0s autopkgtest [18:57:27]: starting date and time: 2024-03-16 18:57:27+0000 0s autopkgtest [18:57:27]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:57:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wbabi4t8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-variantannotation,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-genomicfiles --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-5.secgroup --name adt-noble-s390x-r-bioc-genomicfiles-20240316-185727-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 204s autopkgtest [19:00:51]: testbed dpkg architecture: s390x 205s autopkgtest [19:00:52]: testbed apt version: 2.7.12 205s autopkgtest [19:00:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 205s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 206s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 206s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 206s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 206s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 206s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB] 206s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 206s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 206s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 206s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3752 kB] 206s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 206s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB] 206s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 208s Fetched 8760 kB in 2s (3893 kB/s) 208s Reading package lists... 211s Reading package lists... 211s Building dependency tree... 211s Reading state information... 211s Calculating upgrade... 211s The following packages will be REMOVED: 211s libssl3 211s The following NEW packages will be installed: 211s libssl3t64 211s The following packages have been kept back: 211s curl 211s The following packages will be upgraded: 211s openssl ubuntu-minimal ubuntu-standard 211s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 211s Need to get 2680 kB of archives. 211s After this operation, 23.6 kB of additional disk space will be used. 211s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 212s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 212s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB] 212s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB] 213s Fetched 2680 kB in 1s (2560 kB/s) 213s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 213s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 213s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 213s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 213s wget depends on libssl3 (>= 3.0.0). 213s tnftp depends on libssl3 (>= 3.0.0). 213s tcpdump depends on libssl3 (>= 3.0.0). 213s systemd-resolved depends on libssl3 (>= 3.0.0). 213s systemd depends on libssl3 (>= 3.0.0). 213s sudo depends on libssl3 (>= 3.0.0). 213s s390-tools depends on libssl3 (>= 3.0.0). 213s rsync depends on libssl3 (>= 3.0.0). 213s python3-cryptography depends on libssl3 (>= 3.0.0). 213s openssh-server depends on libssl3 (>= 3.0.10). 213s openssh-client depends on libssl3 (>= 3.0.10). 213s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 213s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 213s libssh-4:s390x depends on libssl3 (>= 3.0.0). 213s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 213s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 213s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 213s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 213s libnvme1 depends on libssl3 (>= 3.0.0). 213s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 213s libkmod2:s390x depends on libssl3 (>= 3.0.0). 213s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 213s libcurl4:s390x depends on libssl3 (>= 3.0.0). 213s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 213s kmod depends on libssl3 (>= 3.0.0). 213s dhcpcd-base depends on libssl3 (>= 3.0.0). 213s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 213s 213s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 213s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 213s Selecting previously unselected package libssl3t64:s390x. 213s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 213s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 213s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 213s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ... 213s Unpacking ubuntu-minimal (1.536) over (1.535) ... 213s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ... 213s Unpacking ubuntu-standard (1.536) over (1.535) ... 213s Setting up ubuntu-minimal (1.536) ... 213s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 213s Setting up ubuntu-standard (1.536) ... 213s Setting up openssl (3.0.13-0ubuntu1) ... 213s Processing triggers for man-db (2.12.0-3) ... 213s Processing triggers for libc-bin (2.39-0ubuntu2) ... 214s Reading package lists... 214s Building dependency tree... 214s Reading state information... 214s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 214s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 214s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 214s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 214s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 216s Reading package lists... 216s Reading package lists... 216s Building dependency tree... 216s Reading state information... 216s Calculating upgrade... 216s The following packages have been kept back: 216s curl 216s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 216s Reading package lists... 216s Building dependency tree... 216s Reading state information... 217s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 219s autopkgtest [19:01:06]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 219s autopkgtest [19:01:06]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicfiles 221s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (dsc) [2416 B] 221s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (tar) [291 kB] 221s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (diff) [5272 B] 221s gpgv: Signature made Fri Dec 1 10:41:34 2023 UTC 221s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 221s gpgv: issuer "tillea@rki.de" 221s gpgv: Can't check signature: No public key 221s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfiles_1.38.0+dfsg-1.dsc: no acceptable signature found 221s autopkgtest [19:01:08]: testing package r-bioc-genomicfiles version 1.38.0+dfsg-1 221s autopkgtest [19:01:08]: build not needed 222s autopkgtest [19:01:09]: test pkg-r-autopkgtest: preparing testbed 226s Reading package lists... 226s Building dependency tree... 226s Reading state information... 226s Starting pkgProblemResolver with broken count: 0 226s Starting 2 pkgProblemResolver with broken count: 0 226s Done 226s The following additional packages will be installed: 226s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl 226s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 226s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 226s g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 226s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 226s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 226s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 226s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 226s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 226s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 226s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl 226s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 226s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 226s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 226s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 226s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 226s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 226s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 226s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 226s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 226s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 226s libpng-dev libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 226s libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 226s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 226s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 226s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 226s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 226s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 226s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 226s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 226s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-genefilter 226s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 226s r-bioc-genomicfeatures r-bioc-genomicfiles r-bioc-genomicranges 226s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib 226s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 226s r-bioc-snpstats r-bioc-sparsearray r-bioc-summarizedexperiment 226s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 226s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 226s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 226s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 226s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 226s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 226s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 226s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 226s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 226s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 226s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 226s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 226s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 226s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 226s r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang 226s r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny 226s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 226s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 226s r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 226s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 226s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 226s xdg-utils zip zlib1g-dev 226s Suggested packages: 226s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 226s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 226s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 226s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 226s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 226s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 226s libboost-context1.83-dev libboost-contract1.83-dev 226s libboost-coroutine1.83-dev libboost-date-time1.83-dev 226s libboost-exception1.83-dev libboost-fiber1.83-dev 226s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 226s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 226s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 226s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 226s libboost-numpy1.83-dev libboost-program-options1.83-dev 226s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 226s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 226s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 226s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 226s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 226s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 226s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 226s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 226s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 226s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 226s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 226s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 226s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 226s r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel 226s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 226s r-cran-webmockr r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats 226s r-cran-class r-cran-rcolorbrewer r-cran-r.utils r-bioc-edger 226s