.4.4-2) ...
173s Selecting previously unselected package r-cran-codetools.
173s Preparing to unpack .../171-r-cran-codetools_0.2-19-1_all.deb ...
173s Unpacking r-cran-codetools (0.2-19-1) ...
173s Selecting previously unselected package r-cran-bh.
173s Preparing to unpack .../172-r-cran-bh_1.84.0-1_all.deb ...
173s Unpacking r-cran-bh (1.84.0-1) ...
173s Selecting previously unselected package r-bioc-biocparallel.
173s Preparing to unpack .../173-r-bioc-biocparallel_1.36.0-1_s390x.deb ...
173s Unpacking r-bioc-biocparallel (1.36.0-1) ...
173s Selecting previously unselected package r-cran-hms.
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173s Unpacking r-cran-hms (1.1.3-1) ...
173s Selecting previously unselected package r-cran-prettyunits.
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173s Unpacking r-cran-prettyunits (1.2.0-1) ...
173s Selecting previously unselected package r-cran-progress.
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173s Unpacking r-cran-progress (1.2.3-1) ...
173s Selecting previously unselected package r-cran-digest.
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173s Unpacking r-cran-digest (0.6.34-1) ...
173s Selecting previously unselected package r-cran-rappdirs.
173s Preparing to unpack .../178-r-cran-rappdirs_0.3.3-1_s390x.deb ...
173s Unpacking r-cran-rappdirs (0.3.3-1) ...
173s Selecting previously unselected package r-cran-xml2.
173s Preparing to unpack .../179-r-cran-xml2_1.3.6-1_s390x.deb ...
173s Unpacking r-cran-xml2 (1.3.6-1) ...
173s Selecting previously unselected package r-bioc-biomart.
173s Preparing to unpack .../180-r-bioc-biomart_2.58.2+dfsg-1_all.deb ...
173s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ...
173s Selecting previously unselected package r-bioc-genomicranges.
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173s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ...
173s Selecting previously unselected package r-bioc-rhtslib.
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173s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ...
174s Selecting previously unselected package r-bioc-rsamtools.
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174s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ...
174s Selecting previously unselected package r-cran-matrixstats.
174s Preparing to unpack .../184-r-cran-matrixstats_1.2.0-1_s390x.deb ...
174s Unpacking r-cran-matrixstats (1.2.0-1) ...
174s Selecting previously unselected package r-bioc-matrixgenerics.
174s Preparing to unpack .../185-r-bioc-matrixgenerics_1.14.0-1_all.deb ...
174s Unpacking r-bioc-matrixgenerics (1.14.0-1) ...
174s Selecting previously unselected package r-cran-lattice.
174s Preparing to unpack .../186-r-cran-lattice_0.22-5-1_s390x.deb ...
174s Unpacking r-cran-lattice (0.22-5-1) ...
174s Selecting previously unselected package r-cran-matrix.
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174s Unpacking r-cran-matrix (1.6-5-1) ...
174s Selecting previously unselected package r-cran-abind.
174s Preparing to unpack .../188-r-cran-abind_1.4-5-2_all.deb ...
174s Unpacking r-cran-abind (1.4-5-2) ...
174s Selecting previously unselected package r-bioc-s4arrays.
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174s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ...
174s Selecting previously unselected package r-bioc-sparsearray.
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174s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ...
174s Selecting previously unselected package r-bioc-delayedarray.
174s Preparing to unpack .../191-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ...
174s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ...
174s Selecting previously unselected package r-bioc-summarizedexperiment.
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174s Selecting previously unselected package r-bioc-genomicalignments.
174s Preparing to unpack .../193-r-bioc-genomicalignments_1.38.2-1_s390x.deb ...
174s Unpacking r-bioc-genomicalignments (1.38.2-1) ...
174s Selecting previously unselected package r-cran-littler.
174s Preparing to unpack .../194-r-cran-littler_0.3.19-1_s390x.deb ...
174s Unpacking r-cran-littler (0.3.19-1) ...
