0s autopkgtest [18:28:57]: starting date and time: 2024-03-16 18:28:57+0000 0s autopkgtest [18:28:57]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:28:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bzb82wur/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-edaseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-13.secgroup --name adt-noble-s390x-r-bioc-edaseq-20240316-182857-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 94s autopkgtest [18:30:31]: testbed dpkg architecture: s390x 94s autopkgtest [18:30:31]: testbed apt version: 2.7.12 94s autopkgtest [18:30:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 94s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 95s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 95s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 95s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 95s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 95s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB] 95s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 95s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 95s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 95s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3752 kB] 95s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 95s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB] 95s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 97s Fetched 8760 kB in 2s (3809 kB/s) 98s Reading package lists... 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s Calculating upgrade... 100s The following packages will be REMOVED: 100s libssl3 100s The following NEW packages will be installed: 100s libssl3t64 100s The following packages have been kept back: 100s curl 100s The following packages will be upgraded: 100s openssl ubuntu-minimal ubuntu-standard 101s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 101s Need to get 2680 kB of archives. 101s After this operation, 23.6 kB of additional disk space will be used. 101s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 101s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 101s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB] 101s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB] 101s Fetched 2680 kB in 1s (3973 kB/s) 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 102s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 102s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 102s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 102s wget depends on libssl3 (>= 3.0.0). 102s tnftp depends on libssl3 (>= 3.0.0). 102s tcpdump depends on libssl3 (>= 3.0.0). 102s systemd-resolved depends on libssl3 (>= 3.0.0). 102s systemd depends on libssl3 (>= 3.0.0). 102s sudo depends on libssl3 (>= 3.0.0). 102s s390-tools depends on libssl3 (>= 3.0.0). 102s rsync depends on libssl3 (>= 3.0.0). 102s python3-cryptography depends on libssl3 (>= 3.0.0). 102s openssh-server depends on libssl3 (>= 3.0.10). 102s openssh-client depends on libssl3 (>= 3.0.10). 102s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 102s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 102s libssh-4:s390x depends on libssl3 (>= 3.0.0). 102s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 102s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 102s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 102s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 102s libnvme1 depends on libssl3 (>= 3.0.0). 102s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 102s libkmod2:s390x depends on libssl3 (>= 3.0.0). 102s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 102s libcurl4:s390x depends on libssl3 (>= 3.0.0). 102s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 102s kmod depends on libssl3 (>= 3.0.0). 102s dhcpcd-base depends on libssl3 (>= 3.0.0). 102s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 102s 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 102s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 102s Selecting previously unselected package libssl3t64:s390x. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 102s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 102s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 102s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ... 102s Unpacking ubuntu-minimal (1.536) over (1.535) ... 102s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ... 102s Unpacking ubuntu-standard (1.536) over (1.535) ... 102s Setting up ubuntu-minimal (1.536) ... 102s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 102s Setting up ubuntu-standard (1.536) ... 102s Setting up openssl (3.0.13-0ubuntu1) ... 102s Processing triggers for man-db (2.12.0-3) ... 102s Processing triggers for libc-bin (2.39-0ubuntu2) ... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 103s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 103s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 104s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 105s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade... 105s The following packages have been kept back: 105s curl 105s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 108s autopkgtest [18:30:45]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 108s autopkgtest [18:30:45]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-edaseq 110s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (dsc) [2311 B] 110s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (tar) [119 kB] 110s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (diff) [5568 B] 110s gpgv: Signature made Fri Dec 1 09:50:17 2023 UTC 110s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 110s gpgv: issuer "tillea@rki.de" 110s gpgv: Can't check signature: No public key 110s dpkg-source: warning: cannot verify inline signature for ./r-bioc-edaseq_2.36.0+dfsg-1.dsc: no acceptable signature found 110s autopkgtest [18:30:47]: testing package r-bioc-edaseq version 2.36.0+dfsg-1 110s autopkgtest [18:30:47]: build not needed 111s autopkgtest [18:30:48]: test pkg-r-autopkgtest: preparing testbed 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s Starting pkgProblemResolver with broken count: 0 113s Starting 2 pkgProblemResolver with broken count: 0 113s Done 113s The following additional packages will be installed: 113s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl 113s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 113s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 113s g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 113s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 113s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 113s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 113s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 113s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 113s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 113s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl 113s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 113s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 113s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 113s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 113s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 113s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 113s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 113s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 113s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 113s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 113s libpng-dev libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 113s libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 113s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 113s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 113s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 113s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 113s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 113s r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase r-bioc-biocfilecache 113s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 113s r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 113s r-bioc-edaseq r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 113s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 113s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 113s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 113s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 113s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 113s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 113s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 113s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 113s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 113s r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-diffobj 113s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 113s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 113s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 113s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 113s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-hwriter 113s r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 113s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 113s r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler 113s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 113s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 113s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 113s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 113s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 113s r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 113s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 