0s autopkgtest [18:58:57]: starting date and time: 2024-03-16 18:58:57+0000 0s autopkgtest [18:58:57]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:58:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.62fpdcm1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-variantannotation,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-purecn --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-4.secgroup --name adt-noble-s390x-r-bioc-purecn-20240316-185857-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 81s autopkgtest [19:00:18]: testbed dpkg architecture: s390x 81s autopkgtest [19:00:18]: testbed apt version: 2.7.12 81s autopkgtest [19:00:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 82s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 82s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 82s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 82s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 82s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 82s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB] 82s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 82s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 82s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 82s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3752 kB] 82s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 82s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB] 82s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 85s Fetched 8760 kB in 2s (3953 kB/s) 85s Reading package lists... 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 88s Calculating upgrade... 88s The following packages will be REMOVED: 88s libssl3 88s The following NEW packages will be installed: 88s libssl3t64 88s The following packages have been kept back: 88s curl 88s The following packages will be upgraded: 88s openssl ubuntu-minimal ubuntu-standard 88s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 88s Need to get 2680 kB of archives. 88s After this operation, 23.6 kB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 88s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 88s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB] 88s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB] 89s Fetched 2680 kB in 1s (3847 kB/s) 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 89s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 89s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 89s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 89s wget depends on libssl3 (>= 3.0.0). 89s tnftp depends on libssl3 (>= 3.0.0). 89s tcpdump depends on libssl3 (>= 3.0.0). 89s systemd-resolved depends on libssl3 (>= 3.0.0). 89s systemd depends on libssl3 (>= 3.0.0). 89s sudo depends on libssl3 (>= 3.0.0). 89s s390-tools depends on libssl3 (>= 3.0.0). 89s rsync depends on libssl3 (>= 3.0.0). 89s python3-cryptography depends on libssl3 (>= 3.0.0). 89s openssh-server depends on libssl3 (>= 3.0.10). 89s openssh-client depends on libssl3 (>= 3.0.10). 89s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 89s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 89s libssh-4:s390x depends on libssl3 (>= 3.0.0). 89s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 89s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 89s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 89s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 89s libnvme1 depends on libssl3 (>= 3.0.0). 89s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 89s libkmod2:s390x depends on libssl3 (>= 3.0.0). 89s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 89s libcurl4:s390x depends on libssl3 (>= 3.0.0). 89s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 89s kmod depends on libssl3 (>= 3.0.0). 89s dhcpcd-base depends on libssl3 (>= 3.0.0). 89s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 89s 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 89s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 89s Selecting previously unselected package libssl3t64:s390x. 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 89s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 89s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 89s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ... 89s Unpacking ubuntu-minimal (1.536) over (1.535) ... 89s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ... 89s Unpacking ubuntu-standard (1.536) over (1.535) ... 89s Setting up ubuntu-minimal (1.536) ... 89s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 89s Setting up ubuntu-standard (1.536) ... 89s Setting up openssl (3.0.13-0ubuntu1) ... 89s Processing triggers for man-db (2.12.0-3) ... 89s Processing triggers for libc-bin (2.39-0ubuntu2) ... 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 91s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 91s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 91s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 91s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 92s Reading package lists... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s Calculating upgrade... 92s The following packages have been kept back: 92s curl 92s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 92s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 95s autopkgtest [19:00:32]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 95s autopkgtest [19:00:32]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-purecn 97s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (dsc) [2494 B] 97s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (tar) [5486 kB] 97s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (diff) [6412 B] 97s gpgv: Signature made Fri Dec 1 10:51:26 2023 UTC 97s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 97s gpgv: issuer "tillea@rki.de" 97s gpgv: Can't check signature: No public key 97s dpkg-source: warning: cannot verify inline signature for ./r-bioc-purecn_2.8.1+dfsg-1.dsc: no acceptable signature found 98s autopkgtest [19:00:35]: testing package r-bioc-purecn version 2.8.1+dfsg-1 98s autopkgtest [19:00:35]: build not needed 100s autopkgtest [19:00:37]: test pkg-r-autopkgtest: preparing testbed 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s Starting pkgProblemResolver with broken count: 0 101s Starting 2 pkgProblemResolver with broken count: 0 101s Done 101s The following additional packages will be installed: 101s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl 101s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 101s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 101s g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 101s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 101s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu hdf5-helpers 101s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 101s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 101s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 101s libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 101s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 101s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 101s libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 101s libhdf5-hl-fortran-100 libice6 libicu-dev libio-string-perl libisl23 libitm1 101s libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 101s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 101s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 101s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 101s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 101s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 101s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 101s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 101s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 101s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 101s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libsnappy1v5 libssl-dev 101s libstdc++-13-dev libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 101s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 101s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 101s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 101s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 101s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 101s r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase r-bioc-biocfilecache 101s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 101s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 101s r-bioc-dnacopy r-bioc-genomeinfodb r-bioc-genomeinfodbdata 101s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 101s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-org.hs.eg.db 101s r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 101s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 101s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 101s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 101s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 101s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 101s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 101s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 101s r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-desc 101s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 101s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 101s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 101s r-cran-future r-cran-generics r-cran-getopt r-cran-ggplot2 r-cran-globals 101s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hms 101s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib 101s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 101s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 101s r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix 101s r-cran-matrixstats r-cran-mclust r-cran-memoise r-cran-mgcv r-cran-mime 101s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-optparse r-cran-parallelly 101s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 101s r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits 101s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-pscbs 101s r-cran-purrr r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 101s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 101s r-cran-rematch2 r-cran-restfulr r-cran-rex r-cran-rjson r-cran-rlang 101s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales 101s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 101s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 101s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite 101s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 101s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 101s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 101s xdg-utils zip zlib1g-dev 101s Suggested packages: 101s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 101s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 101s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 101s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 101s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 101s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 101s libboost-context1.83-dev libboost-contract1.83-dev 101s libboost-coroutine1.83-dev libboost-date-time1.83-dev 101s libboost-exception1.83-dev libboost-fiber1.83-dev 101s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 101s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 101s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 101s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 101s libboost-numpy1.83-dev libboost-program-options1.83-dev 101s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 101s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 101s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 101s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 101s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 101s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 101s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 101s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 101s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 101s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 101s librsvg2-bin groff ghc php python ruby libjs-katex 101s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 101s r-base-html texlive-plain-generic texlive-fonts-recommended 101s texlive-fonts-extra texlive-extra-utils texinfo r-bioc-go.db r-cran-runit 101s r-bioc-graph r-cran-princurve r-bioc-all r-bioc-affy r-bioc-deseq2 101s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 101s r-bioc-shortread r-cran-batchtools r-cran-mockery r-cran-webmockr 101s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 101s r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter r-bioc-gviz 101s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-cran-bench 101s r-cran-tinytest r-bioc-limma r-bioc-snpstats r-cran-roxygen2 r-cran-ff 101s r-cran-spelling r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd 101s r-cran-shinyjs r-cran-jpeg r-cran-viridis r-cran-rstudioapi r-cran-rmysql 101s r-cran-lubridate r-cran-magick r-cran-sf r-cran-geometry r-cran-formattable 101s r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units 101s r-cran-vdiffr r-cran-inline r-cran-hmisc r-cran-rvest r-cran-rmpi 101s r-cran-rlecuyer r-cran-here r-cran-plm r-cran-zoo debhelper ghostscript gv 101s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 101s texlive-latex-base-doc wp2latex 101s Recommended packages: 101s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 101s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 101s r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect 101s r-cran-testit r-cran-tufte r-cran-webshot r-cran-thematic r-cran-cliapp 101s r-cran-mockery r-cran-whoami r-cran-dt r-cran-bench r-cran-decor 101s r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-xts r-cran-nanotime 101s r-cran-zoo r-cran-rpostgresql r-cran-gh r-cran-broom r-cran-rmysql 101s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-rhpcblasctl r-cran-r.rsp 101s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 101s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 101s r-cran-svglite r-cran-vdiffr r-cran-cairo r-cran-jpeg r-cran-readr 101s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 101s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 101s r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr r-cran-webfakes 101s r-cran-pingr r-cran-foreign r-cran-nnet r-cran-runit r-cran-usethis 101s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-rvest r-cran-dichromat 101s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 101s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 101s x11-xserver-utils 102s The following packages will be REMOVED: 