174s Selecting previously unselected package r-cran-rjson.
174s Preparing to unpack .../195-r-cran-rjson_0.2.21-1_s390x.deb ...
174s Unpacking r-cran-rjson (0.2.21-1) ...
174s Selecting previously unselected package r-cran-yaml.
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174s Unpacking r-cran-yaml (2.3.8-1) ...
174s Selecting previously unselected package r-cran-restfulr.
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174s Unpacking r-cran-restfulr (0.0.15-1) ...
174s Selecting previously unselected package r-bioc-rtracklayer.
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174s Unpacking r-bioc-rtracklayer (1.62.0-1) ...
174s Selecting previously unselected package r-bioc-bsgenome.
174s Preparing to unpack .../199-r-bioc-bsgenome_1.70.2-1_all.deb ...
174s Unpacking r-bioc-bsgenome (1.70.2-1) ...
174s Selecting previously unselected package r-cran-survival.
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174s Unpacking r-cran-survival (3.5-8-1) ...
174s Selecting previously unselected package r-bioc-genefilter.
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174s Selecting previously unselected package r-bioc-genomicfeatures.
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174s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ...
174s Selecting previously unselected package r-cran-statmod.
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174s Selecting previously unselected package r-bioc-limma.
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174s Selecting previously unselected package r-bioc-org.hs.eg.db.
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177s Selecting previously unselected package r-cran-runit.
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177s Unpacking r-cran-runit (0.4.32-3) ...
177s Selecting previously unselected package autopkgtest-satdep.
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177s Unpacking autopkgtest-satdep (0) ...
177s Setting up libgraphite2-3:s390x (1.3.14-2) ...
177s Setting up libpixman-1-0:s390x (0.42.2-1) ...
177s Setting up libsharpyuv0:s390x (1.3.2-0.4) ...
177s Setting up libpaper1:s390x (1.1.29) ...
177s 
177s Creating config file /etc/papersize with new version
177s Setting up libxrender1:s390x (1:0.9.10-1.1) ...
177s Setting up libdatrie1:s390x (0.2.13-3) ...
177s Setting up libxcb-render0:s390x (1.15-1) ...
177s Setting up unzip (6.0-28ubuntu3) ...
177s Setting up x11-common (1:7.7+23ubuntu2) ...
178s Setting up node-html5shiv (3.7.3+dfsg-5) ...
178s Setting up libpsl5t64:s390x (0.21.2-1.1) ...
178s Setting up libdeflate0:s390x (1.19-1) ...
178s Setting up linux-libc-dev:s390x (6.8.0-11.11) ...
178s Setting up libxcb-shm0:s390x (1.15-1) ...
178s Setting up libpaper-utils (1.1.29) ...
178s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ...
178s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ...
178s Setting up libpcre2-16-0:s390x (10.42-4ubuntu1) ...
178s Setting up zip (3.0-13) ...
178s Setting up libpcre2-32-0:s390x (10.42-4ubuntu1) ...
178s Setting up libblas3:s390x (3.12.0-3) ...
178s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
178s Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ...
178s Setting up libpkgconf3:s390x (1.8.1-2) ...
178s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
178s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ...
178s Setting up fonts-dejavu-mono (2.37-8) ...
178s Setting up libmpc3:s390x (1.3.1-1) ...
178s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ...
178s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ...
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178s Setting up fonts-dejavu-core (2.37-8) ...
178s Setting up pkgconf-bin (1.8.1-2) ...
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178s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ...
178s Setting up libwebp7:s390x (1.3.2-0.4) ...
178s Setting up liblzma-dev:s390x (5.4.5-0.3) ...
178s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ...
178s Setting up libpcre2-posix3:s390x (10.42-4ubuntu1) ...
178s Setting up libnsl-dev:s390x (1.3.0-3) ...
178s Setting up libcrypt-dev:s390x (1:4.4.36-4) ...
178s Setting up libasan8:s390x (14-20240303-1ubuntu1) ...
