0s autopkgtest [22:08:50]: starting date and time: 2024-04-08 22:08:50+0000 0s autopkgtest [22:08:50]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [22:08:50]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jhzchr5c/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:curl --apt-upgrade r-bioc-rsamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=curl/8.5.0-2ubuntu10 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-s390x-3.secgroup --name adt-noble-s390x-r-bioc-rsamtools-20240408-220850-juju-7f2275-prod-proposed-migration-environment-3-a78a6115-70b0-45f3-8d62-b84590c8abb9 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 187s autopkgtest [22:11:57]: testbed dpkg architecture: s390x 187s autopkgtest [22:11:57]: testbed apt version: 2.7.14build2 187s autopkgtest [22:11:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 188s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 188s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [358 kB] 188s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4680 B] 188s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [831 kB] 188s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [10.6 kB] 188s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [311 kB] 188s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 188s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1192 B] 188s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 188s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [909 kB] 189s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 189s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [5120 B] 189s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 190s Fetched 2558 kB in 1s (2326 kB/s) 190s Reading package lists... 193s Reading package lists... 193s Building dependency tree... 193s Reading state information... 193s Calculating upgrade... 194s The following packages will be upgraded: 194s bash curl libcurl3t64-gnutls libcurl4t64 libpython3.12-minimal 194s libpython3.12-stdlib libsasl2-2 libsasl2-modules libsasl2-modules-db 194s python3-gi python3.12 python3.12-minimal 194s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 194s Need to get 8183 kB of archives. 194s After this operation, 280 kB disk space will be freed. 194s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x bash s390x 5.2.21-2ubuntu4 [845 kB] 194s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x python3.12 s390x 3.12.2-5ubuntu3 [644 kB] 194s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12-stdlib s390x 3.12.2-5ubuntu3 [2066 kB] 194s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x python3.12-minimal s390x 3.12.2-5ubuntu3 [2459 kB] 194s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12-minimal s390x 3.12.2-5ubuntu3 [830 kB] 195s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x python3-gi s390x 3.48.2-1 [236 kB] 195s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu10 [227 kB] 195s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu10 [363 kB] 195s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl3t64-gnutls s390x 8.5.0-2ubuntu10 [356 kB] 195s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-modules-db s390x 2.1.28+dfsg1-5ubuntu3 [21.3 kB] 195s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-2 s390x 2.1.28+dfsg1-5ubuntu3 [57.8 kB] 195s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-modules s390x 2.1.28+dfsg1-5ubuntu3 [76.7 kB] 195s Fetched 8183 kB in 1s (9090 kB/s) 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78332 files and directories currently installed.) 195s Preparing to unpack .../bash_5.2.21-2ubuntu4_s390x.deb ... 195s Unpacking bash (5.2.21-2ubuntu4) over (5.2.21-2ubuntu2) ... 195s Setting up bash (5.2.21-2ubuntu4) ... 195s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78332 files and directories currently installed.) 195s Preparing to unpack .../00-python3.12_3.12.2-5ubuntu3_s390x.deb ... 195s Unpacking python3.12 (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 195s Preparing to unpack .../01-libpython3.12-stdlib_3.12.2-5ubuntu3_s390x.deb ... 195s Unpacking libpython3.12-stdlib:s390x (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 196s Preparing to unpack .../02-python3.12-minimal_3.12.2-5ubuntu3_s390x.deb ... 196s Unpacking python3.12-minimal (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 196s Preparing to unpack .../03-libpython3.12-minimal_3.12.2-5ubuntu3_s390x.deb ... 196s Unpacking libpython3.12-minimal:s390x (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 196s Preparing to unpack .../04-python3-gi_3.48.2-1_s390x.deb ... 196s Unpacking python3-gi (3.48.2-1) over (3.48.1-1build1) ... 196s Preparing to unpack .../05-curl_8.5.0-2ubuntu10_s390x.deb ... 196s Unpacking curl (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 196s Preparing to unpack .../06-libcurl4t64_8.5.0-2ubuntu10_s390x.deb ... 196s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 196s Preparing to unpack .../07-libcurl3t64-gnutls_8.5.0-2ubuntu10_s390x.deb ... 196s Unpacking libcurl3t64-gnutls:s390x (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 196s Preparing to unpack .../08-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3_s390x.deb ... 196s Unpacking libsasl2-modules-db:s390x (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 196s Preparing to unpack .../09-libsasl2-2_2.1.28+dfsg1-5ubuntu3_s390x.deb ... 196s Unpacking libsasl2-2:s390x (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 196s Preparing to unpack .../10-libsasl2-modules_2.1.28+dfsg1-5ubuntu3_s390x.deb ... 196s Unpacking libsasl2-modules:s390x (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 196s Setting up libcurl4t64:s390x (8.5.0-2ubuntu10) ... 196s Setting up libsasl2-modules:s390x (2.1.28+dfsg1-5ubuntu3) ... 196s Setting up libpython3.12-minimal:s390x (3.12.2-5ubuntu3) ... 196s Setting up libcurl3t64-gnutls:s390x (8.5.0-2ubuntu10) ... 196s Setting up libsasl2-modules-db:s390x (2.1.28+dfsg1-5ubuntu3) ... 196s Setting up python3-gi (3.48.2-1) ... 197s Setting up libsasl2-2:s390x (2.1.28+dfsg1-5ubuntu3) ... 197s Setting up curl (8.5.0-2ubuntu10) ... 197s Setting up python3.12-minimal (3.12.2-5ubuntu3) ... 198s Setting up libpython3.12-stdlib:s390x (3.12.2-5ubuntu3) ... 198s Setting up python3.12 (3.12.2-5ubuntu3) ... 200s Processing triggers for systemd (255.4-1ubuntu7) ... 200s Processing triggers for man-db (2.12.0-4build1) ... 200s Processing triggers for debianutils (5.17build1) ... 200s Processing triggers for install-info (7.1-3build2) ... 201s Processing triggers for libc-bin (2.39-0ubuntu8) ... 201s Reading package lists... 201s Building dependency tree... 201s Reading state information... 202s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 202s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 202s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 202s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 202s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 204s Reading package lists... 204s Reading package lists... 204s Building dependency tree... 204s Reading state information... 205s Calculating upgrade... 205s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 205s Reading package lists... 205s Building dependency tree... 205s Reading state information... 206s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 209s autopkgtest [22:12:19]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr 4 21:54:17 UTC 2024 209s autopkgtest [22:12:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rsamtools 211s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1build1 (dsc) [2473 B] 211s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1build1 (tar) [2463 kB] 211s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1build1 (diff) [6916 B] 211s gpgv: Signature made Sat Mar 16 06:57:45 2024 UTC 211s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 211s gpgv: issuer "steve.langasek@ubuntu.com" 211s gpgv: Can't check signature: No public key 211s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsamtools_2.18.0+dfsg-1build1.dsc: no acceptable signature found 212s autopkgtest [22:12:22]: testing package r-bioc-rsamtools version 2.18.0+dfsg-1build1 212s autopkgtest [22:12:22]: build not needed 214s autopkgtest [22:12:24]: test pkg-r-autopkgtest: preparing testbed 216s Reading package lists... 216s Building dependency tree... 216s Reading state information... 216s Starting pkgProblemResolver with broken count: 0 216s Starting 2 pkgProblemResolver with broken count: 0 216s Done 217s The following additional packages will be installed: 217s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu 217s dctrl-tools fontconfig fonts-font-awesome fonts-glyphicons-halflings 217s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-s390x-linux-gnu 217s g++-s390x-linux-gnu gcc gcc-13 gcc-13-base gcc-13-s390x-linux-gnu 217s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 217s gfortran-s390x-linux-gnu icu-devtools javascript-common libasan8 libatomic1 217s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 217s libbz2-dev libcairo2 libcc1-0 libdatrie1 libgcc-13-dev libgfortran-13-dev 217s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev 217s libio-string-perl libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev 217s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 217s libjs-highlight.js libjs-jquery libjs-jquery-datatables 217s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 217s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 217s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 217s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 217s liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 217s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 217s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 217s libpotrace0 libptexenc1 libreadline-dev libsm6 libstdc++-13-dev libsynctex2 217s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtk8.6 libubsan1 217s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxrender1 217s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 217s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 217s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 217s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 217s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 217s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 217s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 217s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 217s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 217s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 217s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 217s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 217s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 