0s autopkgtest [18:46:44]: starting date and time: 2024-03-16 18:46:44+0000 0s autopkgtest [18:46:44]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:46:44]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wdtno8on/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-purecn --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-6.secgroup --name adt-noble-s390x-r-bioc-purecn-20240316-184644-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 197s autopkgtest [18:50:01]: testbed dpkg architecture: s390x 197s autopkgtest [18:50:01]: testbed apt version: 2.7.12 197s autopkgtest [18:50:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 198s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 198s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 199s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 199s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 199s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 199s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB] 199s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 199s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 199s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 199s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3752 kB] 199s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 199s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB] 199s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 201s Fetched 8760 kB in 2s (4050 kB/s) 201s Reading package lists... 203s Reading package lists... 204s Building dependency tree... 204s Reading state information... 204s Calculating upgrade... 204s The following packages will be REMOVED: 204s libssl3 204s The following NEW packages will be installed: 204s libssl3t64 204s The following packages have been kept back: 204s curl 204s The following packages will be upgraded: 204s openssl ubuntu-minimal ubuntu-standard 204s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 204s Need to get 2680 kB of archives. 204s After this operation, 23.6 kB of additional disk space will be used. 204s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 204s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 205s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB] 205s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB] 205s Fetched 2680 kB in 1s (2630 kB/s) 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 205s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 205s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 205s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 205s wget depends on libssl3 (>= 3.0.0). 205s tnftp depends on libssl3 (>= 3.0.0). 205s tcpdump depends on libssl3 (>= 3.0.0). 205s systemd-resolved depends on libssl3 (>= 3.0.0). 205s systemd depends on libssl3 (>= 3.0.0). 205s sudo depends on libssl3 (>= 3.0.0). 205s s390-tools depends on libssl3 (>= 3.0.0). 205s rsync depends on libssl3 (>= 3.0.0). 205s python3-cryptography depends on libssl3 (>= 3.0.0). 205s openssh-server depends on libssl3 (>= 3.0.10). 205s openssh-client depends on libssl3 (>= 3.0.10). 205s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 205s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 205s libssh-4:s390x depends on libssl3 (>= 3.0.0). 205s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 205s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 205s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 205s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 205s libnvme1 depends on libssl3 (>= 3.0.0). 205s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 205s libkmod2:s390x depends on libssl3 (>= 3.0.0). 205s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 205s libcurl4:s390x depends on libssl3 (>= 3.0.0). 205s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 205s kmod depends on libssl3 (>= 3.0.0). 205s dhcpcd-base depends on libssl3 (>= 3.0.0). 205s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 205s 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 205s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 205s Selecting previously unselected package libssl3t64:s390x. 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 205s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 205s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 205s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ... 205s Unpacking ubuntu-minimal (1.536) over (1.535) ... 205s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ... 205s Unpacking ubuntu-standard (1.536) over (1.535) ... 205s Setting up ubuntu-minimal (1.536) ... 205s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 205s Setting up ubuntu-standard (1.536) ... 205s Setting up openssl (3.0.13-0ubuntu1) ... 205s Processing triggers for man-db (2.12.0-3) ... 206s Processing triggers for libc-bin (2.39-0ubuntu2) ... 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 206s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 207s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 207s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 207s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 207s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 208s Reading package lists... 208s Reading package lists... 208s Building dependency tree... 208s Reading state information... 208s Calculating upgrade... 208s The following packages have been kept back: 208s curl 209s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 209s Reading package lists... 209s Building dependency tree... 209s Reading state information... 209s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 211s autopkgtest [18:50:15]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 211s autopkgtest [18:50:15]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-purecn 214s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (dsc) [2494 B] 214s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (tar) [5486 kB] 214s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (diff) [6412 B] 214s gpgv: Signature made Fri Dec 1 10:51:26 2023 UTC 214s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 214s gpgv: issuer "tillea@rki.de" 214s gpgv: Can't check signature: No public key 214s dpkg-source: warning: cannot verify inline signature for ./r-bioc-purecn_2.8.1+dfsg-1.dsc: no acceptable signature found 215s autopkgtest [18:50:19]: testing package r-bioc-purecn version 2.8.1+dfsg-1 215s autopkgtest [18:50:19]: build not needed 216s autopkgtest [18:50:20]: test pkg-r-autopkgtest: preparing testbed 218s Reading package lists... 218s Building dependency tree... 218s Reading state information... 218s Starting pkgProblemResolver with broken count: 0 218s Starting 2 pkgProblemResolver with broken count: 0 218s Done 218s The following additional packages will be installed: 218s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl 218s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 218s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 218s g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 218s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 218s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu hdf5-helpers 218s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 218s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 218s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 218s libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 218s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 218s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 218s libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 218s libhdf5-hl-fortran-100 libice6 libicu-dev libio-string-perl libisl23 libitm1 218s libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 218s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 218s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 218s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 218s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 218s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 218s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 218s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 218s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 218s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 218s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libsnappy1v5 libssl-dev 218s libstdc++-13-dev libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 218s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 218s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 218s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 218s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 218s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 218s r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase r-bioc-biocfilecache 218s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 218s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 218s r-bioc-dnacopy r-bioc-genomeinfodb r-bioc-genomeinfodbdata 218s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 218s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-org.hs.eg.db 218s r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 218s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 218s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 218s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 218s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 218s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 218s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 218s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 218s r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-desc 218s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 218s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 218s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 218s r-cran-future r-cran-generics r-cran-getopt r-cran-ggplot2 r-cran-globals 218s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hms 218s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib 218s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 218s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 218s r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix 218s r-cran-matrixstats r-cran-mclust r-cran-memoise r-cran-mgcv r-cran-mime 218s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-optparse r-cran-parallelly 218s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 218s r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits 218s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-pscbs 218s r-cran-purrr r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 218s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 218s r-cran-rematch2 r-cran-restfulr r-cran-rex r-cran-rjson r-cran-rlang 218s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales 218s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 218s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 218s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite 218s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 218s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 218s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 218s xdg-utils zip zlib1g-dev 218s Suggested packages: 218s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 218s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 218s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 218s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 218s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 218s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 218s libboost-context1.83-dev libboost-contract1.83-dev 218s libboost-coroutine1.83-dev libboost-date-time1.83-dev 218s libboost-exception1.83-dev libboost-fiber1.83-dev 218s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 218s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 218s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 218s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 218s libboost-numpy1.83-dev libboost-program-options1.83-dev 218s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 218s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 218s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 218s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 218s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 218s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 218s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 218s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 218s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 218s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 218s librsvg2-bin groff ghc php python ruby libjs-katex 218s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 218s r-base-html texlive-plain-generic texlive-fonts-recommended 218s texlive-fonts-extra texlive-extra-utils texinfo r-bioc-go.db r-cran-runit 218s r-bioc-graph r-cran-princurve r-bioc-all r-bioc-affy r-bioc-deseq2 218s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 218s r-bioc-shortread r-cran-batchtools r-cran-mockery r-cran-webmockr 218s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 218s r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter r-bioc-gviz 218s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-cran-bench 218s r-cran-tinytest r-bioc-limma r-bioc-snpstats r-cran-roxygen2 r-cran-ff 218s r-cran-spelling r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd 218s r-cran-shinyjs r-cran-jpeg r-cran-viridis r-cran-rstudioapi r-cran-rmysql 218s r-cran-lubridate r-cran-magick r-cran-sf r-cran-geometry r-cran-formattable 218s r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units 218s r-cran-vdiffr r-cran-inline r-cran-hmisc r-cran-rvest r-cran-rmpi 218s r-cran-rlecuyer r-cran-here r-cran-plm r-cran-zoo debhelper ghostscript gv 218s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 218s texlive-latex-base-doc wp2latex 218s Recommended packages: 218s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 218s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 218s r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect 218s r-cran-testit r-cran-tufte r-cran-webshot r-cran-thematic r-cran-cliapp 218s r-cran-mockery