178s Setting up libharfbuzz0b:s390x (8.3.0-2) ...
178s Setting up libthai-data (0.1.29-2) ...
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178s Setting up libisl23:s390x (0.26-3) ...
178s Setting up libc-dev-bin (2.39-0ubuntu2) ...
178s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
178s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
178s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ...
178s Setting up libblas-dev:s390x (3.12.0-3) ...
178s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
178s Setting up dctrl-tools (2.24-3build2) ...
178s Setting up libitm1:s390x (14-20240303-1ubuntu1) ...
178s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
178s Setting up libice6:s390x (2:1.0.10-1build2) ...
178s Setting up liblapack3:s390x (3.12.0-3) ...
178s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
178s Setting up libcurl4t64:s390x (8.5.0-2ubuntu7) ...
178s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
178s Setting up pkgconf:s390x (1.8.1-2) ...
178s Setting up libthai0:s390x (0.1.29-2) ...
178s Setting up cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
178s Setting up liblapack-dev:s390x (3.12.0-3) ...
178s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
178s Setting up pkg-config:s390x (1.8.1-2) ...
178s Setting up libgcc-13-dev:s390x (13.2.0-17ubuntu2) ...
178s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ...
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178s Setting up curl (8.5.0-2ubuntu7) ...
178s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ...
178s Setting up libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ...
178s Setting up libsm6:s390x (2:1.2.3-1build2) ...
178s Setting up libicu-dev:s390x (74.2-1ubuntu1) ...
178s Setting up libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ...
178s Setting up libbz2-dev:s390x (1.0.8-5ubuntu1) ...
178s Setting up fontconfig (2.15.0-1ubuntu1) ...
180s Regenerating fonts cache... done.
180s Setting up libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ...
180s Setting up libxft2:s390x (2.3.6-1) ...
180s Setting up libboost1.83-dev:s390x (1.83.0-2ubuntu1) ...
180s Setting up libncurses-dev:s390x (6.4+20240113-1ubuntu1) ...
180s Setting up libpcre2-dev:s390x (10.42-4ubuntu1) ...
180s Setting up cpp-13 (13.2.0-17ubuntu2) ...
180s Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
180s Setting up libtk8.6:s390x (8.6.13-2) ...
180s Setting up libpango-1.0-0:s390x (1.51.0+ds-4) ...
180s Setting up libreadline-dev:s390x (8.2-3) ...
180s Setting up libcairo2:s390x (1.18.0-1) ...
180s Setting up gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
180s Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
180s Setting up g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
180s Setting up gcc-13 (13.2.0-17ubuntu2) ...
180s Setting up libxt6:s390x (1:1.2.1-1.1) ...
180s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ...
180s Setting up cpp (4:13.2.0-7ubuntu1) ...
180s Setting up gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
180s Setting up libboost-dev:s390x (1.83.0.1ubuntu2) ...
180s Setting up libpangoft2-1.0-0:s390x (1.51.0+ds-4) ...
180s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
180s Setting up libpangocairo-1.0-0:s390x (1.51.0+ds-4) ...
180s Setting up g++-13 (13.2.0-17ubuntu2) ...
180s Setting up gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
180s Setting up libpng-dev:s390x (1.6.43-1) ...
180s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
180s Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
180s Setting up gcc (4:13.2.0-7ubuntu1) ...
180s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
180s Setting up r-base-core (4.3.2-1build1) ...
180s 
180s Creating config file /etc/R/Renviron with new version
180s Setting up r-cran-crayon (1.5.2-1) ...
180s Setting up r-cran-futile.options (1.0.1-3build1) ...
180s Setting up r-cran-lattice (0.22-5-1) ...
180s Setting up r-cran-formatr (1.14-1) ...
180s Setting up r-cran-xml (3.99-0.16.1-1) ...
180s Setting up g++ (4:13.2.0-7ubuntu1) ...
180s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
180s Setting up r-cran-statmod (1.5.0-1) ...
180s Setting up build-essential (12.10ubuntu1) ...
