0s autopkgtest [18:31:38]: starting date and time: 2024-03-16 18:31:38+0000 0s autopkgtest [18:31:38]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:31:38]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4k29ksdt/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-genomicalignments --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-9.secgroup --name adt-noble-s390x-r-bioc-genomicalignments-20240316-183138-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 290s autopkgtest [18:36:28]: testbed dpkg architecture: s390x 290s autopkgtest [18:36:28]: testbed apt version: 2.7.12 290s autopkgtest [18:36:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 291s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 292s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 292s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 292s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 292s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 292s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB] 292s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 292s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 292s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 292s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3752 kB] 292s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 292s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB] 292s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 294s Fetched 8760 kB in 2s (3777 kB/s) 294s Reading package lists... 297s Reading package lists... 297s Building dependency tree... 297s Reading state information... 298s Calculating upgrade... 298s The following packages will be REMOVED: 298s libssl3 298s The following NEW packages will be installed: 298s libssl3t64 298s The following packages have been kept back: 298s curl 298s The following packages will be upgraded: 298s openssl ubuntu-minimal ubuntu-standard 298s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 298s Need to get 2680 kB of archives. 298s After this operation, 23.6 kB of additional disk space will be used. 298s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 298s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 298s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB] 298s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB] 299s Fetched 2680 kB in 1s (3947 kB/s) 299s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 299s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 299s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 299s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 299s wget depends on libssl3 (>= 3.0.0). 299s tnftp depends on libssl3 (>= 3.0.0). 299s tcpdump depends on libssl3 (>= 3.0.0). 299s systemd-resolved depends on libssl3 (>= 3.0.0). 299s systemd depends on libssl3 (>= 3.0.0). 299s sudo depends on libssl3 (>= 3.0.0). 299s s390-tools depends on libssl3 (>= 3.0.0). 299s rsync depends on libssl3 (>= 3.0.0). 299s python3-cryptography depends on libssl3 (>= 3.0.0). 299s openssh-server depends on libssl3 (>= 3.0.10). 299s openssh-client depends on libssl3 (>= 3.0.10). 299s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 299s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 299s libssh-4:s390x depends on libssl3 (>= 3.0.0). 299s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 299s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 299s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 299s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 299s libnvme1 depends on libssl3 (>= 3.0.0). 299s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 299s libkmod2:s390x depends on libssl3 (>= 3.0.0). 299s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 299s libcurl4:s390x depends on libssl3 (>= 3.0.0). 299s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 299s kmod depends on libssl3 (>= 3.0.0). 299s dhcpcd-base depends on libssl3 (>= 3.0.0). 299s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 299s 299s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 299s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 299s Selecting previously unselected package libssl3t64:s390x. 299s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 299s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 299s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 299s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ... 299s Unpacking ubuntu-minimal (1.536) over (1.535) ... 299s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ... 299s Unpacking ubuntu-standard (1.536) over (1.535) ... 299s Setting up ubuntu-minimal (1.536) ... 299s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 299s Setting up ubuntu-standard (1.536) ... 299s Setting up openssl (3.0.13-0ubuntu1) ... 299s Processing triggers for man-db (2.12.0-3) ... 299s Processing triggers for libc-bin (2.39-0ubuntu2) ... 300s Reading package lists... 300s Building dependency tree... 300s Reading state information... 300s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 301s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 301s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 301s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 301s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 302s Reading package lists... 302s Reading package lists... 302s Building dependency tree... 302s Reading state information... 302s Calculating upgrade... 303s The following packages have been kept back: 303s curl 303s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 303s Reading package lists... 303s Building dependency tree... 303s Reading state information... 303s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 305s autopkgtest [18:36:43]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 306s autopkgtest [18:36:44]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicalignments 307s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicalignments 1.38.2-1 (dsc) [2416 B] 307s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicalignments 1.38.2-1 (tar) [2266 kB] 307s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicalignments 1.38.2-1 (diff) [7556 B] 308s gpgv: Signature made Thu Jan 25 16:02:39 2024 UTC 308s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 308s gpgv: issuer "tille@debian.org" 308s gpgv: Can't check signature: No public key 308s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicalignments_1.38.2-1.dsc: no acceptable signature found 308s autopkgtest [18:36:46]: testing package r-bioc-genomicalignments version 1.38.2-1 308s autopkgtest [18:36:46]: build not needed 309s autopkgtest [18:36:47]: test pkg-r-autopkgtest: preparing testbed 310s Reading package lists... 310s Building dependency tree... 310s Reading state information... 311s Starting pkgProblemResolver with broken count: 0 311s Starting 2 pkgProblemResolver with broken count: 0 311s Done 311s The following additional packages will be installed: 311s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl 311s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 311s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 311s g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 311s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 311s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 311s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 311s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 311s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 311s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 311s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl 311s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 311s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 311s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 311s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 311s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 311s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 311s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 311s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 311s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 311s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 311s libpng-dev libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 311s libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 311s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 311s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 311s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 311s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 311s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 311s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 311s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 311s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 311s r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 311s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 311s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 311s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 311s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 311s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 311s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 311s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 311s r-cran-cachem r-cran-cli r-cran-codetools r-cran-colorspace 311s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 311s r-cran-dbplyr r-cran-deldir r-cran-digest r-cran-dplyr r-cran-ellipsis 311s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 311s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 311s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 311s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 311s r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg 311s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 311s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 311s r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass 311s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 311s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig 311s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 311s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 311s r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl 311s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 311s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 311s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 311s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 311s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 311s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 311s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 311s x11-common xdg-utils zip zlib1g-dev 311s Suggested packages: 311s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 311s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 311s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 311s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 311s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 311s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 311s libboost-context1.83-dev libboost-contract1.83-dev 311s libboost-coroutine1.83-dev libboost-date-time1.83-dev 311s libboost-exception1.83-dev libboost-fiber1.83-dev 311s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 311s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 311s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 311s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 311s libboost-numpy1.83-dev libboost-program-options1.83-dev 311s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 311s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 311s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 311s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 311s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 311s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 311s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 311s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 311s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 311s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 311s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 311s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 311s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 311s r-bioc-affy r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 311s r-bioc-variantannotation r-cran-batchtools r-cran-data.table r-cran-mockery 311s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 311s