r-cran-whoami r-cran-dt r-cran-bench r-cran-decor 218s r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-xts r-cran-nanotime 218s r-cran-zoo r-cran-rpostgresql r-cran-gh r-cran-broom r-cran-rmysql 218s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-rhpcblasctl r-cran-r.rsp 218s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 218s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 218s r-cran-svglite r-cran-vdiffr r-cran-cairo r-cran-jpeg r-cran-readr 218s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 218s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 218s r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr r-cran-webfakes 218s r-cran-pingr r-cran-foreign r-cran-nnet r-cran-runit r-cran-usethis 218s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-rvest r-cran-dichromat 218s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 218s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 218s x11-xserver-utils 218s The following packages will be REMOVED: 218s libcurl4 libpsl5 218s The following NEW packages will be installed: 218s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 218s cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config 218s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 218s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 218s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 218s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 218s gfortran-s390x-linux-gnu hdf5-helpers icu-devtools javascript-common 218s libaec-dev libaec0 libasan8 libatomic1 libbibtex-parser-perl libblas-dev 218s libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin 218s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 218s libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev 218s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 218s libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 218s libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libice6 libicu-dev 218s libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 218s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 218s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 218s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 218s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 218s libjs-popper.js libjs-prettify libjs-sifter.js 218s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 218s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 218s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 218s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 218s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 218s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libsnappy1v5 libssl-dev 218s libstdc++-13-dev libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 218s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 218s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 218s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 218s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 218s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 218s r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase r-bioc-biocfilecache 218s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 218s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 218s r-bioc-dnacopy r-bioc-genomeinfodb r-bioc-genomeinfodbdata 218s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 218s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-org.hs.eg.db 218s r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 218s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 218s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 218s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 218s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 218s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 218s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 218s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 218s r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-desc 218s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 218s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 218s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 218s r-cran-future r-cran-generics r-cran-getopt r-cran-ggplot2 r-cran-globals 218s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hms 218s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib 218s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 218s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 218s r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix 218s r-cran-matrixstats r-cran-mclust r-cran-memoise r-cran-mgcv r-cran-mime 218s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-optparse r-cran-parallelly 218s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 218s r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits 218s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-pscbs 218s r-cran-purrr r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 218s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 218s r-cran-rematch2 r-cran-restfulr r-cran-rex r-cran-rjson r-cran-rlang 218s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales 218s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 218s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 218s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite 218s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 218s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 218s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 218s xdg-utils zip zlib1g-dev 218s The following packages will be upgraded: 218s curl 218s 1 upgraded, 342 newly installed, 2 to remove and 0 not upgraded. 218s Need to get 561 MB/561 MB of archives. 218s After this operation, 1896 MB of additional disk space will be used. 218s Get:1 /tmp/autopkgtest.dhUgXk/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [808 B] 219s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB] 219s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB] 219s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB] 219s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 219s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 219s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 219s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 220s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 220s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 220s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 220s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 220s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 220s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 221s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 221s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 221s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 221s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 221s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 221s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 221s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 221s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 221s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 221s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 221s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 222s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 222s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 222s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 222s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 222s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 222s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 222s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 222s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 222s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 222s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 222s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 222s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 222s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 222s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 222s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 222s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 222s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 222s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 223s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 223s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 223s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 223s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 223s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 223s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 223s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 223s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 223s Get:52 http://ftpmaster.internal/ubuntu noble/universe s390x hdf5-helpers s390x 1.10.10+repack-3ubuntu1 [15.6 kB] 223s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 223s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 223s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x libaec0 s390x 1.1.2-1 [25.7 kB] 223s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 223s Get:57 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 223s Get:58 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 223s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 223s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 223s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libsnappy1v5 s390x 1.1.10-1 [30.0 kB] 223s Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x libblosc1 s390x 1.21.5+ds-1 [27.3 kB] 223s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 223s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 223s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 223s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 223s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 223s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 223s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 223s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 223s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4-openssl-dev s390x 8.5.0-2ubuntu7 [473 kB] 223s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 223s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 223s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 223s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 223s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x libsz2 s390x 1.1.2-1 [5346 B] 223s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-103-1 s390x 1.10.10+repack-3ubuntu1 [1425 kB] 223s Get:78 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-cpp-103-1 s390x 1.10.10+repack-3ubuntu1 [121 kB] 223s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-fortran-102 s390x 1.10.10+repack-3ubuntu1 [91.6 kB] 223s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-100 s390x 1.10.10+repack-3ubuntu1 [57.5 kB] 223s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-fortran-100 s390x 1.10.10+repack-3ubuntu1 [31.6 kB] 223s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-cpp-100 s390x 1.10.10+repack-3ubuntu1 [10.8 kB] 224s Get:83 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 224s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 224s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 224s Get:86 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 224s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 224s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 224s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x libaec-dev s390x 1.1.2-1 [23.1 kB] 224s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl-dev s390x 3.0.13-0ubuntu1 [2132 kB] 224s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-dev s390x 1.10.10+repack-3ubuntu1 [2898 kB] 224s Get:92 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 224s Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 224s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 224s Get:95 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 224s Get:96 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 224s Get:97 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 224s Get:98 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 224s Get:99 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 224s Get:100 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 224s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 224s Get:102 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 224s Get:103 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 224s Get:104 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 224s Get:105 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 224s Get:106 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 224s Get:107 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 224s Get:108 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 224s Get:109 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 224s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9 [66.4 kB] 224s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 225s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 225s Get:113 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 225s Get:114 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 225s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 225s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 225s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 225s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 225s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 225s Get:120 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 225s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 225s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 225s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 225s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 225s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 225s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 225s Get:127 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 225s Get:128 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 225s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9 [41.6 kB] 225s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 225s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 225s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 225s Get:133 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9 [65.0 kB] 225s Get:134 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 225s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 225s Get:136 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9 [132 kB] 225s Get:137 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 225s Get:138 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 225s Get:139 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 225s Get:140 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 225s Get:141 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 225s Get:142 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 225s Get:143 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 225s Get:144 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3 [49.3 kB] 225s Get:145 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 225s Get:146 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1 [186 kB] 225s Get:147 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 225s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13 s390x 0.13.72+dfsg.1-1.1 [26.1 kB] 225s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 225s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 225s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 225s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 225s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 227s Get:154 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 227s Get:155 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 227s Get:156 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 227s Get:157 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 227s Get:158 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 227s Get:159 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 227s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 228s Get:161 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 228s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 228s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 228s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 228s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 229s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 229s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 229s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 229s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 229s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 229s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 229s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 229s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 229s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 229s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 229s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 229s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 229s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 229s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 229s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 229s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 229s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 229s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 229s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB] 229s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 229s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 229s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 229s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 229s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB] 229s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 229s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 229s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB] 229s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 229s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 229s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 229s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1 [794 kB] 229s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 230s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 230s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 230s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 231s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 231s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 231s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 231s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r.oo all 1.26.0-1 [955 kB] 231s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r.utils all 2.12.3-1 [1386 kB] 232s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 232s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-aroma.light all 3.32.0-1 [576 kB] 232s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 232s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 232s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 232s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 232s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 232s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 232s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 232s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 232s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 232s Get:217 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 232s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 232s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 232s Get:220 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 232s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 232s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 232s Get:223 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 232s Get:224 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 232s Get:225 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 232s Get:226 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 232s Get:227 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 232s Get:228 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 232s Get:229 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 232s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 232s Get:231 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 232s Get:232 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 232s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 232s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 232s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 232s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 232s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 232s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 232s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 232s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 232s Get:241 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 232s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 232s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 232s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 232s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 232s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 232s Get:247 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 233s Get:248 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 233s Get:249 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 233s Get:250 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 233s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 233s Get:252 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 233s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 233s Get:254 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 233s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 233s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1 [519 kB] 233s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 233s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 233s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 233s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 233s Get:261 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 233s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 233s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 233s Get:264 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 233s Get:265 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 233s Get:266 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 233s Get:267 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9 [9353 kB] 234s Get:268 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 234s Get:269 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 234s Get:270 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 238s Get:271 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 238s Get:272 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 238s Get:273 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 238s Get:274 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 238s Get:275 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 238s Get:276 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 238s Get:277 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 238s Get:278 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 238s Get:279 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-1 [1410 kB] 238s Get:280 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1build1 [3700 kB] 238s Get:281 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 238s Get:282 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 238s Get:283 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 238s Get:284 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 238s Get:285 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 238s Get:286 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 239s Get:287 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 239s Get:288 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 239s Get:289 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 239s Get:290 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 239s Get:291 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 239s Get:292 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 239s Get:293 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-bsgenome all 1.70.2-1 [6975 kB] 239s Get:294 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-dnacopy s390x 1.76.0-1 [384 kB] 239s Get:295 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 239s Get:296 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 242s Get:297 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-variantannotation s390x 1.48.1-1 [3572 kB] 242s Get:298 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 242s Get:299 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-data.table s390x 1.14.10+dfsg-1 [1880 kB] 242s Get:300 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 242s Get:301 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB] 242s Get:302 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 242s Get:303 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-nlme s390x 3.1.164-1 [2268 kB] 243s Get:304 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 243s Get:305 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-farver s390x 2.1.1-1 [1347 kB] 243s Get:306 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB] 243s Get:307 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-colorspace s390x 2.1-0+dfsg-1 [1540 kB] 243s Get:308 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-munsell all 0.5.0-2build1 [208 kB] 243s Get:309 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB] 243s Get:310 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-scales all 1.3.0-1 [603 kB] 243s Get:311 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 244s Get:312 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gridextra all 2.3-3build1 [1024 kB] 244s Get:313 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vgam s390x 1.1-9-1 [7336 kB] 244s Get:314 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mclust s390x 6.0.1-1 [3936 kB] 244s Get:315 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhdf5lib s390x 1.24.2+dfsg-1 [96.1 kB] 244s Get:316 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhdf5filters s390x 1.14.1+dfsg-3 [124 kB] 244s Get:317 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhdf5 s390x 2.46.1+dfsg-1 [814 kB] 244s Get:318 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-purecn all 2.8.1+dfsg-1 [6042 kB] 244s Get:319 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-brio s390x 1.1.4-1 [37.8 kB] 244s Get:320 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ps s390x 1.7.6-1 [313 kB] 244s Get:321 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-processx s390x 3.8.3-1 [364 kB] 244s Get:322 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-callr all 3.7.3-2 [425 kB] 244s Get:323 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lazyeval s390x 0.2.2-1build1 [143 kB] 244s Get:324 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rex all 1.2.1-1 [129 kB] 244s Get:325 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-covr s390x 3.6.4+dfsg-1 [302 kB] 245s Get:326 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-desc all 1.4.3-1 [359 kB] 245s Get:327 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB] 245s Get:328 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-globals all 0.16.2-1 [117 kB] 245s Get:329 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 245s Get:330 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-parallelly s390x 1.37.1-1 [365 kB] 245s Get:331 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-future all 1.33.1+dfsg-1 [634 kB] 245s Get:332 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-getopt all 1.20.4-1 [38.4 kB] 245s Get:333 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-markdown all 1.12+dfsg-1 [179 kB] 245s Get:334 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-optparse all 1.7.4-1 [81.6 kB] 245s Get:335 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgbuild all 1.4.3-1 [209 kB] 245s Get:336 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rprojroot all 2.0.4-1 [124 kB] 245s Get:337 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgload all 1.3.4-1 [207 kB] 245s Get:338 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB] 245s Get:339 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r.cache all 0.16.0-1 [113 kB] 245s Get:340 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pscbs all 0.66.0-2 [4345 kB] 245s Get:341 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 245s Get:342 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-waldo all 0.5.2-1build1 [120 kB] 245s Get:343 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-testthat s390x 3.2.1-1 [1688 kB] 246s Preconfiguring packages ... 