0s autopkgtest [02:03:09]: starting date and time: 2024-03-23 02:03:09+0000
  0s autopkgtest [02:03:09]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [02:03:09]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0grcfubw/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:megadepth,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade r-bioc-megadepth --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=megadepth/1.2.0-4build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-17.secgroup --name adt-noble-s390x-r-bioc-megadepth-20240323-020309-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
117s autopkgtest [02:05:06]: testbed dpkg architecture: s390x
117s autopkgtest [02:05:06]: testbed apt version: 2.7.12
117s autopkgtest [02:05:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup
118s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
118s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB]
119s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.7 kB]
119s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
119s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4035 kB]
120s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [661 kB]
121s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B]
121s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B]
121s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B]
121s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4189 kB]
121s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B]
121s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [47.5 kB]
121s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B]
123s Fetched 9622 kB in 4s (2175 kB/s)
123s Reading package lists...
126s Reading package lists...
126s Building dependency tree...
126s Reading state information...
126s Calculating upgrade...
126s The following packages will be REMOVED:
126s   libssl3
126s The following NEW packages will be installed:
126s   libssl3t64
126s The following packages have been kept back:
126s   curl
126s The following packages will be upgraded:
126s   openssl
126s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded.
126s Need to get 2685 kB of archives.
126s After this operation, 239 kB of additional disk space will be used.
126s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB]
127s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB]
127s Fetched 2685 kB in 1s (3110 kB/s)
127s (Reading database ... 
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(Reading database ... 52170 files and directories currently installed.)
127s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ...
127s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ...
127s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested:
127s  wget depends on libssl3 (>= 3.0.0).
127s  tnftp depends on libssl3 (>= 3.0.0).
127s  tcpdump depends on libssl3 (>= 3.0.0).
127s  systemd-resolved depends on libssl3 (>= 3.0.0).
127s  systemd depends on libssl3 (>= 3.0.0).
127s  sudo depends on libssl3 (>= 3.0.0).
127s  s390-tools depends on libssl3 (>= 3.0.0).
127s  rsync depends on libssl3 (>= 3.0.0).
127s  python3-cryptography depends on libssl3 (>= 3.0.0).
127s  openssh-server depends on libssl3 (>= 3.0.10).
127s  openssh-client depends on libssl3 (>= 3.0.10).
127s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
127s  libsystemd-shared:s390x depends on libssl3 (>= 3.0.0).
127s  libssh-4:s390x depends on libssl3 (>= 3.0.0).
127s  libsasl2-modules:s390x depends on libssl3 (>= 3.0.0).
127s  libsasl2-2:s390x depends on libssl3 (>= 3.0.0).
127s  libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0).
127s  libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0).
127s  libnvme1 depends on libssl3 (>= 3.0.0).
127s  libkrb5-3:s390x depends on libssl3 (>= 3.0.0).
127s  libkmod2:s390x depends on libssl3 (>= 3.0.0).
127s  libfido2-1:s390x depends on libssl3 (>= 3.0.0).
127s  libcurl4:s390x depends on libssl3 (>= 3.0.0).
127s  libcryptsetup12:s390x depends on libssl3 (>= 3.0.0).
127s  kmod depends on libssl3 (>= 3.0.0).
127s  dhcpcd-base depends on libssl3 (>= 3.0.0).
127s  bind9-libs:s390x depends on libssl3 (>= 3.0.0).
127s 
128s (Reading database ... 
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(Reading database ... 52170 files and directories currently installed.)
128s Removing libssl3:s390x (3.0.10-1ubuntu4) ...
128s Selecting previously unselected package libssl3t64:s390x.
128s (Reading database ... 
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(Reading database ... 52159 files and directories currently installed.)
128s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ...
128s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ...
128s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ...
128s Setting up openssl (3.0.13-0ubuntu2) ...
128s Processing triggers for man-db (2.12.0-3) ...
128s Processing triggers for libc-bin (2.39-0ubuntu2) ...
128s Reading package lists...
129s Building dependency tree...
129s Reading state information...
129s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
129s Unknown architecture, assuming PC-style ttyS0
129s sh: Attempting to set up Debian/Ubuntu apt sources automatically
129s sh: Distribution appears to be Ubuntu
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s eatmydata is already the newest version (131-1).
130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
131s dbus is already the newest version (1.14.10-4ubuntu1).
131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
131s Reading package lists...
131s Building dependency tree...
131s Reading state information...
131s rng-tools-debian is already the newest version (2.4).
131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
131s Reading package lists...
131s Building dependency tree...
131s Reading state information...
131s The following packages will be REMOVED:
131s   cloud-init* python3-configobj* python3-debconf*
131s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
131s After this operation, 3256 kB disk space will be freed.
132s (Reading database ... 
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(Reading database ... 52172 files and directories currently installed.)
132s Removing cloud-init (24.1.2-0ubuntu1) ...
132s Removing python3-configobj (5.0.8-3) ...
132s Removing python3-debconf (1.5.86) ...
132s Processing triggers for man-db (2.12.0-3) ...
132s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 51783 files and directories currently installed.)
132s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
133s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
133s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
133s invoke-rc.d: policy-rc.d denied execution of try-restart.
133s Reading package lists...
133s Building dependency tree...
133s Reading state information...
133s linux-generic is already the newest version (6.8.0-11.11+1).
133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
134s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
134s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
134s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
136s Reading package lists...
136s Reading package lists...
136s Building dependency tree...
136s Reading state information...
136s Calculating upgrade...
136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
136s Reading package lists...
136s Building dependency tree...
136s Reading state information...
136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
136s autopkgtest [02:05:25]: rebooting testbed after setup commands that affected boot
152s autopkgtest [02:05:41]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024
155s autopkgtest [02:05:44]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-megadepth
156s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-megadepth 1.12.0+ds-2 (dsc) [2212 B]
156s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-megadepth 1.12.0+ds-2 (tar) [47.1 kB]
156s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-megadepth 1.12.0+ds-2 (diff) [5632 B]
157s gpgv: Signature made Tue Dec 19 09:50:10 2023 UTC
157s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
157s gpgv:                issuer "tille@debian.org"
157s gpgv: Can't check signature: No public key
157s dpkg-source: warning: cannot verify inline signature for ./r-bioc-megadepth_1.12.0+ds-2.dsc: no acceptable signature found
157s autopkgtest [02:05:46]: testing package r-bioc-megadepth version 1.12.0+ds-2
157s autopkgtest [02:05:46]: build not needed
157s pkg-r-autopkgtest    SKIP Test declares architecture as not supported: s390x
164s pkg-r-autopkgtest    SKIP Test declares architecture as not supported: s390x
164s autopkgtest [02:05:53]: @@@@@@@@@@@@@@@@@@@@ summary
164s pkg-r-autopkgtest    SKIP Test declares architecture as not supported: s390x
164s pkg-r-autopkgtest    SKIP Test declares architecture as not supported: s390x
176s Creating nova instance adt-noble-s390x-r-bioc-megadepth-20240323-020309-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240322.img (UUID c8671f9a-0e89-48e3-af4f-3c79b89294e8)...