180s Setting up r-cran-r6 (2.5.1-1) ...
180s Setting up r-cran-magrittr (2.0.3-1) ...
180s Setting up r-cran-rappdirs (0.3.3-1) ...
180s Setting up r-cran-filelock (1.0.3-1) ...
180s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
180s Setting up r-cran-littler (0.3.19-1) ...
180s Setting up r-cran-bh (1.84.0-1) ...
180s Setting up r-cran-curl (5.2.0+dfsg-1) ...
180s Setting up r-cran-codetools (0.2-19-1) ...
180s Setting up r-bioc-biocgenerics (0.48.1-2) ...
180s Setting up r-cran-rlang (1.1.3-1) ...
180s Setting up r-cran-matrixstats (1.2.0-1) ...
180s Setting up r-bioc-matrixgenerics (1.14.0-1) ...
180s Setting up r-cran-sys (3.4.2-1) ...
180s Setting up r-cran-plogr (0.2.0-3build1) ...
180s Setting up r-cran-withr (2.5.0-1) ...
180s Setting up r-cran-mime (0.12-1) ...
180s Setting up r-cran-generics (0.1.3-1) ...
180s Setting up r-cran-abind (1.4-5-2) ...
180s Setting up r-cran-digest (0.6.34-1) ...
180s Setting up r-cran-yaml (2.3.8-1) ...
180s Setting up r-cran-lambda.r (1.2.4-2build1) ...
180s Setting up r-cran-dbi (1.2.2-1) ...
180s Setting up r-cran-prettyunits (1.2.0-1) ...
180s Setting up r-cran-fansi (1.0.5-1) ...
180s Setting up r-cran-snow (1:0.4.4-2) ...
180s Setting up r-cran-glue (1.7.0-1) ...
180s Setting up r-cran-bit (4.0.5-1) ...
180s Setting up r-cran-xtable (1:1.8-4-2) ...
180s Setting up r-cran-cli (3.6.2-1) ...
180s Setting up gfortran (4:13.2.0-7ubuntu1) ...
180s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
180s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
180s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
180s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
180s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
180s Setting up r-cran-bitops (1.0-7-1) ...
180s Setting up r-cran-bit64 (4.0.5-1) ...
180s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
180s Setting up r-cran-askpass (1.2.0-1) ...
180s Setting up r-cran-fastmap (1.1.1-1) ...
180s Setting up r-cran-png (0.1-8-1) ...
180s Setting up r-bioc-biobase (2.62.0-1) ...
180s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
180s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
180s Setting up r-cran-utf8 (1.2.4-1) ...
180s Setting up r-cran-stringi (1.8.3-1) ...
180s Setting up r-cran-cpp11 (0.4.7-1) ...
180s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
180s Setting up r-cran-runit (0.4.32-3) ...
180s Setting up r-cran-futile.logger (1.4.3-4build1) ...
180s Setting up r-bioc-limma (3.58.1+dfsg-1) ...
180s Setting up r-cran-matrix (1.6-5-1) ...
180s Setting up r-cran-cachem (1.0.8-1) ...
180s Setting up r-bioc-iranges (2.36.0-1) ...
180s Setting up r-cran-rjson (0.2.21-1) ...
180s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
180s Setting up r-cran-restfulr (0.0.15-1) ...
180s Setting up r-cran-vctrs (0.6.5-1) ...
180s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
180s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
180s Setting up r-base-dev (4.3.2-1build1) ...
180s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
180s Setting up r-cran-stringr (1.5.1-1) ...
180s Setting up r-bioc-biocparallel (1.36.0-1) ...
180s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ...
180s Setting up r-cran-xml2 (1.3.6-1) ...
180s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
180s Setting up r-cran-survival (3.5-8-1) ...
180s Setting up r-bioc-biocio (1.12.0+dfsg-1) ...
180s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
180s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
180s Setting up r-cran-httr (1.4.7+dfsg-1) ...