r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz 226s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 226s r-cran-hexbin r-bioc-rhdf5 r-cran-ggplot2 r-cran-roxygen2 r-cran-ff 226s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-getopt 226s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 226s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 226s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 226s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 226s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 226s texlive-latex-base-doc wp2latex 226s Recommended packages: 226s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 226s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 226s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 226s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 226s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 226s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 226s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 226s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 226s r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-waldo r-cran-cairo 226s r-cran-markdown r-cran-ragg r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf 226s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 226s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 226s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 226s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 226s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 226s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 226s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 227s The following packages will be REMOVED: 227s libcurl4 libpsl5 227s The following NEW packages will be installed: 227s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 227s cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config 227s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 227s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 227s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 227s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 227s gfortran-s390x-linux-gnu icu-devtools javascript-common libasan8 libatomic1 227s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 227s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 227s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev 227s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 227s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 227s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 227s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 227s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 227s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 227s libjs-popper.js libjs-prettify libjs-sifter.js 227s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 227s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 227s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 227s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 227s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 227s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 227s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 227s libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 227s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 227s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 227s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 227s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 227s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 227s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 227s r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb 227s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 227s r-bioc-genomicfiles r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 227s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 227s r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 227s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 227s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 227s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 227s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 227s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 227s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 227s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 227s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 227s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 227s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 227s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 227s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 227s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 227s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 227s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 227s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 227s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 227s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 227s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 227s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 227s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 227s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 227s The following packages will be upgraded: 227s curl 227s 1 upgraded, 281 newly installed, 2 to remove and 0 not upgraded. 227s Need to get 453 MB/453 MB of archives. 227s After this operation, 1424 MB of additional disk space will be used. 227s Get:1 /tmp/autopkgtest.LBCvoh/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [776 B] 227s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB] 227s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB] 227s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB] 227s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 227s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 227s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 227s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 227s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 227s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 228s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 228s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 228s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 228s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 229s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 229s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 229s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 229s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 229s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 229s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 229s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 229s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 229s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 229s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 229s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 230s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 230s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 230s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 230s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 230s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 230s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 230s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 230s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 230s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 230s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 230s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 230s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 230s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 230s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 230s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 230s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 230s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 230s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 230s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 231s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 231s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 231s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 231s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 231s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 231s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 231s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 231s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 231s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 231s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 231s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 231s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 231s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 231s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 231s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 231s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 231s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 231s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 231s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 231s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 231s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 231s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 231s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 231s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 231s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 231s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 232s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 232s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 232s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 232s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 232s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 232s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 232s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 232s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 232s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 232s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 232s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 232s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 232s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 232s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 232s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 232s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 232s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 232s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 232s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 232s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 232s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 232s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 232s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 232s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9 [66.4 kB] 232s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 232s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 232s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 232s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 232s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 232s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 232s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 232s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 232s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 233s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 233s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 233s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 233s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 233s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 233s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 233s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 233s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 233s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 233s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 233s Get:114 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9 [41.6 kB] 233s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 