246s Fetched 561 MB in 27s (21.1 MB/s) 246s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 246s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ... 246s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 246s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested: 246s wget depends on libpsl5 (>= 0.16.0). 246s libcurl4:s390x depends on libpsl5 (>= 0.16.0). 246s libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0). 246s 246s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 246s Removing libpsl5:s390x (0.21.2-1build1) ... 246s Selecting previously unselected package libpsl5t64:s390x. 246s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52168 files and directories currently installed.) 246s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ... 246s Unpacking libpsl5t64:s390x (0.21.2-1.1) ... 246s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested: 246s s390-tools depends on libcurl4 (>= 7.16.2). 246s 246s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52174 files and directories currently installed.) 246s Removing libcurl4:s390x (8.5.0-2ubuntu2) ... 246s Selecting previously unselected package libcurl4t64:s390x. 246s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52169 files and directories currently installed.) 246s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ... 246s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ... 246s Selecting previously unselected package libc-dev-bin. 246s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 246s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 246s Selecting previously unselected package linux-libc-dev:s390x. 246s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ... 246s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 246s Selecting previously unselected package libcrypt-dev:s390x. 246s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 246s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 247s Selecting previously unselected package libtirpc-dev:s390x. 247s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 247s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 247s Selecting previously unselected package libnsl-dev:s390x. 247s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ... 247s Unpacking libnsl-dev:s390x (1.3.0-3) ... 247s Selecting previously unselected package rpcsvc-proto. 247s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 247s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 247s Selecting previously unselected package libc6-dev:s390x. 247s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ... 247s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 247s Selecting previously unselected package libisl23:s390x. 247s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ... 247s Unpacking libisl23:s390x (0.26-3) ... 247s Selecting previously unselected package libmpc3:s390x. 247s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ... 247s Unpacking libmpc3:s390x (1.3.1-1) ... 247s Selecting previously unselected package cpp-13-s390x-linux-gnu. 247s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 247s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 247s Selecting previously unselected package cpp-13. 247s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 247s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 247s Selecting previously unselected package cpp-s390x-linux-gnu. 247s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 247s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 247s Selecting previously unselected package cpp. 247s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 247s Unpacking cpp (4:13.2.0-7ubuntu1) ... 247s Selecting previously unselected package libcc1-0:s390x. 247s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 247s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 247s Selecting previously unselected package libgomp1:s390x. 247s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 247s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 247s Selecting previously unselected package libitm1:s390x. 247s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ... 247s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 247s Selecting previously unselected package libatomic1:s390x. 247s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 247s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 247s Selecting previously unselected package libasan8:s390x. 247s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ... 247s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 247s Selecting previously unselected package libubsan1:s390x. 247s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 247s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 247s Selecting previously unselected package libgcc-13-dev:s390x. 247s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 247s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 247s Selecting previously unselected package gcc-13-s390x-linux-gnu. 247s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 247s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 248s Selecting previously unselected package gcc-13. 248s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 248s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 248s Selecting previously unselected package gcc-s390x-linux-gnu. 248s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 248s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 248s Selecting previously unselected package gcc. 248s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 248s Unpacking gcc (4:13.2.0-7ubuntu1) ... 248s Selecting previously unselected package libstdc++-13-dev:s390x. 248s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 248s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 248s Selecting previously unselected package g++-13-s390x-linux-gnu. 248s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 248s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 248s Selecting previously unselected package g++-13. 248s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ... 248s Unpacking g++-13 (13.2.0-17ubuntu2) ... 248s Selecting previously unselected package g++-s390x-linux-gnu. 248s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 248s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 248s Selecting previously unselected package g++. 248s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 248s Unpacking g++ (4:13.2.0-7ubuntu1) ... 248s Selecting previously unselected package build-essential. 248s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ... 248s Unpacking build-essential (12.10ubuntu1) ... 248s Selecting previously unselected package dctrl-tools. 248s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ... 248s Unpacking dctrl-tools (2.24-3build2) ... 248s Selecting previously unselected package libfreetype6:s390x. 248s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 248s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 248s Selecting previously unselected package fonts-dejavu-mono. 248s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 248s Unpacking fonts-dejavu-mono (2.37-8) ... 248s Selecting previously unselected package fonts-dejavu-core. 248s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 248s Unpacking fonts-dejavu-core (2.37-8) ... 248s Selecting previously unselected package fontconfig-config. 248s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 248s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 248s Selecting previously unselected package libfontconfig1:s390x. 248s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 248s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 248s Selecting previously unselected package fontconfig. 248s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 248s Unpacking fontconfig (2.15.0-1ubuntu1) ... 248s Selecting previously unselected package fonts-font-awesome. 248s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 248s Unpacking fonts-font-awesome 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libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 249s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 249s Preparing to unpack .../044-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 249s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 249s Selecting previously unselected package gfortran-13. 249s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 249s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 249s Selecting previously unselected package gfortran-s390x-linux-gnu. 249s Preparing to unpack .../046-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 249s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 249s Selecting previously unselected package gfortran. 249s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 249s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 249s Selecting previously unselected package hdf5-helpers. 249s Preparing to unpack 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liblatex-tounicode-perl (0.54-2) ... 249s Selecting previously unselected package libbibtex-parser-perl. 249s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 249s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 249s Selecting previously unselected package libblas3:s390x. 249s Preparing to unpack .../055-libblas3_3.12.0-3_s390x.deb ... 249s Unpacking libblas3:s390x (3.12.0-3) ... 249s Selecting previously unselected package libblas-dev:s390x. 249s Preparing to unpack .../056-libblas-dev_3.12.0-3_s390x.deb ... 249s Unpacking libblas-dev:s390x (3.12.0-3) ... 249s Selecting previously unselected package libsnappy1v5:s390x. 249s Preparing to unpack .../057-libsnappy1v5_1.1.10-1_s390x.deb ... 249s Unpacking libsnappy1v5:s390x (1.1.10-1) ... 249s Selecting previously unselected package libblosc1:s390x. 249s Preparing to unpack .../058-libblosc1_1.21.5+ds-1_s390x.deb ... 249s Unpacking libblosc1:s390x (1.21.5+ds-1) ... 249s Selecting previously unselected package libboost1.83-dev:s390x. 249s Preparing to unpack .../059-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 249s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 251s Selecting previously unselected package libboost-dev:s390x. 251s Preparing to unpack .../060-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 251s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 251s Selecting previously unselected package libbz2-dev:s390x. 251s Preparing to unpack .../061-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 251s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 251s Selecting previously unselected package libpixman-1-0:s390x. 251s Preparing to unpack .../062-libpixman-1-0_0.42.2-1_s390x.deb ... 251s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 251s Selecting previously unselected package libxcb-render0:s390x. 251s Preparing to unpack .../063-libxcb-render0_1.15-1_s390x.deb ... 251s Unpacking libxcb-render0:s390x (1.15-1) ... 251s Selecting previously unselected package libxcb-shm0:s390x. 251s Preparing to unpack .../064-libxcb-shm0_1.15-1_s390x.deb ... 251s Unpacking libxcb-shm0:s390x (1.15-1) ... 251s Selecting previously unselected package libxrender1:s390x. 251s Preparing to unpack .../065-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 251s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 251s Selecting previously unselected package libcairo2:s390x. 251s Preparing to unpack .../066-libcairo2_1.18.0-1_s390x.deb ... 251s Unpacking libcairo2:s390x (1.18.0-1) ... 251s Selecting previously unselected package libcurl4-openssl-dev:s390x. 251s Preparing to unpack .../067-libcurl4-openssl-dev_8.5.0-2ubuntu7_s390x.deb ... 251s Unpacking libcurl4-openssl-dev:s390x (8.5.0-2ubuntu7) ... 251s Selecting previously unselected package libdatrie1:s390x. 251s Preparing to unpack .../068-libdatrie1_0.2.13-3_s390x.deb ... 251s Unpacking libdatrie1:s390x (0.2.13-3) ... 251s Selecting previously unselected package libdeflate0:s390x. 251s Preparing to unpack .../069-libdeflate0_1.19-1_s390x.deb ... 251s Unpacking libdeflate0:s390x (1.19-1) ... 251s Selecting previously unselected package libgraphite2-3:s390x. 251s Preparing to unpack .../070-libgraphite2-3_1.3.14-2_s390x.deb ... 251s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 252s Selecting previously unselected package libharfbuzz0b:s390x. 252s Preparing to unpack .../071-libharfbuzz0b_8.3.0-2_s390x.deb ... 252s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 252s Selecting previously unselected package libsz2:s390x. 252s Preparing to unpack .../072-libsz2_1.1.2-1_s390x.deb ... 252s Unpacking libsz2:s390x (1.1.2-1) ... 252s Selecting previously unselected package libhdf5-103-1:s390x. 252s Preparing to unpack .../073-libhdf5-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 252s Unpacking libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 252s Selecting previously unselected package libhdf5-cpp-103-1:s390x. 252s Preparing to unpack .../074-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 252s Unpacking libhdf5-cpp-103-1:s390x (1.10.10+repack-3ubuntu1) ... 252s Selecting previously unselected package libhdf5-fortran-102:s390x. 252s Preparing to unpack .../075-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_s390x.deb ... 