102s libcurl4 libpsl5 102s The following NEW packages will be installed: 102s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 102s cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config 102s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 102s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 102s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 102s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 102s gfortran-s390x-linux-gnu hdf5-helpers icu-devtools javascript-common 102s libaec-dev libaec0 libasan8 libatomic1 libbibtex-parser-perl libblas-dev 102s libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin 102s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 102s libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev 102s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 102s libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 102s libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libice6 libicu-dev 102s libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 102s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 102s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 102s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 102s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 102s libjs-popper.js libjs-prettify libjs-sifter.js 102s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 102s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 102s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 102s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 102s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 102s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libsnappy1v5 libssl-dev 102s libstdc++-13-dev libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 102s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 102s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 102s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 102s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 102s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 102s r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase r-bioc-biocfilecache 102s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 102s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 102s r-bioc-dnacopy r-bioc-genomeinfodb r-bioc-genomeinfodbdata 102s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 102s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-org.hs.eg.db 102s r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 102s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 102s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 102s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 102s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 102s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 102s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 102s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 102s r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-desc 102s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 102s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 102s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 102s r-cran-future r-cran-generics r-cran-getopt r-cran-ggplot2 r-cran-globals 102s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hms 102s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib 102s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 102s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 102s r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix 102s r-cran-matrixstats r-cran-mclust r-cran-memoise r-cran-mgcv r-cran-mime 102s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-optparse r-cran-parallelly 102s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 102s r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits 102s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-pscbs 102s r-cran-purrr r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 102s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 102s r-cran-rematch2 r-cran-restfulr r-cran-rex r-cran-rjson r-cran-rlang 102s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales 102s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 102s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 102s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite 102s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 102s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 102s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 102s xdg-utils zip zlib1g-dev 102s The following packages will be upgraded: 102s curl 102s 1 upgraded, 342 newly installed, 2 to remove and 0 not upgraded. 102s Need to get 561 MB/561 MB of archives. 102s After this operation, 1896 MB of additional disk space will be used. 102s Get:1 /tmp/autopkgtest.Or2j41/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [816 B] 102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB] 102s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB] 102s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB] 102s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 102s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 102s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 102s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 102s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 102s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 102s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 102s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 102s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 102s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 103s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 103s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 103s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 103s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 103s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 103s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 103s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 103s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 103s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 103s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 103s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 103s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 103s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 103s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 103s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 103s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 104s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 104s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 104s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 104s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 104s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 104s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 104s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 104s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 104s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 104s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 104s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 104s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 104s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 104s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 104s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 104s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 104s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 104s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 104s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 104s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 104s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 104s Get:52 http://ftpmaster.internal/ubuntu noble/universe s390x hdf5-helpers s390x 1.10.10+repack-3ubuntu1 [15.6 kB] 104s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 104s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 104s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x libaec0 s390x 1.1.2-1 [25.7 kB] 104s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 104s Get:57 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 104s Get:58 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 104s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 104s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 104s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libsnappy1v5 s390x 1.1.10-1 [30.0 kB] 104s Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x libblosc1 s390x 1.21.5+ds-1 [27.3 kB] 104s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 105s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 105s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 105s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 105s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 105s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 105s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 105s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 105s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4-openssl-dev s390x 8.5.0-2ubuntu7 [473 kB] 105s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 105s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 105s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 105s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 105s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x libsz2 s390x 1.1.2-1 [5346 B] 105s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-103-1 s390x 1.10.10+repack-3ubuntu1 [1425 kB] 105s Get:78 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-cpp-103-1 s390x 1.10.10+repack-3ubuntu1 [121 kB] 105s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-fortran-102 s390x 1.10.10+repack-3ubuntu1 [91.6 kB] 105s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-100 s390x 1.10.10+repack-3ubuntu1 [57.5 kB] 105s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-fortran-100 s390x 1.10.10+repack-3ubuntu1 [31.6 kB] 105s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-cpp-100 s390x 1.10.10+repack-3ubuntu1 [10.8 kB] 105s Get:83 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 105s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 105s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 105s Get:86 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 105s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 105s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 105s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x libaec-dev s390x 1.1.2-1 [23.1 kB] 105s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl-dev s390x 3.0.13-0ubuntu1 [2132 kB] 105s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-dev s390x 1.10.10+repack-3ubuntu1 [2898 kB] 105s Get:92 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 105s Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 105s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 105s Get:95 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 105s Get:96 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 105s Get:97 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 105s Get:98 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 105s Get:99 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 105s Get:100 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 105s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 105s Get:102 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 105s Get:103 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 106s Get:104 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 106s Get:105 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 106s Get:106 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 106s Get:107 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 106s Get:108 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 106s Get:109 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 106s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9 [66.4 kB] 106s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 106s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 106s Get:113 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 106s Get:114 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 106s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 106s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 106s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 106s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 106s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 106s Get:120 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 106s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 106s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 106s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 106s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 106s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 106s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 106s Get:127 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 106s Get:128 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 106s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9 [41.6 kB] 106s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 106s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 106s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 106s Get:133 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9 [65.0 kB] 106s Get:134 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 106s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 106s Get:136 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9 [132 kB] 106s Get:137 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 106s Get:138 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 106s Get:139 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 106s Get:140 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 107s Get:141 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 107s Get:142 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 107s Get:143 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 107s Get:144 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3 [49.3 kB] 107s Get:145 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 107s Get:146 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1 [186 kB] 107s Get:147 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 107s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13 s390x 0.13.72+dfsg.1-1.1 [26.1 kB] 107s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 107s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 107s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 107s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 107s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 