217s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 217s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 217s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 217s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 217s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 217s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 217s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 217s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 217s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 217s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 217s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 217s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 217s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 217s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 217s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 217s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 217s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml t1utils 217s tex-common texlive-base texlive-bibtex-extra texlive-binaries 217s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 217s Suggested packages: 217s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 217s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 217s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 217s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 217s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 217s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 217s libboost-context1.83-dev libboost-contract1.83-dev 217s libboost-coroutine1.83-dev libboost-date-time1.83-dev 217s libboost-exception1.83-dev libboost-fiber1.83-dev 217s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 217s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 217s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 217s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 217s libboost-numpy1.83-dev libboost-program-options1.83-dev 217s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 217s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 217s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 217s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 217s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 217s icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 217s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 217s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 217s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 217s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 217s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 217s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 217s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 217s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 217s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 217s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 217s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 217s r-cran-r.utils r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter 217s r-cran-markdown r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq 217s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff 217s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-polyclip r-cran-lubridate 217s r-cran-sp r-cran-ggplot2 r-cran-gridextra r-cran-scatterplot3d r-cran-getopt 217s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 217s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 217s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 217s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 217s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 217s texlive-latex-base-doc wp2latex 217s Recommended packages: 217s bzip2-doc node-jquery libpng-tools r-recommended r-doc-html r-cran-testthat 217s r-bioc-biocversion r-cran-remotes r-cran-downlit r-cran-htmlwidgets 217s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 217s r-cran-webshot r-cran-ggplot2 r-cran-thematic r-cran-callr r-cran-covr 217s r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami 217s r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr 217s r-cran-scales r-cran-spelling r-cran-webutils r-cran-rpostgresql 217s r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-survival 217s r-cran-pkgload r-cran-waldo r-cran-cairo r-cran-markdown r-cran-ragg 217s r-cran-readr r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick 217s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 217s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 217s r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis r-cran-dygraphs 217s r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-data.table 217s r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 217s lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 217s x11-utils x11-xserver-utils 217s The following NEW packages will be installed: 217s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 217s cpp-s390x-linux-gnu dctrl-tools fontconfig fonts-font-awesome 217s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 217s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-base 217s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 217s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 217s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 217s libblas3 libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 217s libdatrie1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 217s libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl libisl23 217s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap 217s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 217s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 217s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 217s libjs-popper.js libjs-prettify libjs-sifter.js 217s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 217s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 217s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 217s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 217s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 217s libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 217s libthai-data libthai0 libtk8.6 libubsan1 libxaw7 libxcb-render0 libxcb-shm0 217s libxft2 libxi6 libxmu6 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler 217s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 217s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 217s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 217s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 217s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 217s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 217s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 217s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 217s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 217s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 217s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 217s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 217s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 217s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 217s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 217s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 217s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 217s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 217s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 217s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 217s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 217s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 217s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 217s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 217s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 217s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 217s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 217s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 217s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 217s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml t1utils 217s tex-common texlive-base texlive-bibtex-extra texlive-binaries 217s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 217s 0 upgraded, 263 newly installed, 0 to remove and 0 not upgraded. 217s Need to get 427 MB/427 MB of archives. 217s After this operation, 1387 MB of additional disk space will be used. 217s Get:1 /tmp/autopkgtest.PYHqhf/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [792 B] 217s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-base s390x 13.2.0-23ubuntu3 [48.6 kB] 217s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 217s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 218s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [9936 kB] 218s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-23ubuntu3 [1026 B] 218s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 218s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 218s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240330-1ubuntu2 [49.8 kB] 218s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240330-1ubuntu2 [151 kB] 218s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240330-1ubuntu2 [31.1 kB] 218s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240330-1ubuntu2 [9386 B] 218s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240330-1ubuntu2 [2994 kB] 218s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240330-1ubuntu2 [1186 kB] 218s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-23ubuntu3 [1003 kB] 218s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [19.1 MB] 219s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-23ubuntu3 [469 kB] 219s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 219s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 219s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-23ubuntu3 [2494 kB] 219s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [11.3 MB] 219s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-23ubuntu3 [14.5 kB] 219s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 219s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 219s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 219s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 219s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1.1ubuntu2 [191 kB] 219s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 219s Get:29 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 219s Get:30 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 219s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 219s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240330-1ubuntu2 [598 kB] 219s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-23ubuntu3 [623 kB] 219s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [10.4 MB] 219s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-23ubuntu3 [10.9 kB] 219s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 219s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 219s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 219s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 219s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 219s Get:41 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 219s Get:42 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 220s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 220s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 220s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2.1ubuntu3 [10.7 MB] 220s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 220s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 220s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 220s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 220s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 220s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 220s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-3 [589 kB] 220s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 220s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 220s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2build2 [515 kB] 220s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 220s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 220s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 220s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 220s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 220s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 220s Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 220s Get:63 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 220s Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 220s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 220s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 220s Get:67 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 220s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 220s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 220s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 220s Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 220s Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 220s Get:73 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 220s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 220s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 220s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 220s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9build3 [66.6 kB] 220s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 221s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 221s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3build2 [179 kB] 221s Get:81 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 221s Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 221s Get:83 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 221s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.52.1+ds-1build1 [243 kB] 221s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.52.1+ds-1build1 [44.0 kB] 221s Get:86 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.52.1+ds-1build1 [28.8 kB] 221s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 221s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 221s Get:89 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 221s Get:90 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 221s Get:91 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 221s Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 221s Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 221s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3.1ubuntu2 [904 kB] 221s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-5build1 [277 kB] 221s Get:96 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 221s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9build3 [41.6 kB] 221s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-4build1 [189 kB] 221s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 221s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9build3 [65.1 kB] 221s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.14+dfsg-1build1 [1038 kB] 221s Get:102 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 221s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9build3 [132 kB] 221s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 221s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 221s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.14-1build1 [833 kB] 221s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 222s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB] 222s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1build2 [204 kB] 222s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 222s Get:111 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13t64 s390x 0.13.72+dfsg.1-1.2build1 [28.6 kB] 222s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 222s Get:113 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 222s Get:114 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 222s Get:115 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.3-2build2 [27.1 MB] 223s Get:116 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 223s Get:117 http://ftpmaster.internal/ubuntu noble/universe s390x littler all 0.3.19-1 [2472 B] 223s Get:118 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 223s Get:119 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 223s Get:120 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 223s Get:121 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 223s Get:122 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 225s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 225s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 225s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 225s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.6.1+really5.4.5-1 [184 kB] 225s Get:127 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.3-2build2 [4334 B] 225s Get:128 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 225s Get:129 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 225s Get:130 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 225s Get:131 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 225s Get:132 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 226s Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 226s Get:134 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 226s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 226s Get:136 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 226s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 226s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 226s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 226s Get:140 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 226s Get:141 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 226s Get:142 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 226s Get:143 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 226s Get:144 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 226s Get:145 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 226s Get:146 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 226s Get:147 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 226s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 226s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1build2 [177 kB] 226s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 226s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 226s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 226s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 226s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2build2 [403 kB] 226s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 226s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 226s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB] 226s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 226s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 226s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 226s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1build2 [794 kB] 226s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 227s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 227s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 227s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 227s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 227s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 228s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 228s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 228s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 228s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 228s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 228s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 228s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 228s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 228s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 228s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 228s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 228s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 228s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 228s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 228s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 228s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 228s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 228s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 228s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 228s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 228s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 228s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 228s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 228s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 228s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 228s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 228s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 228s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 228s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 228s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 228s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 228s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 228s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 228s Get:201 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 228s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 229s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 229s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1build2 [230 kB] 229s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 