0s autopkgtest [18:32:02]: starting date and time: 2024-03-16 18:32:02+0000 0s autopkgtest [18:32:02]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:32:02]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.l_tia0ea/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-genomicfiles --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-3.secgroup --name adt-noble-s390x-r-bioc-genomicfiles-20240316-183201-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 265s autopkgtest [18:36:27]: testbed dpkg architecture: s390x 265s autopkgtest [18:36:27]: testbed apt version: 2.7.12 265s autopkgtest [18:36:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 266s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 267s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 267s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 267s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 267s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 267s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB] 267s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 267s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 267s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 267s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3752 kB] 268s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 268s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB] 268s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 269s Fetched 8760 kB in 3s (3445 kB/s) 270s Reading package lists... 272s Reading package lists... 272s Building dependency tree... 272s Reading state information... 272s Calculating upgrade... 272s The following packages will be REMOVED: 272s libssl3 272s The following NEW packages will be installed: 272s libssl3t64 272s The following packages have been kept back: 272s curl 272s The following packages will be upgraded: 272s openssl ubuntu-minimal ubuntu-standard 273s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 273s Need to get 2680 kB of archives. 273s After this operation, 23.6 kB of additional disk space will be used. 273s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 273s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 273s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB] 273s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB] 273s Fetched 2680 kB in 1s (3931 kB/s) 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 274s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 274s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 274s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 274s wget depends on libssl3 (>= 3.0.0). 274s tnftp depends on libssl3 (>= 3.0.0). 274s tcpdump depends on libssl3 (>= 3.0.0). 274s systemd-resolved depends on libssl3 (>= 3.0.0). 274s systemd depends on libssl3 (>= 3.0.0). 274s sudo depends on libssl3 (>= 3.0.0). 274s s390-tools depends on libssl3 (>= 3.0.0). 274s rsync depends on libssl3 (>= 3.0.0). 274s python3-cryptography depends on libssl3 (>= 3.0.0). 274s openssh-server depends on libssl3 (>= 3.0.10). 274s openssh-client depends on libssl3 (>= 3.0.10). 274s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 274s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 274s libssh-4:s390x depends on libssl3 (>= 3.0.0). 274s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 274s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 274s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 274s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 274s libnvme1 depends on libssl3 (>= 3.0.0). 274s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 274s libkmod2:s390x depends on libssl3 (>= 3.0.0). 274s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 274s libcurl4:s390x depends on libssl3 (>= 3.0.0). 274s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 274s kmod depends on libssl3 (>= 3.0.0). 274s dhcpcd-base depends on libssl3 (>= 3.0.0). 274s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 274s 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 274s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 274s Selecting previously unselected package libssl3t64:s390x. 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 274s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 274s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 274s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ... 274s Unpacking ubuntu-minimal (1.536) over (1.535) ... 274s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ... 274s Unpacking ubuntu-standard (1.536) over (1.535) ... 274s Setting up ubuntu-minimal (1.536) ... 274s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 274s Setting up ubuntu-standard (1.536) ... 274s Setting up openssl (3.0.13-0ubuntu1) ... 274s Processing triggers for man-db (2.12.0-3) ... 274s Processing triggers for libc-bin (2.39-0ubuntu2) ... 275s Reading package lists... 275s Building dependency tree... 275s Reading state information... 275s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 275s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 275s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 275s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 275s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 277s Reading package lists... 277s Reading package lists... 277s Building dependency tree... 277s Reading state information... 277s Calculating upgrade... 277s The following packages have been kept back: 277s curl 277s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 277s Reading package lists... 277s Building dependency tree... 277s Reading state information... 278s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 280s autopkgtest [18:36:42]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 280s autopkgtest [18:36:42]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicfiles 282s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (dsc) [2416 B] 282s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (tar) [291 kB] 282s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (diff) [5272 B] 282s gpgv: Signature made Fri Dec 1 10:41:34 2023 UTC 282s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 282s gpgv: issuer "tillea@rki.de" 282s gpgv: Can't check signature: No public key 282s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfiles_1.38.0+dfsg-1.dsc: no acceptable signature found 282s autopkgtest [18:36:44]: testing package r-bioc-genomicfiles version 1.38.0+dfsg-1 282s autopkgtest [18:36:44]: build not needed 283s autopkgtest [18:36:45]: test pkg-r-autopkgtest: preparing testbed 285s Reading package lists... 285s Building dependency tree... 285s Reading state information... 285s Starting pkgProblemResolver with broken count: 0 285s Starting 2 pkgProblemResolver with broken count: 0 285s Done 285s The following additional packages will be installed: 285s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl 285s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 285s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 285s g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 285s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 285s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 285s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 285s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 285s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 285s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 285s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl 285s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 285s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 285s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 285s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 285s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 285s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 285s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 285s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 285s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 285s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 285s libpng-dev libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 285s libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 285s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 285s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 285s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 285s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 285s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 285s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 285s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 285s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-genefilter 285s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 285s r-bioc-genomicfeatures r-bioc-genomicfiles r-bioc-genomicranges 285s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib 285s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 285s r-bioc-snpstats r-bioc-sparsearray r-bioc-summarizedexperiment 285s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 285s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 285s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 285s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 285s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 285s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 285s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 285s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 285s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 285s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 285s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 285s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 285s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 285s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 285s r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang 285s r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny 285s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 285s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 285s r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 285s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 285s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 285s xdg-utils zip zlib1g-dev 285s Suggested packages: 285s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 285s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 285s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 285s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 285s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 285s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 285s libboost-context1.83-dev libboost-contract1.83-dev 285s libboost-coroutine1.83-dev libboost-date-time1.83-dev 285s libboost-exception1.83-dev libboost-fiber1.83-dev 285s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 285s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 285s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 285s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 285s libboost-numpy1.83-dev libboost-program-options1.83-dev 285s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 285s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 285s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 285s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 285s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 285s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 285s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 285s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 285s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 285s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 285s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 285s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 285s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 285s r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel 285s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 285s r-cran-webmockr r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats 285s r-cran-class r-cran-rcolorbrewer r-cran-r.utils r-bioc-edger 285s r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz 285s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 285s r-cran-hexbin r-bioc-rhdf5 r-cran-ggplot2 r-cran-roxygen2 r-cran-ff 285s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-getopt 285s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 285s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 285s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 285s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 285s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 285s texlive-latex-base-doc wp2latex 285s Recommended packages: 285s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 285s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 285s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 285s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 285s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 285s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 285s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 285s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 285s r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-waldo r-cran-cairo 285s r-cran-markdown r-cran-ragg r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf 285s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 285s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 285s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 285s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 285s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 