108s Get:154 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 108s Get:155 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 108s Get:156 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 108s Get:157 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 108s Get:158 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 108s Get:159 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 108s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 109s Get:161 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 109s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 109s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 109s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 109s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 109s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 110s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 110s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 110s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 110s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 110s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 110s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 110s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 110s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 110s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 110s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 110s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 110s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 110s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 110s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 110s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 110s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 110s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 110s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB] 110s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 110s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 110s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 110s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 110s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB] 110s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 110s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 110s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB] 110s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 110s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 110s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 110s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1 [794 kB] 110s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 111s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 111s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 111s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 111s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 111s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 112s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 112s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r.oo all 1.26.0-1 [955 kB] 112s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r.utils all 2.12.3-1 [1386 kB] 112s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 112s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-aroma.light all 3.32.0-1 [576 kB] 112s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 112s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 112s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 112s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 112s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 112s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 112s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 112s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 112s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 112s Get:217 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 112s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 112s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 112s Get:220 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 113s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 113s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 113s Get:223 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 113s Get:224 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 113s Get:225 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 113s Get:226 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 113s Get:227 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 113s Get:228 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 113s Get:229 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 113s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 113s Get:231 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 113s Get:232 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 113s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 113s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 113s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 113s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 113s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 113s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 113s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 113s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 113s Get:241 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 113s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 113s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 113s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 113s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 113s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 113s Get:247 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 113s Get:248 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 113s Get:249 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 113s Get:250 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 113s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 113s Get:252 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 113s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 114s Get:254 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 114s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 114s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1 [519 kB] 114s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 114s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 114s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 114s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 114s Get:261 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 114s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 114s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 114s Get:264 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 114s Get:265 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 114s Get:266 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 114s Get:267 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9 [9353 kB] 114s Get:268 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 115s Get:269 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 115s Get:270 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 118s Get:271 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 118s Get:272 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 118s Get:273 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 118s Get:274 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 118s Get:275 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 118s Get:276 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 118s Get:277 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 118s Get:278 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 118s Get:279 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-1 [1410 kB] 118s Get:280 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1 [3688 kB] 119s Get:281 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 119s Get:282 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 119s Get:283 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 119s Get:284 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 119s Get:285 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 119s Get:286 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 119s Get:287 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 119s Get:288 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 119s Get:289 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 119s Get:290 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 119s Get:291 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 119s Get:292 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 119s Get:293 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-bsgenome all 1.70.2-1 [6975 kB] 119s Get:294 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-dnacopy s390x 1.76.0-1 [384 kB] 120s Get:295 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 120s Get:296 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 122s Get:297 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-bioc-variantannotation s390x 1.48.1-1build1 [3578 kB] 122s Get:298 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 122s Get:299 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-data.table s390x 1.14.10+dfsg-1 [1880 kB] 123s Get:300 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 123s Get:301 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB] 123s Get:302 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 123s Get:303 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-nlme s390x 3.1.164-1 [2268 kB] 123s Get:304 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 123s Get:305 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-farver s390x 2.1.1-1 [1347 kB] 124s Get:306 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB] 124s Get:307 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-colorspace s390x 2.1-0+dfsg-1 [1540 kB] 124s Get:308 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-munsell all 0.5.0-2build1 [208 kB] 124s Get:309 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB] 124s Get:310 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-scales all 1.3.0-1 [603 kB] 124s Get:311 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 124s Get:312 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gridextra all 2.3-3build1 [1024 kB] 124s Get:313 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vgam s390x 1.1-9-1 [7336 kB] 125s Get:314 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mclust s390x 6.0.1-1 [3936 kB] 125s Get:315 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhdf5lib s390x 1.24.2+dfsg-1 [96.1 kB] 125s Get:316 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhdf5filters s390x 1.14.1+dfsg-3 [124 kB] 125s Get:317 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhdf5 s390x 2.46.1+dfsg-1 [814 kB] 125s Get:318 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-purecn all 2.8.1+dfsg-1 [6042 kB] 125s Get:319 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-brio s390x 1.1.4-1 [37.8 kB] 125s Get:320 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ps s390x 1.7.6-1 [313 kB] 125s Get:321 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-processx s390x 3.8.3-1 [364 kB] 125s Get:322 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-callr all 3.7.3-2 [425 kB] 125s Get:323 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lazyeval s390x 0.2.2-1build1 [143 kB] 125s Get:324 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rex all 1.2.1-1 [129 kB] 125s Get:325 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-covr s390x 3.6.4+dfsg-1 [302 kB] 125s Get:326 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-desc all 1.4.3-1 [359 kB] 125s Get:327 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB] 125s Get:328 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-globals all 0.16.2-1 [117 kB] 125s Get:329 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 125s Get:330 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-parallelly s390x 1.37.1-1 [365 kB] 125s Get:331 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-future all 1.33.1+dfsg-1 [634 kB] 125s Get:332 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-getopt all 1.20.4-1 [38.4 kB] 125s Get:333 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-markdown all 1.12+dfsg-1 [179 kB] 125s Get:334 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-optparse all 1.7.4-1 [81.6 kB] 125s Get:335 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgbuild all 1.4.3-1 [209 kB] 125s Get:336 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rprojroot all 2.0.4-1 [124 kB] 125s Get:337 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgload all 1.3.4-1 [207 kB] 125s Get:338 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB] 125s Get:339 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r.cache all 0.16.0-1 [113 kB] 125s Get:340 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pscbs all 0.66.0-2 [4345 kB] 126s Get:341 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 126s Get:342 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-waldo all 0.5.2-1build1 [120 kB] 126s Get:343 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-testthat s390x 3.2.1-1 [1688 kB] 127s Preconfiguring packages ... 127s Fetched 561 MB in 24s (23.3 MB/s) 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 127s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ... 127s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 127s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested: 127s wget depends on libpsl5 (>= 0.16.0). 127s libcurl4:s390x depends on libpsl5 (>= 0.16.0). 127s libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0). 127s 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 127s Removing libpsl5:s390x (0.21.2-1build1) ... 127s Selecting previously unselected package libpsl5t64:s390x. 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52168 files and directories currently installed.) 127s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ... 127s Unpacking libpsl5t64:s390x (0.21.2-1.1) ... 127s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested: 127s s390-tools depends on libcurl4 (>= 7.16.2). 127s 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52174 files and directories currently installed.) 127s Removing libcurl4:s390x (8.5.0-2ubuntu2) ... 127s Selecting previously unselected package libcurl4t64:s390x. 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52169 files and directories currently installed.) 127s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ... 127s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ... 