113s r-cran-rcppeigen r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 113s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass 113s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod 113s r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble 113s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 113s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 113s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 113s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 113s x11-common xdg-utils zip zlib1g-dev 113s Suggested packages: 113s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 113s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 113s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 113s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 113s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 113s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 113s libboost-context1.83-dev libboost-contract1.83-dev 113s libboost-coroutine1.83-dev libboost-date-time1.83-dev 113s libboost-exception1.83-dev libboost-fiber1.83-dev 113s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 113s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 113s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 113s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 113s libboost-numpy1.83-dev libboost-program-options1.83-dev 113s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 113s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 113s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 113s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 113s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 113s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 113s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 113s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 113s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 113s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 113s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 113s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 113s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-cran-princurve 113s r-bioc-all r-bioc-affy r-bioc-annotate r-cran-foreach r-cran-bbmisc 113s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 113s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 113s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 113s r-cran-pheatmap r-bioc-tximport r-bioc-tximeta r-bioc-tximportdata 113s r-cran-readr r-cran-pbapply r-bioc-glmgampoi r-bioc-rhdf5 113s r-cran-seuratobject r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown 113s r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-cran-biasedurn 113s r-cran-ellipse r-cran-gplots r-bioc-sparsematrixstats r-cran-roxygen2 113s r-cran-ff r-cran-covr r-cran-spelling r-cran-kernlab r-cran-mvtnorm 113s r-cran-vcd r-cran-shinyjs r-cran-viridis r-cran-rstudioapi r-cran-rmysql 113s r-cran-polyclip r-cran-lubridate r-cran-sp r-cran-gridextra 113s r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-getopt r-cran-gam 113s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival 113s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 113s r-cran-bench r-cran-here r-cran-plm r-cran-zoo debhelper ghostscript gv 113s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 113s texlive-latex-base-doc wp2latex 113s Recommended packages: 113s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 113s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 113s r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect 113s r-cran-testit r-cran-tufte r-cran-webshot r-cran-covr r-cran-thematic 113s r-cran-cliapp r-cran-mockery r-cran-whoami r-cran-bench r-cran-decor 113s r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-rpostgresql r-cran-gh 113s r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-survival 113s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 113s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 113s r-cran-svglite r-cran-vdiffr r-cran-cairo r-cran-markdown r-cran-readr 113s r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 113s r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 113s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr 113s r-cran-webfakes r-cran-future r-cran-pingr r-cran-runit r-cran-usethis 113s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-rvest r-cran-dichromat 113s r-cran-data.table r-cran-formattable r-cran-pkgdown r-cran-zeallot 113s r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl 113s libx11-protocol-perl x11-utils x11-xserver-utils 113s The following packages will be REMOVED: 113s libcurl4 libpsl5 113s The following NEW packages will be installed: 113s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 113s cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config 113s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 113s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 113s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 113s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 113s gfortran-s390x-linux-gnu icu-devtools javascript-common libasan8 libatomic1 113s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 113s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 113s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev 113s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 113s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 113s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 113s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 113s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 113s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 113s libjs-popper.js libjs-prettify libjs-sifter.js 113s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 113s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 113s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 113s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 113s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 113s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 113s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 113s libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 113s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 113s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 113s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 113s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-aroma.light 113s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 113s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings 113s r-bioc-delayedarray r-bioc-deseq2 r-bioc-edaseq r-bioc-edger 113s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 113s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 113s r-bioc-limma r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 113s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread 113s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 113s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 113s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 113s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 113s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 113s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc 113s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 113s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 113s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 113s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 113s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-hwriter 113s r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 113s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 113s r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler 113s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 113s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 113s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 113s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 113s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 113s r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 113s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 113s r-cran-rcppeigen r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 113s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass 113s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod 113s r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble 113s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 113s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 113s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 113s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 113s x11-common xdg-utils zip zlib1g-dev 113s The following packages will be upgraded: 113s curl 113s 1 upgraded, 319 newly installed, 2 to remove and 0 not upgraded. 113s Need to get 468 MB/468 MB of archives. 