r-bioc-delayedmatrixstats r-cran-pheatmap r-bioc-tximport r-bioc-tximeta 311s r-bioc-tximportdata r-cran-readr r-cran-pbapply r-bioc-glmgampoi 311s r-bioc-rhdf5 r-cran-seuratobject r-cran-r.utils r-bioc-ensembldb 311s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-annotationhub 311s r-bioc-dexseq r-cran-biasedurn r-cran-ellipse r-cran-gplots 311s r-bioc-sparsematrixstats r-cran-roxygen2 r-cran-ff r-cran-covr 311s r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs 311s r-cran-viridis r-cran-rstudioapi r-cran-rmysql r-cran-polyclip 311s r-cran-lubridate r-cran-sp r-cran-gridextra r-cran-scatterplot3d 311s r-cran-magick r-cran-sf r-cran-getopt r-cran-gam r-cran-formattable 311s r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units 311s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-spelling 311s r-cran-bench r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild 311s r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript gv 311s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 311s texlive-latex-base-doc wp2latex 311s Recommended packages: 311s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 311s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 311s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 311s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-thematic 311s r-cran-callr r-cran-covr r-cran-mockery r-cran-processx r-cran-ps 311s r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio r-cran-decor 311s r-cran-desc r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-rpostgresql 311s r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-survival 311s r-cran-pkgload r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps 311s r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart 311s r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-waldo r-cran-cairo 311s r-cran-markdown r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick 311s r-cran-reticulate r-cran-rgl r-cran-tikzdevice node-highlight.js 311s r-cran-lintr r-cran-tidyverse r-cran-r.devices r-cran-sodium 311s r-cran-lubridate r-cran-future r-cran-usethis r-cran-dygraphs r-cran-dbitest 311s r-cran-gert r-cran-gh r-cran-rvest r-cran-dichromat r-cran-data.table 311s r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 311s lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 311s x11-utils x11-xserver-utils 311s The following packages will be REMOVED: 311s libcurl4 libpsl5 311s The following NEW packages will be installed: 311s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 311s cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config 311s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 311s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 311s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 311s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 311s gfortran-s390x-linux-gnu icu-devtools javascript-common libasan8 libatomic1 311s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 311s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 311s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev 311s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 311s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 311s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 311s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 311s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 311s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 311s libjs-popper.js libjs-prettify libjs-sifter.js 311s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 311s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 311s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 311s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 311s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 311s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 311s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 311s libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 311s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 311s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 311s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 311s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 311s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 311s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 311s r-bioc-delayedarray r-bioc-deseq2 r-bioc-edger r-bioc-genomeinfodb 311s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 311s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma 311s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 311s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 311s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 311s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 311s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 311s r-cran-cachem r-cran-cli r-cran-codetools r-cran-colorspace 311s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 311s r-cran-dbplyr r-cran-deldir r-cran-digest r-cran-dplyr r-cran-ellipsis 311s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 311s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 311s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 311s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 311s r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg 311s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 311s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 311s r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass 311s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 311s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig 311s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 311s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 311s r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl 311s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 311s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 311s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 311s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 311s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 311s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 311s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 311s x11-common xdg-utils zip zlib1g-dev 311s The following packages will be upgraded: 311s curl 311s 1 upgraded, 302 newly installed, 2 to remove and 0 not upgraded. 311s Need to get 466 MB/466 MB of archives. 311s After this operation, 1455 MB of additional disk space will be used. 311s Get:1 /tmp/autopkgtest.SWOuAq/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [796 B] 311s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB] 312s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB] 312s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB] 312s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 312s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 312s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 312s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 312s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 312s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 312s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 312s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 312s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 312s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 312s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 312s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 312s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 312s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 312s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 312s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 312s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 312s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 313s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 313s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 313s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 313s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 313s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 313s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 313s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 313s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 313s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 313s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 313s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 313s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 313s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 313s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 313s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 313s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 313s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 313s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 313s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 313s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 313s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 313s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 314s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 314s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 314s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 314s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 314s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 314s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 314s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 314s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 314s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 314s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 314s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 314s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 314s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 314s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 314s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 314s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 314s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 314s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 314s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 314s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 314s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 314s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 314s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 314s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 314s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 314s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 314s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 314s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 314s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 315s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 315s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 315s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 315s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 315s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 315s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 315s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 315s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 315s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 315s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 315s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 315s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 315s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 315s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 315s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 315s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 315s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 315s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 315s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 315s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 315s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9 [66.4 kB] 315s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 315s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 315s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 315s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 315s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 315s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 315s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 315s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 