285s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 285s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 285s The following packages will be REMOVED: 285s libcurl4 libpsl5 285s The following NEW packages will be installed: 285s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 285s cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config 285s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 285s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 285s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 285s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 285s gfortran-s390x-linux-gnu icu-devtools javascript-common libasan8 libatomic1 285s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 285s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 285s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev 285s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 285s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 285s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 285s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 285s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 285s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 285s libjs-popper.js libjs-prettify libjs-sifter.js 285s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 285s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 285s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 285s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 285s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 285s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 285s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 285s libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 285s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 285s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 285s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 285s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 285s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 285s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 285s r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb 285s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 285s r-bioc-genomicfiles r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 285s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 285s r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 285s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 285s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 285s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 285s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 285s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 285s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 285s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 285s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 285s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 285s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 285s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 285s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 285s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 285s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 285s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 285s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 285s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 285s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 285s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 285s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 285s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 285s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 285s The following packages will be upgraded: 285s curl 285s 1 upgraded, 281 newly installed, 2 to remove and 0 not upgraded. 285s Need to get 454 MB/454 MB of archives. 285s After this operation, 1424 MB of additional disk space will be used. 285s Get:1 /tmp/autopkgtest.i3YYO0/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [776 B] 285s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB] 286s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB] 286s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB] 286s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 286s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 286s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 286s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 286s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 286s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 286s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 286s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 286s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 286s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 286s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 286s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 286s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 286s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 286s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 286s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 286s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 286s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 286s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 286s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 286s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 287s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 287s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 287s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 287s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 287s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 287s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 287s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 287s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 287s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 287s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 287s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 287s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 287s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 287s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 287s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 287s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 287s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 287s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 287s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 287s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 288s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 288s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 288s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 288s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 288s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 288s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 288s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 288s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 288s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 288s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 288s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 288s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 288s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 288s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 288s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 288s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 288s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 288s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 288s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 288s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 288s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 288s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 288s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 288s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 288s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 288s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 288s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 288s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 289s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 289s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 289s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 289s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 289s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 289s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 289s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 289s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 289s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 289s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 289s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 289s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 289s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 289s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 289s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 289s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 289s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 289s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 289s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 289s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 289s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9 [66.4 kB] 289s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 289s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 289s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 289s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 289s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 289s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 289s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 289s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 289s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 289s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 289s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 289s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 290s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 290s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 290s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 290s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 290s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 290s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 291s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 291s Get:114 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9 [41.6 kB] 291s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 291s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 291s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 291s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9 [65.0 kB] 291s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 291s Get:120 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 291s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9 [132 kB] 291s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 291s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 291s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 291s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 291s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 291s Get:127 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 291s Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 291s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3 [49.3 kB] 291s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 291s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1 [186 kB] 291s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 291s Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13 s390x 0.13.72+dfsg.1-1.1 [26.1 kB] 291s Get:134 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 291s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 291s Get:136 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 291s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 291s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 295s Get:139 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 295s Get:140 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 295s Get:141 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 295s Get:142 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 295s Get:143 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 295s Get:144 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 295s Get:145 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 296s Get:146 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 296s Get:147 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 296s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 296s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 296s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 296s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 296s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 296s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 296s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 296s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 296s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 296s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 296s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 296s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 296s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 296s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 296s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 