113s After this operation, 1460 MB of additional disk space will be used. 113s Get:1 /tmp/autopkgtest.HKokfo/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [780 B] 114s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB] 114s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB] 114s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB] 114s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 114s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 114s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 114s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 114s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 114s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 114s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 114s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 114s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 114s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 115s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 115s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 115s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 115s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 115s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 115s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 115s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 115s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 115s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 115s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 115s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 115s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 115s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 115s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 115s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 115s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 116s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 116s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 116s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 116s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 116s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 116s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 116s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 116s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 116s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 116s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 116s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 116s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 116s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 116s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 116s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 116s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 116s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 116s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 116s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 116s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 116s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 116s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 116s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 116s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 116s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 116s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 116s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 116s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 116s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 117s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 117s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 117s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 117s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 117s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 117s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 117s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 117s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 117s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 117s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 117s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 117s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 117s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 117s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 117s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 117s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 117s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 117s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 117s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 117s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 117s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 117s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 117s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 117s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 117s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 117s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 117s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 117s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 117s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 117s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 117s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 117s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 117s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 117s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 117s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9 [66.4 kB] 117s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 117s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 117s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 117s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 117s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 117s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 117s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 117s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 118s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 118s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 118s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 118s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 118s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 118s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 118s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 118s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 118s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 118s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 118s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 118s Get:114 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9 [41.6 kB] 118s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 118s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 118s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 118s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9 [65.0 kB] 118s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 118s Get:120 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 118s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9 [132 kB] 118s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 118s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 118s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 118s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 118s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 118s Get:127 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 118s Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 118s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3 [49.3 kB] 118s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 118s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1 [186 kB] 118s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 118s Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13 s390x 0.13.72+dfsg.1-1.1 [26.1 kB] 118s Get:134 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 118s Get:135 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 118s Get:136 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 118s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 119s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 119s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x littler all 0.3.19-1 [2472 B] 120s Get:140 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 120s Get:141 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 120s Get:142 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 120s Get:143 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 120s Get:144 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 121s Get:145 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 121s Get:146 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 121s Get:147 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 121s Get:148 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 121s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 121s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 121s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 121s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 121s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 121s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 121s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 121s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 121s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 121s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 121s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 122s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 122s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 122s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 122s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 122s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 122s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 122s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 122s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 122s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 122s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 122s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 122s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB] 122s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 122s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 122s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 122s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 122s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB] 