127s Selecting previously unselected package libc-dev-bin. 127s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 127s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 127s Selecting previously unselected package linux-libc-dev:s390x. 127s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ... 127s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 127s Selecting previously unselected package libcrypt-dev:s390x. 127s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 127s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 127s Selecting previously unselected package libtirpc-dev:s390x. 127s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 127s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 127s Selecting previously unselected package libnsl-dev:s390x. 127s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ... 127s Unpacking libnsl-dev:s390x (1.3.0-3) ... 127s Selecting previously unselected package rpcsvc-proto. 127s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 127s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 127s Selecting previously unselected package libc6-dev:s390x. 127s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ... 127s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 127s Selecting previously unselected package libisl23:s390x. 127s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ... 127s Unpacking libisl23:s390x (0.26-3) ... 127s Selecting previously unselected package libmpc3:s390x. 127s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ... 127s Unpacking libmpc3:s390x (1.3.1-1) ... 127s Selecting previously unselected package cpp-13-s390x-linux-gnu. 127s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 127s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 128s Selecting previously unselected package cpp-13. 128s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 128s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 128s Selecting previously unselected package cpp-s390x-linux-gnu. 128s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 128s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 128s Selecting previously unselected package cpp. 128s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 128s Unpacking cpp (4:13.2.0-7ubuntu1) ... 128s Selecting previously unselected package libcc1-0:s390x. 128s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 128s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libgomp1:s390x. 128s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 128s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libitm1:s390x. 128s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ... 128s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libatomic1:s390x. 128s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 128s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libasan8:s390x. 128s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ... 128s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libubsan1:s390x. 128s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 128s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libgcc-13-dev:s390x. 128s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 128s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 128s Selecting previously unselected package gcc-13-s390x-linux-gnu. 128s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 128s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 128s Selecting previously unselected package gcc-13. 128s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 128s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 128s Selecting previously unselected package gcc-s390x-linux-gnu. 128s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 128s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 128s Selecting previously unselected package gcc. 128s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 128s Unpacking gcc (4:13.2.0-7ubuntu1) ... 128s Selecting previously unselected package libstdc++-13-dev:s390x. 128s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 128s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 128s Selecting previously unselected package g++-13-s390x-linux-gnu. 129s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 129s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 129s Selecting previously unselected package g++-13. 129s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ... 129s Unpacking g++-13 (13.2.0-17ubuntu2) ... 129s Selecting previously unselected package g++-s390x-linux-gnu. 129s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 129s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 129s Selecting previously unselected package g++. 129s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 129s Unpacking g++ (4:13.2.0-7ubuntu1) ... 129s Selecting previously unselected package build-essential. 129s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ... 129s Unpacking build-essential (12.10ubuntu1) ... 129s Selecting previously unselected package dctrl-tools. 129s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ... 129s Unpacking dctrl-tools (2.24-3build2) ... 129s Selecting previously unselected package libfreetype6:s390x. 129s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 129s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 129s Selecting previously unselected package fonts-dejavu-mono. 129s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 129s Unpacking fonts-dejavu-mono (2.37-8) ... 129s Selecting previously unselected package fonts-dejavu-core. 129s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 129s Unpacking fonts-dejavu-core (2.37-8) ... 129s Selecting previously unselected package fontconfig-config. 129s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 129s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 129s Selecting previously unselected package libfontconfig1:s390x. 129s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 129s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 129s Selecting previously unselected package fontconfig. 129s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 129s Unpacking fontconfig (2.15.0-1ubuntu1) ... 129s Selecting previously unselected package fonts-font-awesome. 129s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 129s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 129s Selecting previously unselected package fonts-glyphicons-halflings. 129s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 129s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 129s Selecting previously unselected package fonts-lmodern. 129s Preparing to unpack .../040-fonts-lmodern_2.005-1_all.deb ... 129s Unpacking fonts-lmodern (2.005-1) ... 129s Selecting previously unselected package fonts-mathjax. 129s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 129s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 129s Selecting previously unselected package libgfortran5:s390x. 129s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 129s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 130s Selecting previously unselected package libgfortran-13-dev:s390x. 130s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 130s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 130s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 130s Preparing to unpack .../044-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 130s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 130s Selecting previously unselected package gfortran-13. 130s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 130s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 130s Selecting previously unselected package gfortran-s390x-linux-gnu. 130s Preparing to unpack .../046-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 130s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 130s Selecting previously unselected package gfortran. 130s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 130s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 130s Selecting previously unselected package hdf5-helpers. 130s Preparing to unpack .../048-hdf5-helpers_1.10.10+repack-3ubuntu1_s390x.deb ... 130s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 130s Selecting previously unselected package icu-devtools. 130s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_s390x.deb ... 130s Unpacking icu-devtools (74.2-1ubuntu1) ... 130s Selecting previously unselected package javascript-common. 130s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 130s Unpacking javascript-common (11+nmu1) ... 130s Selecting previously unselected package libaec0:s390x. 130s Preparing to unpack .../051-libaec0_1.1.2-1_s390x.deb ... 130s Unpacking libaec0:s390x (1.1.2-1) ... 130s Selecting previously unselected package libio-string-perl. 130s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 130s Unpacking libio-string-perl (1.08-4) ... 130s Selecting previously unselected package liblatex-tounicode-perl. 130s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 130s Unpacking liblatex-tounicode-perl (0.54-2) ... 130s Selecting previously unselected package libbibtex-parser-perl. 130s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 130s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 130s Selecting previously unselected package libblas3:s390x. 130s Preparing to unpack .../055-libblas3_3.12.0-3_s390x.deb ... 130s Unpacking libblas3:s390x (3.12.0-3) ... 130s Selecting previously unselected package libblas-dev:s390x. 130s Preparing to unpack .../056-libblas-dev_3.12.0-3_s390x.deb ... 130s Unpacking libblas-dev:s390x (3.12.0-3) ... 130s Selecting previously unselected package libsnappy1v5:s390x. 130s Preparing to unpack .../057-libsnappy1v5_1.1.10-1_s390x.deb ... 130s Unpacking libsnappy1v5:s390x (1.1.10-1) ... 130s Selecting previously unselected package libblosc1:s390x. 130s Preparing to unpack .../058-libblosc1_1.21.5+ds-1_s390x.deb ... 130s Unpacking libblosc1:s390x (1.21.5+ds-1) ... 130s Selecting previously unselected package libboost1.83-dev:s390x. 130s Preparing to unpack .../059-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 130s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 132s Selecting previously unselected package libboost-dev:s390x. 132s Preparing to unpack .../060-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 132s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 132s Selecting previously unselected package libbz2-dev:s390x. 132s Preparing to unpack .../061-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 132s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 132s Selecting previously unselected package libpixman-1-0:s390x. 132s Preparing to unpack .../062-libpixman-1-0_0.42.2-1_s390x.deb ... 132s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 132s Selecting previously unselected package libxcb-render0:s390x. 132s Preparing to unpack .../063-libxcb-render0_1.15-1_s390x.deb ... 132s Unpacking libxcb-render0:s390x (1.15-1) ... 132s Selecting previously unselected package libxcb-shm0:s390x. 132s Preparing to unpack .../064-libxcb-shm0_1.15-1_s390x.deb ... 132s Unpacking libxcb-shm0:s390x (1.15-1) ... 132s Selecting previously unselected package libxrender1:s390x. 132s Preparing to unpack .../065-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 132s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 132s Selecting previously unselected package libcairo2:s390x. 132s Preparing to unpack .../066-libcairo2_1.18.0-1_s390x.deb ... 132s Unpacking libcairo2:s390x (1.18.0-1) ... 132s Selecting previously unselected package libcurl4-openssl-dev:s390x. 132s Preparing to unpack .../067-libcurl4-openssl-dev_8.5.0-2ubuntu7_s390x.deb ... 132s Unpacking libcurl4-openssl-dev:s390x (8.5.0-2ubuntu7) ... 132s Selecting previously unselected package libdatrie1:s390x. 132s Preparing to unpack .../068-libdatrie1_0.2.13-3_s390x.deb ... 132s Unpacking libdatrie1:s390x (0.2.13-3) ... 132s Selecting previously unselected package libdeflate0:s390x. 132s Preparing to unpack .../069-libdeflate0_1.19-1_s390x.deb ... 132s Unpacking libdeflate0:s390x (1.19-1) ... 132s Selecting previously unselected package libgraphite2-3:s390x. 132s Preparing to unpack .../070-libgraphite2-3_1.3.14-2_s390x.deb ... 132s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 132s Selecting previously unselected package libharfbuzz0b:s390x. 132s Preparing to unpack .../071-libharfbuzz0b_8.3.0-2_s390x.deb ... 132s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 132s Selecting previously unselected package libsz2:s390x. 132s Preparing to unpack .../072-libsz2_1.1.2-1_s390x.deb ... 132s Unpacking libsz2:s390x (1.1.2-1) ... 132s Selecting previously unselected package libhdf5-103-1:s390x. 132s Preparing to unpack .../073-libhdf5-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 132s Unpacking libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 132s Selecting previously unselected package libhdf5-cpp-103-1:s390x. 132s Preparing to unpack .../074-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 132s Unpacking libhdf5-cpp-103-1:s390x (1.10.10+repack-3ubuntu1) ... 132s Selecting previously unselected package libhdf5-fortran-102:s390x. 132s Preparing to unpack .../075-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_s390x.deb ... 132s Unpacking libhdf5-fortran-102:s390x (1.10.10+repack-3ubuntu1) ... 132s Selecting previously unselected package libhdf5-hl-100:s390x. 132s Preparing to unpack .../076-libhdf5-hl-100_1.10.10+repack-3ubuntu1_s390x.deb ... 132s Unpacking libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 132s Selecting previously unselected package libhdf5-hl-fortran-100:s390x. 132s Preparing to unpack .../077-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_s390x.deb ... 132s Unpacking libhdf5-hl-fortran-100:s390x (1.10.10+repack-3ubuntu1) ... 132s Selecting previously unselected package libhdf5-hl-cpp-100:s390x. 132s Preparing to unpack .../078-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_s390x.deb ... 132s Unpacking libhdf5-hl-cpp-100:s390x (1.10.10+repack-3ubuntu1) ... 133s Selecting previously unselected package zlib1g-dev:s390x. 133s Preparing to unpack .../079-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 133s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 133s Selecting previously unselected package libjpeg-turbo8:s390x. 133s Preparing to unpack .../080-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 133s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 133s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 133s Preparing to unpack .../081-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 133s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 133s Selecting previously unselected package libjpeg8:s390x. 133s Preparing to unpack .../082-libjpeg8_8c-2ubuntu11_s390x.deb ... 