296s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 296s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 296s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 296s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 296s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 296s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 296s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB] 296s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 296s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 296s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 296s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 296s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB] 296s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 296s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 296s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB] 296s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 296s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 296s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 296s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1 [794 kB] 296s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 297s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 297s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 297s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 297s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 297s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 297s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 297s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 297s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 297s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 297s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 297s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 297s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 297s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 297s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 297s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 297s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 297s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 297s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 297s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 297s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 297s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 298s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 298s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 298s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 298s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 298s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 298s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 298s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 298s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 298s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 298s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 298s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 298s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 298s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 298s Get:217 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 298s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 298s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 298s Get:220 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 298s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 298s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 298s Get:223 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 298s Get:224 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 299s Get:225 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 299s Get:226 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 299s Get:227 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 299s Get:228 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 299s Get:229 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 299s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 299s Get:231 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 299s Get:232 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 299s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 299s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 299s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 299s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 300s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 300s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 300s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1 [519 kB] 300s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 300s Get:241 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 300s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 300s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 300s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 300s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 300s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 300s Get:247 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 300s Get:248 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 300s Get:249 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9 [9353 kB] 300s Get:250 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 301s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 301s Get:252 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 305s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 305s Get:254 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 305s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 305s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 305s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 305s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 305s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 305s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-1 [1410 kB] 305s Get:261 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1build1 [3700 kB] 305s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 305s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 305s Get:264 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 305s Get:265 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 306s Get:266 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 306s Get:267 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 306s Get:268 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 306s Get:269 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 306s Get:270 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 306s Get:271 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 306s Get:272 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 306s Get:273 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 306s Get:274 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 306s Get:275 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-bsgenome all 1.70.2-1 [6975 kB] 306s Get:276 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-survival s390x 3.5-8-1 [6161 kB] 307s Get:277 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genefilter s390x 1.84.0-1 [1124 kB] 307s Get:278 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 307s Get:279 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-variantannotation s390x 1.48.1-1 [3572 kB] 307s Get:280 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfiles all 1.38.0+dfsg-1 [532 kB] 307s Get:281 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-snpstats s390x 1.52.0+dfsg-1 [7253 kB] 307s Get:282 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-runit all 0.4.32-3 [283 kB] 308s Preconfiguring packages ... 308s Fetched 454 MB in 22s (20.7 MB/s) 308s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 308s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ... 308s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 308s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested: 308s wget depends on libpsl5 (>= 0.16.0). 308s libcurl4:s390x depends on libpsl5 (>= 0.16.0). 308s libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0). 308s 308s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 308s Removing libpsl5:s390x (0.21.2-1build1) ... 308s Selecting previously unselected package libpsl5t64:s390x. 308s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52168 files and directories currently installed.) 308s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ... 308s Unpacking libpsl5t64:s390x (0.21.2-1.1) ... 308s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested: 308s s390-tools depends on libcurl4 (>= 7.16.2). 308s 308s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52174 files and directories currently installed.) 308s Removing libcurl4:s390x (8.5.0-2ubuntu2) ... 308s Selecting previously unselected package libcurl4t64:s390x. 308s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52169 files and directories currently installed.) 308s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ... 308s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ... 308s Selecting previously unselected package libc-dev-bin. 308s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 308s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 308s Selecting previously unselected package linux-libc-dev:s390x. 308s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ... 308s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 309s Selecting previously unselected package libcrypt-dev:s390x. 309s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 309s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 309s Selecting previously unselected package libtirpc-dev:s390x. 309s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 309s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 309s Selecting previously unselected package libnsl-dev:s390x. 309s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ... 309s Unpacking libnsl-dev:s390x (1.3.0-3) ... 309s Selecting previously unselected package rpcsvc-proto. 309s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 309s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 309s Selecting previously unselected package libc6-dev:s390x. 309s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ... 309s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 309s Selecting previously unselected package libisl23:s390x. 309s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ... 309s Unpacking libisl23:s390x (0.26-3) ... 309s Selecting previously unselected package libmpc3:s390x. 309s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ... 309s Unpacking libmpc3:s390x (1.3.1-1) ... 309s Selecting previously unselected package cpp-13-s390x-linux-gnu. 309s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 309s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 309s Selecting previously unselected package cpp-13. 309s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 309s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 309s Selecting previously unselected package cpp-s390x-linux-gnu. 309s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 309s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 309s Selecting previously unselected package cpp. 309s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 309s Unpacking cpp (4:13.2.0-7ubuntu1) ... 309s Selecting previously unselected package libcc1-0:s390x. 309s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 309s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 309s Selecting previously unselected package libgomp1:s390x. 309s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 309s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 309s Selecting previously unselected package libitm1:s390x. 309s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ... 309s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 309s Selecting previously unselected package libatomic1:s390x. 309s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 309s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 309s Selecting previously unselected package libasan8:s390x. 309s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ... 309s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 309s Selecting previously unselected package libubsan1:s390x. 309s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 309s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 309s Selecting previously unselected package libgcc-13-dev:s390x. 309s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 309s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 309s Selecting previously unselected package gcc-13-s390x-linux-gnu. 309s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 309s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 310s Selecting previously unselected package gcc-13. 310s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 310s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 310s Selecting previously unselected package gcc-s390x-linux-gnu. 310s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 310s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 310s Selecting previously unselected package gcc. 310s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 310s Unpacking gcc (4:13.2.0-7ubuntu1) ... 310s Selecting previously unselected package libstdc++-13-dev:s390x. 310s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 310s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 310s Selecting previously unselected package g++-13-s390x-linux-gnu. 310s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 310s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 310s Selecting previously unselected package g++-13. 