229s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 229s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 229s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 229s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 229s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 229s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 230s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 230s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 230s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 230s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1build2 [519 kB] 230s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 230s Get:217 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 230s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 230s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 230s Get:220 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 230s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 230s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 230s Get:223 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 230s Get:224 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 230s Get:225 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 230s Get:226 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9build3 [9354 kB] 230s Get:227 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 231s Get:228 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 231s Get:229 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 234s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 234s Get:231 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 234s Get:232 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 234s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 234s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 234s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 234s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 234s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 234s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 234s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 234s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 234s Get:241 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 234s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 234s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 234s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 234s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 234s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 234s Get:247 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-3build2 [1409 kB] 234s Get:248 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1build1 [3700 kB] 234s Get:249 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 235s Get:250 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 235s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 235s Get:252 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 235s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1823 kB] 235s Get:254 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hwriter all 1.3.2.1-1 [106 kB] 235s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jpeg s390x 0.1-10-1 [31.3 kB] 235s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 235s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-deldir s390x 2.0-4-1build1 [271 kB] 235s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcppeigen s390x 0.3.4.0.0-1build1 [1428 kB] 235s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-interp s390x 1.1-6-1 [1465 kB] 235s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 235s Get:261 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-latticeextra all 0.6-30-1 [2198 kB] 235s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-shortread s390x 1.60.0-2 [5204 kB] 235s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-runit all 0.4.33-1 [377 kB] 237s Preconfiguring packages ... 237s Fetched 427 MB in 18s (23.3 MB/s) 238s Selecting previously unselected package gcc-13-base:s390x. 238s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78333 files and directories currently installed.) 238s Preparing to unpack .../000-gcc-13-base_13.2.0-23ubuntu3_s390x.deb ... 238s Unpacking gcc-13-base:s390x (13.2.0-23ubuntu3) ... 238s Selecting previously unselected package libisl23:s390x. 238s Preparing to unpack .../001-libisl23_0.26-3_s390x.deb ... 238s Unpacking libisl23:s390x (0.26-3) ... 238s Selecting previously unselected package libmpc3:s390x. 238s Preparing to unpack .../002-libmpc3_1.3.1-1_s390x.deb ... 238s Unpacking libmpc3:s390x (1.3.1-1) ... 238s Selecting previously unselected package cpp-13-s390x-linux-gnu. 238s Preparing to unpack .../003-cpp-13-s390x-linux-gnu_13.2.0-23ubuntu3_s390x.deb ... 238s Unpacking cpp-13-s390x-linux-gnu (13.2.0-23ubuntu3) ... 238s Selecting previously unselected package cpp-13. 238s Preparing to unpack .../004-cpp-13_13.2.0-23ubuntu3_s390x.deb ... 238s Unpacking cpp-13 (13.2.0-23ubuntu3) ... 238s Selecting previously unselected package cpp-s390x-linux-gnu. 238s Preparing to unpack .../005-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 238s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 238s Selecting previously unselected package cpp. 238s Preparing to unpack .../006-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 238s Unpacking cpp (4:13.2.0-7ubuntu1) ... 238s Selecting previously unselected package libcc1-0:s390x. 238s Preparing to unpack .../007-libcc1-0_14-20240330-1ubuntu2_s390x.deb ... 238s Unpacking libcc1-0:s390x (14-20240330-1ubuntu2) ... 238s Selecting previously unselected package libgomp1:s390x. 238s Preparing to unpack .../008-libgomp1_14-20240330-1ubuntu2_s390x.deb ... 238s Unpacking libgomp1:s390x (14-20240330-1ubuntu2) ... 238s Selecting previously unselected package libitm1:s390x. 238s Preparing to unpack .../009-libitm1_14-20240330-1ubuntu2_s390x.deb ... 238s Unpacking libitm1:s390x (14-20240330-1ubuntu2) ... 238s Selecting previously unselected package libatomic1:s390x. 238s Preparing to unpack .../010-libatomic1_14-20240330-1ubuntu2_s390x.deb ... 238s Unpacking libatomic1:s390x (14-20240330-1ubuntu2) ... 238s Selecting previously unselected package libasan8:s390x. 238s Preparing to unpack .../011-libasan8_14-20240330-1ubuntu2_s390x.deb ... 238s Unpacking libasan8:s390x (14-20240330-1ubuntu2) ... 238s Selecting previously unselected package libubsan1:s390x. 238s Preparing to unpack .../012-libubsan1_14-20240330-1ubuntu2_s390x.deb ... 238s Unpacking libubsan1:s390x 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unselected package build-essential. 240s Preparing to unpack .../023-build-essential_12.10ubuntu1_s390x.deb ... 240s Unpacking build-essential (12.10ubuntu1) ... 240s Selecting previously unselected package dctrl-tools. 240s Preparing to unpack .../024-dctrl-tools_2.24-3build2_s390x.deb ... 240s Unpacking dctrl-tools (2.24-3build2) ... 240s Selecting previously unselected package fontconfig. 240s Preparing to unpack .../025-fontconfig_2.15.0-1.1ubuntu2_s390x.deb ... 240s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 240s Selecting previously unselected package fonts-font-awesome. 240s Preparing to unpack .../026-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 240s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 240s Selecting previously unselected package fonts-glyphicons-halflings. 240s Preparing to unpack .../027-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 240s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 240s Selecting previously unselected package fonts-lmodern. 240s Preparing to unpack .../028-fonts-lmodern_2.005-1_all.deb ... 240s Unpacking fonts-lmodern (2.005-1) ... 240s Selecting previously unselected package fonts-mathjax. 240s Preparing to unpack .../029-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 240s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 240s Selecting previously unselected package libgfortran5:s390x. 241s Preparing to unpack .../030-libgfortran5_14-20240330-1ubuntu2_s390x.deb ... 241s Unpacking libgfortran5:s390x (14-20240330-1ubuntu2) ... 241s Selecting previously unselected package libgfortran-13-dev:s390x. 241s Preparing to unpack .../031-libgfortran-13-dev_13.2.0-23ubuntu3_s390x.deb ... 241s Unpacking libgfortran-13-dev:s390x (13.2.0-23ubuntu3) ... 241s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 241s Preparing to unpack .../032-gfortran-13-s390x-linux-gnu_13.2.0-23ubuntu3_s390x.deb ... 241s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-23ubuntu3) ... 241s Selecting previously unselected package gfortran-13. 241s Preparing to unpack .../033-gfortran-13_13.2.0-23ubuntu3_s390x.deb ... 241s Unpacking gfortran-13 (13.2.0-23ubuntu3) ... 241s Selecting previously unselected package gfortran-s390x-linux-gnu. 241s Preparing to unpack .../034-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 241s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 241s Selecting previously unselected package gfortran. 241s Preparing to unpack .../035-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 241s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 241s Selecting previously unselected package icu-devtools. 241s Preparing to unpack .../036-icu-devtools_74.2-1ubuntu1_s390x.deb ... 241s Unpacking icu-devtools (74.2-1ubuntu1) ... 241s Selecting previously unselected package javascript-common. 241s Preparing to unpack .../037-javascript-common_11+nmu1_all.deb ... 241s Unpacking javascript-common (11+nmu1) ... 241s Selecting previously unselected package libio-string-perl. 241s Preparing to unpack .../038-libio-string-perl_1.08-4_all.deb ... 241s Unpacking libio-string-perl (1.08-4) ... 241s Selecting previously unselected package liblatex-tounicode-perl. 241s Preparing to unpack .../039-liblatex-tounicode-perl_0.54-2_all.deb ... 241s Unpacking liblatex-tounicode-perl (0.54-2) ... 241s Selecting previously unselected package libbibtex-parser-perl. 241s Preparing to unpack .../040-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 241s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 241s Selecting previously unselected package libblas3:s390x. 241s Preparing to unpack .../041-libblas3_3.12.0-3_s390x.deb ... 241s Unpacking libblas3:s390x (3.12.0-3) ... 241s Selecting previously unselected package libblas-dev:s390x. 241s Preparing to unpack .../042-libblas-dev_3.12.0-3_s390x.deb ... 241s Unpacking libblas-dev:s390x (3.12.0-3) ... 241s Selecting previously unselected package libboost1.83-dev:s390x. 241s Preparing to unpack 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previously unselected package libjpeg-dev:s390x. 245s Preparing to unpack .../059-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 245s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 245s Selecting previously unselected package libjs-bootstrap. 