122s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 122s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 122s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB] 122s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 122s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 122s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 122s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1 [794 kB] 122s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 122s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 123s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 123s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 123s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 123s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 123s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 123s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r.oo all 1.26.0-1 [955 kB] 123s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r.utils all 2.12.3-1 [1386 kB] 124s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 124s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-aroma.light all 3.32.0-1 [576 kB] 124s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 124s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 124s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 124s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 124s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 124s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 124s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 124s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 124s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 124s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 124s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 124s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 124s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 124s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 124s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 124s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 124s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 124s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 124s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 124s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 125s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 125s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 125s Get:217 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 125s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 125s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 125s Get:220 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 125s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 125s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 125s Get:223 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 125s Get:224 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 125s Get:225 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 125s Get:226 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 125s Get:227 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 125s Get:228 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 125s Get:229 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 125s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 125s Get:231 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 125s Get:232 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 125s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 125s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 125s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 125s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 125s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 125s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 125s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 125s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 125s Get:241 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 125s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1 [519 kB] 125s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 125s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 125s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 125s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 125s Get:247 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 126s Get:248 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 126s Get:249 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 126s Get:250 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 126s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 126s Get:252 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 126s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9 [9353 kB] 126s Get:254 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 127s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 127s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 130s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 130s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 130s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 130s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 130s Get:261 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 130s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 130s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 131s Get:264 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 131s Get:265 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 131s Get:266 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 131s Get:267 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 131s Get:268 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 131s Get:269 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 131s Get:270 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 131s Get:271 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 131s Get:272 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 131s Get:273 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-locfit s390x 1.5-9.8-1 [511 kB] 131s Get:274 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 131s Get:275 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB] 131s Get:276 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 131s Get:277 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-nlme s390x 3.1.164-1 [2268 kB] 131s Get:278 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 131s Get:279 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-farver s390x 2.1.1-1 [1347 kB] 131s Get:280 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB] 131s Get:281 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-colorspace s390x 2.1-0+dfsg-1 [1540 kB] 132s Get:282 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-munsell all 0.5.0-2build1 [208 kB] 132s Get:283 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 132s Get:284 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB] 132s Get:285 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-scales all 1.3.0-1 [603 kB] 132s Get:286 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 132s Get:287 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpparmadillo s390x 0.12.8.0.0-1 [869 kB] 132s Get:288 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-deseq2 s390x 1.42.0+dfsg-1 [1235 kB] 132s Get:289 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-1 [1410 kB] 132s Get:290 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1build1 [3700 kB] 132s Get:291 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 132s Get:292 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hwriter all 1.3.2.1-1 [106 kB] 132s Get:293 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jpeg s390x 0.1-10-1 [31.3 kB] 132s Get:294 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-deldir s390x 2.0-4-1 [271 kB] 132s Get:295 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcppeigen s390x 0.3.3.9.4-1 [1187 kB] 132s Get:296 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-interp s390x 1.1-6-1 [1465 kB] 132s Get:297 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-latticeextra all 0.6-30-1 [2198 kB] 132s Get:298 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-shortread s390x 1.60.0-2 [5204 kB] 133s Get:299 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 133s Get:300 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 133s Get:301 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 133s Get:302 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 133s Get:303 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-edaseq all 2.36.0+dfsg-1 [384 kB] 133s Get:304 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB] 133s Get:305 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-limma s390x 3.58.1+dfsg-1 [1900 kB] 134s Get:306 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-edger s390x 4.0.16+dfsg-1 [1157 kB] 134s Get:307 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-brio s390x 1.1.4-1 [37.8 kB] 134s Get:308 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ps s390x 1.7.6-1 [313 kB] 134s Get:309 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-processx s390x 3.8.3-1 [364 kB] 134s Get:310 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-callr all 3.7.3-2 [425 kB] 134s Get:311 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-desc all 1.4.3-1 [359 kB] 134s Get:312 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB] 134s Get:313 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-kernsmooth s390x 2.23-22-1 [93.0 kB] 134s Get:314 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgbuild all 1.4.3-1 [209 kB] 134s Get:315 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rprojroot all 2.0.4-1 [124 kB] 134s Get:316 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgload all 1.3.4-1 [207 kB] 134s Get:317 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB] 134s Get:318 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 134s Get:319 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-waldo all 0.5.2-1build1 [120 kB] 134s Get:320 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-testthat s390x 3.2.1-1 [1688 kB] 135s Preconfiguring packages ... 