315s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 315s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 315s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 315s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 316s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 316s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 316s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 316s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 316s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 316s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 316s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 316s Get:114 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9 [41.6 kB] 316s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 316s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 316s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 316s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9 [65.0 kB] 316s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 316s Get:120 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 316s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9 [132 kB] 316s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 316s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 316s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 316s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 316s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 316s Get:127 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 316s Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 316s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3 [49.3 kB] 316s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 316s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1 [186 kB] 316s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 316s Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13 s390x 0.13.72+dfsg.1-1.1 [26.1 kB] 316s Get:134 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 316s Get:135 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 316s Get:136 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 316s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 317s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 317s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x littler all 0.3.19-1 [2472 B] 317s Get:140 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 317s Get:141 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 317s Get:142 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 317s Get:143 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 317s Get:144 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 319s Get:145 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 319s Get:146 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 319s Get:147 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 319s Get:148 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 319s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 319s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 319s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 319s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 319s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 319s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 319s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 319s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 319s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 319s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 319s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 319s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 319s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 319s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 319s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 319s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 319s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 319s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 319s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 319s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 319s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 319s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 319s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB] 320s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 320s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 320s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 320s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 320s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB] 320s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 320s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 320s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB] 320s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 320s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 320s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 320s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1 [794 kB] 320s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 320s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 320s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 320s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 321s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 321s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 321s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 321s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 321s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 321s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 321s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 321s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 321s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 321s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 321s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 321s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 321s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 321s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 321s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 321s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 321s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 322s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 322s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 322s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 322s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 322s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 322s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 322s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 322s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 322s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 322s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 322s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 322s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 322s Get:217 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 322s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 322s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 322s Get:220 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 322s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 322s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 322s Get:223 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 322s Get:224 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 322s Get:225 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 322s Get:226 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 322s Get:227 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 322s Get:228 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 322s Get:229 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 323s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 323s Get:231 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 323s Get:232 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 323s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 323s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 323s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 323s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 323s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1 [519 kB] 323s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 323s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 323s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 323s Get:241 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 323s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 323s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 323s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 323s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 323s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 323s Get:247 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 323s Get:248 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9 [9353 kB] 324s Get:249 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 325s Get:250 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 325s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 328s Get:252 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 328s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 328s Get:254 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 328s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 328s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 328s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 329s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 329s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 329s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-1 [1410 kB] 329s Get:261 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1build1 [3700 kB] 329s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 329s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 329s Get:264 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 329s Get:265 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 329s Get:266 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 329s Get:267 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 329s Get:268 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 329s Get:269 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 329s Get:270 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 329s Get:271 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 329s Get:272 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 329s Get:273 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 329s Get:274 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 330s Get:275 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-bsgenome all 1.70.2-1 [6975 kB] 330s Get:276 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-locfit s390x 1.5-9.8-1 [511 kB] 330s Get:277 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 330s Get:278 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB] 330s Get:279 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 330s Get:280 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-nlme s390x 3.1.164-1 [2268 kB] 330s Get:281 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 330s Get:282 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-farver s390x 2.1.1-1 [1347 kB] 330s Get:283 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB] 330s Get:284 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-colorspace s390x 2.1-0+dfsg-1 [1540 kB] 330s Get:285 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-munsell all 0.5.0-2build1 [208 kB] 330s Get:286 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 330s Get:287 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB] 331s Get:288 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-scales all 1.3.0-1 [603 kB] 331s Get:289 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 331s Get:290 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpparmadillo s390x 0.12.8.0.0-1 [869 kB] 331s Get:291 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-deseq2 s390x 1.42.0+dfsg-1 [1235 kB] 331s Get:292 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB] 331s Get:293 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-limma s390x 3.58.1+dfsg-1 [1900 kB] 331s Get:294 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-edger s390x 4.0.16+dfsg-1 [1157 kB] 331s Get:295 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 331s Get:296 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hwriter all 1.3.2.1-1 [106 kB] 331s Get:297 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jpeg s390x 0.1-10-1 [31.3 kB] 331s Get:298 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-deldir s390x 2.0-4-1 [271 kB] 331s Get:299 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcppeigen s390x 0.3.3.9.4-1 [1187 kB] 331s Get:300 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-interp s390x 1.1-6-1 [1465 kB] 331s Get:301 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-latticeextra all 0.6-30-1 [2198 kB] 331s Get:302 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-shortread s390x 1.60.0-2 [5204 kB] 332s Get:303 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-runit all 0.4.32-3 [283 kB] 332s Preconfiguring packages ... 