245s Preparing to unpack .../060-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 245s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 245s Selecting previously unselected package libjs-popper.js. 245s Preparing to unpack .../061-libjs-popper.js_1.16.1+ds-6_all.deb ... 245s Unpacking libjs-popper.js (1.16.1+ds-6) ... 245s Selecting previously unselected package libjs-bootstrap4. 245s Preparing to unpack .../062-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 245s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 245s Selecting previously unselected package libjs-d3. 245s Preparing to unpack .../063-libjs-d3_3.5.17-4_all.deb ... 245s Unpacking libjs-d3 (3.5.17-4) ... 245s Selecting previously unselected package libjs-es5-shim. 245s Preparing to unpack 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.../099-libtcl8.6_8.6.14+dfsg-1build1_s390x.deb ... 247s Unpacking libtcl8.6:s390x (8.6.14+dfsg-1build1) ... 247s Selecting previously unselected package libteckit0:s390x. 247s Preparing to unpack .../100-libteckit0_2.5.12+ds1-1_s390x.deb ... 247s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 247s Selecting previously unselected package libtexlua53-5:s390x. 247s Preparing to unpack .../101-libtexlua53-5_2023.20230311.66589-9build3_s390x.deb ... 247s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9build3) ... 247s Selecting previously unselected package libxft2:s390x. 247s Preparing to unpack .../102-libxft2_2.3.6-1_s390x.deb ... 247s Unpacking libxft2:s390x (2.3.6-1) ... 247s Selecting previously unselected package libxss1:s390x. 247s Preparing to unpack .../103-libxss1_1%3a1.2.3-1build2_s390x.deb ... 247s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 247s Selecting previously unselected package libtk8.6:s390x. 247s Preparing to unpack .../104-libtk8.6_8.6.14-1build1_s390x.deb ... 247s Unpacking libtk8.6:s390x (8.6.14-1build1) ... 247s Selecting previously unselected package libxt6t64:s390x. 247s Preparing to unpack .../105-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 247s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 247s Selecting previously unselected package libxmu6:s390x. 247s Preparing to unpack .../106-libxmu6_2%3a1.1.3-3build2_s390x.deb ... 247s Unpacking libxmu6:s390x (2:1.1.3-3build2) ... 247s Selecting previously unselected package libxaw7:s390x. 247s Preparing to unpack .../107-libxaw7_2%3a1.0.14-1build2_s390x.deb ... 247s Unpacking libxaw7:s390x (2:1.0.14-1build2) ... 247s Selecting previously unselected package libxi6:s390x. 247s Preparing to unpack .../108-libxi6_2%3a1.8.1-1_s390x.deb ... 247s Unpacking libxi6:s390x (2:1.8.1-1) ... 247s Selecting previously unselected package libzzip-0-13t64:s390x. 247s Preparing to unpack .../109-libzzip-0-13t64_0.13.72+dfsg.1-1.2build1_s390x.deb ... 247s Unpacking libzzip-0-13t64:s390x (0.13.72+dfsg.1-1.2build1) ... 247s Selecting previously unselected package zip. 247s Preparing to unpack .../110-zip_3.0-13_s390x.deb ... 247s Unpacking zip (3.0-13) ... 247s Selecting previously unselected package unzip. 247s Preparing to unpack .../111-unzip_6.0-28ubuntu3_s390x.deb ... 247s Unpacking unzip (6.0-28ubuntu3) ... 247s Selecting previously unselected package xdg-utils. 247s Preparing to unpack .../112-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 247s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 247s Selecting previously unselected package r-base-core. 247s Preparing to unpack .../113-r-base-core_4.3.3-2build2_s390x.deb ... 247s Unpacking r-base-core (4.3.3-2build2) ... 247s Selecting previously unselected package r-cran-littler. 247s Preparing to unpack .../114-r-cran-littler_0.3.19-1_s390x.deb ... 247s Unpacking r-cran-littler (0.3.19-1) ... 247s Selecting previously unselected package littler. 247s Preparing to unpack .../115-littler_0.3.19-1_all.deb ... 248s Unpacking littler (0.3.19-1) ... 248s Selecting previously unselected package node-bootstrap-sass. 248s Preparing to unpack .../116-node-bootstrap-sass_3.4.3-2_all.deb ... 248s Unpacking node-bootstrap-sass (3.4.3-2) ... 248s Selecting previously unselected package node-html5shiv. 248s Preparing to unpack .../117-node-html5shiv_3.7.3+dfsg-5_all.deb ... 248s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 248s Selecting previously unselected package node-normalize.css. 248s Preparing to unpack .../118-node-normalize.css_8.0.1-5_all.deb ... 248s Unpacking node-normalize.css (8.0.1-5) ... 248s Selecting previously unselected package pandoc-data. 248s Preparing to unpack .../119-pandoc-data_3.1.3-1_all.deb ... 248s Unpacking pandoc-data (3.1.3-1) ... 248s Selecting previously unselected package pandoc. 248s Preparing to unpack .../120-pandoc_3.1.3+ds-2_s390x.deb ... 248s Unpacking pandoc (3.1.3+ds-2) ... 250s Selecting previously unselected package pkgconf-bin. 250s Preparing to unpack .../121-pkgconf-bin_1.8.1-2_s390x.deb ... 250s Unpacking pkgconf-bin (1.8.1-2) ... 250s Selecting previously unselected package pkgconf:s390x. 250s Preparing to unpack .../122-pkgconf_1.8.1-2_s390x.deb ... 250s Unpacking pkgconf:s390x (1.8.1-2) ... 250s Selecting previously unselected package pkg-config:s390x. 250s Preparing to unpack .../123-pkg-config_1.8.1-2_s390x.deb ... 250s Unpacking pkg-config:s390x (1.8.1-2) ... 250s Selecting previously unselected package liblzma-dev:s390x. 250s Preparing to unpack .../124-liblzma-dev_5.6.1+really5.4.5-1_s390x.deb ... 250s Unpacking liblzma-dev:s390x (5.6.1+really5.4.5-1) ... 250s Selecting previously unselected package r-base-dev. 250s Preparing to unpack .../125-r-base-dev_4.3.3-2build2_all.deb ... 250s Unpacking r-base-dev (4.3.3-2build2) ... 250s Selecting previously unselected package pkg-r-autopkgtest. 250s Preparing to unpack .../126-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 250s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 250s Selecting previously unselected package r-bioc-biocgenerics. 250s Preparing to unpack .../127-r-bioc-biocgenerics_0.48.1-2_all.deb ... 250s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 250s Selecting previously unselected package r-bioc-biobase. 250s Preparing to unpack .../128-r-bioc-biobase_2.62.0-1_s390x.deb ... 250s Unpacking r-bioc-biobase (2.62.0-1) ... 250s Selecting previously unselected package r-bioc-s4vectors. 250s Preparing to unpack .../129-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 250s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 250s Selecting previously unselected package r-bioc-iranges. 250s Preparing to unpack .../130-r-bioc-iranges_2.36.0-1_s390x.deb ... 250s Unpacking r-bioc-iranges (2.36.0-1) ... 250s Selecting previously unselected package r-cran-dbi. 250s Preparing to unpack .../131-r-cran-dbi_1.2.2-1_all.deb ... 250s Unpacking r-cran-dbi (1.2.2-1) ... 250s Selecting previously unselected package r-cran-bit. 250s Preparing to unpack .../132-r-cran-bit_4.0.5-1_s390x.deb ... 250s Unpacking r-cran-bit (4.0.5-1) ... 250s Selecting previously unselected package r-cran-bit64. 250s Preparing to unpack .../133-r-cran-bit64_4.0.5-1_s390x.deb ... 250s Unpacking r-cran-bit64 (4.0.5-1) ... 250s Selecting previously unselected package r-cran-rlang. 250s Preparing to unpack .../134-r-cran-rlang_1.1.3-1_s390x.deb ... 250s Unpacking r-cran-rlang (1.1.3-1) ... 250s Selecting previously unselected package r-cran-cli. 250s Preparing to unpack .../135-r-cran-cli_3.6.2-1_s390x.deb ... 250s Unpacking r-cran-cli (3.6.2-1) ... 251s Selecting previously unselected package r-cran-glue. 251s Preparing to unpack .../136-r-cran-glue_1.7.0-1_s390x.deb ... 251s Unpacking r-cran-glue (1.7.0-1) ... 251s Selecting previously unselected package r-cran-lifecycle. 251s Preparing to unpack .../137-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 251s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 251s Selecting previously unselected package r-cran-vctrs. 251s Preparing to unpack .../138-r-cran-vctrs_0.6.5-1_s390x.deb ... 251s Unpacking r-cran-vctrs (0.6.5-1) ... 251s Selecting previously unselected package r-cran-blob. 251s Preparing to unpack .../139-r-cran-blob_1.2.4-1_all.deb ... 251s Unpacking r-cran-blob (1.2.4-1) ... 251s Selecting previously unselected package r-cran-fastmap. 251s Preparing to unpack .../140-r-cran-fastmap_1.1.1-1_s390x.deb ... 251s Unpacking r-cran-fastmap (1.1.1-1) ... 251s Selecting previously unselected package r-cran-cachem. 251s Preparing to unpack .../141-r-cran-cachem_1.0.8-1_s390x.deb ... 251s Unpacking r-cran-cachem (1.0.8-1) ... 251s Selecting previously unselected package r-cran-memoise. 251s Preparing to unpack .../142-r-cran-memoise_2.0.1-1_all.deb ... 251s Unpacking r-cran-memoise (2.0.1-1) ... 251s Selecting previously unselected package r-cran-pkgconfig. 251s Preparing to unpack .../143-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 251s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 251s Selecting previously unselected package r-cran-plogr. 251s Preparing to unpack .../144-r-cran-plogr_0.2.0-3build1_all.deb ... 251s Unpacking r-cran-plogr (0.2.0-3build1) ... 251s Selecting previously unselected package r-cran-cpp11. 251s Preparing to unpack .../145-r-cran-cpp11_0.4.7-1_all.deb ... 251s Unpacking r-cran-cpp11 (0.4.7-1) ... 251s Selecting previously unselected package r-cran-rsqlite. 251s Preparing to unpack .../146-r-cran-rsqlite_2.3.4-1_s390x.deb ... 251s Unpacking r-cran-rsqlite (2.3.4-1) ... 251s Selecting previously unselected package r-cran-curl. 251s Preparing to unpack .../147-r-cran-curl_5.2.0+dfsg-1build2_s390x.deb ... 251s Unpacking r-cran-curl (5.2.0+dfsg-1build2) ... 251s Selecting previously unselected package r-cran-jsonlite. 251s Preparing to unpack .../148-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 251s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 251s Selecting previously unselected package r-cran-mime. 251s Preparing to unpack .../149-r-cran-mime_0.12-1_s390x.deb ... 251s Unpacking r-cran-mime (0.12-1) ... 251s Selecting previously unselected package r-cran-sys. 251s Preparing to unpack .../150-r-cran-sys_3.4.2-1_s390x.deb ... 251s Unpacking r-cran-sys (3.4.2-1) ... 251s Selecting previously unselected package r-cran-askpass. 251s Preparing to unpack .../151-r-cran-askpass_1.2.0-1_s390x.deb ... 251s Unpacking r-cran-askpass (1.2.0-1) ... 251s Selecting previously unselected package r-cran-openssl. 251s Preparing to unpack .../152-r-cran-openssl_2.1.1+dfsg-2build2_s390x.deb ... 251s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ... 251s Selecting previously unselected package r-cran-r6. 251s Preparing to unpack .../153-r-cran-r6_2.5.1-1_all.deb ... 251s Unpacking r-cran-r6 (2.5.1-1) ... 