133s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 133s Selecting previously unselected package libjpeg8-dev:s390x. 133s Preparing to unpack .../083-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 133s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 133s Selecting previously unselected package libjpeg-dev:s390x. 133s Preparing to unpack .../084-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 133s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 133s Selecting previously unselected package libaec-dev:s390x. 133s Preparing to unpack .../085-libaec-dev_1.1.2-1_s390x.deb ... 133s Unpacking libaec-dev:s390x (1.1.2-1) ... 133s Selecting previously unselected package libssl-dev:s390x. 133s Preparing to unpack .../086-libssl-dev_3.0.13-0ubuntu1_s390x.deb ... 133s Unpacking libssl-dev:s390x (3.0.13-0ubuntu1) ... 134s Selecting previously unselected package libhdf5-dev. 134s Preparing to unpack .../087-libhdf5-dev_1.10.10+repack-3ubuntu1_s390x.deb ... 134s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 134s Selecting previously unselected package x11-common. 134s Preparing to unpack .../088-x11-common_1%3a7.7+23ubuntu2_all.deb ... 134s Unpacking x11-common (1:7.7+23ubuntu2) ... 134s Selecting previously unselected package libice6:s390x. 134s Preparing to unpack .../089-libice6_2%3a1.0.10-1build2_s390x.deb ... 134s Unpacking libice6:s390x (2:1.0.10-1build2) ... 134s Selecting previously unselected package libicu-dev:s390x. 134s Preparing to unpack .../090-libicu-dev_74.2-1ubuntu1_s390x.deb ... 134s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 134s Selecting previously unselected package libjs-bootstrap. 134s Preparing to unpack .../091-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 134s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 134s Selecting previously unselected package libjs-popper.js. 134s Preparing to unpack .../092-libjs-popper.js_1.16.1+ds-6_all.deb ... 134s Unpacking libjs-popper.js (1.16.1+ds-6) ... 134s Selecting previously unselected package libjs-bootstrap4. 134s Preparing to unpack .../093-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 134s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 134s Selecting previously unselected package libjs-d3. 134s Preparing to unpack .../094-libjs-d3_3.5.17-4_all.deb ... 134s Unpacking libjs-d3 (3.5.17-4) ... 134s Selecting previously unselected package libjs-es5-shim. 134s Preparing to unpack .../095-libjs-es5-shim_4.6.7-2_all.deb ... 134s Unpacking libjs-es5-shim (4.6.7-2) ... 134s Selecting previously unselected package libjs-highlight.js. 134s Preparing to unpack .../096-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 134s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 134s Selecting previously unselected package libjs-jquery. 134s Preparing to unpack .../097-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 134s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 134s Selecting previously unselected package libjs-jquery-datatables. 134s Preparing to unpack .../098-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 134s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 134s Selecting previously unselected package libjs-sifter.js. 134s Preparing to unpack .../099-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 134s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 134s Selecting previously unselected package libjs-microplugin.js. 134s Preparing to unpack .../100-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 134s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 134s Selecting previously unselected package libjs-jquery-selectize.js. 134s Preparing to unpack .../101-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 134s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 134s Selecting previously unselected package libjs-jquery-ui. 134s Preparing to unpack .../102-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 134s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 134s Selecting previously unselected package libjs-json. 134s Preparing to unpack .../103-libjs-json_0~20221030+~1.0.8-1_all.deb ... 134s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 134s Selecting previously unselected package libjs-lunr. 134s Preparing to unpack .../104-libjs-lunr_2.3.9~dfsg-2_all.deb ... 134s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 134s Selecting previously unselected package libjs-prettify. 134s Preparing to unpack .../105-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 134s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 134s Selecting previously unselected package libkpathsea6:s390x. 134s Preparing to unpack .../106-libkpathsea6_2023.20230311.66589-9_s390x.deb ... 134s Unpacking libkpathsea6:s390x (2023.20230311.66589-9) ... 134s Selecting previously unselected package liblapack3:s390x. 134s Preparing to unpack .../107-liblapack3_3.12.0-3_s390x.deb ... 134s Unpacking liblapack3:s390x (3.12.0-3) ... 134s Selecting previously unselected package liblapack-dev:s390x. 134s Preparing to unpack .../108-liblapack-dev_3.12.0-3_s390x.deb ... 134s Unpacking liblapack-dev:s390x (3.12.0-3) ... 134s Selecting previously unselected package liblua5.4-0:s390x. 134s Preparing to unpack .../109-liblua5.4-0_5.4.6-3_s390x.deb ... 134s Unpacking liblua5.4-0:s390x (5.4.6-3) ... 134s Selecting previously unselected package libncurses-dev:s390x. 134s Preparing to unpack .../110-libncurses-dev_6.4+20240113-1ubuntu1_s390x.deb ... 134s Unpacking libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 134s Selecting previously unselected package libthai-data. 134s Preparing to unpack .../111-libthai-data_0.1.29-2_all.deb ... 134s Unpacking libthai-data (0.1.29-2) ... 134s Selecting previously unselected package libthai0:s390x. 134s Preparing to unpack .../112-libthai0_0.1.29-2_s390x.deb ... 134s Unpacking libthai0:s390x (0.1.29-2) ... 134s Selecting previously unselected package libpango-1.0-0:s390x. 134s Preparing to unpack .../113-libpango-1.0-0_1.51.0+ds-4_s390x.deb ... 134s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ... 134s Selecting previously unselected package libpangoft2-1.0-0:s390x. 134s Preparing to unpack .../114-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ... 134s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 134s Selecting previously unselected package libpangocairo-1.0-0:s390x. 134s Preparing to unpack .../115-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 134s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 134s Selecting previously unselected package libpaper1:s390x. 134s Preparing to unpack .../116-libpaper1_1.1.29_s390x.deb ... 134s Unpacking libpaper1:s390x (1.1.29) ... 134s Selecting previously unselected package libpaper-utils. 134s Preparing to unpack .../117-libpaper-utils_1.1.29_s390x.deb ... 134s Unpacking libpaper-utils (1.1.29) ... 134s Selecting previously unselected package libpcre2-16-0:s390x. 134s Preparing to unpack .../118-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ... 134s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ... 134s Selecting previously unselected package libpcre2-32-0:s390x. 134s Preparing to unpack .../119-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ... 134s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ... 134s Selecting previously unselected package libpcre2-posix3:s390x. 134s Preparing to unpack .../120-libpcre2-posix3_10.42-4ubuntu1_s390x.deb ... 134s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ... 134s Selecting previously unselected package libpcre2-dev:s390x. 134s Preparing to unpack .../121-libpcre2-dev_10.42-4ubuntu1_s390x.deb ... 134s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ... 134s Selecting previously unselected package libpkgconf3:s390x. 134s Preparing to unpack .../122-libpkgconf3_1.8.1-2_s390x.deb ... 134s Unpacking libpkgconf3:s390x (1.8.1-2) ... 134s Selecting previously unselected package libpng-dev:s390x. 134s Preparing to unpack .../123-libpng-dev_1.6.43-1_s390x.deb ... 134s Unpacking libpng-dev:s390x (1.6.43-1) ... 134s Selecting previously unselected package libpotrace0:s390x. 134s Preparing to unpack .../124-libpotrace0_1.16-2_s390x.deb ... 134s Unpacking libpotrace0:s390x (1.16-2) ... 134s Selecting previously unselected package libptexenc1:s390x. 134s Preparing to unpack .../125-libptexenc1_2023.20230311.66589-9_s390x.deb ... 134s Unpacking libptexenc1:s390x (2023.20230311.66589-9) ... 134s Selecting previously unselected package libreadline-dev:s390x. 134s Preparing to unpack .../126-libreadline-dev_8.2-3_s390x.deb ... 134s Unpacking libreadline-dev:s390x (8.2-3) ... 134s Selecting previously unselected package libsharpyuv0:s390x. 134s Preparing to unpack .../127-libsharpyuv0_1.3.2-0.4_s390x.deb ... 134s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 134s Selecting previously unselected package libsm6:s390x. 134s Preparing to unpack .../128-libsm6_2%3a1.2.3-1build2_s390x.deb ... 134s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 134s Selecting previously unselected package libsynctex2:s390x. 134s Preparing to unpack .../129-libsynctex2_2023.20230311.66589-9_s390x.deb ... 134s Unpacking libsynctex2:s390x (2023.20230311.66589-9) ... 134s Selecting previously unselected package libtcl8.6:s390x. 134s Preparing to unpack .../130-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 134s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 134s Selecting previously unselected package libteckit0:s390x. 134s Preparing to unpack .../131-libteckit0_2.5.12+ds1-1_s390x.deb ... 134s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 135s Selecting previously unselected package libtexlua53-5:s390x. 135s Preparing to unpack .../132-libtexlua53-5_2023.20230311.66589-9_s390x.deb ... 135s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9) ... 135s Selecting previously unselected package libjbig0:s390x. 135s Preparing to unpack .../133-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 135s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 135s Selecting previously unselected package libwebp7:s390x. 135s Preparing to unpack .../134-libwebp7_1.3.2-0.4_s390x.deb ... 135s Unpacking libwebp7:s390x (1.3.2-0.4) ... 135s Selecting previously unselected package libtiff6:s390x. 135s Preparing to unpack .../135-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 135s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 135s Selecting previously unselected package libxft2:s390x. 135s Preparing to unpack .../136-libxft2_2.3.6-1_s390x.deb ... 135s Unpacking libxft2:s390x (2.3.6-1) ... 135s Selecting previously unselected package libxss1:s390x. 135s Preparing to unpack .../137-libxss1_1%3a1.2.3-1build2_s390x.deb ... 135s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 135s Selecting previously unselected package libtk8.6:s390x. 135s Preparing to unpack .../138-libtk8.6_8.6.13-2_s390x.deb ... 135s Unpacking libtk8.6:s390x (8.6.13-2) ... 135s Selecting previously unselected package libxt6:s390x. 135s Preparing to unpack .../139-libxt6_1%3a1.2.1-1.1_s390x.deb ... 135s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 135s Selecting previously unselected package libxmu6:s390x. 135s Preparing to unpack .../140-libxmu6_2%3a1.1.3-3_s390x.deb ... 135s Unpacking libxmu6:s390x (2:1.1.3-3) ... 135s Selecting previously unselected package libxpm4:s390x. 135s Preparing to unpack .../141-libxpm4_1%3a3.5.17-1_s390x.deb ... 135s Unpacking libxpm4:s390x (1:3.5.17-1) ... 135s Selecting previously unselected package libxaw7:s390x. 135s Preparing to unpack .../142-libxaw7_2%3a1.0.14-1_s390x.deb ... 135s Unpacking libxaw7:s390x (2:1.0.14-1) ... 135s Selecting previously unselected package libxi6:s390x. 135s Preparing to unpack .../143-libxi6_2%3a1.8.1-1_s390x.deb ... 135s Unpacking libxi6:s390x (2:1.8.1-1) ... 135s Selecting previously unselected package libzzip-0-13:s390x. 135s Preparing to unpack .../144-libzzip-0-13_0.13.72+dfsg.1-1.1_s390x.deb ... 135s Unpacking libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 135s Selecting previously unselected package node-bootstrap-sass. 135s Preparing to unpack .../145-node-bootstrap-sass_3.4.3-2_all.deb ... 135s Unpacking node-bootstrap-sass (3.4.3-2) ... 135s Selecting previously unselected package node-html5shiv. 135s Preparing to unpack .../146-node-html5shiv_3.7.3+dfsg-5_all.deb ... 135s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 135s Selecting previously unselected package node-normalize.css. 135s Preparing to unpack .../147-node-normalize.css_8.0.1-5_all.deb ... 135s Unpacking node-normalize.css (8.0.1-5) ... 135s Selecting previously unselected package pandoc-data. 135s Preparing to unpack .../148-pandoc-data_3.1.3-1_all.deb ... 135s Unpacking pandoc-data (3.1.3-1) ... 135s Selecting previously unselected package pandoc. 135s Preparing to unpack .../149-pandoc_3.1.3+ds-2_s390x.deb ... 135s Unpacking pandoc (3.1.3+ds-2) ... 137s Selecting previously unselected package pkgconf-bin. 137s Preparing to unpack .../150-pkgconf-bin_1.8.1-2_s390x.deb ... 137s Unpacking pkgconf-bin (1.8.1-2) ... 137s Selecting previously unselected package pkgconf:s390x. 137s Preparing to unpack .../151-pkgconf_1.8.1-2_s390x.deb ... 137s Unpacking pkgconf:s390x (1.8.1-2) ... 137s Selecting previously unselected package pkg-config:s390x. 137s Preparing to unpack .../152-pkg-config_1.8.1-2_s390x.deb ... 137s Unpacking pkg-config:s390x (1.8.1-2) ... 137s Selecting previously unselected package zip. 137s Preparing to unpack .../153-zip_3.0-13_s390x.deb ... 137s Unpacking zip (3.0-13) ... 137s Selecting previously unselected package unzip. 137s Preparing to unpack .../154-unzip_6.0-28ubuntu3_s390x.deb ... 137s Unpacking unzip (6.0-28ubuntu3) ... 137s Selecting previously unselected package xdg-utils. 137s Preparing to unpack .../155-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 137s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 137s Selecting previously unselected package r-base-core. 137s Preparing to unpack .../156-r-base-core_4.3.2-1build1_s390x.deb ... 137s Unpacking r-base-core (4.3.2-1build1) ... 137s Selecting previously unselected package liblzma-dev:s390x. 137s Preparing to unpack .../157-liblzma-dev_5.4.5-0.3_s390x.deb ... 137s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 137s Selecting previously unselected package r-base-dev. 137s Preparing to unpack .../158-r-base-dev_4.3.2-1build1_all.deb ... 137s Unpacking r-base-dev (4.3.2-1build1) ... 137s Selecting previously unselected package pkg-r-autopkgtest. 137s Preparing to unpack .../159-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 137s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 137s Selecting previously unselected package r-bioc-biocgenerics. 