135s Fetched 468 MB in 20s (22.8 MB/s) 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 135s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ... 135s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 135s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested: 135s wget depends on libpsl5 (>= 0.16.0). 135s libcurl4:s390x depends on libpsl5 (>= 0.16.0). 135s libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0). 135s 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 135s Removing libpsl5:s390x (0.21.2-1build1) ... 135s Selecting previously unselected package libpsl5t64:s390x. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52168 files and directories currently installed.) 135s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ... 135s Unpacking libpsl5t64:s390x (0.21.2-1.1) ... 135s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested: 135s s390-tools depends on libcurl4 (>= 7.16.2). 135s 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52174 files and directories currently installed.) 135s Removing libcurl4:s390x (8.5.0-2ubuntu2) ... 135s Selecting previously unselected package libcurl4t64:s390x. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52169 files and directories currently installed.) 135s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ... 135s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ... 135s Selecting previously unselected package libc-dev-bin. 135s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 135s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 135s Selecting previously unselected package linux-libc-dev:s390x. 135s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ... 135s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 135s Selecting previously unselected package libcrypt-dev:s390x. 135s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 135s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 135s Selecting previously unselected package libtirpc-dev:s390x. 135s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 135s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 135s Selecting previously unselected package libnsl-dev:s390x. 135s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ... 135s Unpacking libnsl-dev:s390x (1.3.0-3) ... 135s Selecting previously unselected package rpcsvc-proto. 135s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 135s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 135s Selecting previously unselected package libc6-dev:s390x. 135s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ... 135s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 135s Selecting previously unselected package libisl23:s390x. 136s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ... 136s Unpacking libisl23:s390x (0.26-3) ... 136s Selecting previously unselected package libmpc3:s390x. 136s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ... 136s Unpacking libmpc3:s390x (1.3.1-1) ... 136s Selecting previously unselected package cpp-13-s390x-linux-gnu. 136s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 136s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 136s Selecting previously unselected package cpp-13. 136s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 136s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 136s Selecting previously unselected package cpp-s390x-linux-gnu. 136s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 136s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 136s Selecting previously unselected package cpp. 136s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 136s Unpacking cpp (4:13.2.0-7ubuntu1) ... 136s Selecting previously unselected package libcc1-0:s390x. 136s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 136s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 136s Selecting previously unselected package libgomp1:s390x. 136s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 136s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 136s Selecting previously unselected package libitm1:s390x. 136s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ... 136s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 136s Selecting previously unselected package libatomic1:s390x. 136s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 136s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 136s Selecting previously unselected package libasan8:s390x. 136s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ... 136s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 136s Selecting previously unselected package libubsan1:s390x. 136s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 136s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 136s Selecting previously unselected package libgcc-13-dev:s390x. 136s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 136s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 136s Selecting previously unselected package gcc-13-s390x-linux-gnu. 136s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 136s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 136s Selecting previously unselected package gcc-13. 136s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 136s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 137s Selecting previously unselected package gcc-s390x-linux-gnu. 137s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 137s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 137s Selecting previously unselected package gcc. 137s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 137s Unpacking gcc (4:13.2.0-7ubuntu1) ... 137s Selecting previously unselected package libstdc++-13-dev:s390x. 137s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 137s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 137s Selecting previously unselected package g++-13-s390x-linux-gnu. 137s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 137s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 137s Selecting previously unselected package g++-13. 137s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ... 137s Unpacking g++-13 (13.2.0-17ubuntu2) ... 137s Selecting previously unselected package g++-s390x-linux-gnu. 137s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 137s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 137s Selecting previously unselected package g++. 137s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 137s Unpacking g++ (4:13.2.0-7ubuntu1) ... 137s Selecting previously unselected package build-essential. 137s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ... 137s Unpacking build-essential (12.10ubuntu1) ... 137s Selecting previously unselected package dctrl-tools. 137s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ... 137s Unpacking dctrl-tools (2.24-3build2) ... 137s Selecting previously unselected package libfreetype6:s390x. 137s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 137s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 137s Selecting previously unselected package fonts-dejavu-mono. 137s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 137s Unpacking fonts-dejavu-mono (2.37-8) ... 137s Selecting previously unselected package fonts-dejavu-core. 137s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 137s Unpacking fonts-dejavu-core (2.37-8) ... 137s Selecting previously unselected package fontconfig-config. 137s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 137s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 137s Selecting previously unselected package libfontconfig1:s390x. 137s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 137s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 137s Selecting previously unselected package fontconfig. 137s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 137s Unpacking fontconfig (2.15.0-1ubuntu1) ... 137s Selecting previously unselected package fonts-font-awesome. 137s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 137s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 137s Selecting previously unselected package fonts-glyphicons-halflings. 137s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 137s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 137s Selecting previously unselected package fonts-lmodern. 137s Preparing to unpack .../040-fonts-lmodern_2.005-1_all.deb ... 137s Unpacking fonts-lmodern (2.005-1) ... 137s Selecting previously unselected package fonts-mathjax. 137s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 137s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 138s Selecting previously unselected package libgfortran5:s390x. 138s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 138s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libgfortran-13-dev:s390x. 138s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 138s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 138s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 138s Preparing to unpack .../044-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 138s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 138s Selecting previously unselected package gfortran-13. 