310s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ... 310s Unpacking g++-13 (13.2.0-17ubuntu2) ... 310s Selecting previously unselected package g++-s390x-linux-gnu. 310s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 310s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 310s Selecting previously unselected package g++. 310s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 310s Unpacking g++ (4:13.2.0-7ubuntu1) ... 310s Selecting previously unselected package build-essential. 310s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ... 310s Unpacking build-essential (12.10ubuntu1) ... 310s Selecting previously unselected package dctrl-tools. 310s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ... 310s Unpacking dctrl-tools (2.24-3build2) ... 310s Selecting previously unselected package libfreetype6:s390x. 310s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 310s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 310s Selecting previously unselected package fonts-dejavu-mono. 310s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 310s Unpacking fonts-dejavu-mono (2.37-8) ... 310s Selecting previously unselected package fonts-dejavu-core. 310s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 310s Unpacking fonts-dejavu-core (2.37-8) ... 310s Selecting previously unselected package fontconfig-config. 310s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 311s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 311s Selecting previously unselected package libfontconfig1:s390x. 311s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 311s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 311s Selecting previously unselected package fontconfig. 311s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 311s Unpacking fontconfig (2.15.0-1ubuntu1) ... 311s Selecting previously unselected package fonts-font-awesome. 311s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 311s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 311s Selecting previously unselected package fonts-glyphicons-halflings. 311s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 311s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 311s Selecting previously unselected package fonts-lmodern. 311s Preparing to unpack .../040-fonts-lmodern_2.005-1_all.deb ... 311s Unpacking fonts-lmodern (2.005-1) ... 311s Selecting previously unselected package fonts-mathjax. 311s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 311s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 311s Selecting previously unselected package libgfortran5:s390x. 311s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 311s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 311s Selecting previously unselected package libgfortran-13-dev:s390x. 311s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 311s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 311s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 311s Preparing to unpack .../044-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 311s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 311s Selecting previously unselected package gfortran-13. 311s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 311s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 311s Selecting previously unselected package gfortran-s390x-linux-gnu. 311s Preparing to unpack .../046-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 311s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 311s Selecting previously unselected package gfortran. 311s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 311s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 311s Selecting previously unselected package icu-devtools. 311s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_s390x.deb ... 311s Unpacking icu-devtools (74.2-1ubuntu1) ... 311s Selecting previously unselected package javascript-common. 311s Preparing to unpack .../049-javascript-common_11+nmu1_all.deb ... 311s Unpacking javascript-common (11+nmu1) ... 311s Selecting previously unselected package libio-string-perl. 311s Preparing to unpack .../050-libio-string-perl_1.08-4_all.deb ... 311s Unpacking libio-string-perl (1.08-4) ... 311s Selecting previously unselected package liblatex-tounicode-perl. 311s Preparing to unpack .../051-liblatex-tounicode-perl_0.54-2_all.deb ... 311s Unpacking liblatex-tounicode-perl (0.54-2) ... 311s Selecting previously unselected package libbibtex-parser-perl. 311s Preparing to unpack .../052-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 311s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 311s Selecting previously unselected package libblas3:s390x. 311s Preparing to unpack .../053-libblas3_3.12.0-3_s390x.deb ... 311s Unpacking libblas3:s390x (3.12.0-3) ... 311s Selecting previously unselected package libblas-dev:s390x. 311s Preparing to unpack .../054-libblas-dev_3.12.0-3_s390x.deb ... 311s Unpacking libblas-dev:s390x (3.12.0-3) ... 312s Selecting previously unselected package libboost1.83-dev:s390x. 312s Preparing to unpack .../055-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 312s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 314s Selecting previously unselected package libboost-dev:s390x. 314s Preparing to unpack .../056-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 314s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 314s Selecting previously unselected package libbz2-dev:s390x. 314s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 314s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 314s Selecting previously unselected package libpixman-1-0:s390x. 314s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_s390x.deb ... 314s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 314s Selecting previously unselected package libxcb-render0:s390x. 314s Preparing to unpack .../059-libxcb-render0_1.15-1_s390x.deb ... 314s Unpacking libxcb-render0:s390x (1.15-1) ... 314s Selecting previously unselected package libxcb-shm0:s390x. 314s Preparing to unpack .../060-libxcb-shm0_1.15-1_s390x.deb ... 314s Unpacking libxcb-shm0:s390x (1.15-1) ... 314s Selecting previously unselected package libxrender1:s390x. 314s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 314s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 314s Selecting previously unselected package libcairo2:s390x. 314s Preparing to unpack .../062-libcairo2_1.18.0-1_s390x.deb ... 314s Unpacking libcairo2:s390x (1.18.0-1) ... 314s Selecting previously unselected package libdatrie1:s390x. 314s Preparing to unpack .../063-libdatrie1_0.2.13-3_s390x.deb ... 314s Unpacking libdatrie1:s390x (0.2.13-3) ... 314s Selecting previously unselected package libdeflate0:s390x. 314s Preparing to unpack .../064-libdeflate0_1.19-1_s390x.deb ... 314s Unpacking libdeflate0:s390x (1.19-1) ... 314s Selecting previously unselected package libgraphite2-3:s390x. 314s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_s390x.deb ... 314s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 314s Selecting previously unselected package libharfbuzz0b:s390x. 314s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_s390x.deb ... 314s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 314s Selecting previously unselected package x11-common. 314s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 314s Unpacking x11-common (1:7.7+23ubuntu2) ... 314s Selecting previously unselected package libice6:s390x. 314s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_s390x.deb ... 314s Unpacking libice6:s390x (2:1.0.10-1build2) ... 314s Selecting previously unselected package libicu-dev:s390x. 314s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_s390x.deb ... 314s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 314s Selecting previously unselected package libjpeg-turbo8:s390x. 314s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 314s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 314s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 314s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 314s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 314s Selecting previously unselected package libjpeg8:s390x. 314s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_s390x.deb ... 314s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 314s Selecting previously unselected package libjpeg8-dev:s390x. 314s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 314s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 314s Selecting previously unselected package libjpeg-dev:s390x. 314s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 314s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 314s Selecting previously unselected package libjs-bootstrap. 314s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 314s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 314s Selecting previously unselected package libjs-popper.js. 314s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6_all.deb ... 314s Unpacking libjs-popper.js (1.16.1+ds-6) ... 314s Selecting previously unselected package libjs-bootstrap4. 314s Preparing to unpack .../077-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 314s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 314s Selecting previously unselected package libjs-d3. 314s Preparing to unpack .../078-libjs-d3_3.5.17-4_all.deb ... 314s Unpacking libjs-d3 (3.5.17-4) ... 314s Selecting previously unselected package libjs-es5-shim. 314s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ... 314s Unpacking libjs-es5-shim (4.6.7-2) ... 315s Selecting previously unselected package libjs-highlight.js. 315s Preparing to unpack .../080-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 315s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 315s Selecting previously unselected package libjs-jquery. 315s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 315s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 315s Selecting previously unselected package libjs-jquery-datatables. 315s Preparing to unpack .../082-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 315s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 315s Selecting previously unselected package libjs-sifter.js. 315s Preparing to unpack .../083-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 315s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 315s Selecting previously unselected package libjs-microplugin.js. 315s Preparing to unpack .../084-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 315s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 315s Selecting previously unselected package libjs-jquery-selectize.js. 315s Preparing to unpack .../085-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 315s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 315s Selecting previously unselected package libjs-jquery-ui. 315s Preparing to unpack .../086-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 315s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 315s Selecting previously unselected package libjs-json. 315s Preparing to unpack .../087-libjs-json_0~20221030+~1.0.8-1_all.deb ... 315s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 315s Selecting previously unselected package libjs-lunr. 315s Preparing to unpack .../088-libjs-lunr_2.3.9~dfsg-2_all.deb ... 315s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 315s Selecting previously unselected package libjs-prettify. 315s Preparing to unpack .../089-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 315s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 315s Selecting previously unselected package libkpathsea6:s390x. 315s Preparing to unpack .../090-libkpathsea6_2023.20230311.66589-9_s390x.deb ... 315s Unpacking libkpathsea6:s390x (2023.20230311.66589-9) ... 315s Selecting previously unselected package liblapack3:s390x. 315s Preparing to unpack .../091-liblapack3_3.12.0-3_s390x.deb ... 315s Unpacking liblapack3:s390x (3.12.0-3) ... 315s Selecting previously unselected package liblapack-dev:s390x. 315s Preparing to unpack .../092-liblapack-dev_3.12.0-3_s390x.deb ... 315s Unpacking liblapack-dev:s390x (3.12.0-3) ... 315s Selecting previously unselected package liblua5.4-0:s390x. 315s Preparing to unpack .../093-liblua5.4-0_5.4.6-3_s390x.deb ... 315s Unpacking liblua5.4-0:s390x (5.4.6-3) ... 315s Selecting previously unselected package libncurses-dev:s390x. 315s Preparing to unpack .../094-libncurses-dev_6.4+20240113-1ubuntu1_s390x.deb ... 315s Unpacking libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 315s Selecting previously unselected package libthai-data. 315s Preparing to unpack .../095-libthai-data_0.1.29-2_all.deb ... 315s Unpacking libthai-data (0.1.29-2) ... 315s Selecting previously unselected package libthai0:s390x. 315s Preparing to unpack .../096-libthai0_0.1.29-2_s390x.deb ... 315s Unpacking libthai0:s390x (0.1.29-2) ... 315s Selecting previously unselected package libpango-1.0-0:s390x. 315s Preparing to unpack .../097-libpango-1.0-0_1.51.0+ds-4_s390x.deb ... 315s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ... 315s Selecting previously unselected package libpangoft2-1.0-0:s390x. 315s Preparing to unpack .../098-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ... 315s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 315s Selecting previously unselected package libpangocairo-1.0-0:s390x. 315s Preparing to unpack .../099-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 315s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 315s Selecting previously unselected package libpaper1:s390x. 315s Preparing to unpack .../100-libpaper1_1.1.29_s390x.deb ... 