233s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 233s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 233s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9 [65.0 kB] 233s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 233s Get:120 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 233s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9 [132 kB] 233s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 233s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 233s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 233s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 233s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 233s Get:127 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 233s Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 233s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3 [49.3 kB] 233s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 233s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1 [186 kB] 233s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 233s Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13 s390x 0.13.72+dfsg.1-1.1 [26.1 kB] 233s Get:134 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 233s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 233s Get:136 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 233s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 233s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 235s Get:139 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 235s Get:140 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 235s Get:141 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 235s Get:142 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 235s Get:143 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 235s Get:144 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 235s Get:145 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 236s Get:146 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 236s Get:147 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 236s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 236s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 236s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 236s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 236s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 237s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 237s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 237s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 237s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 237s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 237s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 237s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 237s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 237s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 237s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 237s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 237s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 237s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 237s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 237s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 237s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 237s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB] 237s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 237s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 237s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 237s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 237s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB] 237s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 237s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 237s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB] 237s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 237s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 237s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 237s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1 [794 kB] 237s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 238s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 238s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 238s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 238s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 238s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 239s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 239s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 239s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 239s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 239s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 239s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 239s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 239s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 239s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 239s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 239s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 239s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 239s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 239s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 239s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 239s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 239s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 240s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 240s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 240s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 240s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 240s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 240s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 240s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 240s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 240s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 240s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 240s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 240s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 240s Get:217 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 240s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 240s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 240s Get:220 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 240s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 240s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 240s Get:223 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 240s Get:224 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 240s Get:225 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 240s Get:226 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 240s Get:227 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 240s Get:228 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 240s Get:229 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 240s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 240s Get:231 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 240s Get:232 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 240s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 240s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 240s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 240s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 241s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 241s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 241s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1 [519 kB] 241s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 241s Get:241 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 241s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 241s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 241s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 241s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 241s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 241s Get:247 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 241s Get:248 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 241s Get:249 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9 [9353 kB] 241s Get:250 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 242s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 242s Get:252 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 245s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 245s Get:254 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 245s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 245s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 245s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 245s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 245s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 245s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-1 [1410 kB] 245s Get:261 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1 [3688 kB] 245s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 245s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 245s Get:264 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 245s Get:265 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 246s Get:266 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 246s Get:267 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 246s Get:268 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 246s Get:269 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 246s Get:270 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 246s Get:271 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 246s Get:272 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 246s Get:273 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 246s Get:274 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 246s Get:275 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-bsgenome all 1.70.2-1 [6975 kB] 246s Get:276 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-survival s390x 3.5-8-1 [6161 kB] 246s Get:277 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genefilter s390x 1.84.0-1 [1124 kB] 246s Get:278 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 247s Get:279 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-bioc-variantannotation s390x 1.48.1-1build1 [3578 kB] 247s Get:280 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfiles all 1.38.0+dfsg-1 [532 kB] 247s Get:281 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-snpstats s390x 1.52.0+dfsg-1 [7253 kB] 247s Get:282 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-runit all 0.4.32-3 [283 kB] 248s Preconfiguring packages ... 248s Fetched 453 MB in 20s (22.2 MB/s) 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 248s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ... 248s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 248s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested: 248s wget depends on libpsl5 (>= 0.16.0). 248s libcurl4:s390x depends on libpsl5 (>= 0.16.0). 248s libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0). 248s 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 248s Removing libpsl5:s390x (0.21.2-1build1) ... 248s Selecting previously unselected package libpsl5t64:s390x. 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52168 files and directories currently installed.) 248s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ... 248s Unpacking libpsl5t64:s390x (0.21.2-1.1) ... 248s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested: 248s s390-tools depends on libcurl4 (>= 7.16.2). 248s 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52174 files and directories currently installed.) 248s Removing libcurl4:s390x (8.5.0-2ubuntu2) ... 248s Selecting previously unselected package libcurl4t64:s390x. 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52169 files and directories currently installed.) 248s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ... 248s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ... 248s Selecting previously unselected package libc-dev-bin. 248s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 248s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 248s Selecting previously unselected package linux-libc-dev:s390x. 248s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ... 