138s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 138s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 138s Selecting previously unselected package gfortran-s390x-linux-gnu. 138s Preparing to unpack .../046-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 138s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 138s Selecting previously unselected package gfortran. 138s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 138s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 138s Selecting previously unselected package icu-devtools. 138s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_s390x.deb ... 138s Unpacking icu-devtools (74.2-1ubuntu1) ... 138s Selecting previously unselected package javascript-common. 138s Preparing to unpack .../049-javascript-common_11+nmu1_all.deb ... 138s Unpacking javascript-common (11+nmu1) ... 138s Selecting previously unselected package libio-string-perl. 138s Preparing to unpack .../050-libio-string-perl_1.08-4_all.deb ... 138s Unpacking libio-string-perl (1.08-4) ... 138s Selecting previously unselected package liblatex-tounicode-perl. 138s Preparing to unpack .../051-liblatex-tounicode-perl_0.54-2_all.deb ... 138s Unpacking liblatex-tounicode-perl (0.54-2) ... 138s Selecting previously unselected package libbibtex-parser-perl. 138s Preparing to unpack .../052-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 138s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 138s Selecting previously unselected package libblas3:s390x. 138s Preparing to unpack .../053-libblas3_3.12.0-3_s390x.deb ... 138s Unpacking libblas3:s390x (3.12.0-3) ... 138s Selecting previously unselected package libblas-dev:s390x. 138s Preparing to unpack .../054-libblas-dev_3.12.0-3_s390x.deb ... 138s Unpacking libblas-dev:s390x (3.12.0-3) ... 138s Selecting previously unselected package libboost1.83-dev:s390x. 138s Preparing to unpack .../055-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 138s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 140s Selecting previously unselected package libboost-dev:s390x. 140s Preparing to unpack .../056-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 140s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 140s Selecting previously unselected package libbz2-dev:s390x. 140s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 140s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 140s Selecting previously unselected package libpixman-1-0:s390x. 140s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_s390x.deb ... 140s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 140s Selecting previously unselected package libxcb-render0:s390x. 140s Preparing to unpack .../059-libxcb-render0_1.15-1_s390x.deb ... 140s Unpacking libxcb-render0:s390x (1.15-1) ... 140s Selecting previously unselected package libxcb-shm0:s390x. 140s Preparing to unpack .../060-libxcb-shm0_1.15-1_s390x.deb ... 140s Unpacking libxcb-shm0:s390x (1.15-1) ... 140s Selecting previously unselected package libxrender1:s390x. 140s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 140s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 140s Selecting previously unselected package libcairo2:s390x. 140s Preparing to unpack .../062-libcairo2_1.18.0-1_s390x.deb ... 140s Unpacking libcairo2:s390x (1.18.0-1) ... 140s Selecting previously unselected package libdatrie1:s390x. 140s Preparing to unpack .../063-libdatrie1_0.2.13-3_s390x.deb ... 140s Unpacking libdatrie1:s390x (0.2.13-3) ... 140s Selecting previously unselected package libdeflate0:s390x. 140s Preparing to unpack .../064-libdeflate0_1.19-1_s390x.deb ... 140s Unpacking libdeflate0:s390x (1.19-1) ... 140s Selecting previously unselected package libgraphite2-3:s390x. 140s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_s390x.deb ... 140s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 140s Selecting previously unselected package libharfbuzz0b:s390x. 141s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_s390x.deb ... 141s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 141s Selecting previously unselected package x11-common. 141s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 141s Unpacking x11-common (1:7.7+23ubuntu2) ... 141s Selecting previously unselected package libice6:s390x. 141s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_s390x.deb ... 141s Unpacking libice6:s390x (2:1.0.10-1build2) ... 141s Selecting previously unselected package libicu-dev:s390x. 141s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_s390x.deb ... 141s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 141s Selecting previously unselected package libjpeg-turbo8:s390x. 141s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 141s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 141s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 141s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 141s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 141s Selecting previously unselected package libjpeg8:s390x. 141s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_s390x.deb ... 141s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 141s Selecting previously unselected package libjpeg8-dev:s390x. 141s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 141s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 141s Selecting previously unselected package libjpeg-dev:s390x. 141s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 141s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 141s Selecting previously unselected package libjs-bootstrap. 141s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 141s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 141s Selecting previously unselected package libjs-popper.js. 141s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6_all.deb ... 141s Unpacking libjs-popper.js (1.16.1+ds-6) ... 141s Selecting previously unselected package libjs-bootstrap4. 141s Preparing to unpack .../077-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 141s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 141s Selecting previously unselected package libjs-d3. 141s Preparing to unpack .../078-libjs-d3_3.5.17-4_all.deb ... 141s Unpacking libjs-d3 (3.5.17-4) ... 141s Selecting previously unselected package libjs-es5-shim. 141s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ... 141s Unpacking libjs-es5-shim (4.6.7-2) ... 141s Selecting previously unselected package libjs-highlight.js. 141s Preparing to unpack .../080-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 141s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 141s Selecting previously unselected package libjs-jquery. 141s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 141s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 141s Selecting previously unselected package libjs-jquery-datatables. 141s Preparing to unpack .../082-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 141s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 141s Selecting previously unselected package libjs-sifter.js. 141s Preparing to unpack .../083-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 141s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 141s Selecting previously unselected package libjs-microplugin.js. 141s Preparing to unpack .../084-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 141s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 141s Selecting previously unselected package libjs-jquery-selectize.js. 141s Preparing to unpack .../085-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 141s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 141s Selecting previously unselected package libjs-jquery-ui. 141s Preparing to unpack .../086-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 141s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 141s Selecting previously unselected package libjs-json. 141s Preparing to unpack .../087-libjs-json_0~20221030+~1.0.8-1_all.deb ... 141s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 142s Selecting previously unselected package libjs-lunr. 142s Preparing to unpack .../088-libjs-lunr_2.3.9~dfsg-2_all.deb ... 142s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 142s Selecting previously unselected package libjs-prettify. 142s Preparing to unpack .../089-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 142s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 142s Selecting previously unselected package libkpathsea6:s390x. 142s Preparing to unpack .../090-libkpathsea6_2023.20230311.66589-9_s390x.deb ... 142s Unpacking libkpathsea6:s390x (2023.20230311.66589-9) ... 142s Selecting previously unselected package liblapack3:s390x. 142s Preparing to unpack .../091-liblapack3_3.12.0-3_s390x.deb ... 142s Unpacking liblapack3:s390x (3.12.0-3) ... 142s Selecting previously unselected package liblapack-dev:s390x. 142s Preparing to unpack .../092-liblapack-dev_3.12.0-3_s390x.deb ... 142s Unpacking liblapack-dev:s390x (3.12.0-3) ... 142s Selecting previously unselected package liblua5.4-0:s390x. 142s Preparing to unpack .../093-liblua5.4-0_5.4.6-3_s390x.deb ... 142s Unpacking liblua5.4-0:s390x (5.4.6-3) ... 142s Selecting previously unselected package libncurses-dev:s390x. 142s Preparing to unpack .../094-libncurses-dev_6.4+20240113-1ubuntu1_s390x.deb ... 142s Unpacking libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 142s Selecting previously unselected package libthai-data. 142s Preparing to unpack .../095-libthai-data_0.1.29-2_all.deb ... 142s Unpacking libthai-data (0.1.29-2) ... 142s Selecting previously unselected package libthai0:s390x. 142s Preparing to unpack .../096-libthai0_0.1.29-2_s390x.deb ... 142s Unpacking libthai0:s390x (0.1.29-2) ... 