315s Unpacking libpaper1:s390x (1.1.29) ... 315s Selecting previously unselected package libpaper-utils. 315s Preparing to unpack .../101-libpaper-utils_1.1.29_s390x.deb ... 315s Unpacking libpaper-utils (1.1.29) ... 315s Selecting previously unselected package libpcre2-16-0:s390x. 315s Preparing to unpack .../102-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ... 315s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ... 315s Selecting previously unselected package libpcre2-32-0:s390x. 315s Preparing to unpack .../103-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ... 315s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ... 315s Selecting previously unselected package libpcre2-posix3:s390x. 315s Preparing to unpack .../104-libpcre2-posix3_10.42-4ubuntu1_s390x.deb ... 315s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ... 315s Selecting previously unselected package libpcre2-dev:s390x. 315s Preparing to unpack .../105-libpcre2-dev_10.42-4ubuntu1_s390x.deb ... 315s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ... 315s Selecting previously unselected package libpkgconf3:s390x. 315s Preparing to unpack .../106-libpkgconf3_1.8.1-2_s390x.deb ... 315s Unpacking libpkgconf3:s390x (1.8.1-2) ... 315s Selecting previously unselected package zlib1g-dev:s390x. 315s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 315s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 315s Selecting previously unselected package libpng-dev:s390x. 315s Preparing to unpack .../108-libpng-dev_1.6.43-1_s390x.deb ... 315s Unpacking libpng-dev:s390x (1.6.43-1) ... 315s Selecting previously unselected package libpotrace0:s390x. 315s Preparing to unpack .../109-libpotrace0_1.16-2_s390x.deb ... 315s Unpacking libpotrace0:s390x (1.16-2) ... 315s Selecting previously unselected package libptexenc1:s390x. 315s Preparing to unpack .../110-libptexenc1_2023.20230311.66589-9_s390x.deb ... 315s Unpacking libptexenc1:s390x (2023.20230311.66589-9) ... 315s Selecting previously unselected package libreadline-dev:s390x. 315s Preparing to unpack .../111-libreadline-dev_8.2-3_s390x.deb ... 315s Unpacking libreadline-dev:s390x (8.2-3) ... 315s Selecting previously unselected package libsharpyuv0:s390x. 315s Preparing to unpack .../112-libsharpyuv0_1.3.2-0.4_s390x.deb ... 315s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 315s Selecting previously unselected package libsm6:s390x. 315s Preparing to unpack .../113-libsm6_2%3a1.2.3-1build2_s390x.deb ... 315s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 315s Selecting previously unselected package libsynctex2:s390x. 316s Preparing to unpack .../114-libsynctex2_2023.20230311.66589-9_s390x.deb ... 316s Unpacking libsynctex2:s390x (2023.20230311.66589-9) ... 316s Selecting previously unselected package libtcl8.6:s390x. 316s Preparing to unpack .../115-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 316s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 316s Selecting previously unselected package libteckit0:s390x. 316s Preparing to unpack .../116-libteckit0_2.5.12+ds1-1_s390x.deb ... 316s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 316s Selecting previously unselected package libtexlua53-5:s390x. 316s Preparing to unpack .../117-libtexlua53-5_2023.20230311.66589-9_s390x.deb ... 316s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9) ... 316s Selecting previously unselected package libjbig0:s390x. 316s Preparing to unpack .../118-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 316s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 316s Selecting previously unselected package libwebp7:s390x. 316s Preparing to unpack .../119-libwebp7_1.3.2-0.4_s390x.deb ... 316s Unpacking libwebp7:s390x (1.3.2-0.4) ... 316s Selecting previously unselected package libtiff6:s390x. 316s Preparing to unpack .../120-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 316s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 316s Selecting previously unselected package libxft2:s390x. 316s Preparing to unpack .../121-libxft2_2.3.6-1_s390x.deb ... 316s Unpacking libxft2:s390x (2.3.6-1) ... 316s Selecting previously unselected package libxss1:s390x. 316s Preparing to unpack .../122-libxss1_1%3a1.2.3-1build2_s390x.deb ... 316s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 316s Selecting previously unselected package libtk8.6:s390x. 316s Preparing to unpack .../123-libtk8.6_8.6.13-2_s390x.deb ... 316s Unpacking libtk8.6:s390x (8.6.13-2) ... 316s Selecting previously unselected package libxt6:s390x. 316s Preparing to unpack .../124-libxt6_1%3a1.2.1-1.1_s390x.deb ... 316s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 316s Selecting previously unselected package libxmu6:s390x. 316s Preparing to unpack .../125-libxmu6_2%3a1.1.3-3_s390x.deb ... 316s Unpacking libxmu6:s390x (2:1.1.3-3) ... 316s Selecting previously unselected package libxpm4:s390x. 316s Preparing to unpack .../126-libxpm4_1%3a3.5.17-1_s390x.deb ... 316s Unpacking libxpm4:s390x (1:3.5.17-1) ... 316s Selecting previously unselected package libxaw7:s390x. 316s Preparing to unpack .../127-libxaw7_2%3a1.0.14-1_s390x.deb ... 316s Unpacking libxaw7:s390x (2:1.0.14-1) ... 316s Selecting previously unselected package libxi6:s390x. 316s Preparing to unpack .../128-libxi6_2%3a1.8.1-1_s390x.deb ... 316s Unpacking libxi6:s390x (2:1.8.1-1) ... 316s Selecting previously unselected package libzzip-0-13:s390x. 316s Preparing to unpack .../129-libzzip-0-13_0.13.72+dfsg.1-1.1_s390x.deb ... 316s Unpacking libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 316s Selecting previously unselected package node-bootstrap-sass. 316s Preparing to unpack .../130-node-bootstrap-sass_3.4.3-2_all.deb ... 316s Unpacking node-bootstrap-sass (3.4.3-2) ... 316s Selecting previously unselected package node-html5shiv. 316s Preparing to unpack .../131-node-html5shiv_3.7.3+dfsg-5_all.deb ... 316s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 316s Selecting previously unselected package node-normalize.css. 316s Preparing to unpack .../132-node-normalize.css_8.0.1-5_all.deb ... 316s Unpacking node-normalize.css (8.0.1-5) ... 316s Selecting previously unselected package pandoc-data. 316s Preparing to unpack .../133-pandoc-data_3.1.3-1_all.deb ... 316s Unpacking pandoc-data (3.1.3-1) ... 316s Selecting previously unselected package pandoc. 316s Preparing to unpack .../134-pandoc_3.1.3+ds-2_s390x.deb ... 316s Unpacking pandoc (3.1.3+ds-2) ... 318s Selecting previously unselected package pkgconf-bin. 318s Preparing to unpack .../135-pkgconf-bin_1.8.1-2_s390x.deb ... 318s Unpacking pkgconf-bin (1.8.1-2) ... 318s Selecting previously unselected package pkgconf:s390x. 318s Preparing to unpack .../136-pkgconf_1.8.1-2_s390x.deb ... 318s Unpacking pkgconf:s390x (1.8.1-2) ... 318s Selecting previously unselected package pkg-config:s390x. 318s Preparing to unpack .../137-pkg-config_1.8.1-2_s390x.deb ... 318s Unpacking pkg-config:s390x (1.8.1-2) ... 318s Selecting previously unselected package zip. 318s Preparing to unpack .../138-zip_3.0-13_s390x.deb ... 318s Unpacking zip (3.0-13) ... 318s Selecting previously unselected package unzip. 318s Preparing to unpack .../139-unzip_6.0-28ubuntu3_s390x.deb ... 318s Unpacking unzip (6.0-28ubuntu3) ... 318s Selecting previously unselected package xdg-utils. 318s Preparing to unpack .../140-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 318s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 318s Selecting previously unselected package r-base-core. 318s Preparing to unpack .../141-r-base-core_4.3.2-1build1_s390x.deb ... 318s Unpacking r-base-core (4.3.2-1build1) ... 318s Selecting previously unselected package liblzma-dev:s390x. 318s Preparing to unpack .../142-liblzma-dev_5.4.5-0.3_s390x.deb ... 318s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 318s Selecting previously unselected package r-base-dev. 318s Preparing to unpack .../143-r-base-dev_4.3.2-1build1_all.deb ... 318s Unpacking r-base-dev (4.3.2-1build1) ... 318s Selecting previously unselected package pkg-r-autopkgtest. 318s Preparing to unpack .../144-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 318s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 318s Selecting previously unselected package r-bioc-biocgenerics. 318s Preparing to unpack .../145-r-bioc-biocgenerics_0.48.1-2_all.deb ... 318s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 318s Selecting previously unselected package r-bioc-biobase. 318s Preparing to unpack .../146-r-bioc-biobase_2.62.0-1_s390x.deb ... 318s Unpacking r-bioc-biobase (2.62.0-1) ... 318s Selecting previously unselected package r-bioc-s4vectors. 318s Preparing to unpack .../147-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 318s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 318s Selecting previously unselected package r-bioc-iranges. 318s Preparing to unpack .../148-r-bioc-iranges_2.36.0-1_s390x.deb ... 318s Unpacking r-bioc-iranges (2.36.0-1) ... 318s Selecting previously unselected package r-cran-dbi. 318s Preparing to unpack .../149-r-cran-dbi_1.2.2-1_all.deb ... 318s Unpacking r-cran-dbi (1.2.2-1) ... 319s Selecting previously unselected package r-cran-bit. 319s Preparing to unpack .../150-r-cran-bit_4.0.5-1_s390x.deb ... 319s Unpacking r-cran-bit (4.0.5-1) ... 319s Selecting previously unselected package r-cran-bit64. 319s Preparing to unpack .../151-r-cran-bit64_4.0.5-1_s390x.deb ... 319s Unpacking r-cran-bit64 (4.0.5-1) ... 319s Selecting previously unselected package r-cran-rlang. 319s Preparing to unpack .../152-r-cran-rlang_1.1.3-1_s390x.deb ... 319s Unpacking r-cran-rlang (1.1.3-1) ... 319s Selecting previously unselected package r-cran-cli. 319s Preparing to unpack .../153-r-cran-cli_3.6.2-1_s390x.deb ... 319s Unpacking r-cran-cli (3.6.2-1) ... 319s Selecting previously unselected package r-cran-glue. 319s Preparing to unpack .../154-r-cran-glue_1.7.0-1_s390x.deb ... 319s Unpacking r-cran-glue (1.7.0-1) ... 319s Selecting previously unselected package r-cran-lifecycle. 319s Preparing to unpack .../155-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 319s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 319s Selecting previously unselected package r-cran-vctrs. 319s Preparing to unpack .../156-r-cran-vctrs_0.6.5-1_s390x.deb ... 319s Unpacking r-cran-vctrs (0.6.5-1) ... 319s Selecting previously unselected package r-cran-blob. 319s Preparing to unpack .../157-r-cran-blob_1.2.4-1_all.deb ... 319s Unpacking r-cran-blob (1.2.4-1) ... 319s Selecting previously unselected package r-cran-fastmap. 319s Preparing to unpack .../158-r-cran-fastmap_1.1.1-1_s390x.deb ... 319s Unpacking r-cran-fastmap (1.1.1-1) ... 319s Selecting previously unselected package r-cran-cachem. 319s Preparing to unpack .../159-r-cran-cachem_1.0.8-1_s390x.deb ... 319s Unpacking r-cran-cachem (1.0.8-1) ... 319s Selecting previously unselected package r-cran-memoise. 319s Preparing to unpack .../160-r-cran-memoise_2.0.1-1_all.deb ... 319s Unpacking r-cran-memoise (2.0.1-1) ... 319s Selecting previously unselected package r-cran-pkgconfig. 319s Preparing to unpack .../161-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 319s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 319s Selecting previously unselected package r-cran-plogr. 319s Preparing to unpack .../162-r-cran-plogr_0.2.0-3build1_all.deb ... 319s Unpacking r-cran-plogr (0.2.0-3build1) ... 319s Selecting previously unselected package r-cran-cpp11. 319s Preparing to unpack .../163-r-cran-cpp11_0.4.7-1_all.deb ... 319s Unpacking r-cran-cpp11 (0.4.7-1) ... 319s Selecting previously unselected package r-cran-rsqlite. 319s Preparing to unpack .../164-r-cran-rsqlite_2.3.4-1_s390x.deb ... 319s Unpacking r-cran-rsqlite (2.3.4-1) ... 319s Selecting previously unselected package r-cran-curl. 319s Preparing to unpack .../165-r-cran-curl_5.2.0+dfsg-1_s390x.deb ... 319s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 319s Selecting previously unselected package r-cran-jsonlite. 319s Preparing to unpack .../166-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 319s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 319s Selecting previously unselected package r-cran-mime. 319s Preparing to unpack .../167-r-cran-mime_0.12-1_s390x.deb ... 319s Unpacking r-cran-mime (0.12-1) ... 319s Selecting previously unselected package r-cran-sys. 319s Preparing to unpack .../168-r-cran-sys_3.4.2-1_s390x.deb ... 319s Unpacking r-cran-sys (3.4.2-1) ... 319s Selecting previously unselected package r-cran-askpass. 319s Preparing to unpack .../169-r-cran-askpass_1.2.0-1_s390x.deb ... 319s Unpacking r-cran-askpass (1.2.0-1) ... 319s Selecting previously unselected package r-cran-openssl. 319s Preparing to unpack .../170-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ... 319s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 319s Selecting previously unselected package r-cran-r6. 319s Preparing to unpack .../171-r-cran-r6_2.5.1-1_all.deb ... 319s Unpacking r-cran-r6 (2.5.1-1) ... 319s Selecting previously unselected package r-cran-httr. 319s Preparing to unpack .../172-r-cran-httr_1.4.7+dfsg-1_all.deb ... 319s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 319s Selecting previously unselected package r-cran-png. 319s Preparing to unpack .../173-r-cran-png_0.1-8-1_s390x.deb ... 319s Unpacking r-cran-png (0.1-8-1) ... 319s Selecting previously unselected package r-bioc-zlibbioc. 