332s Fetched 466 MB in 20s (22.9 MB/s) 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 333s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ... 333s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 333s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested: 333s wget depends on libpsl5 (>= 0.16.0). 333s libcurl4:s390x depends on libpsl5 (>= 0.16.0). 333s libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0). 333s 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 333s Removing libpsl5:s390x (0.21.2-1build1) ... 333s Selecting previously unselected package libpsl5t64:s390x. 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52168 files and directories currently installed.) 333s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ... 333s Unpacking libpsl5t64:s390x (0.21.2-1.1) ... 333s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested: 333s s390-tools depends on libcurl4 (>= 7.16.2). 333s 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52174 files and directories currently installed.) 333s Removing libcurl4:s390x (8.5.0-2ubuntu2) ... 333s Selecting previously unselected package libcurl4t64:s390x. 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52169 files and directories currently installed.) 333s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ... 333s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ... 333s Selecting previously unselected package libc-dev-bin. 333s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 333s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 333s Selecting previously unselected package linux-libc-dev:s390x. 333s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ... 333s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 333s Selecting previously unselected package libcrypt-dev:s390x. 333s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 333s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 333s Selecting previously unselected package libtirpc-dev:s390x. 333s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 333s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 333s Selecting previously unselected package libnsl-dev:s390x. 333s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ... 333s Unpacking libnsl-dev:s390x (1.3.0-3) ... 333s Selecting previously unselected package rpcsvc-proto. 333s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 333s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 333s Selecting previously unselected package libc6-dev:s390x. 333s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ... 333s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 333s Selecting previously unselected package libisl23:s390x. 333s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ... 333s Unpacking libisl23:s390x (0.26-3) ... 333s Selecting previously unselected package libmpc3:s390x. 333s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ... 333s Unpacking libmpc3:s390x (1.3.1-1) ... 333s Selecting previously unselected package cpp-13-s390x-linux-gnu. 333s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 333s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 333s Selecting previously unselected package cpp-13. 333s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 333s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 333s Selecting previously unselected package cpp-s390x-linux-gnu. 333s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 333s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 333s Selecting previously unselected package cpp. 333s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 333s Unpacking cpp (4:13.2.0-7ubuntu1) ... 333s Selecting previously unselected package libcc1-0:s390x. 333s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 333s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 333s Selecting previously unselected package libgomp1:s390x. 333s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 333s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 333s Selecting previously unselected package libitm1:s390x. 333s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ... 333s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 333s Selecting previously unselected package libatomic1:s390x. 333s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 333s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 333s Selecting previously unselected package libasan8:s390x. 333s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ... 333s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 333s Selecting previously unselected package libubsan1:s390x. 333s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 333s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 334s Selecting previously unselected package libgcc-13-dev:s390x. 334s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 334s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 334s Selecting previously unselected package gcc-13-s390x-linux-gnu. 334s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 334s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 334s Selecting previously unselected package gcc-13. 334s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 334s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 334s Selecting previously unselected package gcc-s390x-linux-gnu. 334s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 334s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 334s Selecting previously unselected package gcc. 334s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 334s Unpacking gcc (4:13.2.0-7ubuntu1) ... 334s Selecting previously unselected package libstdc++-13-dev:s390x. 334s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 334s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 334s Selecting previously unselected package g++-13-s390x-linux-gnu. 334s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 334s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 334s Selecting previously unselected package g++-13. 334s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ... 334s Unpacking g++-13 (13.2.0-17ubuntu2) ... 334s Selecting previously unselected package g++-s390x-linux-gnu. 334s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 334s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 335s Selecting previously unselected package g++. 335s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 335s Unpacking g++ (4:13.2.0-7ubuntu1) ... 335s Selecting previously unselected package build-essential. 335s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ... 335s Unpacking build-essential (12.10ubuntu1) ... 335s Selecting previously unselected package dctrl-tools. 335s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ... 335s Unpacking dctrl-tools (2.24-3build2) ... 335s Selecting previously unselected package libfreetype6:s390x. 335s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 335s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 335s Selecting previously unselected package fonts-dejavu-mono. 335s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 335s Unpacking fonts-dejavu-mono (2.37-8) ... 335s Selecting previously unselected package fonts-dejavu-core. 335s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 335s Unpacking fonts-dejavu-core (2.37-8) ... 335s Selecting previously unselected package fontconfig-config. 335s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 335s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 335s Selecting previously unselected package libfontconfig1:s390x. 335s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 335s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 335s Selecting previously unselected package fontconfig. 335s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 335s Unpacking fontconfig (2.15.0-1ubuntu1) ... 335s Selecting previously unselected package fonts-font-awesome. 335s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 335s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 335s Selecting previously unselected package fonts-glyphicons-halflings. 335s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 335s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 335s Selecting previously unselected package fonts-lmodern. 335s Preparing to unpack .../040-fonts-lmodern_2.005-1_all.deb ... 335s Unpacking fonts-lmodern (2.005-1) ... 335s Selecting previously unselected package fonts-mathjax. 335s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 335s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 335s Selecting previously unselected package libgfortran5:s390x. 335s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 335s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 335s Selecting previously unselected package libgfortran-13-dev:s390x. 335s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 335s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 335s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 335s Preparing to unpack .../044-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 335s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 336s Selecting previously unselected package gfortran-13. 336s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 336s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 336s Selecting previously unselected package gfortran-s390x-linux-gnu. 336s Preparing to unpack .../046-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 336s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 336s Selecting previously unselected package gfortran. 336s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 336s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 336s Selecting previously unselected package icu-devtools. 336s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_s390x.deb ... 336s Unpacking icu-devtools (74.2-1ubuntu1) ... 336s Selecting previously unselected package javascript-common. 336s Preparing to unpack .../049-javascript-common_11+nmu1_all.deb ... 336s Unpacking javascript-common (11+nmu1) ... 336s Selecting previously unselected package libio-string-perl. 336s Preparing to unpack .../050-libio-string-perl_1.08-4_all.deb ... 336s Unpacking libio-string-perl (1.08-4) ... 336s Selecting previously unselected package liblatex-tounicode-perl. 336s Preparing to unpack .../051-liblatex-tounicode-perl_0.54-2_all.deb ... 336s Unpacking liblatex-tounicode-perl (0.54-2) ... 336s Selecting previously unselected package libbibtex-parser-perl. 336s Preparing to unpack .../052-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 336s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 336s Selecting previously unselected package libblas3:s390x. 336s Preparing to unpack .../053-libblas3_3.12.0-3_s390x.deb ... 336s Unpacking libblas3:s390x (3.12.0-3) ... 336s Selecting previously unselected package libblas-dev:s390x. 336s Preparing to unpack .../054-libblas-dev_3.12.0-3_s390x.deb ... 336s Unpacking libblas-dev:s390x (3.12.0-3) ... 336s Selecting previously unselected package libboost1.83-dev:s390x. 336s Preparing to unpack .../055-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 336s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 338s Selecting previously unselected package libboost-dev:s390x. 338s Preparing to unpack .../056-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 338s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 338s Selecting previously unselected package libbz2-dev:s390x. 338s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 338s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 338s Selecting previously unselected package libpixman-1-0:s390x. 338s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_s390x.deb ... 