142s Selecting previously unselected package libpango-1.0-0:s390x. 142s Preparing to unpack .../097-libpango-1.0-0_1.51.0+ds-4_s390x.deb ... 142s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ... 142s Selecting previously unselected package libpangoft2-1.0-0:s390x. 142s Preparing to unpack .../098-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ... 142s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 142s Selecting previously unselected package libpangocairo-1.0-0:s390x. 142s Preparing to unpack .../099-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 142s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 142s Selecting previously unselected package libpaper1:s390x. 142s Preparing to unpack .../100-libpaper1_1.1.29_s390x.deb ... 142s Unpacking libpaper1:s390x (1.1.29) ... 142s Selecting previously unselected package libpaper-utils. 142s Preparing to unpack .../101-libpaper-utils_1.1.29_s390x.deb ... 142s Unpacking libpaper-utils (1.1.29) ... 142s Selecting previously unselected package libpcre2-16-0:s390x. 142s Preparing to unpack .../102-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ... 142s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ... 142s Selecting previously unselected package libpcre2-32-0:s390x. 142s Preparing to unpack .../103-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ... 142s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ... 142s Selecting previously unselected package libpcre2-posix3:s390x. 142s Preparing to unpack .../104-libpcre2-posix3_10.42-4ubuntu1_s390x.deb ... 142s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ... 142s Selecting previously unselected package libpcre2-dev:s390x. 142s Preparing to unpack .../105-libpcre2-dev_10.42-4ubuntu1_s390x.deb ... 142s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ... 142s Selecting previously unselected package libpkgconf3:s390x. 142s Preparing to unpack .../106-libpkgconf3_1.8.1-2_s390x.deb ... 142s Unpacking libpkgconf3:s390x (1.8.1-2) ... 142s Selecting previously unselected package zlib1g-dev:s390x. 142s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 142s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 142s Selecting previously unselected package libpng-dev:s390x. 142s Preparing to unpack .../108-libpng-dev_1.6.43-1_s390x.deb ... 142s Unpacking libpng-dev:s390x (1.6.43-1) ... 142s Selecting previously unselected package libpotrace0:s390x. 142s Preparing to unpack .../109-libpotrace0_1.16-2_s390x.deb ... 142s Unpacking libpotrace0:s390x (1.16-2) ... 142s Selecting previously unselected package libptexenc1:s390x. 142s Preparing to unpack .../110-libptexenc1_2023.20230311.66589-9_s390x.deb ... 142s Unpacking libptexenc1:s390x (2023.20230311.66589-9) ... 142s Selecting previously unselected package libreadline-dev:s390x. 142s Preparing to unpack .../111-libreadline-dev_8.2-3_s390x.deb ... 142s Unpacking libreadline-dev:s390x (8.2-3) ... 142s Selecting previously unselected package libsharpyuv0:s390x. 142s Preparing to unpack .../112-libsharpyuv0_1.3.2-0.4_s390x.deb ... 142s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 142s Selecting previously unselected package libsm6:s390x. 142s Preparing to unpack .../113-libsm6_2%3a1.2.3-1build2_s390x.deb ... 142s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 142s Selecting previously unselected package libsynctex2:s390x. 142s Preparing to unpack .../114-libsynctex2_2023.20230311.66589-9_s390x.deb ... 142s Unpacking libsynctex2:s390x (2023.20230311.66589-9) ... 142s Selecting previously unselected package libtcl8.6:s390x. 142s Preparing to unpack .../115-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 142s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 142s Selecting previously unselected package libteckit0:s390x. 142s Preparing to unpack .../116-libteckit0_2.5.12+ds1-1_s390x.deb ... 142s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 142s Selecting previously unselected package libtexlua53-5:s390x. 142s Preparing to unpack .../117-libtexlua53-5_2023.20230311.66589-9_s390x.deb ... 142s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9) ... 142s Selecting previously unselected package libjbig0:s390x. 142s Preparing to unpack .../118-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 142s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 142s Selecting previously unselected package libwebp7:s390x. 142s Preparing to unpack .../119-libwebp7_1.3.2-0.4_s390x.deb ... 142s Unpacking libwebp7:s390x (1.3.2-0.4) ... 142s Selecting previously unselected package libtiff6:s390x. 142s Preparing to unpack .../120-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 142s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 142s Selecting previously unselected package libxft2:s390x. 142s Preparing to unpack .../121-libxft2_2.3.6-1_s390x.deb ... 142s Unpacking libxft2:s390x (2.3.6-1) ... 142s Selecting previously unselected package libxss1:s390x. 142s Preparing to unpack .../122-libxss1_1%3a1.2.3-1build2_s390x.deb ... 142s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 142s Selecting previously unselected package libtk8.6:s390x. 142s Preparing to unpack .../123-libtk8.6_8.6.13-2_s390x.deb ... 142s Unpacking libtk8.6:s390x (8.6.13-2) ... 143s Selecting previously unselected package libxt6:s390x. 143s Preparing to unpack .../124-libxt6_1%3a1.2.1-1.1_s390x.deb ... 143s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 143s Selecting previously unselected package libxmu6:s390x. 143s Preparing to unpack .../125-libxmu6_2%3a1.1.3-3_s390x.deb ... 143s Unpacking libxmu6:s390x (2:1.1.3-3) ... 143s Selecting previously unselected package libxpm4:s390x. 143s Preparing to unpack .../126-libxpm4_1%3a3.5.17-1_s390x.deb ... 143s Unpacking libxpm4:s390x (1:3.5.17-1) ... 143s Selecting previously unselected package libxaw7:s390x. 143s Preparing to unpack .../127-libxaw7_2%3a1.0.14-1_s390x.deb ... 143s Unpacking libxaw7:s390x (2:1.0.14-1) ... 143s Selecting previously unselected package libxi6:s390x. 143s Preparing to unpack .../128-libxi6_2%3a1.8.1-1_s390x.deb ... 143s Unpacking libxi6:s390x (2:1.8.1-1) ... 143s Selecting previously unselected package libzzip-0-13:s390x. 143s Preparing to unpack .../129-libzzip-0-13_0.13.72+dfsg.1-1.1_s390x.deb ... 143s Unpacking libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 143s Selecting previously unselected package zip. 143s Preparing to unpack .../130-zip_3.0-13_s390x.deb ... 143s Unpacking zip (3.0-13) ... 143s Selecting previously unselected package unzip. 143s Preparing to unpack .../131-unzip_6.0-28ubuntu3_s390x.deb ... 143s Unpacking unzip (6.0-28ubuntu3) ... 143s Selecting previously unselected package xdg-utils. 143s Preparing to unpack .../132-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 143s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 143s Selecting previously unselected package r-base-core. 143s Preparing to unpack .../133-r-base-core_4.3.2-1build1_s390x.deb ... 143s Unpacking r-base-core (4.3.2-1build1) ... 143s Selecting previously unselected package r-cran-littler. 143s Preparing to unpack .../134-r-cran-littler_0.3.19-1_s390x.deb ... 143s Unpacking r-cran-littler (0.3.19-1) ... 143s Selecting previously unselected package littler. 143s Preparing to unpack .../135-littler_0.3.19-1_all.deb ... 143s Unpacking littler (0.3.19-1) ... 143s Selecting previously unselected package node-bootstrap-sass. 143s Preparing to unpack .../136-node-bootstrap-sass_3.4.3-2_all.deb ... 143s Unpacking node-bootstrap-sass (3.4.3-2) ... 143s Selecting previously unselected package node-html5shiv. 143s Preparing to unpack .../137-node-html5shiv_3.7.3+dfsg-5_all.deb ... 143s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 143s Selecting previously unselected package node-normalize.css. 143s Preparing to unpack .../138-node-normalize.css_8.0.1-5_all.deb ... 143s Unpacking node-normalize.css (8.0.1-5) ... 143s Selecting previously unselected package pandoc-data. 143s Preparing to unpack .../139-pandoc-data_3.1.3-1_all.deb ... 143s Unpacking pandoc-data (3.1.3-1) ... 143s Selecting previously unselected package pandoc. 143s Preparing to unpack .../140-pandoc_3.1.3+ds-2_s390x.deb ... 143s Unpacking pandoc (3.1.3+ds-2) ... 145s Selecting previously unselected package pkgconf-bin. 145s Preparing to unpack .../141-pkgconf-bin_1.8.1-2_s390x.deb ... 145s Unpacking pkgconf-bin (1.8.1-2) ... 145s Selecting previously unselected package pkgconf:s390x. 145s Preparing to unpack .../142-pkgconf_1.8.1-2_s390x.deb ... 145s Unpacking pkgconf:s390x (1.8.1-2) ... 145s Selecting previously unselected package pkg-config:s390x. 145s Preparing to unpack .../143-pkg-config_1.8.1-2_s390x.deb ... 145s Unpacking pkg-config:s390x (1.8.1-2) ... 145s Selecting previously unselected package liblzma-dev:s390x. 145s Preparing to unpack .../144-liblzma-dev_5.4.5-0.3_s390x.deb ... 145s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 145s Selecting previously unselected package r-base-dev. 145s Preparing to unpack .../145-r-base-dev_4.3.2-1build1_all.deb ... 145s Unpacking r-base-dev (4.3.2-1build1) ... 145s Selecting previously unselected package pkg-r-autopkgtest. 145s Preparing to unpack .../146-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 145s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 145s Selecting previously unselected package r-bioc-biocgenerics. 145s Preparing to unpack .../147-r-bioc-biocgenerics_0.48.1-2_all.deb ... 145s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 145s Selecting previously unselected package r-bioc-biobase. 145s Preparing to unpack .../148-r-bioc-biobase_2.62.0-1_s390x.deb ... 145s Unpacking r-bioc-biobase (2.62.0-1) ... 145s Selecting previously unselected package r-bioc-s4vectors. 