248s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 248s Selecting previously unselected package libcrypt-dev:s390x. 248s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 248s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 248s Selecting previously unselected package libtirpc-dev:s390x. 248s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 248s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 248s Selecting previously unselected package libnsl-dev:s390x. 248s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ... 248s Unpacking libnsl-dev:s390x (1.3.0-3) ... 248s Selecting previously unselected package rpcsvc-proto. 248s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 248s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 248s Selecting previously unselected package libc6-dev:s390x. 248s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ... 248s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 248s Selecting previously unselected package libisl23:s390x. 248s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ... 248s Unpacking libisl23:s390x (0.26-3) ... 248s Selecting previously unselected package libmpc3:s390x. 248s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ... 248s Unpacking libmpc3:s390x (1.3.1-1) ... 248s Selecting previously unselected package cpp-13-s390x-linux-gnu. 248s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 248s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 249s Selecting previously unselected package cpp-13. 249s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 249s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 249s Selecting previously unselected package cpp-s390x-linux-gnu. 249s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 249s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 249s Selecting previously unselected package cpp. 249s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 249s Unpacking cpp (4:13.2.0-7ubuntu1) ... 249s Selecting previously unselected package libcc1-0:s390x. 249s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 249s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 249s Selecting previously unselected package libgomp1:s390x. 249s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 249s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 249s Selecting previously unselected package libitm1:s390x. 249s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ... 249s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 249s Selecting previously unselected package libatomic1:s390x. 249s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 249s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 249s Selecting previously unselected package libasan8:s390x. 249s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ... 249s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 249s Selecting previously unselected package libubsan1:s390x. 249s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 249s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 249s Selecting previously unselected package libgcc-13-dev:s390x. 249s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 249s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 249s Selecting previously unselected package gcc-13-s390x-linux-gnu. 249s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 249s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 249s Selecting previously unselected package gcc-13. 249s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 249s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 249s Selecting previously unselected package gcc-s390x-linux-gnu. 249s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 249s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 249s Selecting previously unselected package gcc. 249s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 249s Unpacking gcc (4:13.2.0-7ubuntu1) ... 249s Selecting previously unselected package libstdc++-13-dev:s390x. 249s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 249s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 250s Selecting previously unselected package g++-13-s390x-linux-gnu. 250s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 250s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 250s Selecting previously unselected package g++-13. 250s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ... 250s Unpacking g++-13 (13.2.0-17ubuntu2) ... 250s Selecting previously unselected package g++-s390x-linux-gnu. 250s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 250s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 250s Selecting previously unselected package g++. 250s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 250s Unpacking g++ (4:13.2.0-7ubuntu1) ... 250s Selecting previously unselected package build-essential. 250s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ... 250s Unpacking build-essential (12.10ubuntu1) ... 250s Selecting previously unselected package dctrl-tools. 250s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ... 250s Unpacking dctrl-tools (2.24-3build2) ... 250s Selecting previously unselected package libfreetype6:s390x. 250s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 250s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 250s Selecting previously unselected package fonts-dejavu-mono. 250s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 250s Unpacking fonts-dejavu-mono (2.37-8) ... 250s Selecting previously unselected package fonts-dejavu-core. 250s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 250s Unpacking fonts-dejavu-core (2.37-8) ... 250s Selecting previously unselected package fontconfig-config. 250s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 250s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 250s Selecting previously unselected package libfontconfig1:s390x. 250s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 250s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 250s Selecting previously unselected package fontconfig. 250s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 250s Unpacking fontconfig (2.15.0-1ubuntu1) ... 250s Selecting previously unselected package fonts-font-awesome. 250s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 250s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 250s Selecting previously unselected package fonts-glyphicons-halflings. 250s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 250s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 250s Selecting previously unselected package fonts-lmodern. 250s Preparing to unpack .../040-fonts-lmodern_2.005-1_all.deb ... 250s Unpacking fonts-lmodern (2.005-1) ... 250s Selecting previously unselected package fonts-mathjax. 250s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 250s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 251s Selecting previously unselected package libgfortran5:s390x. 251s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 251s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 251s Selecting previously unselected package libgfortran-13-dev:s390x. 251s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 251s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 251s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 251s Preparing to unpack .../044-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 251s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 251s Selecting previously unselected package gfortran-13. 251s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 251s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 251s Selecting previously unselected package gfortran-s390x-linux-gnu. 251s Preparing to unpack .../046-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 251s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 251s Selecting previously unselected package gfortran. 251s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 251s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 251s Selecting previously unselected package icu-devtools. 251s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_s390x.deb ... 251s Unpacking icu-devtools (74.2-1ubuntu1) ... 251s Selecting previously unselected package javascript-common. 251s Preparing to unpack .../049-javascript-common_11+nmu1_all.deb ... 251s Unpacking javascript-common (11+nmu1) ... 251s Selecting previously unselected package libio-string-perl. 251s Preparing to unpack .../050-libio-string-perl_1.08-4_all.deb ... 251s Unpacking libio-string-perl (1.08-4) ... 251s Selecting previously unselected package liblatex-tounicode-perl. 251s Preparing to unpack .../051-liblatex-tounicode-perl_0.54-2_all.deb ... 251s Unpacking liblatex-tounicode-perl (0.54-2) ... 251s Selecting previously unselected package libbibtex-parser-perl. 251s Preparing to unpack .../052-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 251s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 251s Selecting previously unselected package libblas3:s390x. 251s Preparing to unpack .../053-libblas3_3.12.0-3_s390x.deb ... 251s Unpacking libblas3:s390x (3.12.0-3) ... 251s Selecting previously unselected package libblas-dev:s390x. 251s Preparing to unpack .../054-libblas-dev_3.12.0-3_s390x.deb ... 251s Unpacking libblas-dev:s390x (3.12.0-3) ... 251s Selecting previously unselected package libboost1.83-dev:s390x. 251s Preparing to unpack .../055-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 251s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 253s Selecting previously unselected package libboost-dev:s390x. 253s Preparing to unpack .../056-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 253s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 253s Selecting previously unselected package libbz2-dev:s390x. 253s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 253s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 253s Selecting previously unselected package libpixman-1-0:s390x. 253s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_s390x.deb ... 253s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 253s Selecting previously unselected package libxcb-render0:s390x. 253s Preparing to unpack .../059-libxcb-render0_1.15-1_s390x.deb ... 253s Unpacking libxcb-render0:s390x (1.15-1) ... 253s Selecting previously unselected package libxcb-shm0:s390x. 253s Preparing to unpack .../060-libxcb-shm0_1.15-1_s390x.deb ... 253s Unpacking libxcb-shm0:s390x (1.15-1) ... 253s Selecting previously unselected package libxrender1:s390x. 253s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 253s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 253s Selecting previously unselected package libcairo2:s390x. 253s Preparing to unpack .../062-libcairo2_1.18.0-1_s390x.deb ... 253s Unpacking libcairo2:s390x (1.18.0-1) ... 253s Selecting previously unselected package libdatrie1:s390x. 253s Preparing to unpack .../063-libdatrie1_0.2.13-3_s390x.deb ... 253s Unpacking libdatrie1:s390x (0.2.13-3) ... 253s Selecting previously unselected package libdeflate0:s390x. 253s Preparing to unpack .../064-libdeflate0_1.19-1_s390x.deb ... 253s Unpacking libdeflate0:s390x (1.19-1) ... 253s Selecting previously unselected package libgraphite2-3:s390x. 253s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_s390x.deb ... 253s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 253s Selecting previously unselected package libharfbuzz0b:s390x. 253s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_s390x.deb ... 253s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 253s Selecting previously unselected package x11-common. 253s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 253s Unpacking x11-common (1:7.7+23ubuntu2) ... 253s Selecting previously unselected package libice6:s390x. 253s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_s390x.deb ... 253s Unpacking libice6:s390x (2:1.0.10-1build2) ... 253s Selecting previously unselected package libicu-dev:s390x. 253s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_s390x.deb ... 