338s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 338s Selecting previously unselected package libxcb-render0:s390x. 338s Preparing to unpack .../059-libxcb-render0_1.15-1_s390x.deb ... 338s Unpacking libxcb-render0:s390x (1.15-1) ... 338s Selecting previously unselected package libxcb-shm0:s390x. 338s Preparing to unpack .../060-libxcb-shm0_1.15-1_s390x.deb ... 338s Unpacking libxcb-shm0:s390x (1.15-1) ... 338s Selecting previously unselected package libxrender1:s390x. 338s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 338s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 338s Selecting previously unselected package libcairo2:s390x. 338s Preparing to unpack .../062-libcairo2_1.18.0-1_s390x.deb ... 338s Unpacking libcairo2:s390x (1.18.0-1) ... 338s Selecting previously unselected package libdatrie1:s390x. 338s Preparing to unpack .../063-libdatrie1_0.2.13-3_s390x.deb ... 338s Unpacking libdatrie1:s390x (0.2.13-3) ... 338s Selecting previously unselected package libdeflate0:s390x. 338s Preparing to unpack .../064-libdeflate0_1.19-1_s390x.deb ... 338s Unpacking libdeflate0:s390x (1.19-1) ... 338s Selecting previously unselected package libgraphite2-3:s390x. 338s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_s390x.deb ... 338s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 338s Selecting previously unselected package libharfbuzz0b:s390x. 338s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_s390x.deb ... 338s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 338s Selecting previously unselected package x11-common. 338s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 338s Unpacking x11-common (1:7.7+23ubuntu2) ... 338s Selecting previously unselected package libice6:s390x. 338s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_s390x.deb ... 338s Unpacking libice6:s390x (2:1.0.10-1build2) ... 338s Selecting previously unselected package libicu-dev:s390x. 338s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_s390x.deb ... 338s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 339s Selecting previously unselected package libjpeg-turbo8:s390x. 339s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 339s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 339s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 339s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 339s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 339s Selecting previously unselected package libjpeg8:s390x. 339s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_s390x.deb ... 339s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 339s Selecting previously unselected package libjpeg8-dev:s390x. 339s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 339s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 339s Selecting previously unselected package libjpeg-dev:s390x. 339s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 339s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 339s Selecting previously unselected package libjs-bootstrap. 339s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 339s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 339s Selecting previously unselected package libjs-popper.js. 339s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6_all.deb ... 339s Unpacking libjs-popper.js (1.16.1+ds-6) ... 339s Selecting previously unselected package libjs-bootstrap4. 339s Preparing to unpack .../077-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 339s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 339s Selecting previously unselected package libjs-d3. 339s Preparing to unpack .../078-libjs-d3_3.5.17-4_all.deb ... 339s Unpacking libjs-d3 (3.5.17-4) ... 339s Selecting previously unselected package libjs-es5-shim. 339s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ... 339s Unpacking libjs-es5-shim (4.6.7-2) ... 339s Selecting previously unselected package libjs-highlight.js. 339s Preparing to unpack .../080-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 339s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 339s Selecting previously unselected package libjs-jquery. 339s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 339s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 339s Selecting previously unselected package libjs-jquery-datatables. 339s Preparing to unpack .../082-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 339s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 339s Selecting previously unselected package libjs-sifter.js. 339s Preparing to unpack .../083-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 339s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 339s Selecting previously unselected package libjs-microplugin.js. 339s Preparing to unpack .../084-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 339s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 339s Selecting previously unselected package libjs-jquery-selectize.js. 339s Preparing to unpack .../085-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb 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(2023.20230311.66589-9) ... 339s Selecting previously unselected package liblapack3:s390x. 339s Preparing to unpack .../091-liblapack3_3.12.0-3_s390x.deb ... 339s Unpacking liblapack3:s390x (3.12.0-3) ... 339s Selecting previously unselected package liblapack-dev:s390x. 339s Preparing to unpack .../092-liblapack-dev_3.12.0-3_s390x.deb ... 339s Unpacking liblapack-dev:s390x (3.12.0-3) ... 339s Selecting previously unselected package liblua5.4-0:s390x. 339s Preparing to unpack .../093-liblua5.4-0_5.4.6-3_s390x.deb ... 339s Unpacking liblua5.4-0:s390x (5.4.6-3) ... 339s Selecting previously unselected package libncurses-dev:s390x. 339s Preparing to unpack .../094-libncurses-dev_6.4+20240113-1ubuntu1_s390x.deb ... 339s Unpacking libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 339s Selecting previously unselected package libthai-data. 339s Preparing to unpack .../095-libthai-data_0.1.29-2_all.deb ... 339s Unpacking libthai-data (0.1.29-2) ... 339s Selecting previously unselected package libthai0:s390x. 339s Preparing to unpack .../096-libthai0_0.1.29-2_s390x.deb ... 339s Unpacking libthai0:s390x (0.1.29-2) ... 339s Selecting previously unselected package libpango-1.0-0:s390x. 339s Preparing to unpack .../097-libpango-1.0-0_1.51.0+ds-4_s390x.deb ... 339s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ... 339s Selecting previously unselected package libpangoft2-1.0-0:s390x. 339s Preparing to unpack .../098-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ... 339s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 339s Selecting previously unselected package libpangocairo-1.0-0:s390x. 339s Preparing to unpack .../099-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 339s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 339s Selecting previously unselected package libpaper1:s390x. 339s Preparing to unpack .../100-libpaper1_1.1.29_s390x.deb ... 339s Unpacking libpaper1:s390x (1.1.29) ... 339s Selecting previously unselected package libpaper-utils. 340s Preparing to unpack .../101-libpaper-utils_1.1.29_s390x.deb ... 340s Unpacking libpaper-utils (1.1.29) ... 340s Selecting previously unselected package libpcre2-16-0:s390x. 340s Preparing to unpack .../102-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ... 340s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ... 340s Selecting previously unselected package libpcre2-32-0:s390x. 340s Preparing to unpack .../103-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ... 340s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ... 340s Selecting previously unselected package libpcre2-posix3:s390x. 340s Preparing to unpack .../104-libpcre2-posix3_10.42-4ubuntu1_s390x.deb ... 340s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ... 340s Selecting previously unselected package libpcre2-dev:s390x. 340s Preparing to unpack .../105-libpcre2-dev_10.42-4ubuntu1_s390x.deb ... 340s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ... 340s Selecting previously unselected package libpkgconf3:s390x. 340s Preparing to unpack .../106-libpkgconf3_1.8.1-2_s390x.deb ... 340s Unpacking libpkgconf3:s390x (1.8.1-2) ... 340s Selecting previously unselected package zlib1g-dev:s390x. 340s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 340s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 340s Selecting previously unselected package libpng-dev:s390x. 340s Preparing to unpack .../108-libpng-dev_1.6.43-1_s390x.deb ... 340s Unpacking libpng-dev:s390x (1.6.43-1) ... 340s Selecting previously unselected package libpotrace0:s390x. 340s Preparing to unpack .../109-libpotrace0_1.16-2_s390x.deb ... 340s Unpacking libpotrace0:s390x (1.16-2) ... 340s Selecting previously unselected package libptexenc1:s390x. 340s Preparing to unpack .../110-libptexenc1_2023.20230311.66589-9_s390x.deb ... 340s Unpacking libptexenc1:s390x (2023.20230311.66589-9) ... 340s Selecting previously unselected package libreadline-dev:s390x. 340s Preparing to unpack .../111-libreadline-dev_8.2-3_s390x.deb ... 340s Unpacking libreadline-dev:s390x (8.2-3) ... 340s Selecting previously unselected package libsharpyuv0:s390x. 340s Preparing to unpack .../112-libsharpyuv0_1.3.2-0.4_s390x.deb ... 340s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 340s Selecting previously unselected package libsm6:s390x. 340s Preparing to unpack .../113-libsm6_2%3a1.2.3-1build2_s390x.deb ... 340s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 340s Selecting previously unselected package libsynctex2:s390x. 340s Preparing to unpack .../114-libsynctex2_2023.20230311.66589-9_s390x.deb ... 340s Unpacking libsynctex2:s390x (2023.20230311.66589-9) ... 340s Selecting previously unselected package libtcl8.6:s390x. 340s Preparing to unpack .../115-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 340s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 340s Selecting previously unselected package libteckit0:s390x. 340s Preparing to unpack .../116-libteckit0_2.5.12+ds1-1_s390x.deb ... 340s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 340s Selecting previously unselected package libtexlua53-5:s390x. 340s Preparing to unpack .../117-libtexlua53-5_2023.20230311.66589-9_s390x.deb ... 340s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9) ... 340s Selecting previously unselected package libjbig0:s390x. 340s Preparing to unpack .../118-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 340s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 340s Selecting previously unselected package libwebp7:s390x. 340s Preparing to unpack .../119-libwebp7_1.3.2-0.4_s390x.deb ... 340s Unpacking libwebp7:s390x (1.3.2-0.4) ... 340s Selecting previously unselected package libtiff6:s390x. 340s Preparing to unpack .../120-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 340s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 340s Selecting previously unselected package libxft2:s390x. 340s Preparing to unpack .../121-libxft2_2.3.6-1_s390x.deb ... 340s Unpacking libxft2:s390x (2.3.6-1) ... 340s Selecting previously unselected package libxss1:s390x. 340s Preparing to unpack .../122-libxss1_1%3a1.2.3-1build2_s390x.deb ... 340s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 340s Selecting previously unselected package libtk8.6:s390x. 340s Preparing to unpack .../123-libtk8.6_8.6.13-2_s390x.deb ... 340s Unpacking libtk8.6:s390x (8.6.13-2) ... 340s Selecting previously unselected package libxt6:s390x. 340s Preparing to unpack .../124-libxt6_1%3a1.2.1-1.1_s390x.deb ... 340s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 340s Selecting previously unselected package libxmu6:s390x. 340s Preparing to unpack .../125-libxmu6_2%3a1.1.3-3_s390x.deb ... 340s Unpacking libxmu6:s390x (2:1.1.3-3) ... 340s Selecting previously unselected package libxpm4:s390x. 340s Preparing to unpack .../126-libxpm4_1%3a3.5.17-1_s390x.deb ... 340s Unpacking libxpm4:s390x (1:3.5.17-1) ... 340s Selecting previously unselected package libxaw7:s390x. 340s Preparing to unpack .../127-libxaw7_2%3a1.0.14-1_s390x.deb ... 340s Unpacking libxaw7:s390x (2:1.0.14-1) ... 340s Selecting previously unselected package libxi6:s390x. 340s Preparing to unpack .../128-libxi6_2%3a1.8.1-1_s390x.deb ... 340s Unpacking libxi6:s390x (2:1.8.1-1) ... 340s Selecting previously unselected package libzzip-0-13:s390x. 340s Preparing to unpack .../129-libzzip-0-13_0.13.72+dfsg.1-1.1_s390x.deb ... 