180s Setting up r-cran-hms (1.1.3-1) ...
180s Setting up r-cran-memoise (2.0.1-1) ...
180s Setting up r-cran-purrr (1.0.2-1) ...
180s Setting up r-cran-blob (1.2.4-1) ...
180s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
180s Setting up r-bioc-xvector (0.42.0-1) ...
180s Setting up r-cran-dplyr (1.1.4-1) ...
180s Setting up r-cran-rsqlite (2.3.4-1) ...
180s Setting up r-cran-progress (1.2.3-1) ...
180s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
180s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
180s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
180s Setting up r-cran-tidyr (1.3.1-1) ...
180s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ...
180s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ...
180s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
180s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
180s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ...
180s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
180s Setting up r-bioc-annotationdbi (1.64.1-1) ...
180s Setting up r-bioc-annotate (1.80.0+dfsg-1) ...
180s Setting up r-bioc-biomart (2.58.2+dfsg-1) ...
180s Setting up r-bioc-genefilter (1.84.0-1) ...
180s Setting up r-bioc-genomicalignments (1.38.2-1) ...
180s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ...
180s Setting up r-bioc-rtracklayer (1.62.0-1) ...
180s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ...
180s Setting up r-bioc-bsgenome (1.70.2-1) ...
180s Setting up autopkgtest-satdep (0) ...
180s Processing triggers for man-db (2.12.0-3) ...
181s Processing triggers for install-info (7.1-3) ...
181s Processing triggers for libc-bin (2.39-0ubuntu2) ...
187s (Reading database ... 82647 files and directories currently installed.)
187s Removing autopkgtest-satdep (0) ...
188s autopkgtest [18:57:05]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
188s autopkgtest [18:57:05]: test pkg-r-autopkgtest: [-----------------------
188s Test: Try to load the R library rtracklayer
188s 
188s R version 4.3.2 (2023-10-31) -- "Eye Holes"
188s Copyright (C) 2023 The R Foundation for Statistical Computing
188s Platform: s390x-ibm-linux-gnu (64-bit)
188s 
188s R is free software and comes with ABSOLUTELY NO WARRANTY.
188s You are welcome to redistribute it under certain conditions.
188s Type 'license()' or 'licence()' for distribution details.
188s 
188s R is a collaborative project with many contributors.
188s Type 'contributors()' for more information and
188s 'citation()' on how to cite R or R packages in publications.
188s 
188s Type 'demo()' for some demos, 'help()' for on-line help, or
188s 'help.start()' for an HTML browser interface to help.
188s Type 'q()' to quit R.
188s 
188s > library('rtracklayer')
188s Loading required package: GenomicRanges
188s Loading required package: stats4
188s Loading required package: BiocGenerics
188s 
188s Attaching package: ‘BiocGenerics’
188s 
188s The following objects are masked from ‘package:stats’:
188s 
188s     IQR, mad, sd, var, xtabs
188s 
188s The following objects are masked from ‘package:base’:
188s 
188s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
188s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
188s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
188s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
188s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
188s     table, tapply, union, unique, unsplit, which.max, which.min
188s 
188s Loading required package: S4Vectors
189s 
189s Attaching package: ‘S4Vectors’
189s 
189s The following object is masked from ‘package:utils’:
189s 
189s     findMatches
189s 
189s The following objects are masked from ‘package:base’:
189s 
189s     expand.grid, I, unname
189s 
189s Loading required package: IRanges
190s Loading required package: GenomeInfoDb
198s > 
198s > 
198s Other tests are currently unsupported!
198s They will be progressively added.
198s autopkgtest [18:57:15]: test pkg-r-autopkgtest: -----------------------]
198s autopkgtest [18:57:15]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
198s pkg-r-autopkgtest    PASS
199s autopkgtest [18:57:16]: @@@@@@@@@@@@@@@@@@@@ summary
199s pkg-r-autopkgtest    PASS
209s Creating nova instance adt-noble-s390x-r-bioc-rtracklayer-20240316-185357-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...