251s Selecting previously unselected package r-cran-httr. 251s Preparing to unpack .../154-r-cran-httr_1.4.7+dfsg-1_all.deb ... 251s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 251s Selecting previously unselected package r-cran-png. 251s Preparing to unpack .../155-r-cran-png_0.1-8-1build2_s390x.deb ... 251s Unpacking r-cran-png (0.1-8-1build2) ... 251s Selecting previously unselected package r-bioc-zlibbioc. 251s Preparing to unpack .../156-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 251s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 251s Selecting previously unselected package r-bioc-xvector. 251s Preparing to unpack .../157-r-bioc-xvector_0.42.0-1_s390x.deb ... 251s Unpacking r-bioc-xvector (0.42.0-1) ... 251s Selecting previously unselected package r-cran-bitops. 251s Preparing to unpack .../158-r-cran-bitops_1.0-7-1_s390x.deb ... 251s Unpacking r-cran-bitops (1.0-7-1) ... 251s Selecting previously unselected package r-cran-rcurl. 251s Preparing to unpack .../159-r-cran-rcurl_1.98-1.14+dfsg-1build2_s390x.deb ... 251s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1build2) ... 251s Selecting previously unselected package r-bioc-genomeinfodbdata. 251s Preparing to unpack .../160-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 251s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 251s Selecting previously unselected package r-bioc-genomeinfodb. 251s Preparing to unpack .../161-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 251s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 252s Selecting previously unselected package r-cran-crayon. 252s Preparing to unpack .../162-r-cran-crayon_1.5.2-1_all.deb ... 252s Unpacking r-cran-crayon (1.5.2-1) ... 252s Selecting previously unselected package r-bioc-biostrings. 252s Preparing to unpack .../163-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 252s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 252s Selecting previously unselected package r-bioc-keggrest. 252s Preparing to unpack .../164-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 252s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 252s Selecting previously unselected package r-bioc-annotationdbi. 252s Preparing to unpack .../165-r-bioc-annotationdbi_1.64.1-1_all.deb ... 252s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 252s Selecting previously unselected package r-cran-generics. 252s Preparing to unpack .../166-r-cran-generics_0.1.3-1_all.deb ... 252s Unpacking r-cran-generics (0.1.3-1) ... 252s Selecting previously unselected package r-cran-magrittr. 252s Preparing to unpack .../167-r-cran-magrittr_2.0.3-1_s390x.deb ... 252s Unpacking r-cran-magrittr (2.0.3-1) ... 252s Selecting previously unselected package r-cran-fansi. 252s Preparing to unpack .../168-r-cran-fansi_1.0.5-1_s390x.deb ... 252s Unpacking r-cran-fansi (1.0.5-1) ... 252s Selecting previously unselected package r-cran-utf8. 252s Preparing to unpack .../169-r-cran-utf8_1.2.4-1_s390x.deb ... 252s Unpacking r-cran-utf8 (1.2.4-1) ... 252s Selecting previously unselected package r-cran-pillar. 252s Preparing to unpack .../170-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 252s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 252s Selecting previously unselected package r-cran-tibble. 252s Preparing to unpack .../171-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 252s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 252s Selecting previously unselected package r-cran-withr. 252s Preparing to unpack .../172-r-cran-withr_2.5.0-1_all.deb ... 252s Unpacking r-cran-withr (2.5.0-1) ... 252s Selecting previously unselected package r-cran-tidyselect. 252s Preparing to unpack .../173-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 252s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 252s Selecting previously unselected package r-cran-dplyr. 252s Preparing to unpack .../174-r-cran-dplyr_1.1.4-1_s390x.deb ... 252s Unpacking r-cran-dplyr (1.1.4-1) ... 252s Selecting previously unselected package r-cran-purrr. 252s Preparing to unpack .../175-r-cran-purrr_1.0.2-1_s390x.deb ... 252s Unpacking r-cran-purrr (1.0.2-1) ... 252s Selecting previously unselected package r-cran-stringi. 252s Preparing to unpack .../176-r-cran-stringi_1.8.3-1_s390x.deb ... 252s Unpacking r-cran-stringi (1.8.3-1) ... 252s Selecting previously unselected package r-cran-stringr. 252s Preparing to unpack .../177-r-cran-stringr_1.5.1-1_all.deb ... 252s Unpacking r-cran-stringr (1.5.1-1) ... 252s Selecting previously unselected package r-cran-tidyr. 252s Preparing to unpack .../178-r-cran-tidyr_1.3.1-1_s390x.deb ... 252s Unpacking r-cran-tidyr (1.3.1-1) ... 252s Selecting previously unselected package r-cran-dbplyr. 252s Preparing to unpack .../179-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 252s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 252s Selecting previously unselected package r-cran-filelock. 252s Preparing to unpack .../180-r-cran-filelock_1.0.3-1_s390x.deb ... 252s Unpacking r-cran-filelock (1.0.3-1) ... 252s Selecting previously unselected package r-bioc-biocfilecache. 252s Preparing to unpack .../181-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 252s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 252s Selecting previously unselected package r-bioc-biocio. 252s Preparing to unpack .../182-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 252s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 253s Selecting previously unselected package r-cran-formatr. 253s Preparing to unpack .../183-r-cran-formatr_1.14-1_all.deb ... 253s Unpacking r-cran-formatr (1.14-1) ... 253s Selecting previously unselected package r-cran-lambda.r. 253s Preparing to unpack .../184-r-cran-lambda.r_1.2.4-2build1_all.deb ... 253s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 253s Selecting previously unselected package r-cran-futile.options. 253s Preparing to unpack .../185-r-cran-futile.options_1.0.1-3build1_all.deb ... 253s Unpacking r-cran-futile.options (1.0.1-3build1) ... 253s Selecting previously unselected package r-cran-futile.logger. 253s Preparing to unpack .../186-r-cran-futile.logger_1.4.3-4build1_all.deb ... 253s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 253s Selecting previously unselected package r-cran-snow. 253s Preparing to unpack .../187-r-cran-snow_1%3a0.4.4-2_all.deb ... 253s Unpacking r-cran-snow (1:0.4.4-2) ... 253s Selecting previously unselected package r-cran-codetools. 253s Preparing to unpack .../188-r-cran-codetools_0.2-19-1_all.deb ... 253s Unpacking r-cran-codetools (0.2-19-1) ... 253s Selecting previously unselected package r-cran-bh. 253s Preparing to unpack .../189-r-cran-bh_1.84.0-1_all.deb ... 253s Unpacking r-cran-bh (1.84.0-1) ... 253s Selecting previously unselected package r-bioc-biocparallel. 253s Preparing to unpack .../190-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 253s Unpacking r-bioc-biocparallel (1.36.0-1) ... 253s Selecting previously unselected package r-cran-base64enc. 253s Preparing to unpack .../191-r-cran-base64enc_0.1-3-3_s390x.deb ... 253s Unpacking r-cran-base64enc (0.1-3-3) ... 253s Selecting previously unselected package r-cran-digest. 253s Preparing to unpack .../192-r-cran-digest_0.6.34-1_s390x.deb ... 253s Unpacking r-cran-digest (0.6.34-1) ... 253s Selecting previously unselected package r-cran-ellipsis. 253s Preparing to unpack .../193-r-cran-ellipsis_0.3.2-2_s390x.deb ... 253s Unpacking r-cran-ellipsis (0.3.2-2) ... 253s Selecting previously unselected package r-cran-htmltools. 253s Preparing to unpack .../194-r-cran-htmltools_0.5.7-1_s390x.deb ... 253s Unpacking r-cran-htmltools (0.5.7-1) ... 253s Selecting previously unselected package r-cran-evaluate. 253s Preparing to unpack .../195-r-cran-evaluate_0.23-1_all.deb ... 253s Unpacking r-cran-evaluate (0.23-1) ... 253s Selecting previously unselected package r-cran-xfun. 253s Preparing to unpack .../196-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 253s Unpacking r-cran-xfun (0.41+dfsg-1) ... 253s Selecting previously unselected package r-cran-highr. 253s Preparing to unpack .../197-r-cran-highr_0.10+dfsg-1_all.deb ... 253s Unpacking r-cran-highr (0.10+dfsg-1) ... 253s Selecting previously unselected package r-cran-yaml. 253s Preparing to unpack .../198-r-cran-yaml_2.3.8-1_s390x.deb ... 253s Unpacking r-cran-yaml (2.3.8-1) ... 253s Selecting previously unselected package libjs-mathjax. 253s Preparing to unpack .../199-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 253s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 254s Selecting previously unselected package r-cran-knitr. 254s Preparing to unpack .../200-r-cran-knitr_1.45+dfsg-1_all.deb ... 254s Unpacking r-cran-knitr (1.45+dfsg-1) ... 254s Selecting previously unselected package r-cran-jquerylib. 254s Preparing to unpack .../201-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 254s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 254s Selecting previously unselected package r-cran-fs. 254s Preparing to unpack .../202-r-cran-fs_1.6.3+dfsg-1build2_s390x.deb ... 254s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ... 254s Selecting previously unselected package r-cran-rappdirs. 254s Preparing to unpack .../203-r-cran-rappdirs_0.3.3-1_s390x.deb ... 254s Unpacking r-cran-rappdirs (0.3.3-1) ... 254s Selecting previously unselected package r-cran-sass. 254s Preparing to unpack .../204-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 254s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 254s Selecting previously unselected package r-cran-bslib. 254s Preparing to unpack .../205-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 254s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 255s Selecting previously unselected package r-cran-fontawesome. 255s Preparing to unpack .../206-r-cran-fontawesome_0.5.2-1_all.deb ... 255s Unpacking r-cran-fontawesome (0.5.2-1) ... 255s Selecting previously unselected package r-cran-tinytex. 255s Preparing to unpack .../207-r-cran-tinytex_0.49-1_all.deb ... 255s Unpacking r-cran-tinytex (0.49-1) ... 255s Selecting previously unselected package libjs-modernizr. 255s Preparing to unpack .../208-libjs-modernizr_2.6.2+ds1-5_all.deb ... 255s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 255s Selecting previously unselected package r-cran-pkgkitten. 255s Preparing to unpack .../209-r-cran-pkgkitten_0.2.3-1_all.deb ... 255s Unpacking r-cran-pkgkitten (0.2.3-1) ... 255s Selecting previously unselected package r-cran-rcpp. 255s Preparing to unpack .../210-r-cran-rcpp_1.0.12-1_s390x.deb ... 255s Unpacking r-cran-rcpp (1.0.12-1) ... 255s Selecting previously unselected package r-cran-later. 255s Preparing to unpack .../211-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 255s Unpacking r-cran-later (1.3.2+dfsg-1) ... 