340s Unpacking libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 340s Selecting previously unselected package zip. 340s Preparing to unpack .../130-zip_3.0-13_s390x.deb ... 340s Unpacking zip (3.0-13) ... 340s Selecting previously unselected package unzip. 340s Preparing to unpack .../131-unzip_6.0-28ubuntu3_s390x.deb ... 340s Unpacking unzip (6.0-28ubuntu3) ... 340s Selecting previously unselected package xdg-utils. 340s Preparing to unpack .../132-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 340s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 340s Selecting previously unselected package r-base-core. 340s Preparing to unpack .../133-r-base-core_4.3.2-1build1_s390x.deb ... 340s Unpacking r-base-core (4.3.2-1build1) ... 341s Selecting previously unselected package r-cran-littler. 341s Preparing to unpack .../134-r-cran-littler_0.3.19-1_s390x.deb ... 341s Unpacking r-cran-littler (0.3.19-1) ... 341s Selecting previously unselected package littler. 341s Preparing to unpack .../135-littler_0.3.19-1_all.deb ... 341s Unpacking littler (0.3.19-1) ... 341s Selecting previously unselected package node-bootstrap-sass. 341s Preparing to unpack .../136-node-bootstrap-sass_3.4.3-2_all.deb ... 341s Unpacking node-bootstrap-sass (3.4.3-2) ... 341s Selecting previously unselected package node-html5shiv. 341s Preparing to unpack .../137-node-html5shiv_3.7.3+dfsg-5_all.deb ... 341s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 341s Selecting previously unselected package node-normalize.css. 341s Preparing to unpack .../138-node-normalize.css_8.0.1-5_all.deb ... 341s Unpacking node-normalize.css (8.0.1-5) ... 341s Selecting previously unselected package pandoc-data. 341s Preparing to unpack .../139-pandoc-data_3.1.3-1_all.deb ... 341s Unpacking pandoc-data (3.1.3-1) ... 341s Selecting previously unselected package pandoc. 341s Preparing to unpack .../140-pandoc_3.1.3+ds-2_s390x.deb ... 341s Unpacking pandoc (3.1.3+ds-2) ... 342s Selecting previously unselected package pkgconf-bin. 342s Preparing to unpack .../141-pkgconf-bin_1.8.1-2_s390x.deb ... 342s Unpacking pkgconf-bin (1.8.1-2) ... 342s Selecting previously unselected package pkgconf:s390x. 342s Preparing to unpack .../142-pkgconf_1.8.1-2_s390x.deb ... 342s Unpacking pkgconf:s390x (1.8.1-2) ... 342s Selecting previously unselected package pkg-config:s390x. 342s Preparing to unpack .../143-pkg-config_1.8.1-2_s390x.deb ... 342s Unpacking pkg-config:s390x (1.8.1-2) ... 342s Selecting previously unselected package liblzma-dev:s390x. 342s Preparing to unpack .../144-liblzma-dev_5.4.5-0.3_s390x.deb ... 342s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 343s Selecting previously unselected package r-base-dev. 343s Preparing to unpack .../145-r-base-dev_4.3.2-1build1_all.deb ... 343s Unpacking r-base-dev (4.3.2-1build1) ... 343s Selecting previously unselected package pkg-r-autopkgtest. 343s Preparing to unpack .../146-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 343s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 343s Selecting previously unselected package r-bioc-biocgenerics. 343s Preparing to unpack .../147-r-bioc-biocgenerics_0.48.1-2_all.deb ... 343s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 343s Selecting previously unselected package r-bioc-biobase. 343s Preparing to unpack .../148-r-bioc-biobase_2.62.0-1_s390x.deb ... 343s Unpacking r-bioc-biobase (2.62.0-1) ... 343s Selecting previously unselected package r-bioc-s4vectors. 343s Preparing to unpack .../149-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 343s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 343s Selecting previously unselected package r-bioc-iranges. 343s Preparing to unpack .../150-r-bioc-iranges_2.36.0-1_s390x.deb ... 343s Unpacking r-bioc-iranges (2.36.0-1) ... 343s Selecting previously unselected package r-cran-dbi. 343s Preparing to unpack .../151-r-cran-dbi_1.2.2-1_all.deb ... 343s Unpacking r-cran-dbi (1.2.2-1) ... 343s Selecting previously unselected package r-cran-bit. 343s Preparing to unpack .../152-r-cran-bit_4.0.5-1_s390x.deb ... 343s Unpacking r-cran-bit (4.0.5-1) ... 343s Selecting previously unselected package r-cran-bit64. 343s Preparing to unpack .../153-r-cran-bit64_4.0.5-1_s390x.deb ... 343s Unpacking r-cran-bit64 (4.0.5-1) ... 343s Selecting previously unselected package r-cran-rlang. 343s Preparing to unpack .../154-r-cran-rlang_1.1.3-1_s390x.deb ... 343s Unpacking r-cran-rlang (1.1.3-1) ... 343s Selecting previously unselected package r-cran-cli. 343s Preparing to unpack .../155-r-cran-cli_3.6.2-1_s390x.deb ... 343s Unpacking r-cran-cli (3.6.2-1) ... 343s Selecting previously unselected package r-cran-glue. 343s Preparing to unpack .../156-r-cran-glue_1.7.0-1_s390x.deb ... 343s Unpacking r-cran-glue (1.7.0-1) ... 343s Selecting previously unselected package r-cran-lifecycle. 343s Preparing to unpack .../157-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 343s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 343s Selecting previously unselected package r-cran-vctrs. 343s Preparing to unpack .../158-r-cran-vctrs_0.6.5-1_s390x.deb ... 343s Unpacking r-cran-vctrs (0.6.5-1) ... 343s Selecting previously unselected package r-cran-blob. 343s Preparing to unpack .../159-r-cran-blob_1.2.4-1_all.deb ... 343s Unpacking r-cran-blob (1.2.4-1) ... 343s Selecting previously unselected package r-cran-fastmap. 343s Preparing to unpack .../160-r-cran-fastmap_1.1.1-1_s390x.deb ... 343s Unpacking r-cran-fastmap (1.1.1-1) ... 343s Selecting previously unselected package r-cran-cachem. 343s Preparing to unpack .../161-r-cran-cachem_1.0.8-1_s390x.deb ... 343s Unpacking r-cran-cachem (1.0.8-1) ... 343s Selecting previously unselected package r-cran-memoise. 343s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ... 343s Unpacking r-cran-memoise (2.0.1-1) ... 343s Selecting previously unselected package r-cran-pkgconfig. 343s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 343s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 343s Selecting previously unselected package r-cran-plogr. 343s Preparing to unpack .../164-r-cran-plogr_0.2.0-3build1_all.deb ... 343s Unpacking r-cran-plogr (0.2.0-3build1) ... 343s Selecting previously unselected package r-cran-cpp11. 343s Preparing to unpack .../165-r-cran-cpp11_0.4.7-1_all.deb ... 343s Unpacking r-cran-cpp11 (0.4.7-1) ... 343s Selecting previously unselected package r-cran-rsqlite. 343s Preparing to unpack .../166-r-cran-rsqlite_2.3.4-1_s390x.deb ... 343s Unpacking r-cran-rsqlite (2.3.4-1) ... 343s Selecting previously unselected package r-cran-curl. 343s Preparing to unpack .../167-r-cran-curl_5.2.0+dfsg-1_s390x.deb ... 343s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 343s Selecting previously unselected package r-cran-jsonlite. 343s Preparing to unpack .../168-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 343s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 343s Selecting previously unselected package r-cran-mime. 343s Preparing to unpack .../169-r-cran-mime_0.12-1_s390x.deb ... 343s Unpacking r-cran-mime (0.12-1) ... 343s Selecting previously unselected package r-cran-sys. 343s Preparing to unpack .../170-r-cran-sys_3.4.2-1_s390x.deb ... 343s Unpacking r-cran-sys (3.4.2-1) ... 343s Selecting previously unselected package r-cran-askpass. 343s Preparing to unpack .../171-r-cran-askpass_1.2.0-1_s390x.deb ... 343s Unpacking r-cran-askpass (1.2.0-1) ... 343s Selecting previously unselected package r-cran-openssl. 343s Preparing to unpack .../172-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ... 343s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 343s Selecting previously unselected package r-cran-r6. 343s Preparing to unpack .../173-r-cran-r6_2.5.1-1_all.deb ... 343s Unpacking r-cran-r6 (2.5.1-1) ... 343s Selecting previously unselected package r-cran-httr. 343s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ... 343s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 343s Selecting previously unselected package r-cran-png. 343s Preparing to unpack .../175-r-cran-png_0.1-8-1_s390x.deb ... 343s Unpacking r-cran-png (0.1-8-1) ... 343s Selecting previously unselected package r-bioc-zlibbioc. 343s Preparing to unpack .../176-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 343s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 343s Selecting previously unselected package r-bioc-xvector. 343s Preparing to unpack .../177-r-bioc-xvector_0.42.0-1_s390x.deb ... 343s Unpacking r-bioc-xvector (0.42.0-1) ... 343s Selecting previously unselected package r-cran-bitops. 343s Preparing to unpack .../178-r-cran-bitops_1.0-7-1_s390x.deb ... 343s Unpacking r-cran-bitops (1.0-7-1) ... 344s Selecting previously unselected package r-cran-rcurl. 344s Preparing to unpack .../179-r-cran-rcurl_1.98-1.14+dfsg-1_s390x.deb ... 344s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 344s Selecting previously unselected package r-bioc-genomeinfodbdata. 344s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 344s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 344s Selecting previously unselected package r-bioc-genomeinfodb. 344s Preparing to unpack .../181-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 344s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 344s Selecting previously unselected package r-cran-crayon. 344s Preparing to unpack .../182-r-cran-crayon_1.5.2-1_all.deb ... 344s Unpacking r-cran-crayon (1.5.2-1) ... 344s Selecting previously unselected package r-bioc-biostrings. 344s Preparing to unpack .../183-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 344s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 344s Selecting previously unselected package r-bioc-keggrest. 344s Preparing to unpack .../184-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 344s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 344s Selecting previously unselected package r-bioc-annotationdbi. 344s Preparing to unpack .../185-r-bioc-annotationdbi_1.64.1-1_all.deb ... 344s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 344s Selecting previously unselected package r-cran-generics. 344s Preparing to unpack .../186-r-cran-generics_0.1.3-1_all.deb ... 344s Unpacking r-cran-generics (0.1.3-1) ... 344s Selecting previously unselected package r-cran-magrittr. 344s Preparing to unpack .../187-r-cran-magrittr_2.0.3-1_s390x.deb ... 344s Unpacking r-cran-magrittr (2.0.3-1) ... 344s Selecting previously unselected package r-cran-fansi. 344s Preparing to unpack .../188-r-cran-fansi_1.0.5-1_s390x.deb ... 344s Unpacking r-cran-fansi (1.0.5-1) ... 344s Selecting previously unselected package r-cran-utf8. 344s Preparing to unpack .../189-r-cran-utf8_1.2.4-1_s390x.deb ... 344s Unpacking r-cran-utf8 (1.2.4-1) ... 344s Selecting previously unselected package r-cran-pillar. 344s Preparing to unpack .../190-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 344s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 344s Selecting previously unselected package r-cran-tibble. 344s Preparing to unpack .../191-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 344s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 344s Selecting previously unselected package r-cran-withr. 344s Preparing to unpack .../192-r-cran-withr_2.5.0-1_all.deb ... 344s Unpacking r-cran-withr (2.5.0-1) ... 344s Selecting previously unselected package r-cran-tidyselect. 344s Preparing to unpack .../193-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 344s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 344s Selecting previously unselected package r-cran-dplyr. 344s Preparing to unpack .../194-r-cran-dplyr_1.1.4-1_s390x.deb ... 344s Unpacking r-cran-dplyr (1.1.4-1) ... 344s Selecting previously unselected package r-cran-purrr. 344s Preparing to unpack .../195-r-cran-purrr_1.0.2-1_s390x.deb ... 344s Unpacking r-cran-purrr (1.0.2-1) ... 344s Selecting previously unselected package r-cran-stringi. 344s Preparing to unpack .../196-r-cran-stringi_1.8.3-1_s390x.deb ... 344s Unpacking r-cran-stringi (1.8.3-1) ... 344s Selecting previously unselected package r-cran-stringr. 344s Preparing to unpack .../197-r-cran-stringr_1.5.1-1_all.deb ... 344s Unpacking r-cran-stringr (1.5.1-1) ... 344s Selecting previously unselected package r-cran-tidyr. 344s Preparing to unpack .../198-r-cran-tidyr_1.3.1-1_s390x.deb ... 344s Unpacking r-cran-tidyr (1.3.1-1) ... 