253s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 254s Selecting previously unselected package libjpeg-turbo8:s390x. 254s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 254s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 254s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 254s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 254s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 254s Selecting previously unselected package libjpeg8:s390x. 254s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_s390x.deb ... 254s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 254s Selecting previously unselected package libjpeg8-dev:s390x. 254s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 254s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 254s Selecting previously unselected package libjpeg-dev:s390x. 254s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 254s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 254s Selecting previously unselected package libjs-bootstrap. 254s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 254s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 254s Selecting previously unselected package libjs-popper.js. 254s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6_all.deb ... 254s Unpacking libjs-popper.js (1.16.1+ds-6) ... 254s Selecting previously unselected package libjs-bootstrap4. 254s Preparing to unpack .../077-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 254s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 254s Selecting previously unselected package libjs-d3. 254s Preparing to unpack .../078-libjs-d3_3.5.17-4_all.deb ... 254s Unpacking libjs-d3 (3.5.17-4) ... 254s Selecting previously unselected package libjs-es5-shim. 254s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ... 254s Unpacking libjs-es5-shim (4.6.7-2) ... 254s Selecting previously unselected package libjs-highlight.js. 254s Preparing to unpack .../080-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 254s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 254s Selecting previously unselected package libjs-jquery. 254s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 254s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 254s Selecting previously unselected package libjs-jquery-datatables. 254s Preparing to unpack .../082-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 254s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 254s Selecting previously unselected package libjs-sifter.js. 254s Preparing to unpack .../083-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 254s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 254s Selecting previously unselected package libjs-microplugin.js. 254s Preparing to unpack .../084-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 254s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 254s Selecting previously unselected package libjs-jquery-selectize.js. 254s Preparing to unpack .../085-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 254s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 254s Selecting previously unselected package libjs-jquery-ui. 254s Preparing to unpack .../086-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 254s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 254s Selecting previously unselected package libjs-json. 254s Preparing to unpack .../087-libjs-json_0~20221030+~1.0.8-1_all.deb ... 254s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 254s Selecting previously unselected package libjs-lunr. 254s Preparing to unpack .../088-libjs-lunr_2.3.9~dfsg-2_all.deb ... 254s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 254s Selecting previously unselected package libjs-prettify. 254s Preparing to unpack .../089-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 254s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 254s Selecting previously unselected package libkpathsea6:s390x. 254s Preparing to unpack .../090-libkpathsea6_2023.20230311.66589-9_s390x.deb ... 254s Unpacking libkpathsea6:s390x (2023.20230311.66589-9) ... 254s Selecting previously unselected package liblapack3:s390x. 254s Preparing to unpack .../091-liblapack3_3.12.0-3_s390x.deb ... 254s Unpacking liblapack3:s390x (3.12.0-3) ... 254s Selecting previously unselected package liblapack-dev:s390x. 254s Preparing to unpack .../092-liblapack-dev_3.12.0-3_s390x.deb ... 254s Unpacking liblapack-dev:s390x (3.12.0-3) ... 255s Selecting previously unselected package liblua5.4-0:s390x. 255s Preparing to unpack .../093-liblua5.4-0_5.4.6-3_s390x.deb ... 255s Unpacking liblua5.4-0:s390x (5.4.6-3) ... 255s Selecting previously unselected package libncurses-dev:s390x. 255s Preparing to unpack .../094-libncurses-dev_6.4+20240113-1ubuntu1_s390x.deb ... 255s Unpacking libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 255s Selecting previously unselected package libthai-data. 255s Preparing to unpack .../095-libthai-data_0.1.29-2_all.deb ... 255s Unpacking libthai-data (0.1.29-2) ... 255s Selecting previously unselected package libthai0:s390x. 255s Preparing to unpack .../096-libthai0_0.1.29-2_s390x.deb ... 255s Unpacking libthai0:s390x (0.1.29-2) ... 255s Selecting previously unselected package libpango-1.0-0:s390x. 255s Preparing to unpack .../097-libpango-1.0-0_1.51.0+ds-4_s390x.deb ... 255s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ... 255s Selecting previously unselected package libpangoft2-1.0-0:s390x. 255s Preparing to unpack .../098-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ... 255s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 255s Selecting previously unselected package libpangocairo-1.0-0:s390x. 255s Preparing to unpack .../099-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 255s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 255s Selecting previously unselected package libpaper1:s390x. 255s Preparing to unpack .../100-libpaper1_1.1.29_s390x.deb ... 255s Unpacking libpaper1:s390x (1.1.29) ... 255s Selecting previously unselected package libpaper-utils. 255s Preparing to unpack .../101-libpaper-utils_1.1.29_s390x.deb ... 255s Unpacking libpaper-utils (1.1.29) ... 255s Selecting previously unselected package libpcre2-16-0:s390x. 255s Preparing to unpack .../102-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ... 255s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ... 255s Selecting previously unselected package libpcre2-32-0:s390x. 255s Preparing to unpack .../103-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ... 255s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ... 255s Selecting previously unselected package libpcre2-posix3:s390x. 255s Preparing to unpack .../104-libpcre2-posix3_10.42-4ubuntu1_s390x.deb ... 255s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ... 255s Selecting previously unselected package libpcre2-dev:s390x. 255s Preparing to unpack .../105-libpcre2-dev_10.42-4ubuntu1_s390x.deb ... 255s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ... 255s Selecting previously unselected package libpkgconf3:s390x. 255s Preparing to unpack .../106-libpkgconf3_1.8.1-2_s390x.deb ... 255s Unpacking libpkgconf3:s390x (1.8.1-2) ... 255s Selecting previously unselected package zlib1g-dev:s390x. 255s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 255s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 255s Selecting previously unselected package libpng-dev:s390x. 255s Preparing to unpack .../108-libpng-dev_1.6.43-1_s390x.deb ... 255s Unpacking libpng-dev:s390x (1.6.43-1) ... 255s Selecting previously unselected package libpotrace0:s390x. 255s Preparing to unpack .../109-libpotrace0_1.16-2_s390x.deb ... 255s Unpacking libpotrace0:s390x (1.16-2) ... 255s Selecting previously unselected package libptexenc1:s390x. 255s Preparing to unpack .../110-libptexenc1_2023.20230311.66589-9_s390x.deb ... 255s Unpacking libptexenc1:s390x (2023.20230311.66589-9) ... 255s Selecting previously unselected package libreadline-dev:s390x. 255s Preparing to unpack .../111-libreadline-dev_8.2-3_s390x.deb ... 255s Unpacking libreadline-dev:s390x (8.2-3) ... 255s Selecting previously unselected package libsharpyuv0:s390x. 255s Preparing to unpack .../112-libsharpyuv0_1.3.2-0.4_s390x.deb ... 255s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 255s Selecting previously unselected package libsm6:s390x. 255s Preparing to unpack .../113-libsm6_2%3a1.2.3-1build2_s390x.deb ... 255s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 255s Selecting previously unselected package libsynctex2:s390x. 255s Preparing to unpack .../114-libsynctex2_2023.20230311.66589-9_s390x.deb ... 255s Unpacking libsynctex2:s390x (2023.20230311.66589-9) ... 255s Selecting previously unselected package libtcl8.6:s390x. 255s Preparing to unpack .../115-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 255s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 255s Selecting previously unselected package libteckit0:s390x. 255s Preparing to unpack .../116-libteckit0_2.5.12+ds1-1_s390x.deb ... 255s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 255s Selecting previously unselected package libtexlua53-5:s390x. 255s Preparing to unpack .../117-libtexlua53-5_2023.20230311.66589-9_s390x.deb ... 255s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9) ... 255s Selecting previously unselected package libjbig0:s390x. 255s Preparing to unpack .../118-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 255s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 255s Selecting previously unselected package libwebp7:s390x. 255s Preparing to unpack .../119-libwebp7_1.3.2-0.4_s390x.deb ... 255s Unpacking libwebp7:s390x (1.3.2-0.4) ... 255s Selecting previously unselected package libtiff6:s390x. 255s Preparing to unpack .../120-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 255s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 255s Selecting previously unselected package libxft2:s390x. 255s Preparing to unpack .../121-libxft2_2.3.6-1_s390x.deb ... 255s Unpacking libxft2:s390x (2.3.6-1) ... 255s Selecting previously unselected package libxss1:s390x. 255s Preparing to unpack .../122-libxss1_1%3a1.2.3-1build2_s390x.deb ... 255s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 255s Selecting previously unselected package libtk8.6:s390x. 255s Preparing to unpack .../123-libtk8.6_8.6.13-2_s390x.deb ... 255s Unpacking libtk8.6:s390x (8.6.13-2) ... 255s Selecting previously unselected package libxt6:s390x. 255s Preparing to unpack .../124-libxt6_1%3a1.2.1-1.1_s390x.deb ... 255s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 255s Selecting previously unselected package libxmu6:s390x. 255s Preparing to unpack .../125-libxmu6_2%3a1.1.3-3_s390x.deb ... 255s Unpacking libxmu6:s390x (2:1.1.3-3) ... 255s Selecting previously unselected package libxpm4:s390x. 255s Preparing to unpack .../126-libxpm4_1%3a3.5.17-1_s390x.deb ... 255s Unpacking libxpm4:s390x (1:3.5.17-1) ... 255s Selecting previously unselected package libxaw7:s390x. 255s Preparing to unpack .../127-libxaw7_2%3a1.0.14-1_s390x.deb ... 255s Unpacking libxaw7:s390x (2:1.0.14-1) ... 255s Selecting previously unselected package libxi6:s390x. 255s Preparing to unpack .../128-libxi6_2%3a1.8.1-1_s390x.deb ... 255s Unpacking libxi6:s390x (2:1.8.1-1) ... 255s Selecting previously unselected package libzzip-0-13:s390x. 255s Preparing to unpack .../129-libzzip-0-13_0.13.72+dfsg.1-1.1_s390x.deb ... 255s Unpacking libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 255s Selecting previously unselected package node-bootstrap-sass. 255s Preparing to unpack .../130-node-bootstrap-sass_3.4.3-2_all.deb ... 255s Unpacking node-bootstrap-sass (3.4.3-2) ... 255s Selecting previously unselected package node-html5shiv. 255s Preparing to unpack .../131-node-html5shiv_3.7.3+dfsg-5_all.deb ... 255s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 255s Selecting previously unselected package node-normalize.css. 255s Preparing to unpack .../132-node-normalize.css_8.0.1-5_all.deb ... 255s Unpacking node-normalize.css (8.0.1-5) ... 255s Selecting previously unselected package pandoc-data. 255s Preparing to unpack .../133-pandoc-data_3.1.3-1_all.deb ... 255s Unpacking pandoc-data (3.1.3-1) ... 255s Selecting previously unselected package pandoc. 