252s Unpacking libhdf5-fortran-102:s390x (1.10.10+repack-3ubuntu1) ... 252s Selecting previously unselected package libhdf5-hl-100:s390x. 252s Preparing to unpack .../076-libhdf5-hl-100_1.10.10+repack-3ubuntu1_s390x.deb ... 252s Unpacking libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 252s Selecting previously unselected package libhdf5-hl-fortran-100:s390x. 252s Preparing to unpack .../077-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_s390x.deb ... 252s Unpacking libhdf5-hl-fortran-100:s390x (1.10.10+repack-3ubuntu1) ... 252s Selecting previously unselected package libhdf5-hl-cpp-100:s390x. 252s Preparing to unpack .../078-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_s390x.deb ... 252s Unpacking libhdf5-hl-cpp-100:s390x (1.10.10+repack-3ubuntu1) ... 252s Selecting previously unselected package zlib1g-dev:s390x. 252s Preparing to unpack .../079-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 252s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 252s Selecting previously unselected package libjpeg-turbo8:s390x. 252s Preparing to unpack .../080-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 252s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 252s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 252s Preparing to unpack .../081-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 252s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 252s Selecting previously unselected package libjpeg8:s390x. 252s Preparing to unpack .../082-libjpeg8_8c-2ubuntu11_s390x.deb ... 252s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 252s Selecting previously unselected package libjpeg8-dev:s390x. 252s Preparing to unpack .../083-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 252s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 252s Selecting previously unselected package libjpeg-dev:s390x. 252s Preparing to unpack .../084-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 252s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 252s Selecting previously unselected package libaec-dev:s390x. 252s Preparing to unpack .../085-libaec-dev_1.1.2-1_s390x.deb ... 252s Unpacking libaec-dev:s390x (1.1.2-1) ... 252s Selecting previously unselected package libssl-dev:s390x. 252s Preparing to unpack .../086-libssl-dev_3.0.13-0ubuntu1_s390x.deb ... 252s Unpacking libssl-dev:s390x (3.0.13-0ubuntu1) ... 252s Selecting previously unselected package libhdf5-dev. 252s Preparing to unpack .../087-libhdf5-dev_1.10.10+repack-3ubuntu1_s390x.deb ... 252s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 252s Selecting previously unselected package x11-common. 252s Preparing to unpack .../088-x11-common_1%3a7.7+23ubuntu2_all.deb ... 252s Unpacking x11-common (1:7.7+23ubuntu2) ... 252s Selecting previously unselected package libice6:s390x. 252s Preparing to unpack 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previously unselected package libjs-microplugin.js. 253s Preparing to unpack .../100-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 253s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 253s Selecting previously unselected package libjs-jquery-selectize.js. 253s Preparing to unpack .../101-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 253s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 253s Selecting previously unselected package libjs-jquery-ui. 253s Preparing to unpack .../102-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 253s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 253s Selecting previously unselected package libjs-json. 253s Preparing to unpack .../103-libjs-json_0~20221030+~1.0.8-1_all.deb ... 253s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 253s Selecting previously unselected package libjs-lunr. 253s Preparing to unpack .../104-libjs-lunr_2.3.9~dfsg-2_all.deb ... 253s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 253s Selecting previously unselected package libjs-prettify. 253s Preparing to unpack .../105-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 253s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 253s Selecting previously unselected package libkpathsea6:s390x. 253s Preparing to unpack .../106-libkpathsea6_2023.20230311.66589-9_s390x.deb ... 253s Unpacking libkpathsea6:s390x (2023.20230311.66589-9) ... 253s Selecting previously unselected package liblapack3:s390x. 253s Preparing to unpack .../107-liblapack3_3.12.0-3_s390x.deb ... 253s Unpacking liblapack3:s390x (3.12.0-3) ... 253s Selecting previously unselected package liblapack-dev:s390x. 253s Preparing to unpack .../108-liblapack-dev_3.12.0-3_s390x.deb ... 253s Unpacking liblapack-dev:s390x (3.12.0-3) ... 253s Selecting previously unselected package liblua5.4-0:s390x. 253s Preparing to unpack .../109-liblua5.4-0_5.4.6-3_s390x.deb ... 253s Unpacking liblua5.4-0:s390x (5.4.6-3) ... 253s Selecting previously unselected package libncurses-dev:s390x. 253s Preparing to unpack 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253s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ... 253s Selecting previously unselected package libpcre2-dev:s390x. 253s Preparing to unpack .../121-libpcre2-dev_10.42-4ubuntu1_s390x.deb ... 253s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ... 253s Selecting previously unselected package libpkgconf3:s390x. 253s Preparing to unpack .../122-libpkgconf3_1.8.1-2_s390x.deb ... 253s Unpacking libpkgconf3:s390x (1.8.1-2) ... 253s Selecting previously unselected package libpng-dev:s390x. 253s Preparing to unpack .../123-libpng-dev_1.6.43-1_s390x.deb ... 253s Unpacking libpng-dev:s390x (1.6.43-1) ... 253s Selecting previously unselected package libpotrace0:s390x. 253s Preparing to unpack .../124-libpotrace0_1.16-2_s390x.deb ... 253s Unpacking libpotrace0:s390x (1.16-2) ... 253s Selecting previously unselected package libptexenc1:s390x. 253s Preparing to unpack .../125-libptexenc1_2023.20230311.66589-9_s390x.deb ... 253s Unpacking libptexenc1:s390x (2023.20230311.66589-9) ... 254s Selecting previously unselected package libreadline-dev:s390x. 254s Preparing to unpack .../126-libreadline-dev_8.2-3_s390x.deb ... 254s Unpacking libreadline-dev:s390x (8.2-3) ... 254s Selecting previously unselected package libsharpyuv0:s390x. 254s Preparing to unpack .../127-libsharpyuv0_1.3.2-0.4_s390x.deb ... 254s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 254s Selecting previously unselected package libsm6:s390x. 254s Preparing to unpack .../128-libsm6_2%3a1.2.3-1build2_s390x.deb ... 254s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 254s Selecting previously unselected package libsynctex2:s390x. 254s Preparing to unpack .../129-libsynctex2_2023.20230311.66589-9_s390x.deb ... 254s Unpacking libsynctex2:s390x (2023.20230311.66589-9) ... 254s Selecting previously unselected package libtcl8.6:s390x. 254s Preparing to unpack .../130-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 254s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 254s Selecting previously unselected package libteckit0:s390x. 254s Preparing to unpack .../131-libteckit0_2.5.12+ds1-1_s390x.deb ... 254s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 254s Selecting previously unselected package libtexlua53-5:s390x. 254s Preparing to unpack .../132-libtexlua53-5_2023.20230311.66589-9_s390x.deb ... 254s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9) ... 254s Selecting previously unselected package libjbig0:s390x. 254s Preparing to unpack .../133-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 254s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 254s Selecting previously unselected package libwebp7:s390x. 254s Preparing to unpack .../134-libwebp7_1.3.2-0.4_s390x.deb ... 254s Unpacking libwebp7:s390x (1.3.2-0.4) ... 254s Selecting previously unselected package libtiff6:s390x. 254s Preparing to unpack .../135-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 254s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 254s Selecting previously unselected package libxft2:s390x. 254s Preparing to unpack .../136-libxft2_2.3.6-1_s390x.deb ... 254s Unpacking libxft2:s390x (2.3.6-1) ... 254s Selecting previously unselected package libxss1:s390x. 254s Preparing to unpack .../137-libxss1_1%3a1.2.3-1build2_s390x.deb ... 254s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 254s Selecting previously unselected package libtk8.6:s390x. 254s Preparing to unpack .../138-libtk8.6_8.6.13-2_s390x.deb ... 254s Unpacking libtk8.6:s390x (8.6.13-2) ... 254s Selecting previously unselected package libxt6:s390x. 254s Preparing to unpack .../139-libxt6_1%3a1.2.1-1.1_s390x.deb ... 254s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 254s Selecting previously unselected package libxmu6:s390x. 254s Preparing to unpack .../140-libxmu6_2%3a1.1.3-3_s390x.deb ... 254s Unpacking libxmu6:s390x (2:1.1.3-3) ... 254s Selecting previously unselected package libxpm4:s390x. 254s Preparing to unpack .../141-libxpm4_1%3a3.5.17-1_s390x.deb ... 254s Unpacking libxpm4:s390x (1:3.5.17-1) ... 254s Selecting previously unselected package libxaw7:s390x. 254s Preparing to unpack .../142-libxaw7_2%3a1.0.14-1_s390x.deb ... 254s Unpacking libxaw7:s390x (2:1.0.14-1) ... 254s Selecting previously unselected package libxi6:s390x. 254s Preparing to unpack .../143-libxi6_2%3a1.8.1-1_s390x.deb ... 254s Unpacking libxi6:s390x (2:1.8.1-1) ... 254s Selecting previously unselected package libzzip-0-13:s390x. 254s Preparing to unpack .../144-libzzip-0-13_0.13.72+dfsg.1-1.1_s390x.deb ... 254s Unpacking libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 254s Selecting previously unselected package node-bootstrap-sass. 254s Preparing to unpack .../145-node-bootstrap-sass_3.4.3-2_all.deb ... 254s Unpacking node-bootstrap-sass (3.4.3-2) ... 254s Selecting previously unselected package node-html5shiv. 254s Preparing to unpack .../146-node-html5shiv_3.7.3+dfsg-5_all.deb ... 254s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 254s Selecting previously unselected package node-normalize.css. 254s Preparing to unpack .../147-node-normalize.css_8.0.1-5_all.deb ... 254s Unpacking node-normalize.css (8.0.1-5) ... 254s Selecting previously unselected package pandoc-data. 254s Preparing to unpack .../148-pandoc-data_3.1.3-1_all.deb ... 254s Unpacking pandoc-data (3.1.3-1) ... 254s Selecting previously unselected package pandoc. 254s Preparing to unpack .../149-pandoc_3.1.3+ds-2_s390x.deb ... 254s Unpacking pandoc (3.1.3+ds-2) ... 256s Selecting previously unselected package pkgconf-bin. 256s Preparing to unpack .../150-pkgconf-bin_1.8.1-2_s390x.deb ... 256s Unpacking pkgconf-bin (1.8.1-2) ... 256s Selecting previously unselected package pkgconf:s390x. 256s Preparing to unpack .../151-pkgconf_1.8.1-2_s390x.deb ... 256s Unpacking pkgconf:s390x (1.8.1-2) ... 256s Selecting previously unselected package pkg-config:s390x. 256s Preparing to unpack .../152-pkg-config_1.8.1-2_s390x.deb ... 256s Unpacking pkg-config:s390x (1.8.1-2) ... 256s Selecting previously unselected package zip. 256s Preparing to unpack .../153-zip_3.0-13_s390x.deb ... 256s Unpacking zip (3.0-13) ... 256s Selecting previously unselected package unzip. 256s Preparing to unpack .../154-unzip_6.0-28ubuntu3_s390x.deb ... 256s Unpacking unzip (6.0-28ubuntu3) ... 256s Selecting previously unselected package xdg-utils. 256s Preparing to unpack .../155-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 256s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 256s Selecting previously unselected package r-base-core. 256s Preparing to unpack .../156-r-base-core_4.3.2-1build1_s390x.deb ... 256s Unpacking r-base-core (4.3.2-1build1) ... 256s Selecting previously unselected package liblzma-dev:s390x. 256s Preparing to unpack .../157-liblzma-dev_5.4.5-0.3_s390x.deb ... 256s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 256s Selecting previously unselected package r-base-dev. 256s Preparing to unpack .../158-r-base-dev_4.3.2-1build1_all.deb ... 256s Unpacking r-base-dev (4.3.2-1build1) ... 256s Selecting previously unselected package pkg-r-autopkgtest. 256s Preparing to unpack .../159-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 256s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 256s Selecting previously unselected package r-bioc-biocgenerics. 256s Preparing to unpack .../160-r-bioc-biocgenerics_0.48.1-2_all.deb ... 256s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 256s Selecting previously unselected package r-bioc-biobase. 256s Preparing to unpack .../161-r-bioc-biobase_2.62.0-1_s390x.deb ... 256s Unpacking r-bioc-biobase (2.62.0-1) ... 256s Selecting previously unselected package r-bioc-s4vectors. 256s Preparing to unpack .../162-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 256s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 256s Selecting previously unselected package r-bioc-iranges. 256s Preparing to unpack .../163-r-bioc-iranges_2.36.0-1_s390x.deb ... 256s Unpacking r-bioc-iranges (2.36.0-1) ... 256s Selecting previously unselected package r-cran-dbi. 256s Preparing to unpack .../164-r-cran-dbi_1.2.2-1_all.deb ... 256s Unpacking r-cran-dbi (1.2.2-1) ... 256s Selecting previously unselected package r-cran-bit. 256s Preparing to unpack .../165-r-cran-bit_4.0.5-1_s390x.deb ... 256s Unpacking r-cran-bit (4.0.5-1) ... 256s Selecting previously unselected package r-cran-bit64. 256s Preparing to unpack .../166-r-cran-bit64_4.0.5-1_s390x.deb ... 256s Unpacking r-cran-bit64 (4.0.5-1) ... 256s Selecting previously unselected package r-cran-rlang. 256s Preparing to unpack .../167-r-cran-rlang_1.1.3-1_s390x.deb ... 256s Unpacking r-cran-rlang (1.1.3-1) ... 256s Selecting previously unselected package r-cran-cli. 256s Preparing to unpack .../168-r-cran-cli_3.6.2-1_s390x.deb ... 256s Unpacking r-cran-cli (3.6.2-1) ... 256s Selecting previously unselected package r-cran-glue. 257s Preparing to unpack .../169-r-cran-glue_1.7.0-1_s390x.deb ... 257s Unpacking r-cran-glue (1.7.0-1) ... 257s Selecting previously unselected package r-cran-lifecycle. 257s Preparing to unpack .../170-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 257s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 257s Selecting previously unselected package r-cran-vctrs. 