344s Selecting previously unselected package r-cran-dbplyr. 344s Preparing to unpack .../199-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 344s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 344s Selecting previously unselected package r-cran-filelock. 344s Preparing to unpack .../200-r-cran-filelock_1.0.3-1_s390x.deb ... 344s Unpacking r-cran-filelock (1.0.3-1) ... 344s Selecting previously unselected package r-bioc-biocfilecache. 344s Preparing to unpack .../201-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 344s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 344s Selecting previously unselected package r-bioc-biocio. 344s Preparing to unpack .../202-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 344s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 344s Selecting previously unselected package r-cran-formatr. 344s Preparing to unpack .../203-r-cran-formatr_1.14-1_all.deb ... 344s Unpacking r-cran-formatr (1.14-1) ... 344s Selecting previously unselected package r-cran-lambda.r. 344s Preparing to unpack .../204-r-cran-lambda.r_1.2.4-2build1_all.deb ... 344s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 345s Selecting previously unselected package r-cran-futile.options. 345s Preparing to unpack .../205-r-cran-futile.options_1.0.1-3build1_all.deb ... 345s Unpacking r-cran-futile.options (1.0.1-3build1) ... 345s Selecting previously unselected package r-cran-futile.logger. 345s Preparing to unpack .../206-r-cran-futile.logger_1.4.3-4build1_all.deb ... 345s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 345s Selecting previously unselected package r-cran-snow. 345s Preparing to unpack .../207-r-cran-snow_1%3a0.4.4-2_all.deb ... 345s Unpacking r-cran-snow (1:0.4.4-2) ... 345s Selecting previously unselected package r-cran-codetools. 345s Preparing to unpack .../208-r-cran-codetools_0.2-19-1_all.deb ... 345s Unpacking r-cran-codetools (0.2-19-1) ... 345s Selecting previously unselected package r-cran-bh. 345s Preparing to unpack .../209-r-cran-bh_1.84.0-1_all.deb ... 345s Unpacking r-cran-bh (1.84.0-1) ... 345s Selecting previously unselected package r-bioc-biocparallel. 345s Preparing to unpack .../210-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 345s Unpacking r-bioc-biocparallel (1.36.0-1) ... 345s Selecting previously unselected package r-cran-base64enc. 345s Preparing to unpack .../211-r-cran-base64enc_0.1-3-3_s390x.deb ... 345s Unpacking r-cran-base64enc (0.1-3-3) ... 345s Selecting previously unselected package r-cran-digest. 345s Preparing to unpack .../212-r-cran-digest_0.6.34-1_s390x.deb ... 345s Unpacking r-cran-digest (0.6.34-1) ... 345s Selecting previously unselected package r-cran-ellipsis. 345s Preparing to unpack .../213-r-cran-ellipsis_0.3.2-2_s390x.deb ... 345s Unpacking r-cran-ellipsis (0.3.2-2) ... 345s Selecting previously unselected package r-cran-htmltools. 345s Preparing to unpack .../214-r-cran-htmltools_0.5.7-1_s390x.deb ... 345s Unpacking r-cran-htmltools (0.5.7-1) ... 345s Selecting previously unselected package r-cran-evaluate. 345s Preparing to unpack .../215-r-cran-evaluate_0.23-1_all.deb ... 345s Unpacking r-cran-evaluate (0.23-1) ... 345s Selecting previously unselected package r-cran-xfun. 345s Preparing to unpack .../216-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 345s Unpacking r-cran-xfun (0.41+dfsg-1) ... 345s Selecting previously unselected package r-cran-highr. 345s Preparing to unpack .../217-r-cran-highr_0.10+dfsg-1_all.deb ... 345s Unpacking r-cran-highr (0.10+dfsg-1) ... 345s Selecting previously unselected package r-cran-yaml. 345s Preparing to unpack .../218-r-cran-yaml_2.3.8-1_s390x.deb ... 345s Unpacking r-cran-yaml (2.3.8-1) ... 345s Selecting previously unselected package libjs-mathjax. 345s Preparing to unpack .../219-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 345s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 346s Selecting previously unselected package r-cran-knitr. 346s Preparing to unpack .../220-r-cran-knitr_1.45+dfsg-1_all.deb ... 346s Unpacking r-cran-knitr (1.45+dfsg-1) ... 346s Selecting previously unselected package r-cran-jquerylib. 346s Preparing to unpack .../221-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 346s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 346s Selecting previously unselected package r-cran-fs. 346s Preparing to unpack .../222-r-cran-fs_1.6.3+dfsg-1_s390x.deb ... 346s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 346s Selecting previously unselected package r-cran-rappdirs. 346s Preparing to unpack .../223-r-cran-rappdirs_0.3.3-1_s390x.deb ... 346s Unpacking r-cran-rappdirs (0.3.3-1) ... 346s Selecting previously unselected package r-cran-sass. 346s Preparing to unpack .../224-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 346s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 346s Selecting previously unselected package r-cran-bslib. 346s Preparing to unpack .../225-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 346s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 346s Selecting previously unselected package r-cran-fontawesome. 346s Preparing to unpack .../226-r-cran-fontawesome_0.5.2-1_all.deb ... 346s Unpacking r-cran-fontawesome (0.5.2-1) ... 346s Selecting previously unselected package r-cran-tinytex. 346s Preparing to unpack .../227-r-cran-tinytex_0.49-1_all.deb ... 346s Unpacking r-cran-tinytex (0.49-1) ... 346s Selecting previously unselected package libjs-modernizr. 346s Preparing to unpack .../228-libjs-modernizr_2.6.2+ds1-5_all.deb ... 346s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 346s Selecting previously unselected package r-cran-pkgkitten. 346s Preparing to unpack .../229-r-cran-pkgkitten_0.2.3-1_all.deb ... 346s Unpacking r-cran-pkgkitten (0.2.3-1) ... 346s Selecting previously unselected package r-cran-rcpp. 346s Preparing to unpack .../230-r-cran-rcpp_1.0.12-1_s390x.deb ... 346s Unpacking r-cran-rcpp (1.0.12-1) ... 346s Selecting previously unselected package r-cran-later. 346s Preparing to unpack .../231-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 346s Unpacking r-cran-later (1.3.2+dfsg-1) ... 347s Selecting previously unselected package r-cran-promises. 347s Preparing to unpack .../232-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 347s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 347s Selecting previously unselected package r-cran-httpuv. 347s Preparing to unpack .../233-r-cran-httpuv_1.6.14+dfsg-1_s390x.deb ... 347s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 347s Selecting previously unselected package r-cran-xtable. 347s Preparing to unpack .../234-r-cran-xtable_1%3a1.8-4-2_all.deb ... 347s Unpacking r-cran-xtable (1:1.8-4-2) ... 347s Selecting previously unselected package r-cran-sourcetools. 347s Preparing to unpack .../235-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 347s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 347s Selecting previously unselected package r-cran-commonmark. 347s Preparing to unpack .../236-r-cran-commonmark_1.9.1-1_s390x.deb ... 347s Unpacking r-cran-commonmark (1.9.1-1) ... 347s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 347s Preparing to unpack .../237-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 347s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 347s Selecting previously unselected package r-cran-shiny. 347s Preparing to unpack .../238-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 347s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 347s Selecting previously unselected package r-cran-rmarkdown. 347s Preparing to unpack .../239-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 347s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 347s Selecting previously unselected package r-cran-bookdown. 347s Preparing to unpack .../240-r-cran-bookdown_0.37+dfsg-1_all.deb ... 347s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 347s Selecting previously unselected package r-cran-biocmanager. 347s Preparing to unpack .../241-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 347s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 347s Selecting previously unselected package tex-common. 347s Preparing to unpack .../242-tex-common_6.18_all.deb ... 347s Unpacking tex-common (6.18) ... 347s Selecting previously unselected package t1utils. 347s Preparing to unpack .../243-t1utils_1.41-4build2_s390x.deb ... 347s Unpacking t1utils (1.41-4build2) ... 347s Selecting previously unselected package texlive-binaries. 347s Preparing to unpack .../244-texlive-binaries_2023.20230311.66589-9_s390x.deb ... 347s Unpacking texlive-binaries (2023.20230311.66589-9) ... 347s Selecting previously unselected package texlive-base. 347s Preparing to unpack .../245-texlive-base_2023.20240207-1_all.deb ... 347s Unpacking texlive-base (2023.20240207-1) ... 350s Selecting previously unselected package texlive-latex-base. 350s Preparing to unpack .../246-texlive-latex-base_2023.20240207-1_all.deb ... 350s Unpacking texlive-latex-base (2023.20240207-1) ... 350s Selecting previously unselected package texlive-bibtex-extra. 350s Preparing to unpack .../247-texlive-bibtex-extra_2023.20240207-1_all.deb ... 350s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 358s Selecting previously unselected package r-bioc-biocstyle. 358s Preparing to unpack .../248-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 358s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 358s Selecting previously unselected package r-cran-xml. 358s Preparing to unpack .../249-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 358s Unpacking r-cran-xml (3.99-0.16.1-1) ... 358s Selecting previously unselected package r-cran-hms. 358s Preparing to unpack .../250-r-cran-hms_1.1.3-1_all.deb ... 358s Unpacking r-cran-hms (1.1.3-1) ... 358s Selecting previously unselected package r-cran-prettyunits. 358s Preparing to unpack .../251-r-cran-prettyunits_1.2.0-1_all.deb ... 358s Unpacking r-cran-prettyunits (1.2.0-1) ... 358s Selecting previously unselected package r-cran-progress. 358s Preparing to unpack .../252-r-cran-progress_1.2.3-1_all.deb ... 358s Unpacking r-cran-progress (1.2.3-1) ... 358s Selecting previously unselected package r-cran-xml2. 358s Preparing to unpack .../253-r-cran-xml2_1.3.6-1_s390x.deb ... 358s Unpacking r-cran-xml2 (1.3.6-1) ... 358s Selecting previously unselected package r-bioc-biomart. 358s Preparing to unpack .../254-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 358s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 358s Selecting previously unselected package r-bioc-genomicranges. 358s Preparing to unpack .../255-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 358s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 358s Selecting previously unselected package r-bioc-rhtslib. 358s Preparing to unpack .../256-r-bioc-rhtslib_2.4.1+dfsg-1_s390x.deb ... 358s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 358s Selecting previously unselected package r-bioc-rsamtools. 358s Preparing to unpack .../257-r-bioc-rsamtools_2.18.0+dfsg-1build1_s390x.deb ... 358s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 358s Selecting previously unselected package r-cran-matrixstats. 358s Preparing to unpack .../258-r-cran-matrixstats_1.2.0-1_s390x.deb ... 358s Unpacking r-cran-matrixstats (1.2.0-1) ... 358s Selecting previously unselected package r-bioc-matrixgenerics. 358s Preparing to unpack .../259-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 358s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 358s Selecting previously unselected package r-cran-lattice. 358s Preparing to unpack .../260-r-cran-lattice_0.22-5-1_s390x.deb ... 358s Unpacking r-cran-lattice (0.22-5-1) ... 358s Selecting previously unselected package r-cran-matrix. 358s Preparing to unpack .../261-r-cran-matrix_1.6-5-1_s390x.deb ... 358s Unpacking r-cran-matrix (1.6-5-1) ... 358s Selecting previously unselected package r-cran-abind. 358s Preparing to unpack .../262-r-cran-abind_1.4-5-2_all.deb ... 358s Unpacking r-cran-abind (1.4-5-2) ... 358s Selecting previously unselected package r-bioc-s4arrays. 358s Preparing to unpack .../263-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 358s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 358s Selecting previously unselected package r-bioc-sparsearray. 358s Preparing to unpack .../264-r-bioc-sparsearray_1.2.4+dfsg-1_s390x.deb ... 