255s Preparing to unpack .../134-pandoc_3.1.3+ds-2_s390x.deb ... 255s Unpacking pandoc (3.1.3+ds-2) ... 257s Selecting previously unselected package pkgconf-bin. 257s Preparing to unpack .../135-pkgconf-bin_1.8.1-2_s390x.deb ... 257s Unpacking pkgconf-bin (1.8.1-2) ... 257s Selecting previously unselected package pkgconf:s390x. 257s Preparing to unpack .../136-pkgconf_1.8.1-2_s390x.deb ... 257s Unpacking pkgconf:s390x (1.8.1-2) ... 257s Selecting previously unselected package pkg-config:s390x. 257s Preparing to unpack .../137-pkg-config_1.8.1-2_s390x.deb ... 257s Unpacking pkg-config:s390x (1.8.1-2) ... 257s Selecting previously unselected package zip. 257s Preparing to unpack .../138-zip_3.0-13_s390x.deb ... 257s Unpacking zip (3.0-13) ... 257s Selecting previously unselected package unzip. 257s Preparing to unpack .../139-unzip_6.0-28ubuntu3_s390x.deb ... 257s Unpacking unzip (6.0-28ubuntu3) ... 257s Selecting previously unselected package xdg-utils. 257s Preparing to unpack .../140-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 257s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 257s Selecting previously unselected package r-base-core. 257s Preparing to unpack .../141-r-base-core_4.3.2-1build1_s390x.deb ... 257s Unpacking r-base-core (4.3.2-1build1) ... 258s Selecting previously unselected package liblzma-dev:s390x. 258s Preparing to unpack .../142-liblzma-dev_5.4.5-0.3_s390x.deb ... 258s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 258s Selecting previously unselected package r-base-dev. 258s Preparing to unpack .../143-r-base-dev_4.3.2-1build1_all.deb ... 258s Unpacking r-base-dev (4.3.2-1build1) ... 258s Selecting previously unselected package pkg-r-autopkgtest. 258s Preparing to unpack .../144-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 258s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 258s Selecting previously unselected package r-bioc-biocgenerics. 258s Preparing to unpack .../145-r-bioc-biocgenerics_0.48.1-2_all.deb ... 258s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 258s Selecting previously unselected package r-bioc-biobase. 258s Preparing to unpack .../146-r-bioc-biobase_2.62.0-1_s390x.deb ... 258s Unpacking r-bioc-biobase (2.62.0-1) ... 258s Selecting previously unselected package r-bioc-s4vectors. 258s Preparing to unpack .../147-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 258s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 258s Selecting previously unselected package r-bioc-iranges. 258s Preparing to unpack .../148-r-bioc-iranges_2.36.0-1_s390x.deb ... 258s Unpacking r-bioc-iranges (2.36.0-1) ... 258s Selecting previously unselected package r-cran-dbi. 258s Preparing to unpack .../149-r-cran-dbi_1.2.2-1_all.deb ... 258s Unpacking r-cran-dbi (1.2.2-1) ... 258s Selecting previously unselected package r-cran-bit. 258s Preparing to unpack .../150-r-cran-bit_4.0.5-1_s390x.deb ... 258s Unpacking r-cran-bit (4.0.5-1) ... 258s Selecting previously unselected package r-cran-bit64. 258s Preparing to unpack .../151-r-cran-bit64_4.0.5-1_s390x.deb ... 258s Unpacking r-cran-bit64 (4.0.5-1) ... 258s Selecting previously unselected package r-cran-rlang. 258s Preparing to unpack .../152-r-cran-rlang_1.1.3-1_s390x.deb ... 258s Unpacking r-cran-rlang (1.1.3-1) ... 258s Selecting previously unselected package r-cran-cli. 258s Preparing to unpack .../153-r-cran-cli_3.6.2-1_s390x.deb ... 258s Unpacking r-cran-cli (3.6.2-1) ... 258s Selecting previously unselected package r-cran-glue. 258s Preparing to unpack .../154-r-cran-glue_1.7.0-1_s390x.deb ... 258s Unpacking r-cran-glue (1.7.0-1) ... 258s Selecting previously unselected package r-cran-lifecycle. 258s Preparing to unpack .../155-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 258s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 258s Selecting previously unselected package r-cran-vctrs. 258s Preparing to unpack .../156-r-cran-vctrs_0.6.5-1_s390x.deb ... 258s Unpacking r-cran-vctrs (0.6.5-1) ... 258s Selecting previously unselected package r-cran-blob. 258s Preparing to unpack .../157-r-cran-blob_1.2.4-1_all.deb ... 258s Unpacking r-cran-blob (1.2.4-1) ... 258s Selecting previously unselected package r-cran-fastmap. 258s Preparing to unpack .../158-r-cran-fastmap_1.1.1-1_s390x.deb ... 258s Unpacking r-cran-fastmap (1.1.1-1) ... 258s Selecting previously unselected package r-cran-cachem. 258s Preparing to unpack .../159-r-cran-cachem_1.0.8-1_s390x.deb ... 258s Unpacking r-cran-cachem (1.0.8-1) ... 258s Selecting previously unselected package r-cran-memoise. 258s Preparing to unpack .../160-r-cran-memoise_2.0.1-1_all.deb ... 258s Unpacking r-cran-memoise (2.0.1-1) ... 258s Selecting previously unselected package r-cran-pkgconfig. 258s Preparing to unpack .../161-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 258s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 258s Selecting previously unselected package r-cran-plogr. 258s Preparing to unpack .../162-r-cran-plogr_0.2.0-3build1_all.deb ... 258s Unpacking r-cran-plogr (0.2.0-3build1) ... 258s Selecting previously unselected package r-cran-cpp11. 258s Preparing to unpack .../163-r-cran-cpp11_0.4.7-1_all.deb ... 258s Unpacking r-cran-cpp11 (0.4.7-1) ... 258s Selecting previously unselected package r-cran-rsqlite. 258s Preparing to unpack .../164-r-cran-rsqlite_2.3.4-1_s390x.deb ... 258s Unpacking r-cran-rsqlite (2.3.4-1) ... 258s Selecting previously unselected package r-cran-curl. 258s Preparing to unpack .../165-r-cran-curl_5.2.0+dfsg-1_s390x.deb ... 258s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 258s Selecting previously unselected package r-cran-jsonlite. 258s Preparing to unpack .../166-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 258s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 258s Selecting previously unselected package r-cran-mime. 258s Preparing to unpack .../167-r-cran-mime_0.12-1_s390x.deb ... 258s Unpacking r-cran-mime (0.12-1) ... 258s Selecting previously unselected package r-cran-sys. 258s Preparing to unpack .../168-r-cran-sys_3.4.2-1_s390x.deb ... 258s Unpacking r-cran-sys (3.4.2-1) ... 258s Selecting previously unselected package r-cran-askpass. 258s Preparing to unpack .../169-r-cran-askpass_1.2.0-1_s390x.deb ... 258s Unpacking r-cran-askpass (1.2.0-1) ... 258s Selecting previously unselected package r-cran-openssl. 258s Preparing to unpack .../170-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ... 258s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 258s Selecting previously unselected package r-cran-r6. 258s Preparing to unpack .../171-r-cran-r6_2.5.1-1_all.deb ... 258s Unpacking r-cran-r6 (2.5.1-1) ... 258s Selecting previously unselected package r-cran-httr. 258s Preparing to unpack .../172-r-cran-httr_1.4.7+dfsg-1_all.deb ... 258s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 258s Selecting previously unselected package r-cran-png. 258s Preparing to unpack .../173-r-cran-png_0.1-8-1_s390x.deb ... 259s Unpacking r-cran-png (0.1-8-1) ... 259s Selecting previously unselected package r-bioc-zlibbioc. 259s Preparing to unpack .../174-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 259s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 259s Selecting previously unselected package r-bioc-xvector. 259s Preparing to unpack .../175-r-bioc-xvector_0.42.0-1_s390x.deb ... 259s Unpacking r-bioc-xvector (0.42.0-1) ... 259s Selecting previously unselected package r-cran-bitops. 259s Preparing to unpack .../176-r-cran-bitops_1.0-7-1_s390x.deb ... 259s Unpacking r-cran-bitops (1.0-7-1) ... 259s Selecting previously unselected package r-cran-rcurl. 259s Preparing to unpack .../177-r-cran-rcurl_1.98-1.14+dfsg-1_s390x.deb ... 259s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 259s Selecting previously unselected package r-bioc-genomeinfodbdata. 259s Preparing to unpack .../178-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 259s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 259s Selecting previously unselected package r-bioc-genomeinfodb. 259s Preparing to unpack .../179-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 259s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 259s Selecting previously unselected package r-cran-crayon. 259s Preparing to unpack .../180-r-cran-crayon_1.5.2-1_all.deb ... 259s Unpacking r-cran-crayon (1.5.2-1) ... 259s Selecting previously unselected package r-bioc-biostrings. 259s Preparing to unpack .../181-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 259s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 259s Selecting previously unselected package r-bioc-keggrest. 259s Preparing to unpack .../182-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 259s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 259s Selecting previously unselected package r-bioc-annotationdbi. 259s Preparing to unpack .../183-r-bioc-annotationdbi_1.64.1-1_all.deb ... 259s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 259s Selecting previously unselected package r-cran-xml. 259s Preparing to unpack .../184-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 259s Unpacking r-cran-xml (3.99-0.16.1-1) ... 259s Selecting previously unselected package r-cran-xtable. 259s Preparing to unpack .../185-r-cran-xtable_1%3a1.8-4-2_all.deb ... 259s Unpacking r-cran-xtable (1:1.8-4-2) ... 259s Selecting previously unselected package r-bioc-annotate. 259s Preparing to unpack .../186-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 259s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 259s Selecting previously unselected package r-cran-generics. 259s Preparing to unpack .../187-r-cran-generics_0.1.3-1_all.deb ... 259s Unpacking r-cran-generics (0.1.3-1) ... 259s Selecting previously unselected package r-cran-magrittr. 259s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_s390x.deb ... 259s Unpacking r-cran-magrittr (2.0.3-1) ... 259s Selecting previously unselected package r-cran-fansi. 259s Preparing to unpack .../189-r-cran-fansi_1.0.5-1_s390x.deb ... 259s Unpacking r-cran-fansi (1.0.5-1) ... 259s Selecting previously unselected package r-cran-utf8. 259s Preparing to unpack .../190-r-cran-utf8_1.2.4-1_s390x.deb ... 259s Unpacking r-cran-utf8 (1.2.4-1) ... 259s Selecting previously unselected package r-cran-pillar. 259s Preparing to unpack .../191-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 259s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 259s Selecting previously unselected package r-cran-tibble. 259s Preparing to unpack .../192-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 259s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 259s Selecting previously unselected package r-cran-withr. 259s Preparing to unpack .../193-r-cran-withr_2.5.0-1_all.deb ... 259s Unpacking r-cran-withr (2.5.0-1) ... 259s Selecting previously unselected package r-cran-tidyselect. 259s Preparing to unpack .../194-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 259s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 259s Selecting previously unselected package r-cran-dplyr. 259s Preparing to unpack .../195-r-cran-dplyr_1.1.4-1_s390x.deb ... 259s Unpacking r-cran-dplyr (1.1.4-1) ... 259s Selecting previously unselected package r-cran-purrr. 259s Preparing to unpack .../196-r-cran-purrr_1.0.2-1_s390x.deb ... 259s Unpacking r-cran-purrr (1.0.2-1) ... 259s Selecting previously unselected package r-cran-stringi. 259s Preparing to unpack .../197-r-cran-stringi_1.8.3-1_s390x.deb ... 259s Unpacking r-cran-stringi (1.8.3-1) ... 259s Selecting previously unselected package r-cran-stringr. 259s Preparing to unpack .../198-r-cran-stringr_1.5.1-1_all.deb ... 259s Unpacking r-cran-stringr (1.5.1-1) ... 259s Selecting previously unselected package r-cran-tidyr. 259s Preparing to unpack .../199-r-cran-tidyr_1.3.1-1_s390x.deb ... 259s Unpacking r-cran-tidyr (1.3.1-1) ... 260s Selecting previously unselected package r-cran-dbplyr. 260s Preparing to unpack .../200-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 260s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 260s Selecting previously unselected package r-cran-filelock. 