137s Preparing to unpack .../160-r-bioc-biocgenerics_0.48.1-2_all.deb ... 137s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 137s Selecting previously unselected package r-bioc-biobase. 137s Preparing to unpack .../161-r-bioc-biobase_2.62.0-1_s390x.deb ... 137s Unpacking r-bioc-biobase (2.62.0-1) ... 137s Selecting previously unselected package r-bioc-s4vectors. 137s Preparing to unpack .../162-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 137s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 137s Selecting previously unselected package r-bioc-iranges. 137s Preparing to unpack .../163-r-bioc-iranges_2.36.0-1_s390x.deb ... 137s Unpacking r-bioc-iranges (2.36.0-1) ... 137s Selecting previously unselected package r-cran-dbi. 137s Preparing to unpack .../164-r-cran-dbi_1.2.2-1_all.deb ... 137s Unpacking r-cran-dbi (1.2.2-1) ... 137s Selecting previously unselected package r-cran-bit. 137s Preparing to unpack .../165-r-cran-bit_4.0.5-1_s390x.deb ... 137s Unpacking r-cran-bit (4.0.5-1) ... 137s Selecting previously unselected package r-cran-bit64. 137s Preparing to unpack .../166-r-cran-bit64_4.0.5-1_s390x.deb ... 137s Unpacking r-cran-bit64 (4.0.5-1) ... 137s Selecting previously unselected package r-cran-rlang. 137s Preparing to unpack .../167-r-cran-rlang_1.1.3-1_s390x.deb ... 137s Unpacking r-cran-rlang (1.1.3-1) ... 137s Selecting previously unselected package r-cran-cli. 137s Preparing to unpack .../168-r-cran-cli_3.6.2-1_s390x.deb ... 137s Unpacking r-cran-cli (3.6.2-1) ... 138s Selecting previously unselected package r-cran-glue. 138s Preparing to unpack .../169-r-cran-glue_1.7.0-1_s390x.deb ... 138s Unpacking r-cran-glue (1.7.0-1) ... 138s Selecting previously unselected package r-cran-lifecycle. 138s Preparing to unpack .../170-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 138s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 138s Selecting previously unselected package r-cran-vctrs. 138s Preparing to unpack .../171-r-cran-vctrs_0.6.5-1_s390x.deb ... 138s Unpacking r-cran-vctrs (0.6.5-1) ... 138s Selecting previously unselected package r-cran-blob. 138s Preparing to unpack .../172-r-cran-blob_1.2.4-1_all.deb ... 138s Unpacking r-cran-blob (1.2.4-1) ... 138s Selecting previously unselected package r-cran-fastmap. 138s Preparing to unpack .../173-r-cran-fastmap_1.1.1-1_s390x.deb ... 138s Unpacking r-cran-fastmap (1.1.1-1) ... 138s Selecting previously unselected package r-cran-cachem. 138s Preparing to unpack .../174-r-cran-cachem_1.0.8-1_s390x.deb ... 138s Unpacking r-cran-cachem (1.0.8-1) ... 138s Selecting previously unselected package r-cran-memoise. 138s Preparing to unpack .../175-r-cran-memoise_2.0.1-1_all.deb ... 138s Unpacking r-cran-memoise (2.0.1-1) ... 138s Selecting previously unselected package r-cran-pkgconfig. 138s Preparing to unpack .../176-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 138s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 138s Selecting previously unselected package r-cran-plogr. 138s Preparing to unpack .../177-r-cran-plogr_0.2.0-3build1_all.deb ... 138s Unpacking r-cran-plogr (0.2.0-3build1) ... 138s Selecting previously unselected package r-cran-cpp11. 138s Preparing to unpack .../178-r-cran-cpp11_0.4.7-1_all.deb ... 138s Unpacking r-cran-cpp11 (0.4.7-1) ... 138s Selecting previously unselected package r-cran-rsqlite. 138s Preparing to unpack .../179-r-cran-rsqlite_2.3.4-1_s390x.deb ... 138s Unpacking r-cran-rsqlite (2.3.4-1) ... 138s Selecting previously unselected package r-cran-curl. 138s Preparing to unpack .../180-r-cran-curl_5.2.0+dfsg-1_s390x.deb ... 138s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 138s Selecting previously unselected package r-cran-jsonlite. 138s Preparing to unpack .../181-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 138s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 138s Selecting previously unselected package r-cran-mime. 138s Preparing to unpack .../182-r-cran-mime_0.12-1_s390x.deb ... 138s Unpacking r-cran-mime (0.12-1) ... 138s Selecting previously unselected package r-cran-sys. 138s Preparing to unpack .../183-r-cran-sys_3.4.2-1_s390x.deb ... 138s Unpacking r-cran-sys (3.4.2-1) ... 138s Selecting previously unselected package r-cran-askpass. 138s Preparing to unpack .../184-r-cran-askpass_1.2.0-1_s390x.deb ... 138s Unpacking r-cran-askpass (1.2.0-1) ... 138s Selecting previously unselected package r-cran-openssl. 138s Preparing to unpack .../185-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ... 138s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 138s Selecting previously unselected package r-cran-r6. 138s Preparing to unpack .../186-r-cran-r6_2.5.1-1_all.deb ... 138s Unpacking r-cran-r6 (2.5.1-1) ... 138s Selecting previously unselected package r-cran-httr. 138s Preparing to unpack .../187-r-cran-httr_1.4.7+dfsg-1_all.deb ... 138s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 138s Selecting previously unselected package r-cran-png. 138s Preparing to unpack .../188-r-cran-png_0.1-8-1_s390x.deb ... 138s Unpacking r-cran-png (0.1-8-1) ... 138s Selecting previously unselected package r-bioc-zlibbioc. 138s Preparing to unpack .../189-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 138s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 138s Selecting previously unselected package r-bioc-xvector. 138s Preparing to unpack .../190-r-bioc-xvector_0.42.0-1_s390x.deb ... 138s Unpacking r-bioc-xvector (0.42.0-1) ... 138s Selecting previously unselected package r-cran-bitops. 138s Preparing to unpack .../191-r-cran-bitops_1.0-7-1_s390x.deb ... 138s Unpacking r-cran-bitops (1.0-7-1) ... 138s Selecting previously unselected package r-cran-rcurl. 138s Preparing to unpack .../192-r-cran-rcurl_1.98-1.14+dfsg-1_s390x.deb ... 138s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 138s Selecting previously unselected package r-bioc-genomeinfodbdata. 138s Preparing to unpack .../193-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 138s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 138s Selecting previously unselected package r-bioc-genomeinfodb. 138s Preparing to unpack .../194-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 138s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 138s Selecting previously unselected package r-cran-crayon. 138s Preparing to unpack .../195-r-cran-crayon_1.5.2-1_all.deb ... 138s Unpacking r-cran-crayon (1.5.2-1) ... 138s Selecting previously unselected package r-bioc-biostrings. 138s Preparing to unpack .../196-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 138s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 138s Selecting previously unselected package r-bioc-keggrest. 138s Preparing to unpack .../197-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 138s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 138s Selecting previously unselected package r-bioc-annotationdbi. 138s Preparing to unpack .../198-r-bioc-annotationdbi_1.64.1-1_all.deb ... 138s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 139s Selecting previously unselected package r-cran-r.methodss3. 139s Preparing to unpack .../199-r-cran-r.methodss3_1.8.2-1_all.deb ... 139s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 139s Selecting previously unselected package r-cran-r.oo. 139s Preparing to unpack .../200-r-cran-r.oo_1.26.0-1_all.deb ... 139s Unpacking r-cran-r.oo (1.26.0-1) ... 139s Selecting previously unselected package r-cran-r.utils. 139s Preparing to unpack .../201-r-cran-r.utils_2.12.3-1_all.deb ... 139s Unpacking r-cran-r.utils (2.12.3-1) ... 139s Selecting previously unselected package r-cran-matrixstats. 139s Preparing to unpack .../202-r-cran-matrixstats_1.2.0-1_s390x.deb ... 139s Unpacking r-cran-matrixstats (1.2.0-1) ... 139s Selecting previously unselected package r-bioc-aroma.light. 139s Preparing to unpack .../203-r-bioc-aroma.light_3.32.0-1_all.deb ... 139s Unpacking r-bioc-aroma.light (3.32.0-1) ... 139s Selecting previously unselected package r-cran-generics. 139s Preparing to unpack .../204-r-cran-generics_0.1.3-1_all.deb ... 139s Unpacking r-cran-generics (0.1.3-1) ... 139s Selecting previously unselected package r-cran-magrittr. 139s Preparing to unpack .../205-r-cran-magrittr_2.0.3-1_s390x.deb ... 139s Unpacking r-cran-magrittr (2.0.3-1) ... 139s Selecting previously unselected package r-cran-fansi. 139s Preparing to unpack .../206-r-cran-fansi_1.0.5-1_s390x.deb ... 139s Unpacking r-cran-fansi (1.0.5-1) ... 139s Selecting previously unselected package r-cran-utf8. 139s Preparing to unpack .../207-r-cran-utf8_1.2.4-1_s390x.deb ... 139s Unpacking r-cran-utf8 (1.2.4-1) ... 139s Selecting previously unselected package r-cran-pillar. 139s Preparing to unpack .../208-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 139s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 139s Selecting previously unselected package r-cran-tibble. 139s Preparing to unpack .../209-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 139s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 139s Selecting previously unselected package r-cran-withr. 139s Preparing to unpack .../210-r-cran-withr_2.5.0-1_all.deb ... 139s Unpacking r-cran-withr (2.5.0-1) ... 139s Selecting previously unselected package r-cran-tidyselect. 139s Preparing to unpack .../211-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 139s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 139s Selecting previously unselected package r-cran-dplyr. 139s Preparing to unpack .../212-r-cran-dplyr_1.1.4-1_s390x.deb ... 139s Unpacking r-cran-dplyr (1.1.4-1) ... 139s Selecting previously unselected package r-cran-purrr. 139s Preparing to unpack .../213-r-cran-purrr_1.0.2-1_s390x.deb ... 139s Unpacking r-cran-purrr (1.0.2-1) ... 139s Selecting previously unselected package r-cran-stringi. 139s Preparing to unpack .../214-r-cran-stringi_1.8.3-1_s390x.deb ... 139s Unpacking r-cran-stringi (1.8.3-1) ... 139s Selecting previously unselected package r-cran-stringr. 139s Preparing to unpack .../215-r-cran-stringr_1.5.1-1_all.deb ... 139s Unpacking r-cran-stringr (1.5.1-1) ... 139s Selecting previously unselected package r-cran-tidyr. 139s Preparing to unpack .../216-r-cran-tidyr_1.3.1-1_s390x.deb ... 139s Unpacking r-cran-tidyr (1.3.1-1) ... 139s Selecting previously unselected package r-cran-dbplyr. 139s Preparing to unpack .../217-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 139s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 139s Selecting previously unselected package r-cran-filelock. 139s Preparing to unpack .../218-r-cran-filelock_1.0.3-1_s390x.deb ... 139s Unpacking r-cran-filelock (1.0.3-1) ... 139s Selecting previously unselected package r-bioc-biocfilecache. 139s Preparing to unpack .../219-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 139s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 139s Selecting previously unselected package r-bioc-biocio. 139s Preparing to unpack .../220-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 139s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 139s Selecting previously unselected package r-cran-formatr. 139s Preparing to unpack .../221-r-cran-formatr_1.14-1_all.deb ... 139s Unpacking r-cran-formatr (1.14-1) ... 139s Selecting previously unselected package r-cran-lambda.r. 139s Preparing to unpack .../222-r-cran-lambda.r_1.2.4-2build1_all.deb ... 139s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 139s Selecting previously unselected package r-cran-futile.options. 139s Preparing to unpack .../223-r-cran-futile.options_1.0.1-3build1_all.deb ... 139s Unpacking r-cran-futile.options (1.0.1-3build1) ... 139s Selecting previously unselected package r-cran-futile.logger. 139s Preparing to unpack .../224-r-cran-futile.logger_1.4.3-4build1_all.deb ... 139s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 139s Selecting previously unselected package r-cran-snow. 139s Preparing to unpack .../225-r-cran-snow_1%3a0.4.4-2_all.deb ... 139s Unpacking r-cran-snow (1:0.4.4-2) ... 139s Selecting previously unselected package r-cran-codetools. 139s Preparing to unpack .../226-r-cran-codetools_0.2-19-1_all.deb ... 139s Unpacking r-cran-codetools (0.2-19-1) ... 139s Selecting previously unselected package r-cran-bh. 139s Preparing to unpack .../227-r-cran-bh_1.84.0-1_all.deb ... 139s Unpacking r-cran-bh (1.84.0-1) ... 139s Selecting previously unselected package r-bioc-biocparallel. 139s Preparing to unpack .../228-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 139s Unpacking r-bioc-biocparallel (1.36.0-1) ... 139s Selecting previously unselected package r-cran-base64enc. 139s Preparing to unpack .../229-r-cran-base64enc_0.1-3-3_s390x.deb ... 139s Unpacking r-cran-base64enc (0.1-3-3) ... 139s Selecting previously unselected package r-cran-digest. 139s Preparing to unpack .../230-r-cran-digest_0.6.34-1_s390x.deb ... 139s Unpacking r-cran-digest (0.6.34-1) ... 139s Selecting previously unselected package r-cran-ellipsis. 139s Preparing to unpack .../231-r-cran-ellipsis_0.3.2-2_s390x.deb ... 139s Unpacking r-cran-ellipsis (0.3.2-2) ... 139s Selecting previously unselected package r-cran-htmltools. 139s Preparing to unpack .../232-r-cran-htmltools_0.5.7-1_s390x.deb ... 139s Unpacking r-cran-htmltools (0.5.7-1) ... 139s Selecting previously unselected package r-cran-evaluate. 139s Preparing to unpack .../233-r-cran-evaluate_0.23-1_all.deb ... 139s Unpacking r-cran-evaluate (0.23-1) ... 139s Selecting previously unselected package r-cran-xfun. 139s Preparing to unpack .../234-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 139s Unpacking r-cran-xfun (0.41+dfsg-1) ... 139s Selecting previously unselected package r-cran-highr. 139s Preparing to unpack .../235-r-cran-highr_0.10+dfsg-1_all.deb ... 139s Unpacking r-cran-highr (0.10+dfsg-1) ... 139s Selecting previously unselected package r-cran-yaml. 139s Preparing to unpack .../236-r-cran-yaml_2.3.8-1_s390x.deb ... 139s Unpacking r-cran-yaml (2.3.8-1) ... 140s Selecting previously unselected package libjs-mathjax. 140s Preparing to unpack .../237-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 140s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 141s Selecting previously unselected package r-cran-knitr. 141s Preparing to unpack .../238-r-cran-knitr_1.45+dfsg-1_all.deb ... 141s Unpacking r-cran-knitr (1.45+dfsg-1) ... 141s Selecting previously unselected package r-cran-jquerylib. 141s Preparing to unpack .../239-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 141s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 141s Selecting previously unselected package r-cran-fs. 141s Preparing to unpack .../240-r-cran-fs_1.6.3+dfsg-1_s390x.deb ... 141s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 141s Selecting previously unselected package r-cran-rappdirs. 