358s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 358s Selecting previously unselected package r-bioc-delayedarray. 358s Preparing to unpack .../265-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ... 358s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 358s Selecting previously unselected package r-bioc-summarizedexperiment. 358s Preparing to unpack .../266-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 358s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 358s Selecting previously unselected package r-bioc-genomicalignments. 358s Preparing to unpack .../267-r-bioc-genomicalignments_1.38.2-1_s390x.deb ... 358s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 358s Selecting previously unselected package r-cran-rjson. 358s Preparing to unpack .../268-r-cran-rjson_0.2.21-1_s390x.deb ... 358s Unpacking r-cran-rjson (0.2.21-1) ... 358s Selecting previously unselected package r-cran-restfulr. 358s Preparing to unpack .../269-r-cran-restfulr_0.0.15-1_s390x.deb ... 358s Unpacking r-cran-restfulr (0.0.15-1) ... 358s Selecting previously unselected package r-bioc-rtracklayer. 358s Preparing to unpack .../270-r-bioc-rtracklayer_1.62.0-1_s390x.deb ... 358s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 359s Selecting previously unselected package r-bioc-bsgenome. 359s Preparing to unpack .../271-r-bioc-bsgenome_1.70.2-1_all.deb ... 359s Unpacking r-bioc-bsgenome (1.70.2-1) ... 359s Selecting previously unselected package r-cran-locfit. 359s Preparing to unpack .../272-r-cran-locfit_1.5-9.8-1_s390x.deb ... 359s Unpacking r-cran-locfit (1.5-9.8-1) ... 359s Selecting previously unselected package r-cran-gtable. 359s Preparing to unpack .../273-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 359s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 359s Selecting previously unselected package r-cran-isoband. 359s Preparing to unpack .../274-r-cran-isoband_0.2.7-1_s390x.deb ... 359s Unpacking r-cran-isoband (0.2.7-1) ... 359s Selecting previously unselected package r-cran-mass. 359s Preparing to unpack .../275-r-cran-mass_7.3-60.0.1-1_s390x.deb ... 359s Unpacking r-cran-mass (7.3-60.0.1-1) ... 359s Selecting previously unselected package r-cran-nlme. 359s Preparing to unpack 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previously unselected package r-cran-rcolorbrewer. 359s Preparing to unpack .../282-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 359s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 359s Selecting previously unselected package r-cran-viridislite. 359s Preparing to unpack .../283-r-cran-viridislite_0.4.2-2_all.deb ... 359s Unpacking r-cran-viridislite (0.4.2-2) ... 359s Selecting previously unselected package r-cran-scales. 359s Preparing to unpack .../284-r-cran-scales_1.3.0-1_all.deb ... 359s Unpacking r-cran-scales (1.3.0-1) ... 359s Selecting previously unselected package r-cran-ggplot2. 359s Preparing to unpack .../285-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 359s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 359s Selecting previously unselected package r-cran-rcpparmadillo. 359s Preparing to unpack .../286-r-cran-rcpparmadillo_0.12.8.0.0-1_s390x.deb ... 359s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 359s Selecting previously unselected package r-bioc-deseq2. 359s Preparing to unpack .../287-r-bioc-deseq2_1.42.0+dfsg-1_s390x.deb ... 359s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 359s Selecting previously unselected package r-cran-statmod. 359s Preparing to unpack .../288-r-cran-statmod_1.5.0-1_s390x.deb ... 359s Unpacking r-cran-statmod (1.5.0-1) ... 359s Selecting previously unselected package r-bioc-limma. 359s Preparing to unpack .../289-r-bioc-limma_3.58.1+dfsg-1_s390x.deb ... 359s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 359s Selecting previously unselected package r-bioc-edger. 359s Preparing to unpack .../290-r-bioc-edger_4.0.16+dfsg-1_s390x.deb ... 359s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 359s Selecting previously unselected package r-bioc-genomicfeatures. 359s Preparing to unpack .../291-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 359s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 359s Selecting previously unselected package r-cran-hwriter. 360s Preparing to unpack .../292-r-cran-hwriter_1.3.2.1-1_all.deb ... 360s Unpacking 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because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 365s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 365s Setting up r-cran-bitops (1.0-7-1) ... 365s Setting up r-cran-bit64 (4.0.5-1) ... 365s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 365s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 365s Setting up r-cran-deldir (2.0-4-1) ... 365s Setting up r-cran-askpass (1.2.0-1) ... 365s Setting up r-cran-fastmap (1.1.1-1) ... 365s Setting up r-cran-png (0.1-8-1) ... 365s Setting up r-bioc-biobase (2.62.0-1) ... 365s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 365s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 365s Setting up r-cran-utf8 (1.2.4-1) ... 365s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 365s Setting up r-cran-stringi (1.8.3-1) ... 365s Setting up texlive-latex-base (2023.20240207-1) ... 365s Setting up r-cran-hwriter (1.3.2.1-1) ... 365s Setting up r-cran-cpp11 (0.4.7-1) ... 365s Setting up r-cran-rcolorbrewer 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... 365s Setting up r-cran-purrr (1.0.2-1) ... 365s Setting up r-cran-blob (1.2.4-1) ... 365s Setting up r-cran-htmltools (0.5.7-1) ... 365s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 365s Setting up r-bioc-xvector (0.42.0-1) ... 365s Setting up r-cran-sass (0.4.8+dfsg-1) ... 365s Setting up r-cran-dplyr (1.1.4-1) ... 365s Setting up r-cran-rsqlite (2.3.4-1) ... 365s Setting up r-cran-progress (1.2.3-1) ... 365s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 365s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 365s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 365s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 365s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 365s Setting up r-cran-fontawesome (0.5.2-1) ... 365s Setting up r-cran-latticeextra (0.6-30-1) ... 365s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 365s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 365s Setting up r-cran-tidyr (1.3.1-1) ... 365s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 365s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 365s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 365s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 365s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 365s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 365s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 365s Setting up r-bioc-annotationdbi (1.64.1-1) ... 365s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 365s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 365s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 365s Setting up r-bioc-genomicalignments (1.38.2-1) ... 365s Setting up r-cran-bookdown (0.37+dfsg-1) ... 365s Setting up r-bioc-rtracklayer (1.62.0-1) ... 365s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 365s Setting up r-bioc-shortread (1.60.0-2) ... 365s Setting up r-bioc-bsgenome (1.70.2-1) ... 365s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 365s Setting up autopkgtest-satdep (0) ... 365s Processing triggers for man-db (2.12.0-3) ... 366s Processing triggers for install-info (7.1-3) ... 366s Processing triggers for libc-bin (2.39-0ubuntu2) ... 366s Processing triggers for tex-common (6.18) ... 366s Running updmap-sys. This may take some time... done. 366s Running mktexlsr /var/lib/texmf ... done. 366s Building format(s) --all. 411s This may take some time... done. 419s (Reading database ... 104730 files and directories currently installed.) 419s Removing autopkgtest-satdep (0) ... 420s autopkgtest [18:38:38]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 420s autopkgtest [18:38:38]: test pkg-r-autopkgtest: [----------------------- 420s Test: Try to load the R library GenomicAlignments 420s 420s R version 4.3.2 (2023-10-31) -- "Eye Holes" 420s Copyright (C) 2023 The R Foundation for Statistical Computing 420s Platform: s390x-ibm-linux-gnu (64-bit) 420s 420s R is free software and comes with ABSOLUTELY NO WARRANTY. 420s You are welcome to redistribute it under certain conditions. 420s Type 'license()' or 'licence()' for distribution details. 420s 420s R is a collaborative project with many contributors. 420s Type 'contributors()' for more information and 420s 'citation()' on how to cite R or R packages in publications. 420s 420s Type 'demo()' for some demos, 'help()' for on-line help, or 420s 'help.start()' for an HTML browser interface to help. 420s Type 'q()' to quit R. 420s 420s Loading required package: BiocGenerics 420s > library('GenomicAlignments') 420s 420s Attaching package: ‘BiocGenerics’ 420s 420s The following objects are masked from ‘package:stats’: 420s 420s IQR, mad, sd, var, xtabs 420s 420s The following objects are masked from ‘package:base’: 420s 420s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 420s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 420s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 420s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 420s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 420s table, tapply, union, unique, unsplit, which.max, which.min 420s 420s Loading required package: S4Vectors 420s Loading required package: stats4 421s 421s Attaching package: ‘S4Vectors’ 421s 421s The following object is masked from ‘package:utils’: 421s 421s findMatches 421s 421s The following objects are masked from ‘package:base’: 421s 421s expand.grid, I, unname 421s 421s Loading required package: IRanges 422s Loading required package: GenomeInfoDb 422s Loading required package: GenomicRanges 423s Loading required package: SummarizedExperiment 423s Loading required package: MatrixGenerics 423s Loading required package: matrixStats 423s 423s Attaching package: ‘MatrixGenerics’ 423s 423s The following objects are masked from ‘package:matrixStats’: 423s 423s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 423s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 423s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 423s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 423s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 423s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 423s colWeightedMeans, colWeightedMedians, colWeightedSds, 423s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 423s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 423s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 423s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 423s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 423s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 423s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 423s rowWeightedSds, rowWeightedVars 423s 423s Loading required package: Biobase 423s Welcome to Bioconductor 423s 423s Vignettes contain introductory material; view with 423s 'browseVignettes()'. To cite Bioconductor, see 423s 'citation("Biobase")', and for packages 'citation("pkgname")'. 423s 423s 423s Attaching package: ‘Biobase’ 423s 423s The following object is masked from ‘package:MatrixGenerics’: 423s 423s rowMedians 423s 423s The following objects are masked from ‘package:matrixStats’: 423s 423s anyMissing, rowMedians 423s 426s Loading required package: Biostrings 426s Loading required package: XVector 427s 427s Attaching package: ‘Biostrings’ 427s 427s The following object is masked from ‘package:base’: 427s 427s strsplit 427s 427s Loading required package: Rsamtools 428s Warning message: 428s package ‘Rsamtools’ was built under R version 4.3.3 428s > 428s > 428s Other tests are currently unsupported! 428s They will be progressively added. 428s autopkgtest [18:38:46]: test pkg-r-autopkgtest: -----------------------] 429s autopkgtest [18:38:47]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 429s pkg-r-autopkgtest PASS 429s autopkgtest [18:38:47]: @@@@@@@@@@@@@@@@@@@@ summary 429s pkg-r-autopkgtest PASS 440s Creating nova instance adt-noble-s390x-r-bioc-genomicalignments-20240316-183138-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...