260s Preparing to unpack .../201-r-cran-filelock_1.0.3-1_s390x.deb ... 260s Unpacking r-cran-filelock (1.0.3-1) ... 260s Selecting previously unselected package r-bioc-biocfilecache. 260s Preparing to unpack .../202-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 260s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 260s Selecting previously unselected package r-bioc-biocio. 260s Preparing to unpack .../203-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 260s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 260s Selecting previously unselected package r-cran-formatr. 260s Preparing to unpack .../204-r-cran-formatr_1.14-1_all.deb ... 260s Unpacking r-cran-formatr (1.14-1) ... 260s Selecting previously unselected package r-cran-lambda.r. 260s Preparing to unpack .../205-r-cran-lambda.r_1.2.4-2build1_all.deb ... 260s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 260s Selecting previously unselected package r-cran-futile.options. 260s Preparing to unpack .../206-r-cran-futile.options_1.0.1-3build1_all.deb ... 260s Unpacking r-cran-futile.options (1.0.1-3build1) ... 260s Selecting previously unselected package r-cran-futile.logger. 260s Preparing to unpack .../207-r-cran-futile.logger_1.4.3-4build1_all.deb ... 260s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 260s Selecting previously unselected package r-cran-snow. 260s Preparing to unpack .../208-r-cran-snow_1%3a0.4.4-2_all.deb ... 260s Unpacking r-cran-snow (1:0.4.4-2) ... 260s Selecting previously unselected package r-cran-codetools. 260s Preparing to unpack .../209-r-cran-codetools_0.2-19-1_all.deb ... 260s Unpacking r-cran-codetools (0.2-19-1) ... 260s Selecting previously unselected package r-cran-bh. 260s Preparing to unpack .../210-r-cran-bh_1.84.0-1_all.deb ... 260s Unpacking r-cran-bh (1.84.0-1) ... 260s Selecting previously unselected package r-bioc-biocparallel. 260s Preparing to unpack .../211-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 260s Unpacking r-bioc-biocparallel (1.36.0-1) ... 260s Selecting previously unselected package r-cran-base64enc. 260s Preparing to unpack .../212-r-cran-base64enc_0.1-3-3_s390x.deb ... 260s Unpacking r-cran-base64enc (0.1-3-3) ... 260s Selecting previously unselected package r-cran-digest. 260s Preparing to unpack .../213-r-cran-digest_0.6.34-1_s390x.deb ... 260s Unpacking r-cran-digest (0.6.34-1) ... 260s Selecting previously unselected package r-cran-ellipsis. 260s Preparing to unpack .../214-r-cran-ellipsis_0.3.2-2_s390x.deb ... 260s Unpacking r-cran-ellipsis (0.3.2-2) ... 260s Selecting previously unselected package r-cran-htmltools. 260s Preparing to unpack .../215-r-cran-htmltools_0.5.7-1_s390x.deb ... 260s Unpacking r-cran-htmltools (0.5.7-1) ... 260s Selecting previously unselected package r-cran-evaluate. 260s Preparing to unpack .../216-r-cran-evaluate_0.23-1_all.deb ... 260s Unpacking r-cran-evaluate (0.23-1) ... 260s Selecting previously unselected package r-cran-xfun. 260s Preparing to unpack .../217-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 260s Unpacking r-cran-xfun (0.41+dfsg-1) ... 260s Selecting previously unselected package r-cran-highr. 260s Preparing to unpack .../218-r-cran-highr_0.10+dfsg-1_all.deb ... 260s Unpacking r-cran-highr (0.10+dfsg-1) ... 260s Selecting previously unselected package r-cran-yaml. 260s Preparing to unpack .../219-r-cran-yaml_2.3.8-1_s390x.deb ... 260s Unpacking r-cran-yaml (2.3.8-1) ... 260s Selecting previously unselected package libjs-mathjax. 260s Preparing to unpack .../220-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 260s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 261s Selecting previously unselected package r-cran-knitr. 261s Preparing to unpack .../221-r-cran-knitr_1.45+dfsg-1_all.deb ... 261s Unpacking r-cran-knitr (1.45+dfsg-1) ... 261s Selecting previously unselected package r-cran-jquerylib. 261s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 261s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 261s Selecting previously unselected package r-cran-fs. 261s Preparing to unpack .../223-r-cran-fs_1.6.3+dfsg-1_s390x.deb ... 261s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 261s Selecting previously unselected package r-cran-rappdirs. 261s Preparing to unpack .../224-r-cran-rappdirs_0.3.3-1_s390x.deb ... 261s Unpacking r-cran-rappdirs (0.3.3-1) ... 261s Selecting previously unselected package r-cran-sass. 261s Preparing to unpack .../225-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 261s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 261s Selecting previously unselected package r-cran-bslib. 261s Preparing to unpack .../226-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 261s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 261s Selecting previously unselected package r-cran-fontawesome. 261s Preparing to unpack .../227-r-cran-fontawesome_0.5.2-1_all.deb ... 261s Unpacking r-cran-fontawesome (0.5.2-1) ... 261s Selecting previously unselected package r-cran-tinytex. 261s Preparing to unpack .../228-r-cran-tinytex_0.49-1_all.deb ... 261s Unpacking r-cran-tinytex (0.49-1) ... 261s Selecting previously unselected package libjs-modernizr. 261s Preparing to unpack .../229-libjs-modernizr_2.6.2+ds1-5_all.deb ... 261s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 261s Selecting previously unselected package r-cran-littler. 261s Preparing to unpack .../230-r-cran-littler_0.3.19-1_s390x.deb ... 261s Unpacking r-cran-littler (0.3.19-1) ... 261s Selecting previously unselected package r-cran-pkgkitten. 261s Preparing to unpack .../231-r-cran-pkgkitten_0.2.3-1_all.deb ... 261s Unpacking r-cran-pkgkitten (0.2.3-1) ... 261s Selecting previously unselected package r-cran-rcpp. 262s Preparing to unpack .../232-r-cran-rcpp_1.0.12-1_s390x.deb ... 262s Unpacking r-cran-rcpp (1.0.12-1) ... 262s Selecting previously unselected package r-cran-later. 262s Preparing to unpack .../233-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 262s Unpacking r-cran-later (1.3.2+dfsg-1) ... 262s Selecting previously unselected package r-cran-promises. 262s Preparing to unpack .../234-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 262s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 262s Selecting previously unselected package r-cran-httpuv. 262s Preparing to unpack .../235-r-cran-httpuv_1.6.14+dfsg-1_s390x.deb ... 262s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 262s Selecting previously unselected package r-cran-sourcetools. 262s Preparing to unpack .../236-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 262s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 262s Selecting previously unselected package r-cran-commonmark. 262s Preparing to unpack .../237-r-cran-commonmark_1.9.1-1_s390x.deb ... 262s Unpacking r-cran-commonmark (1.9.1-1) ... 262s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 262s Preparing to unpack .../238-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 262s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 262s Selecting previously unselected package r-cran-shiny. 262s Preparing to unpack .../239-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 262s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 262s Selecting previously unselected package r-cran-rmarkdown. 262s Preparing to unpack .../240-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 262s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 262s Selecting previously unselected package r-cran-bookdown. 262s Preparing to unpack .../241-r-cran-bookdown_0.37+dfsg-1_all.deb ... 262s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 262s Selecting previously unselected package r-cran-biocmanager. 262s Preparing to unpack .../242-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 262s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 262s Selecting previously unselected package tex-common. 262s Preparing to unpack .../243-tex-common_6.18_all.deb ... 262s Unpacking tex-common (6.18) ... 262s Selecting previously unselected package t1utils. 262s Preparing to unpack .../244-t1utils_1.41-4build2_s390x.deb ... 262s Unpacking t1utils (1.41-4build2) ... 262s Selecting previously unselected package texlive-binaries. 262s Preparing to unpack .../245-texlive-binaries_2023.20230311.66589-9_s390x.deb ... 262s Unpacking texlive-binaries (2023.20230311.66589-9) ... 262s Selecting previously unselected package texlive-base. 262s Preparing to unpack .../246-texlive-base_2023.20240207-1_all.deb ... 262s Unpacking texlive-base (2023.20240207-1) ... 265s Selecting previously unselected package texlive-latex-base. 265s Preparing to unpack .../247-texlive-latex-base_2023.20240207-1_all.deb ... 265s Unpacking texlive-latex-base (2023.20240207-1) ... 265s Selecting previously unselected package texlive-bibtex-extra. 265s Preparing to unpack .../248-texlive-bibtex-extra_2023.20240207-1_all.deb ... 265s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 272s Selecting previously unselected package r-bioc-biocstyle. 272s Preparing to unpack .../249-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 272s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 272s Selecting previously unselected package r-cran-hms. 272s Preparing to unpack .../250-r-cran-hms_1.1.3-1_all.deb ... 272s Unpacking r-cran-hms (1.1.3-1) ... 272s Selecting previously unselected package r-cran-prettyunits. 272s Preparing to unpack .../251-r-cran-prettyunits_1.2.0-1_all.deb ... 272s Unpacking r-cran-prettyunits (1.2.0-1) ... 272s Selecting previously unselected package r-cran-progress. 272s Preparing to unpack .../252-r-cran-progress_1.2.3-1_all.deb ... 272s Unpacking r-cran-progress (1.2.3-1) ... 272s Selecting previously unselected package r-cran-xml2. 272s Preparing to unpack .../253-r-cran-xml2_1.3.6-1_s390x.deb ... 272s Unpacking r-cran-xml2 (1.3.6-1) ... 272s Selecting previously unselected package r-bioc-biomart. 272s Preparing to unpack .../254-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 272s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 272s Selecting previously unselected package r-bioc-genomicranges. 272s Preparing to unpack .../255-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 272s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 272s Selecting previously unselected package r-bioc-rhtslib. 272s Preparing to unpack .../256-r-bioc-rhtslib_2.4.1+dfsg-1_s390x.deb ... 272s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 273s Selecting previously unselected package r-bioc-rsamtools. 273s Preparing to unpack .../257-r-bioc-rsamtools_2.18.0+dfsg-1_s390x.deb ... 273s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 273s Selecting previously unselected package r-cran-matrixstats. 273s Preparing to unpack .../258-r-cran-matrixstats_1.2.0-1_s390x.deb ... 273s Unpacking r-cran-matrixstats (1.2.0-1) ... 273s Selecting previously unselected package r-bioc-matrixgenerics. 273s Preparing to unpack .../259-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 273s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 273s Selecting previously unselected package r-cran-lattice. 273s Preparing to unpack .../260-r-cran-lattice_0.22-5-1_s390x.deb ... 273s Unpacking r-cran-lattice (0.22-5-1) ... 273s Selecting previously unselected package r-cran-matrix. 273s Preparing to unpack .../261-r-cran-matrix_1.6-5-1_s390x.deb ... 273s Unpacking r-cran-matrix (1.6-5-1) ... 273s Selecting previously unselected package r-cran-abind. 273s Preparing to unpack .../262-r-cran-abind_1.4-5-2_all.deb ... 273s Unpacking r-cran-abind (1.4-5-2) ... 273s Selecting previously unselected package r-bioc-s4arrays. 273s Preparing to unpack .../263-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 273s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 273s Selecting previously unselected package r-bioc-sparsearray. 273s Preparing to unpack .../264-r-bioc-sparsearray_1.2.4+dfsg-1_s390x.deb ... 273s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 273s Selecting previously unselected package r-bioc-delayedarray. 273s Preparing to unpack .../265-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ... 