141s Preparing to unpack .../241-r-cran-rappdirs_0.3.3-1_s390x.deb ... 141s Unpacking r-cran-rappdirs (0.3.3-1) ... 141s Selecting previously unselected package r-cran-sass. 141s Preparing to unpack .../242-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 141s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 141s Selecting previously unselected package r-cran-bslib. 141s Preparing to unpack .../243-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 141s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 141s Selecting previously unselected package r-cran-fontawesome. 141s Preparing to unpack .../244-r-cran-fontawesome_0.5.2-1_all.deb ... 141s Unpacking r-cran-fontawesome (0.5.2-1) ... 141s Selecting previously unselected package r-cran-tinytex. 141s Preparing to unpack .../245-r-cran-tinytex_0.49-1_all.deb ... 141s Unpacking r-cran-tinytex (0.49-1) ... 141s Selecting previously unselected package libjs-modernizr. 141s Preparing to unpack .../246-libjs-modernizr_2.6.2+ds1-5_all.deb ... 141s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 141s Selecting previously unselected package r-cran-littler. 141s Preparing to unpack .../247-r-cran-littler_0.3.19-1_s390x.deb ... 141s Unpacking r-cran-littler (0.3.19-1) ... 141s Selecting previously unselected package r-cran-pkgkitten. 141s Preparing to unpack .../248-r-cran-pkgkitten_0.2.3-1_all.deb ... 141s Unpacking r-cran-pkgkitten (0.2.3-1) ... 141s Selecting previously unselected package r-cran-rcpp. 141s Preparing to unpack .../249-r-cran-rcpp_1.0.12-1_s390x.deb ... 141s Unpacking r-cran-rcpp (1.0.12-1) ... 141s Selecting previously unselected package r-cran-later. 141s Preparing to unpack .../250-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 141s Unpacking r-cran-later (1.3.2+dfsg-1) ... 141s Selecting previously unselected package r-cran-promises. 141s Preparing to unpack .../251-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 141s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 141s Selecting previously unselected package r-cran-httpuv. 141s Preparing to unpack .../252-r-cran-httpuv_1.6.14+dfsg-1_s390x.deb ... 141s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 141s Selecting previously unselected package r-cran-xtable. 141s Preparing to unpack .../253-r-cran-xtable_1%3a1.8-4-2_all.deb ... 141s Unpacking r-cran-xtable (1:1.8-4-2) ... 141s Selecting previously unselected package r-cran-sourcetools. 141s Preparing to unpack .../254-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 141s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 141s Selecting previously unselected package r-cran-commonmark. 141s Preparing to unpack .../255-r-cran-commonmark_1.9.1-1_s390x.deb ... 141s Unpacking r-cran-commonmark (1.9.1-1) ... 141s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 141s Preparing to unpack .../256-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 141s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 141s Selecting previously unselected package r-cran-shiny. 141s Preparing to unpack .../257-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 141s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 142s Selecting previously unselected package r-cran-rmarkdown. 142s Preparing to unpack .../258-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 142s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 142s Selecting previously unselected package r-cran-bookdown. 142s Preparing to unpack .../259-r-cran-bookdown_0.37+dfsg-1_all.deb ... 142s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 142s Selecting previously unselected package r-cran-biocmanager. 142s Preparing to unpack .../260-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 142s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 142s Selecting previously unselected package tex-common. 142s Preparing to unpack .../261-tex-common_6.18_all.deb ... 142s Unpacking tex-common (6.18) ... 142s Selecting previously unselected package t1utils. 142s Preparing to unpack .../262-t1utils_1.41-4build2_s390x.deb ... 142s Unpacking t1utils (1.41-4build2) ... 142s Selecting previously unselected package texlive-binaries. 142s Preparing to unpack .../263-texlive-binaries_2023.20230311.66589-9_s390x.deb ... 142s Unpacking texlive-binaries (2023.20230311.66589-9) ... 142s Selecting previously unselected package texlive-base. 142s Preparing to unpack .../264-texlive-base_2023.20240207-1_all.deb ... 142s Unpacking texlive-base (2023.20240207-1) ... 144s Selecting previously unselected package texlive-latex-base. 144s Preparing to unpack .../265-texlive-latex-base_2023.20240207-1_all.deb ... 144s Unpacking texlive-latex-base (2023.20240207-1) ... 145s Selecting previously unselected package texlive-bibtex-extra. 145s Preparing to unpack .../266-texlive-bibtex-extra_2023.20240207-1_all.deb ... 145s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 152s Selecting previously unselected package r-bioc-biocstyle. 152s Preparing to unpack .../267-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 152s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 152s Selecting previously unselected package r-cran-xml. 152s Preparing to unpack .../268-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 152s Unpacking r-cran-xml (3.99-0.16.1-1) ... 152s Selecting previously unselected package r-cran-hms. 152s Preparing to unpack .../269-r-cran-hms_1.1.3-1_all.deb ... 152s Unpacking r-cran-hms (1.1.3-1) ... 152s Selecting previously unselected package r-cran-prettyunits. 152s Preparing to unpack .../270-r-cran-prettyunits_1.2.0-1_all.deb ... 152s Unpacking r-cran-prettyunits (1.2.0-1) ... 152s Selecting previously unselected package r-cran-progress. 152s Preparing to unpack .../271-r-cran-progress_1.2.3-1_all.deb ... 152s Unpacking r-cran-progress (1.2.3-1) ... 152s Selecting previously unselected package r-cran-xml2. 152s Preparing to unpack .../272-r-cran-xml2_1.3.6-1_s390x.deb ... 152s Unpacking r-cran-xml2 (1.3.6-1) ... 152s Selecting previously unselected package r-bioc-biomart. 152s Preparing to unpack .../273-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 152s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 152s Selecting previously unselected package r-bioc-genomicranges. 152s Preparing to unpack .../274-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 152s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 152s Selecting previously unselected package r-bioc-rhtslib. 152s Preparing to unpack .../275-r-bioc-rhtslib_2.4.1+dfsg-1_s390x.deb ... 152s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 152s Selecting previously unselected package r-bioc-rsamtools. 152s Preparing to unpack .../276-r-bioc-rsamtools_2.18.0+dfsg-1_s390x.deb ... 152s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 153s Selecting previously unselected package r-bioc-matrixgenerics. 153s Preparing to unpack .../277-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 153s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 153s Selecting previously unselected package r-cran-lattice. 153s Preparing to unpack .../278-r-cran-lattice_0.22-5-1_s390x.deb ... 153s Unpacking r-cran-lattice (0.22-5-1) ... 153s Selecting previously unselected package r-cran-matrix. 153s Preparing to unpack .../279-r-cran-matrix_1.6-5-1_s390x.deb ... 153s Unpacking r-cran-matrix (1.6-5-1) ... 153s Selecting previously unselected package r-cran-abind. 153s Preparing to unpack .../280-r-cran-abind_1.4-5-2_all.deb ... 153s Unpacking r-cran-abind (1.4-5-2) ... 153s Selecting previously unselected package r-bioc-s4arrays. 153s Preparing to unpack .../281-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 153s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 153s Selecting previously unselected package r-bioc-sparsearray. 153s Preparing to unpack .../282-r-bioc-sparsearray_1.2.4+dfsg-1_s390x.deb ... 153s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 153s Selecting previously unselected package r-bioc-delayedarray. 153s Preparing to unpack .../283-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ... 153s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 153s Selecting previously unselected package r-bioc-summarizedexperiment. 153s Preparing to unpack .../284-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 153s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 153s Selecting previously unselected package r-bioc-genomicalignments. 153s Preparing to unpack .../285-r-bioc-genomicalignments_1.38.2-1_s390x.deb ... 153s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 153s Selecting previously unselected package r-cran-rjson. 153s Preparing to unpack .../286-r-cran-rjson_0.2.21-1_s390x.deb ... 153s Unpacking r-cran-rjson (0.2.21-1) ... 153s Selecting previously unselected package r-cran-restfulr. 153s Preparing to unpack .../287-r-cran-restfulr_0.0.15-1_s390x.deb ... 153s Unpacking r-cran-restfulr (0.0.15-1) ... 153s Selecting previously unselected package r-bioc-rtracklayer. 153s Preparing to unpack .../288-r-bioc-rtracklayer_1.62.0-1_s390x.deb ... 153s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 153s Selecting previously unselected package r-bioc-bsgenome. 153s Preparing to unpack .../289-r-bioc-bsgenome_1.70.2-1_all.deb ... 153s Unpacking r-bioc-bsgenome (1.70.2-1) ... 153s Selecting previously unselected package r-bioc-dnacopy. 153s Preparing to unpack .../290-r-bioc-dnacopy_1.76.0-1_s390x.deb ... 153s Unpacking r-bioc-dnacopy (1.76.0-1) ... 153s Selecting previously unselected package r-bioc-genomicfeatures. 153s Preparing to unpack .../291-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 153s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 153s Selecting previously unselected package r-bioc-org.hs.eg.db. 153s Preparing to unpack .../292-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 153s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 156s Selecting previously unselected package r-bioc-variantannotation. 156s Preparing to unpack .../293-r-bioc-variantannotation_1.48.1-1build1_s390x.deb ... 156s Unpacking r-bioc-variantannotation (1.48.1-1build1) ... 156s Selecting previously unselected package r-cran-rcolorbrewer. 156s Preparing to unpack .../294-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 156s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 156s Selecting previously unselected package r-cran-data.table. 156s Preparing to unpack .../295-r-cran-data.table_1.14.10+dfsg-1_s390x.deb ... 156s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 156s Selecting previously unselected package r-cran-gtable. 156s Preparing to unpack .../296-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 156s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 156s Selecting previously unselected package r-cran-isoband. 156s Preparing to unpack .../297-r-cran-isoband_0.2.7-1_s390x.deb ... 156s Unpacking r-cran-isoband (0.2.7-1) ... 156s Selecting previously unselected package r-cran-mass. 156s Preparing to unpack .../298-r-cran-mass_7.3-60.0.1-1_s390x.deb ... 156s Unpacking r-cran-mass (7.3-60.0.1-1) ... 156s Selecting previously unselected package r-cran-nlme. 156s Preparing to unpack .../299-r-cran-nlme_3.1.164-1_s390x.deb ... 156s Unpacking r-cran-nlme (3.1.164-1) ... 156s Selecting previously unselected package r-cran-mgcv. 156s Preparing to unpack .../300-r-cran-mgcv_1.9-1-1_s390x.deb ... 156s Unpacking r-cran-mgcv (1.9-1-1) ... 156s Selecting previously unselected package r-cran-farver. 156s Preparing to unpack .../301-r-cran-farver_2.1.1-1_s390x.deb ... 156s Unpacking r-cran-farver (2.1.1-1) ... 156s Selecting previously unselected package r-cran-labeling. 156s Preparing to unpack .../302-r-cran-labeling_0.4.3-1_all.deb ... 156s Unpacking r-cran-labeling (0.4.3-1) ... 156s Selecting previously unselected package r-cran-colorspace. 156s Preparing to unpack .../303-r-cran-colorspace_2.1-0+dfsg-1_s390x.deb ... 156s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 156s Selecting previously unselected package r-cran-munsell. 156s Preparing to unpack .../304-r-cran-munsell_0.5.0-2build1_all.deb ... 156s Unpacking r-cran-munsell (0.5.0-2build1) ... 156s Selecting previously unselected package r-cran-viridislite. 156s Preparing to unpack .../305-r-cran-viridislite_0.4.2-2_all.deb ... 156s Unpacking r-cran-viridislite (0.4.2-2) ... 156s Selecting previously unselected package r-cran-scales. 156s Preparing to unpack .../306-r-cran-scales_1.3.0-1_all.deb ... 156s Unpacking r-cran-scales (1.3.0-1) ... 156s Selecting previously unselected package r-cran-ggplot2. 156s Preparing to unpack .../307-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 156s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 156s Selecting previously unselected package r-cran-gridextra. 156s Preparing to unpack .../308-r-cran-gridextra_2.3-3build1_all.deb ... 156s Unpacking r-cran-gridextra (2.3-3build1) ... 157s Selecting previously unselected package r-cran-vgam. 157s Preparing to unpack .../309-r-cran-vgam_1.1-9-1_s390x.deb ... 157s Unpacking r-cran-vgam (1.1-9-1) ... 157s Selecting previously unselected package r-cran-mclust. 157s Preparing to unpack .../310-r-cran-mclust_6.0.1-1_s390x.deb ... 157s Unpacking r-cran-mclust (6.0.1-1) ... 157s Selecting previously unselected package r-bioc-rhdf5lib. 157s Preparing to unpack .../311-r-bioc-rhdf5lib_1.24.2+dfsg-1_s390x.deb ... 157s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 157s Selecting previously unselected package r-bioc-rhdf5filters. 157s Preparing to unpack .../312-r-bioc-rhdf5filters_1.14.1+dfsg-3_s390x.deb ... 157s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 157s Selecting previously unselected package r-bioc-rhdf5. 157s Preparing to unpack .../313-r-bioc-rhdf5_2.46.1+dfsg-1_s390x.deb ... 157s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 157s Selecting previously unselected package r-bioc-purecn. 157s Preparing to unpack .../314-r-bioc-purecn_2.8.1+dfsg-1_all.deb ... 157s Unpacking r-bioc-purecn (2.8.1+dfsg-1) ... 157s Selecting previously unselected package r-cran-brio. 157s Preparing to unpack .../315-r-cran-brio_1.1.4-1_s390x.deb ... 157s Unpacking r-cran-brio (1.1.4-1) ... 157s Selecting previously unselected package r-cran-ps. 157s Preparing to unpack .../316-r-cran-ps_1.7.6-1_s390x.deb ... 157s Unpacking r-cran-ps (1.7.6-1) ... 157s Selecting previously unselected package r-cran-processx. 157s Preparing to unpack .../317-r-cran-processx_3.8.3-1_s390x.deb ... 157s Unpacking r-cran-processx (3.8.3-1) ... 157s Selecting previously unselected package r-cran-callr. 157s Preparing to unpack .../318-r-cran-callr_3.7.3-2_all.deb ... 157s Unpacking r-cran-callr (3.7.3-2) ... 157s Selecting previously unselected package r-cran-lazyeval. 