319s Preparing to unpack .../174-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 319s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 319s Selecting previously unselected package r-bioc-xvector. 319s Preparing to unpack .../175-r-bioc-xvector_0.42.0-1_s390x.deb ... 319s Unpacking r-bioc-xvector (0.42.0-1) ... 319s Selecting previously unselected package r-cran-bitops. 319s Preparing to unpack .../176-r-cran-bitops_1.0-7-1_s390x.deb ... 319s Unpacking r-cran-bitops (1.0-7-1) ... 319s Selecting previously unselected package r-cran-rcurl. 319s Preparing to unpack .../177-r-cran-rcurl_1.98-1.14+dfsg-1_s390x.deb ... 319s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 319s Selecting previously unselected package r-bioc-genomeinfodbdata. 319s Preparing to unpack .../178-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 319s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 319s Selecting previously unselected package r-bioc-genomeinfodb. 319s Preparing to unpack .../179-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 319s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 319s Selecting previously unselected package r-cran-crayon. 319s Preparing to unpack .../180-r-cran-crayon_1.5.2-1_all.deb ... 319s Unpacking r-cran-crayon (1.5.2-1) ... 319s Selecting previously unselected package r-bioc-biostrings. 319s Preparing to unpack .../181-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 319s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 320s Selecting previously unselected package r-bioc-keggrest. 320s Preparing to unpack .../182-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 320s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 320s Selecting previously unselected package r-bioc-annotationdbi. 320s Preparing to unpack .../183-r-bioc-annotationdbi_1.64.1-1_all.deb ... 320s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 320s Selecting previously unselected package r-cran-xml. 320s Preparing to unpack .../184-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 320s Unpacking r-cran-xml (3.99-0.16.1-1) ... 320s Selecting previously unselected package r-cran-xtable. 320s Preparing to unpack .../185-r-cran-xtable_1%3a1.8-4-2_all.deb ... 320s Unpacking r-cran-xtable (1:1.8-4-2) ... 320s Selecting previously unselected package r-bioc-annotate. 320s Preparing to unpack .../186-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 320s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 320s Selecting previously unselected package r-cran-generics. 320s Preparing to unpack .../187-r-cran-generics_0.1.3-1_all.deb ... 320s Unpacking r-cran-generics (0.1.3-1) ... 320s Selecting previously unselected package r-cran-magrittr. 320s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_s390x.deb ... 320s Unpacking r-cran-magrittr (2.0.3-1) ... 320s Selecting previously unselected package r-cran-fansi. 320s Preparing to unpack .../189-r-cran-fansi_1.0.5-1_s390x.deb ... 320s Unpacking r-cran-fansi (1.0.5-1) ... 320s Selecting previously unselected package r-cran-utf8. 320s Preparing to unpack .../190-r-cran-utf8_1.2.4-1_s390x.deb ... 320s Unpacking r-cran-utf8 (1.2.4-1) ... 320s Selecting previously unselected package r-cran-pillar. 320s Preparing to unpack .../191-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 320s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 320s Selecting previously unselected package r-cran-tibble. 320s Preparing to unpack .../192-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 320s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 320s Selecting previously unselected package r-cran-withr. 320s Preparing to unpack .../193-r-cran-withr_2.5.0-1_all.deb ... 320s Unpacking r-cran-withr (2.5.0-1) ... 320s Selecting previously unselected package r-cran-tidyselect. 320s Preparing to unpack .../194-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 320s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 320s Selecting previously unselected package r-cran-dplyr. 320s Preparing to unpack .../195-r-cran-dplyr_1.1.4-1_s390x.deb ... 320s Unpacking r-cran-dplyr (1.1.4-1) ... 320s Selecting previously unselected package r-cran-purrr. 320s Preparing to unpack .../196-r-cran-purrr_1.0.2-1_s390x.deb ... 320s Unpacking r-cran-purrr (1.0.2-1) ... 320s Selecting previously unselected package r-cran-stringi. 320s Preparing to unpack .../197-r-cran-stringi_1.8.3-1_s390x.deb ... 320s Unpacking r-cran-stringi (1.8.3-1) ... 320s Selecting previously unselected package r-cran-stringr. 320s Preparing to unpack .../198-r-cran-stringr_1.5.1-1_all.deb ... 320s Unpacking r-cran-stringr (1.5.1-1) ... 320s Selecting previously unselected package r-cran-tidyr. 320s Preparing to unpack .../199-r-cran-tidyr_1.3.1-1_s390x.deb ... 320s Unpacking r-cran-tidyr (1.3.1-1) ... 320s Selecting previously unselected package r-cran-dbplyr. 320s Preparing to unpack .../200-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 320s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 320s Selecting previously unselected package r-cran-filelock. 320s Preparing to unpack .../201-r-cran-filelock_1.0.3-1_s390x.deb ... 320s Unpacking r-cran-filelock (1.0.3-1) ... 320s Selecting previously unselected package r-bioc-biocfilecache. 320s Preparing to unpack .../202-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 320s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 320s Selecting previously unselected package r-bioc-biocio. 320s Preparing to unpack .../203-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 320s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 320s Selecting previously unselected package r-cran-formatr. 320s Preparing to unpack .../204-r-cran-formatr_1.14-1_all.deb ... 320s Unpacking r-cran-formatr (1.14-1) ... 320s Selecting previously unselected package r-cran-lambda.r. 320s Preparing to unpack .../205-r-cran-lambda.r_1.2.4-2build1_all.deb ... 320s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 320s Selecting previously unselected package r-cran-futile.options. 320s Preparing to unpack .../206-r-cran-futile.options_1.0.1-3build1_all.deb ... 320s Unpacking r-cran-futile.options (1.0.1-3build1) ... 320s Selecting previously unselected package r-cran-futile.logger. 320s Preparing to unpack .../207-r-cran-futile.logger_1.4.3-4build1_all.deb ... 320s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 320s Selecting previously unselected package r-cran-snow. 320s Preparing to unpack .../208-r-cran-snow_1%3a0.4.4-2_all.deb ... 320s Unpacking r-cran-snow (1:0.4.4-2) ... 320s Selecting previously unselected package r-cran-codetools. 320s Preparing to unpack .../209-r-cran-codetools_0.2-19-1_all.deb ... 320s Unpacking r-cran-codetools (0.2-19-1) ... 320s Selecting previously unselected package r-cran-bh. 321s Preparing to unpack .../210-r-cran-bh_1.84.0-1_all.deb ... 321s Unpacking r-cran-bh (1.84.0-1) ... 321s Selecting previously unselected package r-bioc-biocparallel. 321s Preparing to unpack .../211-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 321s Unpacking r-bioc-biocparallel (1.36.0-1) ... 321s Selecting previously unselected package r-cran-base64enc. 321s Preparing to unpack .../212-r-cran-base64enc_0.1-3-3_s390x.deb ... 321s Unpacking r-cran-base64enc (0.1-3-3) ... 321s Selecting previously unselected package r-cran-digest. 321s Preparing to unpack .../213-r-cran-digest_0.6.34-1_s390x.deb ... 321s Unpacking r-cran-digest (0.6.34-1) ... 321s Selecting previously unselected package r-cran-ellipsis. 321s Preparing to unpack .../214-r-cran-ellipsis_0.3.2-2_s390x.deb ... 321s Unpacking r-cran-ellipsis (0.3.2-2) ... 321s Selecting previously unselected package r-cran-htmltools. 321s Preparing to unpack .../215-r-cran-htmltools_0.5.7-1_s390x.deb ... 321s Unpacking r-cran-htmltools (0.5.7-1) ... 321s Selecting previously unselected package r-cran-evaluate. 321s Preparing to unpack .../216-r-cran-evaluate_0.23-1_all.deb ... 321s Unpacking r-cran-evaluate (0.23-1) ... 321s Selecting previously unselected package r-cran-xfun. 321s Preparing to unpack .../217-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 321s Unpacking r-cran-xfun (0.41+dfsg-1) ... 321s Selecting previously unselected package r-cran-highr. 321s Preparing to unpack .../218-r-cran-highr_0.10+dfsg-1_all.deb ... 321s Unpacking r-cran-highr (0.10+dfsg-1) ... 321s Selecting previously unselected package r-cran-yaml. 321s Preparing to unpack .../219-r-cran-yaml_2.3.8-1_s390x.deb ... 321s Unpacking r-cran-yaml (2.3.8-1) ... 321s Selecting previously unselected package libjs-mathjax. 321s Preparing to unpack .../220-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 321s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 322s Selecting previously unselected package r-cran-knitr. 322s Preparing to unpack .../221-r-cran-knitr_1.45+dfsg-1_all.deb ... 322s Unpacking r-cran-knitr (1.45+dfsg-1) ... 322s Selecting previously unselected package r-cran-jquerylib. 322s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 322s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 322s Selecting previously unselected package r-cran-fs. 322s Preparing to unpack .../223-r-cran-fs_1.6.3+dfsg-1_s390x.deb ... 322s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 322s Selecting previously unselected package r-cran-rappdirs. 322s Preparing to unpack .../224-r-cran-rappdirs_0.3.3-1_s390x.deb ... 322s Unpacking r-cran-rappdirs (0.3.3-1) ... 322s Selecting previously unselected package r-cran-sass. 322s Preparing to unpack .../225-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 322s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 322s Selecting previously unselected package r-cran-bslib. 322s Preparing to unpack .../226-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 322s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 322s Selecting previously unselected package r-cran-fontawesome. 322s Preparing to unpack .../227-r-cran-fontawesome_0.5.2-1_all.deb ... 322s Unpacking r-cran-fontawesome (0.5.2-1) ... 322s Selecting previously unselected package r-cran-tinytex. 322s Preparing to unpack .../228-r-cran-tinytex_0.49-1_all.deb ... 322s Unpacking r-cran-tinytex (0.49-1) ... 322s Selecting previously unselected package libjs-modernizr. 322s Preparing to unpack .../229-libjs-modernizr_2.6.2+ds1-5_all.deb ... 322s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 322s Selecting previously unselected package r-cran-littler. 322s Preparing to unpack .../230-r-cran-littler_0.3.19-1_s390x.deb ... 322s Unpacking r-cran-littler (0.3.19-1) ... 322s Selecting previously unselected package r-cran-pkgkitten. 322s Preparing to unpack .../231-r-cran-pkgkitten_0.2.3-1_all.deb ... 322s Unpacking r-cran-pkgkitten (0.2.3-1) ... 322s Selecting previously unselected package r-cran-rcpp. 322s Preparing to unpack .../232-r-cran-rcpp_1.0.12-1_s390x.deb ... 322s Unpacking r-cran-rcpp (1.0.12-1) ... 323s Selecting previously unselected package r-cran-later. 323s Preparing to unpack .../233-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 323s Unpacking r-cran-later (1.3.2+dfsg-1) ... 323s Selecting previously unselected package r-cran-promises. 323s Preparing to unpack .../234-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 323s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 323s Selecting previously unselected package r-cran-httpuv. 323s Preparing to unpack .../235-r-cran-httpuv_1.6.14+dfsg-1_s390x.deb ... 323s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 323s Selecting previously unselected package r-cran-sourcetools. 323s Preparing to unpack .../236-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 323s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 323s Selecting previously unselected package r-cran-commonmark. 323s Preparing to unpack .../237-r-cran-commonmark_1.9.1-1_s390x.deb ... 323s Unpacking r-cran-commonmark (1.9.1-1) ... 323s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 323s Preparing to unpack .../238-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 323s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 323s Selecting previously unselected package r-cran-shiny. 323s Preparing to unpack .../239-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 323s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 323s Selecting previously unselected package r-cran-rmarkdown. 323s Preparing to unpack .../240-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 323s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 323s Selecting previously unselected package r-cran-bookdown. 323s Preparing to unpack .../241-r-cran-bookdown_0.37+dfsg-1_all.deb ... 323s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 323s Selecting previously unselected package r-cran-biocmanager. 323s Preparing to unpack .../242-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 323s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 323s Selecting previously unselected package tex-common. 323s Preparing to unpack .../243-tex-common_6.18_all.deb ... 323s Unpacking tex-common (6.18) ... 323s Selecting previously unselected package t1utils. 323s Preparing to unpack .../244-t1utils_1.41-4build2_s390x.deb ... 323s Unpacking t1utils (1.41-4build2) ... 323s Selecting previously unselected package texlive-binaries. 323s Preparing to unpack .../245-texlive-binaries_2023.20230311.66589-9_s390x.deb ... 323s Unpacking texlive-binaries (2023.20230311.66589-9) ... 323s Selecting previously unselected package texlive-base. 323s Preparing to unpack .../246-texlive-base_2023.20240207-1_all.deb ... 