273s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 273s Selecting previously unselected package r-bioc-summarizedexperiment. 273s Preparing to unpack .../266-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 273s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 273s Selecting previously unselected package r-bioc-genomicalignments. 273s Preparing to unpack .../267-r-bioc-genomicalignments_1.38.2-1_s390x.deb ... 273s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 273s Selecting previously unselected package r-cran-rjson. 273s Preparing to unpack .../268-r-cran-rjson_0.2.21-1_s390x.deb ... 273s Unpacking r-cran-rjson (0.2.21-1) ... 273s Selecting previously unselected package r-cran-restfulr. 273s Preparing to unpack .../269-r-cran-restfulr_0.0.15-1_s390x.deb ... 273s Unpacking r-cran-restfulr (0.0.15-1) ... 273s Selecting previously unselected package r-bioc-rtracklayer. 273s Preparing to unpack .../270-r-bioc-rtracklayer_1.62.0-1_s390x.deb ... 273s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 273s Selecting previously unselected package r-bioc-bsgenome. 273s Preparing to unpack .../271-r-bioc-bsgenome_1.70.2-1_all.deb ... 273s Unpacking r-bioc-bsgenome (1.70.2-1) ... 273s Selecting previously unselected package r-cran-survival. 273s Preparing to unpack .../272-r-cran-survival_3.5-8-1_s390x.deb ... 273s Unpacking r-cran-survival (3.5-8-1) ... 273s Selecting previously unselected package r-bioc-genefilter. 273s Preparing to unpack .../273-r-bioc-genefilter_1.84.0-1_s390x.deb ... 273s Unpacking r-bioc-genefilter (1.84.0-1) ... 273s Selecting previously unselected package r-bioc-genomicfeatures. 273s Preparing to unpack .../274-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 273s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 273s Selecting previously unselected package r-bioc-variantannotation. 273s Preparing to unpack .../275-r-bioc-variantannotation_1.48.1-1build1_s390x.deb ... 273s Unpacking r-bioc-variantannotation (1.48.1-1build1) ... 273s Selecting previously unselected package r-bioc-genomicfiles. 273s Preparing to unpack .../276-r-bioc-genomicfiles_1.38.0+dfsg-1_all.deb ... 273s Unpacking r-bioc-genomicfiles (1.38.0+dfsg-1) ... 273s Selecting previously unselected package r-bioc-snpstats. 273s Preparing to unpack .../277-r-bioc-snpstats_1.52.0+dfsg-1_s390x.deb ... 273s Unpacking r-bioc-snpstats (1.52.0+dfsg-1) ... 274s Selecting previously unselected package r-cran-runit. 274s Preparing to unpack .../278-r-cran-runit_0.4.32-3_all.deb ... 274s Unpacking r-cran-runit (0.4.32-3) ... 274s Selecting previously unselected package autopkgtest-satdep. 274s Preparing to unpack .../279-1-autopkgtest-satdep.deb ... 274s Unpacking autopkgtest-satdep (0) ... 274s Setting up libjs-json (0~20221030+~1.0.8-1) ... 274s Setting up javascript-common (11+nmu1) ... 274s Setting up libgraphite2-3:s390x (1.3.14-2) ... 274s Setting up libpixman-1-0:s390x (0.42.2-1) ... 274s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 274s Setting up libpaper1:s390x (1.1.29) 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libjs-microplugin.js (0.0.3+dfsg-1.1) ... 274s Setting up libxcb-shm0:s390x (1.15-1) ... 274s Setting up libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 274s Setting up libpaper-utils (1.1.29) ... 274s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 274s Setting up libjs-modernizr (2.6.2+ds1-5) ... 274s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 274s Setting up libpcre2-16-0:s390x (10.42-4ubuntu1) ... 274s Setting up libjs-es5-shim (4.6.7-2) ... 274s Setting up tex-common (6.18) ... 274s update-language: texlive-base not installed and configured, doing nothing! 274s Setting up libio-string-perl (1.08-4) ... 274s Setting up zip (3.0-13) ... 274s Setting up libpcre2-32-0:s390x (10.42-4ubuntu1) ... 274s Setting up libblas3:s390x (3.12.0-3) ... 274s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 274s Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ... 274s Setting up 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(2023.20230311.66589-9) ... 277s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 277s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 277s Setting up build-essential (12.10ubuntu1) ... 277s Setting up r-cran-commonmark (1.9.1-1) ... 277s Setting up r-cran-r6 (2.5.1-1) ... 277s Setting up r-cran-pkgkitten (0.2.3-1) ... 277s Setting up texlive-base (2023.20240207-1) ... 277s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 278s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 278s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 278s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 278s Setting up r-cran-magrittr (2.0.3-1) ... 278s Setting up r-cran-rappdirs (0.3.3-1) ... 278s Setting up r-cran-filelock (1.0.3-1) ... 278s 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r-cran-tidyselect (1.2.0+dfsg-1) ... 279s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ... 279s Setting up texlive-bibtex-extra (2023.20240207-1) ... 279s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 279s Setting up r-cran-httr (1.4.7+dfsg-1) ... 279s Setting up r-cran-hms (1.1.3-1) ... 279s Setting up r-cran-memoise (2.0.1-1) ... 279s Setting up r-cran-promises (1.2.1+dfsg-1) ... 279s Setting up r-cran-purrr (1.0.2-1) ... 279s Setting up r-cran-blob (1.2.4-1) ... 279s Setting up r-cran-htmltools (0.5.7-1) ... 279s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 279s Setting up r-bioc-xvector (0.42.0-1) ... 279s Setting up r-cran-sass (0.4.8+dfsg-1) ... 279s Setting up r-cran-dplyr (1.1.4-1) ... 279s Setting up r-cran-rsqlite (2.3.4-1) ... 279s Setting up r-cran-progress (1.2.3-1) ... 279s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 279s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 279s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 279s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 279s Setting up r-cran-fontawesome (0.5.2-1) ... 279s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 279s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 279s Setting up r-cran-tidyr (1.3.1-1) ... 279s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 279s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 279s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 279s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 279s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 279s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 279s Setting up r-bioc-annotationdbi (1.64.1-1) ... 279s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 279s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 279s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 279s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 279s Setting up r-bioc-genefilter (1.84.0-1) ... 279s Setting up r-bioc-genomicalignments (1.38.2-1) ... 279s Setting up r-cran-bookdown (0.37+dfsg-1) ... 279s Setting up r-bioc-rtracklayer (1.62.0-1) ... 279s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 279s Setting up r-bioc-bsgenome (1.70.2-1) ... 279s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 279s Setting up r-bioc-variantannotation (1.48.1-1build1) ... 279s Setting up r-bioc-genomicfiles (1.38.0+dfsg-1) ... 279s Setting up autopkgtest-satdep (0) ... 279s Processing triggers for man-db (2.12.0-3) ... 279s Processing triggers for install-info (7.1-3) ... 279s Processing triggers for libc-bin (2.39-0ubuntu2) ... 279s Processing triggers for tex-common (6.18) ... 280s Running updmap-sys. This may take some time... done. 280s Running mktexlsr /var/lib/texmf ... done. 280s Building format(s) --all. 324s This may take some time... done. 331s (Reading database ... 101943 files and directories currently installed.) 331s Removing autopkgtest-satdep (0) ... 332s autopkgtest [19:02:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 332s autopkgtest [19:02:59]: test pkg-r-autopkgtest: [----------------------- 332s Test: Try to load the R library GenomicFiles 332s 332s R version 4.3.2 (2023-10-31) -- "Eye Holes" 332s Copyright (C) 2023 The R Foundation for Statistical Computing 332s Platform: s390x-ibm-linux-gnu (64-bit) 332s 332s R is free software and comes with ABSOLUTELY NO WARRANTY. 332s You are welcome to redistribute it under certain conditions. 332s Type 'license()' or 'licence()' for distribution details. 332s 332s R is a collaborative project with many contributors. 332s Type 'contributors()' for more information and 332s 'citation()' on how to cite R or R packages in publications. 332s 332s Type 'demo()' for some demos, 'help()' for on-line help, or 332s 'help.start()' for an HTML browser interface to help. 332s Type 'q()' to quit R. 332s 332s > library('GenomicFiles') 332s Loading required package: BiocGenerics 332s 332s Attaching package: ‘BiocGenerics’ 332s 332s The following objects are masked from ‘package:stats’: 332s 332s IQR, mad, sd, var, xtabs 332s 332s The following objects are masked from ‘package:base’: 332s 332s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 332s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 332s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 332s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 332s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 332s table, tapply, union, unique, unsplit, which.max, which.min 332s 332s Loading required package: MatrixGenerics 332s Loading required package: matrixStats 332s 332s Attaching package: ‘MatrixGenerics’ 332s 332s The following objects are masked from ‘package:matrixStats’: 332s 332s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 332s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 332s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 332s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 332s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 332s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 332s colWeightedMeans, colWeightedMedians, colWeightedSds, 332s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 332s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 332s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 332s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 332s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 332s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 332s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 332s rowWeightedSds, rowWeightedVars 332s 332s Loading required package: GenomicRanges 332s Loading required package: stats4 332s Loading required package: S4Vectors 333s 333s Attaching package: ‘S4Vectors’ 333s 333s The following object is masked from ‘package:utils’: 333s 333s findMatches 333s 333s The following objects are masked from ‘package:base’: 333s 333s expand.grid, I, unname 333s 333s Loading required package: IRanges 333s Loading required package: GenomeInfoDb 334s Loading required package: SummarizedExperiment 334s Loading required package: Biobase 334s Welcome to Bioconductor 334s 334s Vignettes contain introductory material; view with 334s 'browseVignettes()'. To cite Bioconductor, see 334s 'citation("Biobase")', and for packages 'citation("pkgname")'. 334s 334s 334s Attaching package: ‘Biobase’ 334s 334s The following object is masked from ‘package:MatrixGenerics’: 334s 334s rowMedians 334s 334s The following objects are masked from ‘package:matrixStats’: 334s 334s anyMissing, rowMedians 334s 337s Loading required package: BiocParallel 338s Loading required package: Rsamtools 338s Loading required package: Biostrings 338s Loading required package: XVector 338s 338s Attaching package: ‘Biostrings’ 338s 338s The following object is masked from ‘package:base’: 338s 338s strsplit 338s 339s Loading required package: rtracklayer 344s > 344s > 344s Other tests are currently unsupported! 344s They will be progressively added. 344s autopkgtest [19:03:11]: test pkg-r-autopkgtest: -----------------------] 345s pkg-r-autopkgtest PASS 345s autopkgtest [19:03:12]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 345s autopkgtest [19:03:12]: @@@@@@@@@@@@@@@@@@@@ summary 345s pkg-r-autopkgtest PASS 383s Creating nova instance adt-noble-s390x-r-bioc-genomicfiles-20240316-185727-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...