255s Selecting previously unselected package r-cran-promises. 255s Preparing to unpack .../212-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 255s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 255s Selecting previously unselected package r-cran-httpuv. 255s Preparing to unpack .../213-r-cran-httpuv_1.6.14+dfsg-1build2_s390x.deb ... 255s Unpacking r-cran-httpuv (1.6.14+dfsg-1build2) ... 255s Selecting previously unselected package r-cran-xtable. 255s Preparing to unpack .../214-r-cran-xtable_1%3a1.8-4-2_all.deb ... 255s Unpacking r-cran-xtable (1:1.8-4-2) ... 255s Selecting previously unselected package r-cran-sourcetools. 255s Preparing to unpack .../215-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 255s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 255s Selecting previously unselected package r-cran-commonmark. 255s Preparing to unpack .../216-r-cran-commonmark_1.9.1-1_s390x.deb ... 255s Unpacking r-cran-commonmark (1.9.1-1) ... 255s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 255s Preparing to unpack .../217-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 255s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 255s Selecting previously unselected package r-cran-shiny. 255s Preparing to unpack .../218-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 255s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 255s Selecting previously unselected package r-cran-rmarkdown. 255s Preparing to unpack .../219-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 255s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 255s Selecting previously unselected package r-cran-bookdown. 255s Preparing to unpack .../220-r-cran-bookdown_0.37+dfsg-1_all.deb ... 255s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 256s Selecting previously unselected package r-cran-biocmanager. 256s Preparing to unpack .../221-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 256s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 256s Selecting previously unselected package tex-common. 256s Preparing to unpack .../222-tex-common_6.18_all.deb ... 256s Unpacking tex-common (6.18) ... 256s Selecting previously unselected package t1utils. 256s Preparing to unpack .../223-t1utils_1.41-4build2_s390x.deb ... 256s Unpacking t1utils (1.41-4build2) ... 256s Selecting previously unselected package texlive-binaries. 256s Preparing to unpack .../224-texlive-binaries_2023.20230311.66589-9build3_s390x.deb ... 256s Unpacking texlive-binaries (2023.20230311.66589-9build3) ... 256s Selecting previously unselected package texlive-base. 256s Preparing to unpack .../225-texlive-base_2023.20240207-1_all.deb ... 256s Unpacking texlive-base (2023.20240207-1) ... 259s Selecting previously unselected package texlive-latex-base. 259s Preparing to unpack .../226-texlive-latex-base_2023.20240207-1_all.deb ... 259s Unpacking texlive-latex-base (2023.20240207-1) ... 259s Selecting previously unselected package texlive-bibtex-extra. 259s Preparing to unpack .../227-texlive-bibtex-extra_2023.20240207-1_all.deb ... 259s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 268s Selecting previously unselected package r-bioc-biocstyle. 268s Preparing to unpack .../228-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 268s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 268s Selecting previously unselected package r-cran-xml. 268s Preparing to unpack .../229-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 268s Unpacking r-cran-xml (3.99-0.16.1-1) ... 268s Selecting previously unselected package r-cran-hms. 268s Preparing to unpack .../230-r-cran-hms_1.1.3-1_all.deb ... 268s Unpacking r-cran-hms (1.1.3-1) ... 268s Selecting previously unselected package r-cran-prettyunits. 268s Preparing to unpack .../231-r-cran-prettyunits_1.2.0-1_all.deb ... 268s Unpacking r-cran-prettyunits (1.2.0-1) ... 268s Selecting previously unselected package r-cran-progress. 268s Preparing to unpack .../232-r-cran-progress_1.2.3-1_all.deb ... 268s Unpacking r-cran-progress (1.2.3-1) ... 268s Selecting previously unselected package r-cran-xml2. 268s Preparing to unpack .../233-r-cran-xml2_1.3.6-1_s390x.deb ... 268s Unpacking r-cran-xml2 (1.3.6-1) ... 268s Selecting previously unselected package r-bioc-biomart. 268s Preparing to unpack .../234-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 268s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 268s Selecting previously unselected package r-cran-lattice. 268s Preparing to unpack .../235-r-cran-lattice_0.22-5-1_s390x.deb ... 268s Unpacking r-cran-lattice (0.22-5-1) ... 268s Selecting previously unselected package r-cran-matrix. 268s Preparing to unpack .../236-r-cran-matrix_1.6-5-1_s390x.deb ... 268s Unpacking r-cran-matrix (1.6-5-1) ... 268s Selecting previously unselected package r-cran-matrixstats. 268s Preparing to unpack .../237-r-cran-matrixstats_1.2.0-1_s390x.deb ... 268s Unpacking r-cran-matrixstats (1.2.0-1) ... 268s Selecting previously unselected package r-bioc-matrixgenerics. 268s Preparing to unpack .../238-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 268s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 268s Selecting previously unselected package r-cran-abind. 268s Preparing to unpack .../239-r-cran-abind_1.4-5-2_all.deb ... 268s Unpacking r-cran-abind (1.4-5-2) ... 268s Selecting previously unselected package r-bioc-s4arrays. 268s Preparing to unpack .../240-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 268s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 269s Selecting previously unselected package r-bioc-sparsearray. 269s Preparing to unpack .../241-r-bioc-sparsearray_1.2.4+dfsg-1_s390x.deb ... 269s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 269s Selecting previously unselected package r-bioc-delayedarray. 269s Preparing to unpack .../242-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ... 269s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 269s Selecting previously unselected package r-bioc-genomicranges. 269s Preparing to unpack .../243-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 269s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 269s Selecting previously unselected package r-bioc-summarizedexperiment. 269s Preparing to unpack .../244-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 269s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 269s Selecting previously unselected package r-bioc-rhtslib. 269s Preparing to unpack .../245-r-bioc-rhtslib_2.4.1+dfsg-3build2_s390x.deb ... 269s Unpacking r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 269s Selecting previously unselected package r-bioc-rsamtools. 269s Preparing to unpack .../246-r-bioc-rsamtools_2.18.0+dfsg-1build1_s390x.deb ... 269s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 269s Selecting previously unselected package r-bioc-genomicalignments. 269s Preparing to unpack .../247-r-bioc-genomicalignments_1.38.2-1_s390x.deb ... 269s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 269s Selecting previously unselected package r-cran-rjson. 269s Preparing to unpack .../248-r-cran-rjson_0.2.21-1_s390x.deb ... 269s Unpacking r-cran-rjson (0.2.21-1) ... 269s Selecting previously unselected package r-cran-restfulr. 269s Preparing to unpack .../249-r-cran-restfulr_0.0.15-1_s390x.deb ... 269s Unpacking r-cran-restfulr (0.0.15-1) ... 269s Selecting previously unselected package r-bioc-rtracklayer. 269s Preparing to unpack .../250-r-bioc-rtracklayer_1.62.0-1_s390x.deb ... 269s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 269s Selecting previously unselected package r-bioc-genomicfeatures. 269s Preparing to unpack .../251-r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb ... 269s Unpacking r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 269s Selecting previously unselected package r-cran-hwriter. 269s Preparing to unpack .../252-r-cran-hwriter_1.3.2.1-1_all.deb ... 269s Unpacking r-cran-hwriter (1.3.2.1-1) ... 269s Selecting previously unselected package r-cran-jpeg. 269s Preparing to unpack .../253-r-cran-jpeg_0.1-10-1_s390x.deb ... 269s Unpacking r-cran-jpeg (0.1-10-1) ... 270s Selecting previously unselected package r-cran-rcolorbrewer. 270s Preparing to unpack .../254-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 270s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 270s Selecting previously unselected package r-cran-deldir. 270s Preparing to unpack .../255-r-cran-deldir_2.0-4-1build1_s390x.deb ... 270s Unpacking r-cran-deldir (2.0-4-1build1) ... 270s Selecting previously unselected package r-cran-rcppeigen. 270s Preparing to unpack .../256-r-cran-rcppeigen_0.3.4.0.0-1build1_s390x.deb ... 270s Unpacking r-cran-rcppeigen (0.3.4.0.0-1build1) ... 270s Selecting previously unselected package r-cran-interp. 270s Preparing to unpack .../257-r-cran-interp_1.1-6-1_s390x.deb ... 270s Unpacking r-cran-interp (1.1-6-1) ... 270s Selecting previously unselected package r-cran-mass. 270s Preparing to unpack .../258-r-cran-mass_7.3-60.0.1-1_s390x.deb ... 270s Unpacking r-cran-mass (7.3-60.0.1-1) ... 270s Selecting previously unselected package r-cran-latticeextra. 270s Preparing to unpack .../259-r-cran-latticeextra_0.6-30-1_all.deb ... 270s Unpacking r-cran-latticeextra (0.6-30-1) ... 270s Selecting previously unselected package r-bioc-shortread. 270s Preparing to unpack .../260-r-bioc-shortread_1.60.0-2_s390x.deb ... 270s Unpacking r-bioc-shortread (1.60.0-2) ... 270s Selecting previously unselected package r-cran-runit. 270s Preparing to unpack .../261-r-cran-runit_0.4.33-1_all.deb ... 270s Unpacking r-cran-runit (0.4.33-1) ... 270s Selecting previously unselected package autopkgtest-satdep. 270s Preparing to unpack .../262-1-autopkgtest-satdep.deb ... 270s Unpacking autopkgtest-satdep (0) ... 270s Setting up libjs-json (0~20221030+~1.0.8-1) ... 270s Setting up javascript-common (11+nmu1) ... 270s Setting up libgraphite2-3:s390x (1.3.14-2) ... 270s Setting up libpixman-1-0:s390x (0.42.2-1) ... 270s Setting up libpaper1:s390x (1.1.29) ... 270s 270s Creating config file /etc/papersize with new version 270s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 272s Regenerating fonts cache... done. 272s Setting up libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 272s Setting up libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 272s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 272s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 272s Setting up libxi6:s390x (2:1.8.1-1) ... 272s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 272s Setting up libdatrie1:s390x (0.2.13-3) ... 272s Setting up libjs-popper.js (1.16.1+ds-6) ... 272s Setting up libxcb-render0:s390x (1.15-1) ... 