323s Unpacking texlive-base (2023.20240207-1) ... 326s Selecting previously unselected package texlive-latex-base. 326s Preparing to unpack .../247-texlive-latex-base_2023.20240207-1_all.deb ... 326s Unpacking texlive-latex-base (2023.20240207-1) ... 326s Selecting previously unselected package texlive-bibtex-extra. 326s Preparing to unpack .../248-texlive-bibtex-extra_2023.20240207-1_all.deb ... 326s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 334s Selecting previously unselected package r-bioc-biocstyle. 334s Preparing to unpack .../249-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 334s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 334s Selecting previously unselected package r-cran-hms. 334s Preparing to unpack .../250-r-cran-hms_1.1.3-1_all.deb ... 334s Unpacking r-cran-hms (1.1.3-1) ... 334s Selecting previously unselected package r-cran-prettyunits. 334s Preparing to unpack .../251-r-cran-prettyunits_1.2.0-1_all.deb ... 334s Unpacking r-cran-prettyunits (1.2.0-1) ... 334s Selecting previously unselected package r-cran-progress. 334s Preparing to unpack .../252-r-cran-progress_1.2.3-1_all.deb ... 334s Unpacking r-cran-progress (1.2.3-1) ... 334s Selecting previously unselected package r-cran-xml2. 334s Preparing to unpack .../253-r-cran-xml2_1.3.6-1_s390x.deb ... 334s Unpacking r-cran-xml2 (1.3.6-1) ... 334s Selecting previously unselected package r-bioc-biomart. 334s Preparing to unpack .../254-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 334s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 334s Selecting previously unselected package r-bioc-genomicranges. 334s Preparing to unpack .../255-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 334s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 334s Selecting previously unselected package r-bioc-rhtslib. 334s Preparing to unpack .../256-r-bioc-rhtslib_2.4.1+dfsg-1_s390x.deb ... 334s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 334s Selecting previously unselected package r-bioc-rsamtools. 334s Preparing to unpack .../257-r-bioc-rsamtools_2.18.0+dfsg-1build1_s390x.deb ... 334s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 334s Selecting previously unselected package r-cran-matrixstats. 334s Preparing to unpack .../258-r-cran-matrixstats_1.2.0-1_s390x.deb ... 334s Unpacking r-cran-matrixstats (1.2.0-1) ... 334s Selecting previously unselected package r-bioc-matrixgenerics. 334s Preparing to unpack .../259-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 334s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 334s Selecting previously unselected package r-cran-lattice. 334s Preparing to unpack .../260-r-cran-lattice_0.22-5-1_s390x.deb ... 334s Unpacking r-cran-lattice (0.22-5-1) ... 334s Selecting previously unselected package r-cran-matrix. 334s Preparing to unpack .../261-r-cran-matrix_1.6-5-1_s390x.deb ... 334s Unpacking r-cran-matrix (1.6-5-1) ... 334s Selecting previously unselected package r-cran-abind. 334s Preparing to unpack .../262-r-cran-abind_1.4-5-2_all.deb ... 334s Unpacking r-cran-abind (1.4-5-2) ... 334s Selecting previously unselected package r-bioc-s4arrays. 334s Preparing to unpack .../263-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 334s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 334s Selecting previously unselected package r-bioc-sparsearray. 334s Preparing to unpack .../264-r-bioc-sparsearray_1.2.4+dfsg-1_s390x.deb ... 334s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 334s Selecting previously unselected package r-bioc-delayedarray. 334s Preparing to unpack .../265-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ... 334s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 334s Selecting previously unselected package r-bioc-summarizedexperiment. 334s Preparing to unpack .../266-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 334s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 334s Selecting previously unselected package r-bioc-genomicalignments. 334s Preparing to unpack .../267-r-bioc-genomicalignments_1.38.2-1_s390x.deb ... 334s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 334s Selecting previously unselected package r-cran-rjson. 334s Preparing to unpack .../268-r-cran-rjson_0.2.21-1_s390x.deb ... 334s Unpacking r-cran-rjson (0.2.21-1) ... 334s Selecting previously unselected package r-cran-restfulr. 334s Preparing to unpack .../269-r-cran-restfulr_0.0.15-1_s390x.deb ... 334s Unpacking r-cran-restfulr (0.0.15-1) ... 334s Selecting previously unselected package r-bioc-rtracklayer. 334s Preparing to unpack .../270-r-bioc-rtracklayer_1.62.0-1_s390x.deb ... 334s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 334s Selecting previously unselected package r-bioc-bsgenome. 334s Preparing to unpack .../271-r-bioc-bsgenome_1.70.2-1_all.deb ... 334s Unpacking r-bioc-bsgenome (1.70.2-1) ... 335s Selecting previously unselected package r-cran-survival. 335s Preparing to unpack .../272-r-cran-survival_3.5-8-1_s390x.deb ... 335s Unpacking r-cran-survival (3.5-8-1) ... 335s Selecting previously unselected package r-bioc-genefilter. 335s Preparing to unpack .../273-r-bioc-genefilter_1.84.0-1_s390x.deb ... 335s Unpacking r-bioc-genefilter (1.84.0-1) ... 335s Selecting previously unselected package r-bioc-genomicfeatures. 335s Preparing to unpack .../274-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 335s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 335s Selecting previously unselected package r-bioc-variantannotation. 335s Preparing to unpack .../275-r-bioc-variantannotation_1.48.1-1_s390x.deb ... 335s Unpacking r-bioc-variantannotation (1.48.1-1) ... 335s Selecting previously unselected package r-bioc-genomicfiles. 335s Preparing to unpack .../276-r-bioc-genomicfiles_1.38.0+dfsg-1_all.deb ... 335s Unpacking r-bioc-genomicfiles (1.38.0+dfsg-1) ... 335s Selecting previously unselected package r-bioc-snpstats. 335s Preparing to unpack .../277-r-bioc-snpstats_1.52.0+dfsg-1_s390x.deb ... 335s Unpacking r-bioc-snpstats (1.52.0+dfsg-1) ... 335s Selecting previously unselected package r-cran-runit. 335s Preparing to unpack .../278-r-cran-runit_0.4.32-3_all.deb ... 335s Unpacking r-cran-runit (0.4.32-3) ... 335s Selecting previously unselected package autopkgtest-satdep. 335s Preparing to unpack .../279-1-autopkgtest-satdep.deb ... 335s Unpacking autopkgtest-satdep (0) ... 335s Setting up libjs-json (0~20221030+~1.0.8-1) ... 335s Setting up javascript-common (11+nmu1) ... 335s Setting up libgraphite2-3:s390x (1.3.14-2) ... 335s Setting up libpixman-1-0:s390x (0.42.2-1) ... 335s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 335s Setting up libpaper1:s390x (1.1.29) ... 335s 335s Creating config file /etc/papersize with new version 335s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 335s Setting up libxpm4:s390x (1:3.5.17-1) ... 335s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 335s Setting up libxi6:s390x (2:1.8.1-1) ... 335s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 335s Setting up libdatrie1:s390x (0.2.13-3) ... 335s Setting up libjs-popper.js (1.16.1+ds-6) ... 335s Setting up libxcb-render0:s390x (1.15-1) ... 335s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 335s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 335s Setting up libjs-lunr (2.3.9~dfsg-2) ... 335s Setting up unzip (6.0-28ubuntu3) ... 335s Setting up liblatex-tounicode-perl (0.54-2) ... 335s Setting up x11-common (1:7.7+23ubuntu2) ... 335s Setting up node-html5shiv (3.7.3+dfsg-5) ... 335s Setting up libpsl5t64:s390x (0.21.2-1.1) ... 335s Setting up libdeflate0:s390x (1.19-1) ... 335s Setting up linux-libc-dev:s390x (6.8.0-11.11) ... 335s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 335s Setting up libxcb-shm0:s390x (1.15-1) ... 335s Setting up libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 335s Setting up libpaper-utils (1.1.29) ... 335s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 335s Setting up libjs-modernizr (2.6.2+ds1-5) ... 335s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 335s Setting up libpcre2-16-0:s390x (10.42-4ubuntu1) ... 335s Setting up libjs-es5-shim (4.6.7-2) ... 336s Setting up tex-common (6.18) ... 336s update-language: texlive-base not installed and configured, doing nothing! 336s Setting up libio-string-perl (1.08-4) ... 336s Setting up zip (3.0-13) ... 336s Setting up libpcre2-32-0:s390x (10.42-4ubuntu1) ... 336s Setting up libblas3:s390x (3.12.0-3) ... 336s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 336s Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ... 336s Setting up libpkgconf3:s390x (1.8.1-2) ... 336s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 336s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 336s Setting up libteckit0:s390x (2.5.12+ds1-1) ... 336s Setting up t1utils (1.41-4build2) ... 336s Setting up libtexlua53-5:s390x (2023.20230311.66589-9) ... 336s Setting up libjs-d3 (3.5.17-4) ... 336s Setting up fonts-dejavu-mono (2.37-8) ... 336s Setting up libmpc3:s390x (1.3.1-1) ... 336s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ... 336s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 336s Setting up icu-devtools (74.2-1ubuntu1) ... 336s Setting up fonts-dejavu-core (2.37-8) ... 336s Setting up pkgconf-bin (1.8.1-2) ... 336s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 336s Setting up libkpathsea6:s390x (2023.20230311.66589-9) ... 336s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 336s Setting up libwebp7:s390x (1.3.2-0.4) ... 336s Setting up liblzma-dev:s390x (5.4.5-0.3) ... 336s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ... 336s Setting up libpcre2-posix3:s390x (10.42-4ubuntu1) ... 336s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 336s Setting up libnsl-dev:s390x (1.3.0-3) ... 336s Setting up libcrypt-dev:s390x (1:4.4.36-4) ... 336s Setting up libasan8:s390x (14-20240303-1ubuntu1) ... 336s Setting up fonts-lmodern (2.005-1) ... 336s Setting up liblua5.4-0:s390x (5.4.6-3) ... 336s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 336s Setting up libthai-data (0.1.29-2) ... 336s Setting up node-bootstrap-sass (3.4.3-2) ... 336s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 336s Setting up libxss1:s390x (1:1.2.3-1build2) ... 336s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 336s Setting up pandoc-data (3.1.3-1) ... 336s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 336s Setting up libisl23:s390x (0.26-3) ... 336s Setting up libc-dev-bin (2.39-0ubuntu2) ... 336s Setting up node-normalize.css (8.0.1-5) ... 336s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 336s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 336s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 336s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ... 336s Setting up libblas-dev:s390x (3.12.0-3) ... 336s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 336s Setting up dctrl-tools (2.24-3build2) ... 336s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 336s Setting up libitm1:s390x (14-20240303-1ubuntu1) ... 336s Setting up libsynctex2:s390x (2023.20230311.66589-9) ... 336s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 336s Setting up libpotrace0:s390x (1.16-2) ... 336s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 336s Setting up libice6:s390x (2:1.0.10-1build2) ... 336s Setting up liblapack3:s390x (3.12.0-3) ... 336s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 336s Setting up libcurl4t64:s390x (8.5.0-2ubuntu7) ... 336s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 336s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 336s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 336s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 336s Setting up pkgconf:s390x (1.8.1-2) ... 336s Setting up libthai0:s390x (0.1.29-2) ... 336s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 336s Setting up libptexenc1:s390x (2023.20230311.66589-9) ... 336s Setting up cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 336s Setting up pandoc (3.1.3+ds-2) ... 336s Setting up liblapack-dev:s390x (3.12.0-3) ... 336s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 336s Setting up pkg-config:s390x (1.8.1-2) ... 336s Setting up libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 336s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 336s Setting up libc6-dev:s390x (2.39-0ubuntu2) ... 336s Setting up curl (8.5.0-2ubuntu7) ... 336s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 336s Setting up libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 336s Setting up libsm6:s390x (2:1.2.3-1build2) ... 336s Setting up libicu-dev:s390x (74.2-1ubuntu1) ... 336s Setting up libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 336s Setting up libbz2-dev:s390x (1.0.8-5ubuntu1) ... 336s Setting up fontconfig (2.15.0-1ubuntu1) ... 338s Regenerating fonts cache... done. 338s Setting up libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 338s Setting up libxft2:s390x (2.3.6-1) ... 338s Setting up libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 338s Setting up libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 338s Setting up libpcre2-dev:s390x (10.42-4ubuntu1) ... 338s Setting up cpp-13 (13.2.0-17ubuntu2) ... 338s Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 338s Setting up libtk8.6:s390x (8.6.13-2) ... 338s Setting up libpango-1.0-0:s390x (1.51.0+ds-4) ... 338s Setting up libreadline-dev:s390x (8.2-3) ... 338s Setting up libcairo2:s390x (1.18.0-1) ... 