257s Preparing to unpack .../171-r-cran-vctrs_0.6.5-1_s390x.deb ... 257s Unpacking r-cran-vctrs (0.6.5-1) ... 257s Selecting previously unselected package r-cran-blob. 257s Preparing to unpack .../172-r-cran-blob_1.2.4-1_all.deb ... 257s Unpacking r-cran-blob (1.2.4-1) ... 257s Selecting previously unselected package r-cran-fastmap. 257s Preparing to unpack .../173-r-cran-fastmap_1.1.1-1_s390x.deb ... 257s Unpacking r-cran-fastmap (1.1.1-1) ... 257s Selecting previously unselected package r-cran-cachem. 257s Preparing to unpack .../174-r-cran-cachem_1.0.8-1_s390x.deb ... 257s Unpacking r-cran-cachem (1.0.8-1) ... 257s Selecting previously unselected package r-cran-memoise. 257s Preparing to unpack .../175-r-cran-memoise_2.0.1-1_all.deb ... 257s Unpacking r-cran-memoise (2.0.1-1) ... 257s Selecting previously unselected package r-cran-pkgconfig. 257s Preparing to unpack .../176-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 257s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 257s Selecting previously unselected package r-cran-plogr. 257s Preparing to unpack .../177-r-cran-plogr_0.2.0-3build1_all.deb ... 257s Unpacking r-cran-plogr (0.2.0-3build1) ... 257s Selecting previously unselected package r-cran-cpp11. 257s Preparing to unpack .../178-r-cran-cpp11_0.4.7-1_all.deb ... 257s Unpacking r-cran-cpp11 (0.4.7-1) ... 257s Selecting previously unselected package r-cran-rsqlite. 257s Preparing to unpack .../179-r-cran-rsqlite_2.3.4-1_s390x.deb ... 257s Unpacking r-cran-rsqlite (2.3.4-1) ... 257s Selecting previously unselected package r-cran-curl. 257s Preparing to unpack .../180-r-cran-curl_5.2.0+dfsg-1_s390x.deb ... 257s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 257s Selecting previously unselected package r-cran-jsonlite. 257s Preparing to unpack .../181-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 257s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 257s Selecting previously unselected package r-cran-mime. 257s Preparing to unpack .../182-r-cran-mime_0.12-1_s390x.deb ... 257s Unpacking r-cran-mime (0.12-1) ... 257s Selecting previously unselected package r-cran-sys. 257s Preparing to unpack .../183-r-cran-sys_3.4.2-1_s390x.deb ... 257s Unpacking r-cran-sys (3.4.2-1) ... 257s Selecting previously unselected package r-cran-askpass. 257s Preparing to unpack .../184-r-cran-askpass_1.2.0-1_s390x.deb ... 257s Unpacking r-cran-askpass (1.2.0-1) ... 257s Selecting previously unselected package r-cran-openssl. 257s Preparing to unpack .../185-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ... 257s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 257s Selecting previously unselected package r-cran-r6. 257s Preparing to unpack .../186-r-cran-r6_2.5.1-1_all.deb ... 257s Unpacking r-cran-r6 (2.5.1-1) ... 257s Selecting previously unselected package r-cran-httr. 257s Preparing to unpack .../187-r-cran-httr_1.4.7+dfsg-1_all.deb ... 257s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 257s Selecting previously unselected package r-cran-png. 257s Preparing to unpack .../188-r-cran-png_0.1-8-1_s390x.deb ... 257s Unpacking r-cran-png (0.1-8-1) ... 257s Selecting previously unselected package r-bioc-zlibbioc. 257s Preparing to unpack .../189-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 257s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 257s Selecting previously unselected package r-bioc-xvector. 257s Preparing to unpack .../190-r-bioc-xvector_0.42.0-1_s390x.deb ... 257s Unpacking r-bioc-xvector (0.42.0-1) ... 257s Selecting previously unselected package r-cran-bitops. 257s Preparing to unpack .../191-r-cran-bitops_1.0-7-1_s390x.deb ... 257s Unpacking r-cran-bitops (1.0-7-1) ... 257s Selecting previously unselected package r-cran-rcurl. 257s Preparing to unpack .../192-r-cran-rcurl_1.98-1.14+dfsg-1_s390x.deb ... 257s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 257s Selecting previously unselected package r-bioc-genomeinfodbdata. 257s Preparing to unpack .../193-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 257s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 257s Selecting previously unselected package r-bioc-genomeinfodb. 257s Preparing to unpack .../194-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 257s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 257s Selecting previously unselected package r-cran-crayon. 257s Preparing to unpack .../195-r-cran-crayon_1.5.2-1_all.deb ... 257s Unpacking r-cran-crayon (1.5.2-1) ... 257s Selecting previously unselected package r-bioc-biostrings. 257s Preparing to unpack .../196-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 257s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 257s Selecting previously unselected package r-bioc-keggrest. 257s Preparing to unpack .../197-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 257s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 257s Selecting previously unselected package r-bioc-annotationdbi. 257s Preparing to unpack .../198-r-bioc-annotationdbi_1.64.1-1_all.deb ... 257s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 257s Selecting previously unselected package r-cran-r.methodss3. 257s Preparing to unpack .../199-r-cran-r.methodss3_1.8.2-1_all.deb ... 257s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 257s Selecting previously unselected package r-cran-r.oo. 257s Preparing to unpack .../200-r-cran-r.oo_1.26.0-1_all.deb ... 257s Unpacking r-cran-r.oo (1.26.0-1) ... 257s Selecting previously unselected package r-cran-r.utils. 257s Preparing to unpack .../201-r-cran-r.utils_2.12.3-1_all.deb ... 257s Unpacking r-cran-r.utils (2.12.3-1) ... 258s Selecting previously unselected package r-cran-matrixstats. 258s Preparing to unpack .../202-r-cran-matrixstats_1.2.0-1_s390x.deb ... 258s Unpacking r-cran-matrixstats (1.2.0-1) ... 258s Selecting previously unselected package r-bioc-aroma.light. 258s Preparing to unpack .../203-r-bioc-aroma.light_3.32.0-1_all.deb ... 258s Unpacking r-bioc-aroma.light (3.32.0-1) ... 258s Selecting previously unselected package r-cran-generics. 258s Preparing to unpack .../204-r-cran-generics_0.1.3-1_all.deb ... 258s Unpacking r-cran-generics (0.1.3-1) ... 258s Selecting previously unselected package r-cran-magrittr. 258s Preparing to unpack .../205-r-cran-magrittr_2.0.3-1_s390x.deb ... 258s Unpacking r-cran-magrittr (2.0.3-1) ... 258s Selecting previously unselected package r-cran-fansi. 258s Preparing to unpack .../206-r-cran-fansi_1.0.5-1_s390x.deb ... 258s Unpacking r-cran-fansi (1.0.5-1) ... 258s Selecting previously unselected package r-cran-utf8. 258s Preparing to unpack .../207-r-cran-utf8_1.2.4-1_s390x.deb ... 258s Unpacking r-cran-utf8 (1.2.4-1) ... 258s Selecting previously unselected package r-cran-pillar. 258s Preparing to unpack .../208-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 258s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 258s Selecting previously unselected package r-cran-tibble. 258s Preparing to unpack .../209-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 258s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 258s Selecting previously unselected package r-cran-withr. 258s Preparing to unpack .../210-r-cran-withr_2.5.0-1_all.deb ... 258s Unpacking r-cran-withr (2.5.0-1) ... 258s Selecting previously unselected package r-cran-tidyselect. 258s Preparing to unpack .../211-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 258s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 258s Selecting previously unselected package r-cran-dplyr. 258s Preparing to unpack .../212-r-cran-dplyr_1.1.4-1_s390x.deb ... 258s Unpacking r-cran-dplyr (1.1.4-1) ... 258s Selecting previously unselected package r-cran-purrr. 258s Preparing to unpack .../213-r-cran-purrr_1.0.2-1_s390x.deb ... 258s Unpacking r-cran-purrr (1.0.2-1) ... 258s Selecting previously unselected package r-cran-stringi. 258s Preparing to unpack .../214-r-cran-stringi_1.8.3-1_s390x.deb ... 258s Unpacking r-cran-stringi (1.8.3-1) ... 258s Selecting previously unselected package r-cran-stringr. 258s Preparing to unpack .../215-r-cran-stringr_1.5.1-1_all.deb ... 258s Unpacking r-cran-stringr (1.5.1-1) ... 258s Selecting previously unselected package r-cran-tidyr. 258s Preparing to unpack .../216-r-cran-tidyr_1.3.1-1_s390x.deb ... 258s Unpacking r-cran-tidyr (1.3.1-1) ... 258s Selecting previously unselected package r-cran-dbplyr. 258s Preparing to unpack .../217-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 258s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 258s Selecting previously unselected package r-cran-filelock. 258s Preparing to unpack .../218-r-cran-filelock_1.0.3-1_s390x.deb ... 258s Unpacking r-cran-filelock (1.0.3-1) ... 258s Selecting previously unselected package r-bioc-biocfilecache. 258s Preparing to unpack .../219-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 258s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 258s Selecting previously unselected package r-bioc-biocio. 258s Preparing to unpack .../220-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 258s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 258s Selecting previously unselected package r-cran-formatr. 258s Preparing to unpack .../221-r-cran-formatr_1.14-1_all.deb ... 258s Unpacking r-cran-formatr (1.14-1) ... 258s Selecting previously unselected package r-cran-lambda.r. 258s Preparing to unpack .../222-r-cran-lambda.r_1.2.4-2build1_all.deb ... 258s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 258s Selecting previously unselected package r-cran-futile.options. 258s Preparing to unpack .../223-r-cran-futile.options_1.0.1-3build1_all.deb ... 258s Unpacking r-cran-futile.options (1.0.1-3build1) ... 258s Selecting previously unselected package r-cran-futile.logger. 258s Preparing to unpack .../224-r-cran-futile.logger_1.4.3-4build1_all.deb ... 258s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 258s Selecting previously unselected package r-cran-snow. 258s Preparing to unpack .../225-r-cran-snow_1%3a0.4.4-2_all.deb ... 258s Unpacking r-cran-snow (1:0.4.4-2) ... 258s Selecting previously unselected package r-cran-codetools. 258s Preparing to unpack .../226-r-cran-codetools_0.2-19-1_all.deb ... 258s Unpacking r-cran-codetools (0.2-19-1) ... 258s Selecting previously unselected package r-cran-bh. 258s Preparing to unpack .../227-r-cran-bh_1.84.0-1_all.deb ... 258s Unpacking r-cran-bh (1.84.0-1) ... 258s Selecting previously unselected package r-bioc-biocparallel. 258s Preparing to unpack .../228-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 258s Unpacking r-bioc-biocparallel (1.36.0-1) ... 258s Selecting previously unselected package r-cran-base64enc. 258s Preparing to unpack .../229-r-cran-base64enc_0.1-3-3_s390x.deb ... 258s Unpacking r-cran-base64enc (0.1-3-3) ... 258s Selecting previously unselected package r-cran-digest. 258s Preparing to unpack .../230-r-cran-digest_0.6.34-1_s390x.deb ... 258s Unpacking r-cran-digest (0.6.34-1) ... 258s Selecting previously unselected package r-cran-ellipsis. 258s Preparing to unpack .../231-r-cran-ellipsis_0.3.2-2_s390x.deb ... 258s Unpacking r-cran-ellipsis (0.3.2-2) ... 258s Selecting previously unselected package r-cran-htmltools. 258s Preparing to unpack .../232-r-cran-htmltools_0.5.7-1_s390x.deb ... 258s Unpacking r-cran-htmltools (0.5.7-1) ... 258s Selecting previously unselected package r-cran-evaluate. 258s Preparing to unpack .../233-r-cran-evaluate_0.23-1_all.deb ... 258s Unpacking r-cran-evaluate (0.23-1) ... 258s Selecting previously unselected package r-cran-xfun. 258s Preparing to unpack .../234-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 258s Unpacking r-cran-xfun (0.41+dfsg-1) ... 258s Selecting previously unselected package r-cran-highr. 258s Preparing to unpack .../235-r-cran-highr_0.10+dfsg-1_all.deb ... 258s Unpacking r-cran-highr (0.10+dfsg-1) ... 258s Selecting previously unselected package r-cran-yaml. 258s Preparing to unpack .../236-r-cran-yaml_2.3.8-1_s390x.deb ... 258s Unpacking r-cran-yaml (2.3.8-1) ... 258s Selecting previously unselected package libjs-mathjax. 258s Preparing to unpack .../237-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 258s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 260s Selecting previously unselected package r-cran-knitr. 260s Preparing to unpack .../238-r-cran-knitr_1.45+dfsg-1_all.deb ... 260s Unpacking r-cran-knitr (1.45+dfsg-1) ... 260s Selecting previously unselected package r-cran-jquerylib. 260s Preparing to unpack .../239-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 260s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 260s Selecting previously unselected package r-cran-fs. 260s Preparing to unpack .../240-r-cran-fs_1.6.3+dfsg-1_s390x.deb ... 260s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 260s Selecting previously unselected package r-cran-rappdirs. 260s Preparing to unpack .../241-r-cran-rappdirs_0.3.3-1_s390x.deb ... 260s Unpacking r-cran-rappdirs (0.3.3-1) ... 260s Selecting previously unselected package r-cran-sass. 260s Preparing to unpack .../242-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 260s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 260s Selecting previously unselected package r-cran-bslib. 260s Preparing to unpack .../243-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 260s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 260s Selecting previously unselected package r-cran-fontawesome. 260s Preparing to unpack .../244-r-cran-fontawesome_0.5.2-1_all.deb ... 260s Unpacking r-cran-fontawesome (0.5.2-1) ... 260s Selecting previously unselected package r-cran-tinytex. 260s Preparing to unpack .../245-r-cran-tinytex_0.49-1_all.deb ... 260s Unpacking r-cran-tinytex (0.49-1) ... 260s Selecting previously unselected package libjs-modernizr. 260s Preparing to unpack .../246-libjs-modernizr_2.6.2+ds1-5_all.deb ... 260s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 260s Selecting previously unselected package r-cran-littler. 260s Preparing to unpack .../247-r-cran-littler_0.3.19-1_s390x.deb ... 