157s Preparing to unpack .../319-r-cran-lazyeval_0.2.2-1build1_s390x.deb ... 157s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 157s Selecting previously unselected package r-cran-rex. 157s Preparing to unpack .../320-r-cran-rex_1.2.1-1_all.deb ... 157s Unpacking r-cran-rex (1.2.1-1) ... 157s Selecting previously unselected package r-cran-covr. 157s Preparing to unpack .../321-r-cran-covr_3.6.4+dfsg-1_s390x.deb ... 157s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 157s Selecting previously unselected package r-cran-desc. 157s Preparing to unpack .../322-r-cran-desc_1.4.3-1_all.deb ... 157s Unpacking r-cran-desc (1.4.3-1) ... 157s Selecting previously unselected package r-cran-diffobj. 157s Preparing to unpack .../323-r-cran-diffobj_0.3.5-1_s390x.deb ... 157s Unpacking r-cran-diffobj (0.3.5-1) ... 157s Selecting previously unselected package r-cran-globals. 157s Preparing to unpack .../324-r-cran-globals_0.16.2-1_all.deb ... 157s Unpacking r-cran-globals (0.16.2-1) ... 157s Selecting previously unselected package r-cran-listenv. 157s Preparing to unpack .../325-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 157s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 157s Selecting previously unselected package r-cran-parallelly. 157s Preparing to unpack .../326-r-cran-parallelly_1.37.1-1_s390x.deb ... 157s Unpacking r-cran-parallelly (1.37.1-1) ... 157s Selecting previously unselected package r-cran-future. 157s Preparing to unpack .../327-r-cran-future_1.33.1+dfsg-1_all.deb ... 157s Unpacking r-cran-future (1.33.1+dfsg-1) ... 157s Selecting previously unselected package r-cran-getopt. 157s Preparing to unpack .../328-r-cran-getopt_1.20.4-1_all.deb ... 157s Unpacking r-cran-getopt (1.20.4-1) ... 157s Selecting previously unselected package r-cran-markdown. 157s Preparing to unpack .../329-r-cran-markdown_1.12+dfsg-1_all.deb ... 157s Unpacking r-cran-markdown (1.12+dfsg-1) ... 157s Selecting previously unselected package r-cran-optparse. 157s Preparing to unpack .../330-r-cran-optparse_1.7.4-1_all.deb ... 157s Unpacking r-cran-optparse (1.7.4-1) ... 157s Selecting previously unselected package r-cran-pkgbuild. 157s Preparing to unpack .../331-r-cran-pkgbuild_1.4.3-1_all.deb ... 157s Unpacking r-cran-pkgbuild (1.4.3-1) ... 157s Selecting previously unselected package r-cran-rprojroot. 157s Preparing to unpack .../332-r-cran-rprojroot_2.0.4-1_all.deb ... 157s Unpacking r-cran-rprojroot (2.0.4-1) ... 157s Selecting previously unselected package r-cran-pkgload. 157s Preparing to unpack .../333-r-cran-pkgload_1.3.4-1_all.deb ... 157s Unpacking r-cran-pkgload (1.3.4-1) ... 157s Selecting previously unselected package r-cran-praise. 157s Preparing to unpack .../334-r-cran-praise_1.0.0-4build1_all.deb ... 157s Unpacking r-cran-praise (1.0.0-4build1) 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r-cran-dbi (1.2.2-1) ... 162s Setting up r-cran-highr (0.10+dfsg-1) ... 162s Setting up r-cran-prettyunits (1.2.0-1) ... 162s Setting up r-cran-fansi (1.0.5-1) ... 162s Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 162s Setting up r-cran-mass (7.3-60.0.1-1) ... 162s Setting up r-cran-mclust (6.0.1-1) ... 162s Setting up r-cran-snow (1:0.4.4-2) ... 162s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 162s Setting up r-cran-glue (1.7.0-1) ... 162s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 162s Setting up r-cran-bit (4.0.5-1) ... 162s Setting up r-cran-xtable (1:1.8-4-2) ... 162s Setting up r-cran-cli (3.6.2-1) ... 162s Setting up gfortran (4:13.2.0-7ubuntu1) ... 162s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 162s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 162s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 162s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 162s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 162s Setting up r-cran-bitops (1.0-7-1) ... 162s Setting up r-cran-rprojroot (2.0.4-1) ... 162s Setting up r-cran-bit64 (4.0.5-1) ... 162s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 162s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 162s Setting up r-cran-askpass (1.2.0-1) ... 162s Setting up r-cran-fastmap (1.1.1-1) ... 162s Setting up r-cran-png (0.1-8-1) ... 162s Setting up r-cran-r.methodss3 (1.8.2-1) ... 162s Setting up r-bioc-biobase (2.62.0-1) ... 162s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 162s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 162s Setting up r-cran-getopt (1.20.4-1) ... 162s Setting up r-cran-utf8 (1.2.4-1) ... 162s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 162s Setting up r-cran-parallelly (1.37.1-1) ... 162s Setting up r-cran-stringi (1.8.3-1) ... 162s Setting up texlive-latex-base (2023.20240207-1) ... 162s Setting up r-cran-rex (1.2.1-1) ... 162s Setting up r-cran-markdown (1.12+dfsg-1) ... 162s Setting up r-cran-cpp11 (0.4.7-1) ... 162s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 162s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 162s Setting up r-cran-isoband (0.2.7-1) ... 162s Setting up r-cran-futile.logger (1.4.3-4build1) ... 162s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 162s Setting up r-cran-later (1.3.2+dfsg-1) ... 162s Setting up r-cran-matrix (1.6-5-1) ... 162s Setting up r-cran-tinytex (0.49-1) ... 162s Setting up r-cran-knitr (1.45+dfsg-1) ... 162s Setting up r-cran-mgcv (1.9-1-1) ... 162s Setting up r-bioc-dnacopy (1.76.0-1) ... 162s Setting up r-cran-cachem (1.0.8-1) ... 162s Setting up r-bioc-iranges (2.36.0-1) ... 162s Setting up r-cran-rjson (0.2.21-1) ... 162s Setting up r-cran-globals (0.16.2-1) ... 162s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 162s Setting up r-cran-restfulr (0.0.15-1) ... 162s Setting up r-cran-optparse (1.7.4-1) ... 162s Setting up r-cran-vctrs (0.6.5-1) ... 162s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 162s Setting up r-cran-ellipsis (0.3.2-2) ... 162s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 162s Setting up r-base-dev (4.3.2-1build1) ... 162s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 162s Setting up r-cran-stringr (1.5.1-1) ... 162s Setting up r-bioc-biocparallel (1.36.0-1) ... 162s Setting up r-cran-callr (3.7.3-2) ... 162s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 162s Setting up r-cran-desc (1.4.3-1) ... 162s Setting up r-cran-xml2 (1.3.6-1) ... 162s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 162s Setting up r-cran-munsell (0.5.0-2build1) ... 162s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 162s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 162s Setting up r-cran-r.oo (1.26.0-1) ... 162s Setting up r-cran-future (1.33.1+dfsg-1) ... 162s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 162s Setting up texlive-bibtex-extra (2023.20240207-1) ... 162s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 162s Setting up r-cran-httr (1.4.7+dfsg-1) ... 162s Setting up r-cran-gridextra (2.3-3build1) ... 162s Setting up r-cran-hms (1.1.3-1) ... 162s Setting up r-cran-scales (1.3.0-1) ... 162s Setting up r-cran-memoise (2.0.1-1) ... 162s Setting up r-cran-covr (3.6.4+dfsg-1) ... 163s Setting up r-cran-promises (1.2.1+dfsg-1) ... 163s Setting up r-cran-purrr (1.0.2-1) ... 163s Setting up r-cran-blob (1.2.4-1) ... 163s Setting up r-cran-htmltools (0.5.7-1) ... 163s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 163s Setting up r-bioc-xvector (0.42.0-1) ... 163s Setting up r-cran-pkgbuild (1.4.3-1) ... 163s Setting up r-cran-sass (0.4.8+dfsg-1) ... 163s Setting up r-cran-dplyr (1.1.4-1) ... 163s Setting up r-cran-rsqlite (2.3.4-1) ... 163s Setting up r-cran-progress (1.2.3-1) ... 163s Setting up r-cran-pkgload (1.3.4-1) ... 163s Setting up r-cran-r.utils (2.12.3-1) ... 163s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 163s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 163s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 163s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 163s Setting up r-cran-rematch2 (2.1.2-2build1) ... 163s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 163s Setting up r-cran-fontawesome (0.5.2-1) ... 163s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 163s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 163s Setting up r-cran-waldo (0.5.2-1build1) ... 163s Setting up r-cran-tidyr (1.3.1-1) ... 163s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 163s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 163s Setting up r-bioc-aroma.light (3.32.0-1) ... 163s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 163s Setting up r-cran-r.cache (0.16.0-1) ... 163s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 163s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 163s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 163s Setting up r-bioc-annotationdbi (1.64.1-1) ... 163s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 163s Setting up r-cran-testthat (3.2.1-1) ... 163s Setting up r-cran-pscbs (0.66.0-2) ... 163s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 163s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 163s Setting up r-bioc-genomicalignments (1.38.2-1) ... 163s Setting up r-cran-bookdown (0.37+dfsg-1) ... 163s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 163s Setting up r-bioc-rtracklayer (1.62.0-1) ... 163s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 163s Setting up r-bioc-bsgenome (1.70.2-1) ... 163s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 163s Setting up r-bioc-variantannotation (1.48.1-1build1) ... 163s Setting up r-bioc-purecn (2.8.1+dfsg-1) ... 163s Setting up autopkgtest-satdep (0) ... 163s Processing triggers for man-db (2.12.0-3) ... 163s Processing triggers for install-info (7.1-3) ... 163s Processing triggers for libc-bin (2.39-0ubuntu2) ... 164s Processing triggers for tex-common (6.18) ... 164s Running updmap-sys. This may take some time... done. 164s Running mktexlsr /var/lib/texmf ... done. 164s Building format(s) --all. 209s This may take some time... done. 218s (Reading database ... 106716 files and directories currently installed.) 218s Removing autopkgtest-satdep (0) ... 218s autopkgtest [19:02:35]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 218s autopkgtest [19:02:35]: test pkg-r-autopkgtest: [----------------------- 219s Test: Try to load the R library PureCN 219s 219s R version 4.3.2 (2023-10-31) -- "Eye Holes" 219s Copyright (C) 2023 The R Foundation for Statistical Computing 219s Platform: s390x-ibm-linux-gnu (64-bit) 219s 219s R is free software and comes with ABSOLUTELY NO WARRANTY. 219s You are welcome to redistribute it under certain conditions. 219s Type 'license()' or 'licence()' for distribution details. 219s 219s R is a collaborative project with many contributors. 219s Type 'contributors()' for more information and 219s 'citation()' on how to cite R or R packages in publications. 219s 219s Type 'demo()' for some demos, 'help()' for on-line help, or 219s 'help.start()' for an HTML browser interface to help. 219s Type 'q()' to quit R. 219s 219s > library('PureCN') 219s Loading required package: DNAcopy 219s Loading required package: VariantAnnotation 219s Loading required package: BiocGenerics 219s 219s Attaching package: ‘BiocGenerics’ 219s 219s The following objects are masked from ‘package:stats’: 219s 219s IQR, mad, sd, var, xtabs 219s 219s The following objects are masked from ‘package:base’: 219s 219s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 219s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 219s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 219s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 219s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 219s table, tapply, union, unique, unsplit, which.max, which.min 219s 219s Loading required package: MatrixGenerics 219s Loading required package: matrixStats 219s 219s Attaching package: ‘MatrixGenerics’ 219s 219s The following objects are masked from ‘package:matrixStats’: 219s 219s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 219s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 219s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 219s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 219s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 219s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 219s colWeightedMeans, colWeightedMedians, colWeightedSds, 219s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 219s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 219s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 219s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 219s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 219s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 219s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 219s rowWeightedSds, rowWeightedVars 219s 219s Loading required package: GenomeInfoDb 219s Loading required package: S4Vectors 219s Loading required package: stats4 220s 220s Attaching package: ‘S4Vectors’ 220s 220s The following object is masked from ‘package:utils’: 220s 220s findMatches 220s 220s The following objects are masked from ‘package:base’: 220s 220s expand.grid, I, unname 220s 220s Loading required package: IRanges 221s Loading required package: GenomicRanges 221s Loading required package: SummarizedExperiment 221s Loading required package: Biobase 221s Welcome to Bioconductor 221s 221s Vignettes contain introductory material; view with 221s 'browseVignettes()'. To cite Bioconductor, see 221s 'citation("Biobase")', and for packages 'citation("pkgname")'. 221s 221s 221s Attaching package: ‘Biobase’ 221s 221s The following object is masked from ‘package:MatrixGenerics’: 221s 221s rowMedians 221s 221s The following objects are masked from ‘package:matrixStats’: 221s 221s anyMissing, rowMedians 221s 224s Loading required package: Rsamtools 224s Loading required package: Biostrings 224s Loading required package: XVector 225s 225s Attaching package: ‘Biostrings’ 225s 225s The following object is masked from ‘package:base’: 225s 225s strsplit 225s 231s 231s Attaching package: ‘VariantAnnotation’ 231s 231s The following object is masked from ‘package:base’: 231s 231s tabulate 231s 231s > 231s > 231s Warning message: 231s package ‘VariantAnnotation’ was built under R version 4.3.3 232s Other tests are currently unsupported! 232s They will be progressively added. 232s autopkgtest [19:02:49]: test pkg-r-autopkgtest: -----------------------] 232s pkg-r-autopkgtest PASS 232s autopkgtest [19:02:49]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 233s autopkgtest [19:02:50]: @@@@@@@@@@@@@@@@@@@@ summary 233s pkg-r-autopkgtest PASS 243s Creating nova instance adt-noble-s390x-r-bioc-purecn-20240316-185857-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...