272s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 272s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 272s Setting up libjs-lunr 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update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 273s Setting up libpkgconf3:s390x (1.8.1-2) ... 273s Setting up gcc-13-base:s390x (13.2.0-23ubuntu3) ... 273s Setting up libzzip-0-13t64:s390x (0.13.72+dfsg.1-1.2build1) ... 273s Setting up libteckit0:s390x (2.5.12+ds1-1) ... 273s Setting up t1utils (1.41-4build2) ... 273s Setting up libtexlua53-5:s390x (2023.20230311.66589-9build3) ... 273s Setting up libjs-d3 (3.5.17-4) ... 273s Setting up libmpc3:s390x (1.3.1-1) ... 273s Setting up libatomic1:s390x (14-20240330-1ubuntu2) ... 273s Setting up libtcl8.6:s390x (8.6.14+dfsg-1build1) ... 273s Setting up icu-devtools (74.2-1ubuntu1) ... 273s Setting up pkgconf-bin (1.8.1-2) ... 273s Setting up libkpathsea6:s390x (2023.20230311.66589-9build3) ... 273s Setting up libgfortran5:s390x (14-20240330-1ubuntu2) ... 273s Setting up liblzma-dev:s390x (5.6.1+really5.4.5-1) ... 273s Setting up libubsan1:s390x (14-20240330-1ubuntu2) ... 273s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ... 273s Setting up libpcre2-posix3:s390x (10.42-4ubuntu1) ... 273s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 273s Setting up libasan8:s390x (14-20240330-1ubuntu2) ... 273s Setting up fonts-lmodern (2.005-1) ... 273s Setting up liblua5.4-0:s390x (5.4.6-3build2) ... 273s Setting up libharfbuzz0b:s390x (8.3.0-2build2) ... 273s Setting up libthai-data (0.1.29-2) ... 273s Setting up node-bootstrap-sass (3.4.3-2) ... 273s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 273s Setting up libxss1:s390x (1:1.2.3-1build2) ... 273s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 273s Setting up pandoc-data (3.1.3-1) ... 273s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 273s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 273s Setting up libisl23:s390x (0.26-3) ... 273s Setting up node-normalize.css (8.0.1-5) ... 273s Setting up libicu-dev:s390x (74.2-1ubuntu1) ... 273s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 273s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 273s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 273s Setting up libcc1-0:s390x (14-20240330-1ubuntu2) ... 273s Setting up libblas-dev:s390x (3.12.0-3) ... 273s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 273s Setting up dctrl-tools (2.24-3build2) ... 273s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 273s Setting up libitm1:s390x (14-20240330-1ubuntu2) ... 273s Setting up libsynctex2:s390x (2023.20230311.66589-9build3) ... 273s Setting up libbz2-dev:s390x (1.0.8-5ubuntu1) ... 273s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 273s Setting up libpotrace0:s390x (1.16-2) ... 273s Setting up libice6:s390x (2:1.0.10-1build2) ... 273s Setting up liblapack3:s390x (3.12.0-3) ... 274s update-alternatives: using 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(3.99-0.16.1-1) ... 274s Setting up g++ (4:13.2.0-7ubuntu1) ... 274s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 274s Setting up texlive-binaries (2023.20230311.66589-9build3) ... 274s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 274s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 274s Setting up build-essential (12.10ubuntu1) ... 274s Setting up r-cran-commonmark (1.9.1-1) ... 274s Setting up r-cran-r6 (2.5.1-1) ... 274s Setting up r-cran-pkgkitten (0.2.3-1) ... 274s Setting up r-cran-jpeg (0.1-10-1) ... 274s Setting up texlive-base (2023.20240207-1) ... 275s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 275s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 276s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 276s tl-paper: 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/usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 276s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 276s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 276s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 276s Setting up r-cran-bitops (1.0-7-1) ... 276s Setting up r-cran-bit64 (4.0.5-1) ... 276s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 276s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 276s Setting up r-cran-deldir (2.0-4-1build1) ... 276s Setting up r-cran-askpass (1.2.0-1) ... 276s Setting up r-cran-fastmap (1.1.1-1) ... 276s Setting up r-cran-png (0.1-8-1build2) ... 276s Setting up r-bioc-biobase (2.62.0-1) ... 276s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 276s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 276s Setting up r-cran-utf8 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up r-cran-ellipsis (0.3.2-2) ... 276s Setting up r-cran-openssl (2.1.1+dfsg-2build2) ... 276s Setting up r-base-dev (4.3.3-2build2) ... 276s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 276s Setting up r-cran-stringr (1.5.1-1) ... 276s Setting up r-bioc-biocparallel (1.36.0-1) ... 276s Setting up r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 276s Setting up r-cran-xml2 (1.3.6-1) ... 276s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 276s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 276s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 276s Setting up texlive-bibtex-extra (2023.20240207-1) ... 276s Setting up r-cran-interp (1.1-6-1) ... 276s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 276s Setting up r-cran-httr (1.4.7+dfsg-1) ... 276s Setting up r-cran-hms (1.1.3-1) ... 276s Setting up r-cran-memoise (2.0.1-1) ... 276s Setting up r-cran-promises (1.2.1+dfsg-1) ... 276s Setting up r-cran-purrr (1.0.2-1) ... 276s Setting up r-cran-blob (1.2.4-1) ... 276s Setting up r-cran-htmltools (0.5.7-1) ... 276s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 276s Setting up r-bioc-xvector (0.42.0-1) ... 276s Setting up r-cran-sass (0.4.8+dfsg-1) ... 276s Setting up r-cran-dplyr (1.1.4-1) ... 276s Setting up r-cran-rsqlite (2.3.4-1) ... 276s Setting up r-cran-progress (1.2.3-1) ... 276s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 276s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 276s Setting up r-cran-httpuv (1.6.14+dfsg-1build2) ... 276s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 276s Setting up r-cran-fontawesome (0.5.2-1) ... 276s Setting up r-cran-latticeextra (0.6-30-1) ... 276s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 276s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 276s Setting up r-cran-tidyr (1.3.1-1) ... 276s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 276s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 276s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 276s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 276s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 276s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 276s Setting up r-bioc-annotationdbi (1.64.1-1) ... 276s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 276s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 276s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 276s Setting up r-bioc-genomicalignments (1.38.2-1) ... 276s Setting up r-cran-bookdown (0.37+dfsg-1) ... 276s Setting up r-bioc-rtracklayer (1.62.0-1) ... 276s Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 276s Setting up r-bioc-shortread (1.60.0-2) ... 276s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 276s Setting up autopkgtest-satdep (0) ... 276s Processing triggers for man-db (2.12.0-4build1) ... 276s Processing triggers for install-info (7.1-3build2) ... 277s Processing triggers for libc-bin (2.39-0ubuntu8) ... 277s Processing triggers for tex-common (6.18) ... 277s Running updmap-sys. This may take some time... done. 277s Running mktexlsr /var/lib/texmf ... done. 277s Building format(s) --all. 333s This may take some time... done. 343s (Reading database ... 126652 files and directories currently installed.) 343s Removing autopkgtest-satdep (0) ... 344s autopkgtest [22:14:34]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 344s autopkgtest [22:14:34]: test pkg-r-autopkgtest: [----------------------- 344s Test: Try to load the R library Rsamtools 344s 344s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 344s Copyright (C) 2024 The R Foundation for Statistical Computing 344s Platform: s390x-ibm-linux-gnu (64-bit) 344s 344s R is free software and comes with ABSOLUTELY NO WARRANTY. 344s You are welcome to redistribute it under certain conditions. 344s Type 'license()' or 'licence()' for distribution details. 344s 344s R is a collaborative project with many contributors. 344s Type 'contributors()' for more information and 344s 'citation()' on how to cite R or R packages in publications. 344s 344s Type 'demo()' for some demos, 'help()' for on-line help, or 344s 'help.start()' for an HTML browser interface to help. 344s Type 'q()' to quit R. 344s 344s > library('Rsamtools') 344s Loading required package: GenomeInfoDb 344s Loading required package: BiocGenerics 344s 344s Attaching package: ‘BiocGenerics’ 344s 344s The following objects are masked from ‘package:stats’: 344s 344s IQR, mad, sd, var, xtabs 344s 344s The following objects are masked from ‘package:base’: 344s 344s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 344s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 344s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 344s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 344s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 344s table, tapply, union, unique, unsplit, which.max, which.min 344s 344s Loading required package: S4Vectors 344s Loading required package: stats4 345s 345s Attaching package: ‘S4Vectors’ 345s 345s The following object is masked from ‘package:utils’: 345s 345s findMatches 345s 345s The following objects are masked from ‘package:base’: 345s 345s expand.grid, I, unname 345s 345s Loading required package: IRanges 346s Loading required package: GenomicRanges 347s Loading required package: Biostrings 347s Loading required package: XVector 348s 348s Attaching package: ‘Biostrings’ 348s 348s The following object is masked from ‘package:base’: 348s 348s strsplit 348s 348s > 348s > 348s Other tests are currently unsupported! 348s They will be progressively added. 348s autopkgtest [22:14:38]: test pkg-r-autopkgtest: -----------------------] 349s autopkgtest [22:14:39]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 349s pkg-r-autopkgtest PASS 350s autopkgtest [22:14:39]: @@@@@@@@@@@@@@@@@@@@ summary 350s pkg-r-autopkgtest PASS 366s Creating nova instance adt-noble-s390x-r-bioc-rsamtools-20240408-220850-juju-7f2275-prod-proposed-migration-environment-3-a78a6115-70b0-45f3-8d62-b84590c8abb9 from image adt/ubuntu-noble-s390x-server-20240408.img (UUID ba451603-1cf6-4234-8732-73f1ede19770)...