260s Unpacking r-cran-littler (0.3.19-1) ... 260s Selecting previously unselected package r-cran-pkgkitten. 260s Preparing to unpack .../248-r-cran-pkgkitten_0.2.3-1_all.deb ... 260s Unpacking r-cran-pkgkitten (0.2.3-1) ... 260s Selecting previously unselected package r-cran-rcpp. 260s Preparing to unpack .../249-r-cran-rcpp_1.0.12-1_s390x.deb ... 260s Unpacking r-cran-rcpp (1.0.12-1) ... 260s Selecting previously unselected package r-cran-later. 260s Preparing to unpack .../250-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 260s Unpacking r-cran-later (1.3.2+dfsg-1) ... 260s Selecting previously unselected package r-cran-promises. 260s Preparing to unpack .../251-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 260s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 260s Selecting previously unselected package r-cran-httpuv. 260s Preparing to unpack .../252-r-cran-httpuv_1.6.14+dfsg-1_s390x.deb ... 260s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 260s Selecting previously unselected package r-cran-xtable. 260s Preparing to unpack .../253-r-cran-xtable_1%3a1.8-4-2_all.deb ... 260s Unpacking r-cran-xtable (1:1.8-4-2) ... 260s Selecting previously unselected package r-cran-sourcetools. 260s Preparing to unpack .../254-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 260s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 260s Selecting previously unselected package r-cran-commonmark. 260s Preparing to unpack .../255-r-cran-commonmark_1.9.1-1_s390x.deb ... 260s Unpacking r-cran-commonmark (1.9.1-1) ... 260s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 260s Preparing to unpack .../256-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 260s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 260s Selecting previously unselected package r-cran-shiny. 260s Preparing to unpack .../257-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 260s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 260s Selecting previously unselected package r-cran-rmarkdown. 260s Preparing to unpack .../258-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 260s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 260s Selecting previously unselected package r-cran-bookdown. 260s Preparing to unpack .../259-r-cran-bookdown_0.37+dfsg-1_all.deb ... 260s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 260s Selecting previously unselected package r-cran-biocmanager. 260s Preparing to unpack .../260-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 260s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 260s Selecting previously unselected package tex-common. 261s Preparing to unpack .../261-tex-common_6.18_all.deb ... 261s Unpacking tex-common (6.18) ... 261s Selecting previously unselected package t1utils. 261s Preparing to unpack .../262-t1utils_1.41-4build2_s390x.deb ... 261s Unpacking t1utils (1.41-4build2) ... 261s Selecting previously unselected package texlive-binaries. 261s Preparing to unpack .../263-texlive-binaries_2023.20230311.66589-9_s390x.deb ... 261s Unpacking texlive-binaries (2023.20230311.66589-9) ... 261s Selecting previously unselected package texlive-base. 261s Preparing to unpack .../264-texlive-base_2023.20240207-1_all.deb ... 261s Unpacking texlive-base (2023.20240207-1) ... 263s Selecting previously unselected package texlive-latex-base. 263s Preparing to unpack .../265-texlive-latex-base_2023.20240207-1_all.deb ... 263s Unpacking texlive-latex-base (2023.20240207-1) ... 263s Selecting previously unselected package texlive-bibtex-extra. 263s Preparing to unpack .../266-texlive-bibtex-extra_2023.20240207-1_all.deb ... 263s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 271s Selecting previously unselected package r-bioc-biocstyle. 271s Preparing to unpack .../267-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 271s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 271s Selecting previously unselected package r-cran-xml. 271s Preparing to unpack .../268-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 271s Unpacking r-cran-xml (3.99-0.16.1-1) ... 271s Selecting previously unselected package r-cran-hms. 271s Preparing to unpack .../269-r-cran-hms_1.1.3-1_all.deb ... 271s Unpacking r-cran-hms (1.1.3-1) ... 271s Selecting previously unselected package r-cran-prettyunits. 271s Preparing to unpack .../270-r-cran-prettyunits_1.2.0-1_all.deb ... 271s Unpacking r-cran-prettyunits (1.2.0-1) ... 271s Selecting previously unselected package r-cran-progress. 271s Preparing to unpack .../271-r-cran-progress_1.2.3-1_all.deb ... 271s Unpacking r-cran-progress (1.2.3-1) ... 271s Selecting previously unselected package r-cran-xml2. 271s Preparing to unpack .../272-r-cran-xml2_1.3.6-1_s390x.deb ... 271s Unpacking r-cran-xml2 (1.3.6-1) ... 271s Selecting previously unselected package r-bioc-biomart. 271s Preparing to unpack .../273-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 271s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 271s Selecting previously unselected package r-bioc-genomicranges. 271s Preparing to unpack .../274-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 271s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 271s Selecting previously unselected package r-bioc-rhtslib. 271s Preparing to unpack .../275-r-bioc-rhtslib_2.4.1+dfsg-1_s390x.deb ... 271s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 271s Selecting previously unselected package r-bioc-rsamtools. 271s Preparing to unpack .../276-r-bioc-rsamtools_2.18.0+dfsg-1build1_s390x.deb ... 271s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 271s Selecting previously unselected package r-bioc-matrixgenerics. 271s Preparing to unpack .../277-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 271s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 271s Selecting previously unselected package r-cran-lattice. 271s Preparing to unpack .../278-r-cran-lattice_0.22-5-1_s390x.deb ... 271s Unpacking r-cran-lattice (0.22-5-1) ... 271s Selecting previously unselected package r-cran-matrix. 271s Preparing to unpack .../279-r-cran-matrix_1.6-5-1_s390x.deb ... 271s Unpacking r-cran-matrix (1.6-5-1) ... 271s Selecting previously unselected package r-cran-abind. 271s Preparing to unpack .../280-r-cran-abind_1.4-5-2_all.deb ... 271s Unpacking r-cran-abind (1.4-5-2) ... 271s Selecting previously unselected package r-bioc-s4arrays. 271s Preparing to unpack .../281-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 271s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 271s Selecting previously unselected package r-bioc-sparsearray. 271s Preparing to unpack .../282-r-bioc-sparsearray_1.2.4+dfsg-1_s390x.deb ... 271s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 271s Selecting previously unselected package r-bioc-delayedarray. 271s Preparing to unpack .../283-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ... 271s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 271s Selecting previously unselected package r-bioc-summarizedexperiment. 271s Preparing to unpack .../284-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 271s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 271s Selecting previously unselected package r-bioc-genomicalignments. 271s Preparing to unpack .../285-r-bioc-genomicalignments_1.38.2-1_s390x.deb ... 271s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 271s Selecting previously unselected package r-cran-rjson. 271s Preparing to unpack .../286-r-cran-rjson_0.2.21-1_s390x.deb ... 271s Unpacking r-cran-rjson (0.2.21-1) ... 271s Selecting previously unselected package r-cran-restfulr. 271s Preparing to unpack .../287-r-cran-restfulr_0.0.15-1_s390x.deb ... 271s Unpacking r-cran-restfulr (0.0.15-1) ... 271s Selecting previously unselected package r-bioc-rtracklayer. 271s Preparing to unpack .../288-r-bioc-rtracklayer_1.62.0-1_s390x.deb ... 271s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 271s Selecting previously unselected package r-bioc-bsgenome. 271s Preparing to unpack .../289-r-bioc-bsgenome_1.70.2-1_all.deb ... 271s Unpacking r-bioc-bsgenome (1.70.2-1) ... 272s Selecting previously unselected package r-bioc-dnacopy. 272s Preparing to unpack .../290-r-bioc-dnacopy_1.76.0-1_s390x.deb ... 272s Unpacking r-bioc-dnacopy (1.76.0-1) ... 272s Selecting previously unselected package r-bioc-genomicfeatures. 272s Preparing to unpack .../291-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 272s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 272s Selecting previously unselected package r-bioc-org.hs.eg.db. 272s Preparing to unpack .../292-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 272s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 274s Selecting previously unselected package r-bioc-variantannotation. 274s Preparing to unpack .../293-r-bioc-variantannotation_1.48.1-1_s390x.deb ... 274s Unpacking r-bioc-variantannotation (1.48.1-1) ... 274s Selecting previously unselected package r-cran-rcolorbrewer. 274s Preparing to unpack .../294-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 274s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 274s Selecting previously unselected package r-cran-data.table. 274s Preparing to unpack .../295-r-cran-data.table_1.14.10+dfsg-1_s390x.deb ... 274s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 274s Selecting previously unselected package r-cran-gtable. 274s Preparing to unpack .../296-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 274s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 274s Selecting previously unselected package r-cran-isoband. 274s Preparing to unpack .../297-r-cran-isoband_0.2.7-1_s390x.deb ... 274s Unpacking r-cran-isoband (0.2.7-1) ... 274s Selecting previously unselected package r-cran-mass. 274s Preparing to unpack .../298-r-cran-mass_7.3-60.0.1-1_s390x.deb ... 274s Unpacking r-cran-mass (7.3-60.0.1-1) ... 274s Selecting previously unselected package r-cran-nlme. 274s Preparing to unpack .../299-r-cran-nlme_3.1.164-1_s390x.deb ... 274s Unpacking r-cran-nlme (3.1.164-1) ... 274s Selecting previously unselected package r-cran-mgcv. 274s Preparing to unpack .../300-r-cran-mgcv_1.9-1-1_s390x.deb ... 274s Unpacking r-cran-mgcv (1.9-1-1) ... 274s Selecting previously unselected package r-cran-farver. 274s Preparing to unpack .../301-r-cran-farver_2.1.1-1_s390x.deb ... 274s Unpacking r-cran-farver (2.1.1-1) ... 274s Selecting previously unselected package r-cran-labeling. 274s Preparing to unpack .../302-r-cran-labeling_0.4.3-1_all.deb ... 274s Unpacking r-cran-labeling (0.4.3-1) ... 274s Selecting previously unselected package r-cran-colorspace. 274s Preparing to unpack .../303-r-cran-colorspace_2.1-0+dfsg-1_s390x.deb ... 274s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 274s Selecting previously unselected package r-cran-munsell. 274s Preparing to unpack .../304-r-cran-munsell_0.5.0-2build1_all.deb ... 274s Unpacking r-cran-munsell (0.5.0-2build1) ... 274s Selecting previously unselected package r-cran-viridislite. 274s Preparing to unpack .../305-r-cran-viridislite_0.4.2-2_all.deb ... 274s Unpacking r-cran-viridislite (0.4.2-2) ... 275s Selecting previously unselected package r-cran-scales. 275s Preparing to unpack .../306-r-cran-scales_1.3.0-1_all.deb ... 275s Unpacking r-cran-scales (1.3.0-1) ... 275s Selecting previously unselected package r-cran-ggplot2. 275s Preparing to unpack .../307-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 275s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 275s Selecting previously unselected package r-cran-gridextra. 275s Preparing to unpack .../308-r-cran-gridextra_2.3-3build1_all.deb ... 275s Unpacking r-cran-gridextra (2.3-3build1) ... 275s Selecting previously unselected package r-cran-vgam. 275s Preparing to unpack .../309-r-cran-vgam_1.1-9-1_s390x.deb ... 275s Unpacking r-cran-vgam (1.1-9-1) ... 275s Selecting previously unselected package r-cran-mclust. 275s Preparing to unpack .../310-r-cran-mclust_6.0.1-1_s390x.deb ... 275s Unpacking r-cran-mclust (6.0.1-1) ... 275s Selecting previously unselected package r-bioc-rhdf5lib. 275s Preparing to unpack .../311-r-bioc-rhdf5lib_1.24.2+dfsg-1_s390x.deb ... 275s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 275s Selecting previously unselected package r-bioc-rhdf5filters. 275s Preparing to unpack .../312-r-bioc-rhdf5filters_1.14.1+dfsg-3_s390x.deb ... 275s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 275s Selecting previously unselected package r-bioc-rhdf5. 275s Preparing to unpack .../313-r-bioc-rhdf5_2.46.1+dfsg-1_s390x.deb ... 275s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 275s Selecting previously unselected package r-bioc-purecn. 275s Preparing to unpack .../314-r-bioc-purecn_2.8.1+dfsg-1_all.deb ... 275s Unpacking r-bioc-purecn (2.8.1+dfsg-1) ... 275s Selecting previously unselected package r-cran-brio. 275s Preparing to unpack .../315-r-cran-brio_1.1.4-1_s390x.deb ... 275s Unpacking r-cran-brio (1.1.4-1) ... 275s Selecting previously unselected package r-cran-ps. 275s Preparing to unpack .../316-r-cran-ps_1.7.6-1_s390x.deb ... 275s Unpacking r-cran-ps (1.7.6-1) ... 275s Selecting previously unselected package r-cran-processx. 275s Preparing to unpack .../317-r-cran-processx_3.8.3-1_s390x.deb ... 275s Unpacking r-cran-processx (3.8.3-1) ... 275s Selecting previously unselected package r-cran-callr. 275s Preparing to unpack .../318-r-cran-callr_3.7.3-2_all.deb ... 275s Unpacking r-cran-callr (3.7.3-2) ... 275s Selecting previously unselected package r-cran-lazyeval. 275s Preparing to unpack .../319-r-cran-lazyeval_0.2.2-1build1_s390x.deb ... 275s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 275s Selecting previously unselected package r-cran-rex. 275s Preparing to unpack .../320-r-cran-rex_1.2.1-1_all.deb ... 275s Unpacking r-cran-rex (1.2.1-1) ... 275s Selecting previously unselected package r-cran-covr. 275s Preparing to unpack .../321-r-cran-covr_3.6.4+dfsg-1_s390x.deb ... 275s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 275s Selecting previously unselected package r-cran-desc. 275s Preparing to unpack .../322-r-cran-desc_1.4.3-1_all.deb ... 