338s Setting up gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 338s Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 338s Setting up g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 338s Setting up gcc-13 (13.2.0-17ubuntu2) ... 338s Setting up libxt6:s390x (1:1.2.1-1.1) ... 338s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 338s Setting up cpp (4:13.2.0-7ubuntu1) ... 338s Setting up gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 338s Setting up libboost-dev:s390x (1.83.0.1ubuntu2) ... 338s Setting up libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 338s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 338s Setting up libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 338s Setting up g++-13 (13.2.0-17ubuntu2) ... 338s Setting up libxmu6:s390x (2:1.1.3-3) ... 338s Setting up gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 338s Setting up libpng-dev:s390x (1.6.43-1) ... 338s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 338s Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 338s Setting up libxaw7:s390x (2:1.0.14-1) ... 338s Setting up gcc (4:13.2.0-7ubuntu1) ... 338s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 338s Setting up r-base-core (4.3.2-1build1) ... 338s 338s Creating config file /etc/R/Renviron with new version 338s Setting up r-cran-crayon (1.5.2-1) ... 338s Setting up r-cran-sourcetools (0.1.7-1-1) ... 338s Setting up r-cran-futile.options (1.0.1-3build1) ... 338s Setting up r-cran-lattice (0.22-5-1) ... 338s Setting up r-cran-formatr (1.14-1) ... 338s Setting up r-cran-xml (3.99-0.16.1-1) ... 338s Setting up g++ (4:13.2.0-7ubuntu1) ... 338s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 338s Setting up texlive-binaries (2023.20230311.66589-9) ... 338s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 338s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 338s Setting up build-essential (12.10ubuntu1) ... 338s Setting up r-cran-commonmark (1.9.1-1) ... 338s Setting up r-cran-r6 (2.5.1-1) ... 338s Setting up r-cran-pkgkitten (0.2.3-1) ... 338s Setting up texlive-base (2023.20240207-1) ... 339s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 339s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 339s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 339s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 340s Setting up r-cran-magrittr (2.0.3-1) ... 340s Setting up r-cran-rappdirs (0.3.3-1) ... 340s Setting up r-cran-filelock (1.0.3-1) ... 340s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 340s Setting up r-cran-littler (0.3.19-1) ... 340s Setting up r-cran-bh (1.84.0-1) ... 340s Setting up r-cran-fs (1.6.3+dfsg-1) ... 340s Setting up r-cran-rcpp (1.0.12-1) ... 340s Setting up r-cran-curl (5.2.0+dfsg-1) ... 340s Setting up r-cran-codetools (0.2-19-1) ... 340s Setting up r-bioc-biocgenerics (0.48.1-2) ... 340s Setting up r-cran-rlang (1.1.3-1) ... 340s Setting up r-cran-matrixstats (1.2.0-1) ... 340s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 340s Setting up r-cran-xfun (0.41+dfsg-1) ... 340s Setting up r-cran-sys (3.4.2-1) ... 340s Setting up r-cran-plogr (0.2.0-3build1) ... 340s Setting up r-cran-withr (2.5.0-1) ... 340s Setting up r-cran-mime (0.12-1) ... 340s Setting up r-cran-generics (0.1.3-1) ... 340s Setting up r-cran-base64enc (0.1-3-3) ... 340s Setting up r-cran-abind (1.4-5-2) ... 340s Setting up r-cran-digest (0.6.34-1) ... 340s Setting up r-cran-yaml (2.3.8-1) ... 340s Setting up r-cran-lambda.r (1.2.4-2build1) ... 340s Setting up r-cran-evaluate (0.23-1) ... 340s Setting up r-cran-dbi (1.2.2-1) ... 340s Setting up r-cran-highr (0.10+dfsg-1) ... 340s Setting up r-cran-prettyunits (1.2.0-1) ... 340s Setting up r-cran-fansi (1.0.5-1) ... 340s Setting up r-cran-snow (1:0.4.4-2) ... 340s Setting up r-cran-glue (1.7.0-1) ... 340s Setting up r-cran-bit (4.0.5-1) ... 340s Setting up r-cran-xtable (1:1.8-4-2) ... 340s Setting up r-cran-cli (3.6.2-1) ... 340s Setting up gfortran (4:13.2.0-7ubuntu1) ... 340s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 340s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 340s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 340s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 340s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 340s Setting up r-cran-bitops (1.0-7-1) ... 340s Setting up r-cran-bit64 (4.0.5-1) ... 340s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 340s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 340s Setting up r-cran-askpass (1.2.0-1) ... 340s Setting up r-cran-fastmap (1.1.1-1) ... 340s Setting up r-cran-png (0.1-8-1) ... 340s Setting up r-bioc-biobase (2.62.0-1) ... 340s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 340s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 340s Setting up r-cran-utf8 (1.2.4-1) ... 340s Setting up r-cran-stringi (1.8.3-1) ... 340s Setting up texlive-latex-base (2023.20240207-1) ... 340s Setting up r-cran-cpp11 (0.4.7-1) ... 340s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 340s Setting up r-cran-runit (0.4.32-3) ... 340s Setting up r-cran-futile.logger (1.4.3-4build1) ... 340s Setting up r-cran-later (1.3.2+dfsg-1) ... 340s Setting up r-cran-matrix (1.6-5-1) ... 340s Setting up r-cran-tinytex (0.49-1) ... 340s Setting up r-cran-knitr (1.45+dfsg-1) ... 340s Setting up r-cran-cachem (1.0.8-1) ... 340s Setting up r-bioc-iranges (2.36.0-1) ... 340s Setting up r-cran-rjson (0.2.21-1) ... 340s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 340s Setting up r-cran-restfulr (0.0.15-1) ... 340s Setting up r-cran-vctrs (0.6.5-1) ... 340s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 340s Setting up r-cran-ellipsis (0.3.2-2) ... 340s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 340s Setting up r-base-dev (4.3.2-1build1) ... 340s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 340s Setting up r-cran-stringr (1.5.1-1) ... 340s Setting up r-bioc-biocparallel (1.36.0-1) ... 340s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 340s Setting up r-cran-xml2 (1.3.6-1) ... 340s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 340s Setting up r-cran-survival (3.5-8-1) ... 340s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 340s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 340s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ... 340s Setting up texlive-bibtex-extra (2023.20240207-1) ... 340s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 340s Setting up r-cran-httr (1.4.7+dfsg-1) ... 340s Setting up r-cran-hms (1.1.3-1) ... 340s Setting up r-cran-memoise (2.0.1-1) ... 340s Setting up r-cran-promises (1.2.1+dfsg-1) ... 340s Setting up r-cran-purrr (1.0.2-1) ... 340s Setting up r-cran-blob (1.2.4-1) ... 340s Setting up r-cran-htmltools (0.5.7-1) ... 340s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 340s Setting up r-bioc-xvector (0.42.0-1) ... 340s Setting up r-cran-sass (0.4.8+dfsg-1) ... 340s Setting up r-cran-dplyr (1.1.4-1) ... 340s Setting up r-cran-rsqlite (2.3.4-1) ... 340s Setting up r-cran-progress (1.2.3-1) ... 340s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 340s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 340s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 340s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 340s Setting up r-cran-fontawesome (0.5.2-1) ... 340s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 340s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 340s Setting up r-cran-tidyr (1.3.1-1) ... 340s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 340s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 340s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 340s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 340s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 340s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 340s Setting up r-bioc-annotationdbi (1.64.1-1) ... 340s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 340s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 340s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 340s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 340s Setting up r-bioc-genefilter (1.84.0-1) ... 340s Setting up r-bioc-genomicalignments (1.38.2-1) ... 340s Setting up r-cran-bookdown (0.37+dfsg-1) ... 340s Setting up r-bioc-rtracklayer (1.62.0-1) ... 340s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 340s Setting up r-bioc-bsgenome (1.70.2-1) ... 340s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 340s Setting up r-bioc-variantannotation (1.48.1-1) ... 340s Setting up r-bioc-genomicfiles (1.38.0+dfsg-1) ... 340s Setting up autopkgtest-satdep (0) ... 340s Processing triggers for man-db (2.12.0-3) ... 341s Processing triggers for install-info (7.1-3) ... 341s Processing triggers for libc-bin (2.39-0ubuntu2) ... 341s Processing triggers for tex-common (6.18) ... 341s Running updmap-sys. This may take some time... done. 341s Running mktexlsr /var/lib/texmf ... done. 341s Building format(s) --all. 386s This may take some time... done. 393s (Reading database ... 101943 files and directories currently installed.) 393s Removing autopkgtest-satdep (0) ... 394s autopkgtest [18:38:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 394s autopkgtest [18:38:36]: test pkg-r-autopkgtest: [----------------------- 394s Test: Try to load the R library GenomicFiles 394s 394s R version 4.3.2 (2023-10-31) -- "Eye Holes" 394s Copyright (C) 2023 The R Foundation for Statistical Computing 394s Platform: s390x-ibm-linux-gnu (64-bit) 394s 394s R is free software and comes with ABSOLUTELY NO WARRANTY. 394s You are welcome to redistribute it under certain conditions. 394s Type 'license()' or 'licence()' for distribution details. 394s 394s R is a collaborative project with many contributors. 394s Type 'contributors()' for more information and 394s 'citation()' on how to cite R or R packages in publications. 394s 394s Type 'demo()' for some demos, 'help()' for on-line help, or 394s 'help.start()' for an HTML browser interface to help. 394s Type 'q()' to quit R. 394s 394s > library('GenomicFiles') 394s Loading required package: BiocGenerics 394s 394s Attaching package: ‘BiocGenerics’ 394s 394s The following objects are masked from ‘package:stats’: 394s 394s IQR, mad, sd, var, xtabs 394s 394s The following objects are masked from ‘package:base’: 394s 394s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 394s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 394s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 394s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 394s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 394s table, tapply, union, unique, unsplit, which.max, which.min 394s 394s Loading required package: MatrixGenerics 394s Loading required package: matrixStats 395s 395s Attaching package: ‘MatrixGenerics’ 395s 395s The following objects are masked from ‘package:matrixStats’: 395s 395s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 395s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 395s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 395s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 395s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 395s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 395s colWeightedMeans, colWeightedMedians, colWeightedSds, 395s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 395s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 395s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 395s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 395s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 395s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 395s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 395s rowWeightedSds, rowWeightedVars 395s 395s Loading required package: GenomicRanges 395s Loading required package: stats4 395s Loading required package: S4Vectors 395s 395s Attaching package: ‘S4Vectors’ 395s 395s The following object is masked from ‘package:utils’: 395s 395s findMatches 395s 395s The following objects are masked from ‘package:base’: 395s 395s expand.grid, I, unname 395s 395s Loading required package: IRanges 396s Loading required package: GenomeInfoDb 397s Loading required package: SummarizedExperiment 397s Loading required package: Biobase 397s Welcome to Bioconductor 397s 397s Vignettes contain introductory material; view with 397s 'browseVignettes()'. To cite Bioconductor, see 397s 'citation("Biobase")', and for packages 'citation("pkgname")'. 397s 397s 397s Attaching package: ‘Biobase’ 397s 397s The following object is masked from ‘package:MatrixGenerics’: 397s 397s rowMedians 397s 397s The following objects are masked from ‘package:matrixStats’: 397s 397s anyMissing, rowMedians 397s 400s Loading required package: BiocParallel 400s Loading required package: Rsamtools 400s Loading required package: Biostrings 400s Loading required package: XVector 401s 401s Attaching package: ‘Biostrings’ 401s 401s The following object is masked from ‘package:base’: 401s 401s strsplit 401s 401s Loading required package: rtracklayer 407s > Warning message: 407s package ‘Rsamtools’ was built under R version 4.3.3 407s 407s > 407s Other tests are currently unsupported! 407s They will be progressively added. 407s autopkgtest [18:38:49]: test pkg-r-autopkgtest: -----------------------] 408s autopkgtest [18:38:50]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 408s pkg-r-autopkgtest PASS 408s autopkgtest [18:38:50]: @@@@@@@@@@@@@@@@@@@@ summary 408s pkg-r-autopkgtest PASS 426s Creating nova instance adt-noble-s390x-r-bioc-genomicfiles-20240316-183201-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...