275s Unpacking r-cran-desc (1.4.3-1) ... 275s Selecting previously unselected package r-cran-diffobj. 275s Preparing to unpack .../323-r-cran-diffobj_0.3.5-1_s390x.deb ... 275s Unpacking r-cran-diffobj (0.3.5-1) ... 275s Selecting previously unselected package r-cran-globals. 275s Preparing to unpack .../324-r-cran-globals_0.16.2-1_all.deb ... 275s Unpacking r-cran-globals (0.16.2-1) ... 275s Selecting previously unselected package r-cran-listenv. 275s Preparing to unpack .../325-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 275s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 275s Selecting previously unselected package r-cran-parallelly. 275s Preparing to unpack .../326-r-cran-parallelly_1.37.1-1_s390x.deb ... 275s Unpacking r-cran-parallelly (1.37.1-1) ... 275s Selecting previously unselected package r-cran-future. 275s Preparing to unpack .../327-r-cran-future_1.33.1+dfsg-1_all.deb ... 275s Unpacking r-cran-future (1.33.1+dfsg-1) ... 275s Selecting previously unselected package r-cran-getopt. 275s Preparing to unpack .../328-r-cran-getopt_1.20.4-1_all.deb ... 275s Unpacking r-cran-getopt (1.20.4-1) ... 275s Selecting previously unselected package r-cran-markdown. 275s Preparing to unpack .../329-r-cran-markdown_1.12+dfsg-1_all.deb ... 275s Unpacking r-cran-markdown (1.12+dfsg-1) ... 275s Selecting previously unselected package r-cran-optparse. 275s Preparing to unpack .../330-r-cran-optparse_1.7.4-1_all.deb ... 275s Unpacking r-cran-optparse (1.7.4-1) ... 275s Selecting previously unselected package r-cran-pkgbuild. 275s Preparing to unpack .../331-r-cran-pkgbuild_1.4.3-1_all.deb ... 275s Unpacking r-cran-pkgbuild (1.4.3-1) ... 276s Selecting previously unselected package r-cran-rprojroot. 276s Preparing to unpack .../332-r-cran-rprojroot_2.0.4-1_all.deb ... 276s Unpacking r-cran-rprojroot (2.0.4-1) ... 276s Selecting previously unselected package r-cran-pkgload. 276s Preparing to unpack .../333-r-cran-pkgload_1.3.4-1_all.deb ... 276s Unpacking r-cran-pkgload (1.3.4-1) ... 276s Selecting previously unselected package r-cran-praise. 276s Preparing to unpack .../334-r-cran-praise_1.0.0-4build1_all.deb ... 276s Unpacking r-cran-praise (1.0.0-4build1) 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r-cran-dbi (1.2.2-1) ... 281s Setting up r-cran-highr (0.10+dfsg-1) ... 281s Setting up r-cran-prettyunits (1.2.0-1) ... 281s Setting up r-cran-fansi (1.0.5-1) ... 281s Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 281s Setting up r-cran-mass (7.3-60.0.1-1) ... 281s Setting up r-cran-mclust (6.0.1-1) ... 281s Setting up r-cran-snow (1:0.4.4-2) ... 281s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 281s Setting up r-cran-glue (1.7.0-1) ... 281s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 281s Setting up r-cran-bit (4.0.5-1) ... 281s Setting up r-cran-xtable (1:1.8-4-2) ... 281s Setting up r-cran-cli (3.6.2-1) ... 281s Setting up gfortran (4:13.2.0-7ubuntu1) ... 281s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 281s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 281s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 281s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 281s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 281s Setting up r-cran-bitops (1.0-7-1) ... 281s Setting up r-cran-rprojroot (2.0.4-1) ... 281s Setting up r-cran-bit64 (4.0.5-1) ... 281s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 281s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 281s Setting up r-cran-askpass (1.2.0-1) ... 281s Setting up r-cran-fastmap (1.1.1-1) ... 281s Setting up r-cran-png (0.1-8-1) ... 281s Setting up r-cran-r.methodss3 (1.8.2-1) ... 281s Setting up r-bioc-biobase (2.62.0-1) ... 281s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 281s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 281s Setting up r-cran-getopt (1.20.4-1) ... 281s Setting up r-cran-utf8 (1.2.4-1) ... 281s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 281s Setting up r-cran-parallelly (1.37.1-1) ... 281s Setting up r-cran-stringi (1.8.3-1) ... 281s Setting up texlive-latex-base (2023.20240207-1) ... 281s Setting up r-cran-rex (1.2.1-1) ... 281s Setting up r-cran-markdown (1.12+dfsg-1) ... 281s Setting up r-cran-cpp11 (0.4.7-1) ... 281s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 281s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 281s Setting up r-cran-isoband (0.2.7-1) ... 281s Setting up r-cran-futile.logger (1.4.3-4build1) ... 281s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 281s Setting up r-cran-later (1.3.2+dfsg-1) ... 281s Setting up r-cran-matrix (1.6-5-1) ... 281s Setting up r-cran-tinytex (0.49-1) ... 281s Setting up r-cran-knitr (1.45+dfsg-1) ... 281s Setting up r-cran-mgcv (1.9-1-1) ... 281s Setting up r-bioc-dnacopy (1.76.0-1) ... 281s Setting up r-cran-cachem (1.0.8-1) ... 281s Setting up r-bioc-iranges (2.36.0-1) ... 281s Setting up r-cran-rjson (0.2.21-1) ... 281s Setting up r-cran-globals (0.16.2-1) ... 281s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 281s Setting up r-cran-restfulr (0.0.15-1) ... 281s Setting up r-cran-optparse (1.7.4-1) ... 281s Setting up r-cran-vctrs (0.6.5-1) ... 281s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 281s Setting up r-cran-ellipsis (0.3.2-2) ... 281s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 281s Setting up r-base-dev (4.3.2-1build1) ... 281s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 281s Setting up r-cran-stringr (1.5.1-1) ... 281s Setting up r-bioc-biocparallel (1.36.0-1) ... 281s Setting up r-cran-callr (3.7.3-2) ... 281s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 281s Setting up r-cran-desc (1.4.3-1) ... 281s Setting up r-cran-xml2 (1.3.6-1) ... 281s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 281s Setting up r-cran-munsell (0.5.0-2build1) ... 281s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 281s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 281s Setting up r-cran-r.oo (1.26.0-1) ... 281s Setting up r-cran-future (1.33.1+dfsg-1) ... 281s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 281s Setting up texlive-bibtex-extra (2023.20240207-1) ... 281s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 281s Setting up r-cran-httr (1.4.7+dfsg-1) ... 281s Setting up r-cran-gridextra (2.3-3build1) ... 281s Setting up r-cran-hms (1.1.3-1) ... 281s Setting up r-cran-scales (1.3.0-1) ... 281s Setting up r-cran-memoise (2.0.1-1) ... 281s Setting up r-cran-covr (3.6.4+dfsg-1) ... 281s Setting up r-cran-promises (1.2.1+dfsg-1) ... 281s Setting up r-cran-purrr (1.0.2-1) ... 281s Setting up r-cran-blob (1.2.4-1) ... 281s Setting up r-cran-htmltools (0.5.7-1) ... 281s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 281s Setting up r-bioc-xvector (0.42.0-1) ... 281s Setting up r-cran-pkgbuild (1.4.3-1) ... 281s Setting up r-cran-sass (0.4.8+dfsg-1) ... 281s Setting up r-cran-dplyr (1.1.4-1) ... 281s Setting up r-cran-rsqlite (2.3.4-1) ... 281s Setting up r-cran-progress (1.2.3-1) ... 281s Setting up r-cran-pkgload (1.3.4-1) ... 281s Setting up r-cran-r.utils (2.12.3-1) ... 281s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 281s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 281s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 281s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 281s Setting up r-cran-rematch2 (2.1.2-2build1) ... 281s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 281s Setting up r-cran-fontawesome (0.5.2-1) ... 281s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 281s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 281s Setting up r-cran-waldo (0.5.2-1build1) ... 281s Setting up r-cran-tidyr (1.3.1-1) ... 281s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 281s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 281s Setting up r-bioc-aroma.light (3.32.0-1) ... 281s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 281s Setting up r-cran-r.cache (0.16.0-1) ... 281s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 281s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 281s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 281s Setting up r-bioc-annotationdbi (1.64.1-1) ... 281s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 281s Setting up r-cran-testthat (3.2.1-1) ... 281s Setting up r-cran-pscbs (0.66.0-2) ... 281s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 281s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 281s Setting up r-bioc-genomicalignments (1.38.2-1) ... 281s Setting up r-cran-bookdown (0.37+dfsg-1) ... 281s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 281s Setting up r-bioc-rtracklayer (1.62.0-1) ... 281s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 281s Setting up r-bioc-bsgenome (1.70.2-1) ... 281s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 281s Setting up r-bioc-variantannotation (1.48.1-1) ... 281s Setting up r-bioc-purecn (2.8.1+dfsg-1) ... 281s Setting up autopkgtest-satdep (0) ... 281s Processing triggers for man-db (2.12.0-3) ... 281s Processing triggers for install-info (7.1-3) ... 281s Processing triggers for libc-bin (2.39-0ubuntu2) ... 281s Processing triggers for tex-common (6.18) ... 282s Running updmap-sys. This may take some time... done. 282s Running mktexlsr /var/lib/texmf ... done. 282s Building format(s) --all. 326s This may take some time... done. 335s (Reading database ... 106716 files and directories currently installed.) 335s Removing autopkgtest-satdep (0) ... 335s autopkgtest [18:52:19]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 335s autopkgtest [18:52:19]: test pkg-r-autopkgtest: [----------------------- 336s Test: Try to load the R library PureCN 336s 336s R version 4.3.2 (2023-10-31) -- "Eye Holes" 336s Copyright (C) 2023 The R Foundation for Statistical Computing 336s Platform: s390x-ibm-linux-gnu (64-bit) 336s 336s R is free software and comes with ABSOLUTELY NO WARRANTY. 336s You are welcome to redistribute it under certain conditions. 336s Type 'license()' or 'licence()' for distribution details. 336s 336s R is a collaborative project with many contributors. 336s Type 'contributors()' for more information and 336s 'citation()' on how to cite R or R packages in publications. 336s 336s Type 'demo()' for some demos, 'help()' for on-line help, or 336s 'help.start()' for an HTML browser interface to help. 336s Type 'q()' to quit R. 336s 336s > library('PureCN') 336s Loading required package: DNAcopy 336s Loading required package: VariantAnnotation 336s Loading required package: BiocGenerics 336s 336s Attaching package: ‘BiocGenerics’ 336s 336s The following objects are masked from ‘package:stats’: 336s 336s IQR, mad, sd, var, xtabs 336s 336s The following objects are masked from ‘package:base’: 336s 336s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 336s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 336s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 336s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 336s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 336s table, tapply, union, unique, unsplit, which.max, which.min 336s 336s Loading required package: MatrixGenerics 336s Loading required package: matrixStats 336s 336s Attaching package: ‘MatrixGenerics’ 336s 336s The following objects are masked from ‘package:matrixStats’: 336s 336s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 336s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 336s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 336s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 336s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 336s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 336s colWeightedMeans, colWeightedMedians, colWeightedSds, 336s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 336s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 336s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 336s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 336s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 336s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 336s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 336s rowWeightedSds, rowWeightedVars 336s 336s Loading required package: GenomeInfoDb 336s Loading required package: S4Vectors 336s Loading required package: stats4 337s 337s Attaching package: ‘S4Vectors’ 337s 337s The following object is masked from ‘package:utils’: 337s 337s findMatches 337s 337s The following objects are masked from ‘package:base’: 337s 337s expand.grid, I, unname 337s 337s Loading required package: IRanges 338s Loading required package: GenomicRanges 338s Loading required package: SummarizedExperiment 338s Loading required package: Biobase 338s Welcome to Bioconductor 338s 338s Vignettes contain introductory material; view with 338s 'browseVignettes()'. To cite Bioconductor, see 338s 'citation("Biobase")', and for packages 'citation("pkgname")'. 338s 338s 338s Attaching package: ‘Biobase’ 338s 338s The following object is masked from ‘package:MatrixGenerics’: 338s 338s rowMedians 338s 338s The following objects are masked from ‘package:matrixStats’: 338s 338s anyMissing, rowMedians 338s 341s Loading required package: Rsamtools 341s Loading required package: Biostrings 341s Loading required package: XVector 341s 341s Attaching package: ‘Biostrings’ 341s 341s The following object is masked from ‘package:base’: 341s 341s strsplit 341s 347s 347s Attaching package: ‘VariantAnnotation’ 347s 347s The following object is masked from ‘package:base’: 347s 347s tabulate 347s 348s > 348s > 348s Warning message: 348s package ‘Rsamtools’ was built under R version 4.3.3 348s Other tests are currently unsupported! 348s They will be progressively added. 348s autopkgtest [18:52:32]: test pkg-r-autopkgtest: -----------------------] 349s autopkgtest [18:52:33]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 349s pkg-r-autopkgtest PASS 349s autopkgtest [18:52:33]: @@@@@@@@@@@@@@@@@@@@ summary 349s pkg-r-autopkgtest PASS 369s Creating nova instance adt-noble-s390x-r-bioc-purecn-20240316-184644-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...