145s Preparing to unpack .../149-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 145s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 145s Selecting previously unselected package r-bioc-iranges. 145s Preparing to unpack .../150-r-bioc-iranges_2.36.0-1_s390x.deb ... 145s Unpacking r-bioc-iranges (2.36.0-1) ... 145s Selecting previously unselected package r-cran-dbi. 145s Preparing to unpack .../151-r-cran-dbi_1.2.2-1_all.deb ... 145s Unpacking r-cran-dbi (1.2.2-1) ... 145s Selecting previously unselected package r-cran-bit. 145s Preparing to unpack .../152-r-cran-bit_4.0.5-1_s390x.deb ... 145s Unpacking r-cran-bit (4.0.5-1) ... 145s Selecting previously unselected package r-cran-bit64. 145s Preparing to unpack .../153-r-cran-bit64_4.0.5-1_s390x.deb ... 145s Unpacking r-cran-bit64 (4.0.5-1) ... 145s Selecting previously unselected package r-cran-rlang. 145s Preparing to unpack .../154-r-cran-rlang_1.1.3-1_s390x.deb ... 145s Unpacking r-cran-rlang (1.1.3-1) ... 146s Selecting previously unselected package r-cran-cli. 146s Preparing to unpack .../155-r-cran-cli_3.6.2-1_s390x.deb ... 146s Unpacking r-cran-cli (3.6.2-1) ... 146s Selecting previously unselected package r-cran-glue. 146s Preparing to unpack .../156-r-cran-glue_1.7.0-1_s390x.deb ... 146s Unpacking r-cran-glue (1.7.0-1) ... 146s Selecting previously unselected package r-cran-lifecycle. 146s Preparing to unpack .../157-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 146s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 146s Selecting previously unselected package r-cran-vctrs. 146s Preparing to unpack .../158-r-cran-vctrs_0.6.5-1_s390x.deb ... 146s Unpacking r-cran-vctrs (0.6.5-1) ... 146s Selecting previously unselected package r-cran-blob. 146s Preparing to unpack .../159-r-cran-blob_1.2.4-1_all.deb ... 146s Unpacking r-cran-blob (1.2.4-1) ... 146s Selecting previously unselected package r-cran-fastmap. 146s Preparing to unpack .../160-r-cran-fastmap_1.1.1-1_s390x.deb ... 146s Unpacking r-cran-fastmap (1.1.1-1) ... 146s Selecting previously unselected package r-cran-cachem. 146s Preparing to unpack .../161-r-cran-cachem_1.0.8-1_s390x.deb ... 146s Unpacking r-cran-cachem (1.0.8-1) ... 146s Selecting previously unselected package r-cran-memoise. 146s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ... 146s Unpacking r-cran-memoise (2.0.1-1) ... 146s Selecting previously unselected package r-cran-pkgconfig. 146s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 146s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 146s Selecting previously unselected package r-cran-plogr. 146s Preparing to unpack .../164-r-cran-plogr_0.2.0-3build1_all.deb ... 146s Unpacking r-cran-plogr (0.2.0-3build1) ... 146s Selecting previously unselected package r-cran-cpp11. 146s Preparing to unpack .../165-r-cran-cpp11_0.4.7-1_all.deb ... 146s Unpacking r-cran-cpp11 (0.4.7-1) ... 146s Selecting previously unselected package r-cran-rsqlite. 146s Preparing to unpack .../166-r-cran-rsqlite_2.3.4-1_s390x.deb ... 146s Unpacking r-cran-rsqlite (2.3.4-1) ... 146s Selecting previously unselected package r-cran-curl. 146s Preparing to unpack .../167-r-cran-curl_5.2.0+dfsg-1_s390x.deb ... 146s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 146s Selecting previously unselected package r-cran-jsonlite. 146s Preparing to unpack .../168-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 146s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 146s Selecting previously unselected package r-cran-mime. 146s Preparing to unpack .../169-r-cran-mime_0.12-1_s390x.deb ... 146s Unpacking r-cran-mime (0.12-1) ... 146s Selecting previously unselected package r-cran-sys. 146s Preparing to unpack .../170-r-cran-sys_3.4.2-1_s390x.deb ... 146s Unpacking r-cran-sys (3.4.2-1) ... 146s Selecting previously unselected package r-cran-askpass. 146s Preparing to unpack .../171-r-cran-askpass_1.2.0-1_s390x.deb ... 146s Unpacking r-cran-askpass (1.2.0-1) ... 146s Selecting previously unselected package r-cran-openssl. 146s Preparing to unpack .../172-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ... 146s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 146s Selecting previously unselected package r-cran-r6. 146s Preparing to unpack .../173-r-cran-r6_2.5.1-1_all.deb ... 146s Unpacking r-cran-r6 (2.5.1-1) ... 146s Selecting previously unselected package r-cran-httr. 146s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ... 146s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 146s Selecting previously unselected package r-cran-png. 146s Preparing to unpack .../175-r-cran-png_0.1-8-1_s390x.deb ... 146s Unpacking r-cran-png (0.1-8-1) ... 146s Selecting previously unselected package r-bioc-zlibbioc. 146s Preparing to unpack .../176-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 146s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 146s Selecting previously unselected package r-bioc-xvector. 146s Preparing to unpack .../177-r-bioc-xvector_0.42.0-1_s390x.deb ... 146s Unpacking r-bioc-xvector (0.42.0-1) ... 146s Selecting previously unselected package r-cran-bitops. 146s Preparing to unpack .../178-r-cran-bitops_1.0-7-1_s390x.deb ... 146s Unpacking r-cran-bitops (1.0-7-1) ... 146s Selecting previously unselected package r-cran-rcurl. 146s Preparing to unpack .../179-r-cran-rcurl_1.98-1.14+dfsg-1_s390x.deb ... 146s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 146s Selecting previously unselected package r-bioc-genomeinfodbdata. 146s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 146s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 146s Selecting previously unselected package r-bioc-genomeinfodb. 146s Preparing to unpack .../181-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 146s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 146s Selecting previously unselected package r-cran-crayon. 146s Preparing to unpack .../182-r-cran-crayon_1.5.2-1_all.deb ... 146s Unpacking r-cran-crayon (1.5.2-1) ... 146s Selecting previously unselected package r-bioc-biostrings. 146s Preparing to unpack .../183-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 146s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 147s Selecting previously unselected package r-bioc-keggrest. 147s Preparing to unpack .../184-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 147s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 147s Selecting previously unselected package r-bioc-annotationdbi. 147s Preparing to unpack .../185-r-bioc-annotationdbi_1.64.1-1_all.deb ... 147s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 147s Selecting previously unselected package r-cran-r.methodss3. 147s Preparing to unpack .../186-r-cran-r.methodss3_1.8.2-1_all.deb ... 147s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 147s Selecting previously unselected package r-cran-r.oo. 147s Preparing to unpack .../187-r-cran-r.oo_1.26.0-1_all.deb ... 147s Unpacking r-cran-r.oo (1.26.0-1) ... 147s Selecting previously unselected package r-cran-r.utils. 147s Preparing to unpack .../188-r-cran-r.utils_2.12.3-1_all.deb ... 147s Unpacking r-cran-r.utils (2.12.3-1) ... 147s Selecting previously unselected package r-cran-matrixstats. 147s Preparing to unpack .../189-r-cran-matrixstats_1.2.0-1_s390x.deb ... 147s Unpacking r-cran-matrixstats (1.2.0-1) ... 147s Selecting previously unselected package r-bioc-aroma.light. 147s Preparing to unpack .../190-r-bioc-aroma.light_3.32.0-1_all.deb ... 147s Unpacking r-bioc-aroma.light (3.32.0-1) ... 147s Selecting previously unselected package r-cran-generics. 147s Preparing to unpack .../191-r-cran-generics_0.1.3-1_all.deb ... 147s Unpacking r-cran-generics (0.1.3-1) ... 147s Selecting previously unselected package r-cran-magrittr. 147s Preparing to unpack .../192-r-cran-magrittr_2.0.3-1_s390x.deb ... 147s Unpacking r-cran-magrittr (2.0.3-1) ... 147s Selecting previously unselected package r-cran-fansi. 147s Preparing to unpack .../193-r-cran-fansi_1.0.5-1_s390x.deb ... 147s Unpacking r-cran-fansi (1.0.5-1) ... 147s Selecting previously unselected package r-cran-utf8. 147s Preparing to unpack .../194-r-cran-utf8_1.2.4-1_s390x.deb ... 147s Unpacking r-cran-utf8 (1.2.4-1) ... 147s Selecting previously unselected package r-cran-pillar. 147s Preparing to unpack .../195-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 147s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 147s Selecting previously unselected package r-cran-tibble. 147s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 147s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 147s Selecting previously unselected package r-cran-withr. 147s Preparing to unpack .../197-r-cran-withr_2.5.0-1_all.deb ... 147s Unpacking r-cran-withr (2.5.0-1) ... 147s Selecting previously unselected package r-cran-tidyselect. 147s Preparing to unpack .../198-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 147s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 147s Selecting previously unselected package r-cran-dplyr. 147s Preparing to unpack .../199-r-cran-dplyr_1.1.4-1_s390x.deb ... 147s Unpacking r-cran-dplyr (1.1.4-1) ... 147s Selecting previously unselected package r-cran-purrr. 147s Preparing to unpack .../200-r-cran-purrr_1.0.2-1_s390x.deb ... 147s Unpacking r-cran-purrr (1.0.2-1) ... 147s Selecting previously unselected package r-cran-stringi. 147s Preparing to unpack .../201-r-cran-stringi_1.8.3-1_s390x.deb ... 147s Unpacking r-cran-stringi (1.8.3-1) ... 147s Selecting previously unselected package r-cran-stringr. 147s Preparing to unpack .../202-r-cran-stringr_1.5.1-1_all.deb ... 147s Unpacking r-cran-stringr (1.5.1-1) ... 147s Selecting previously unselected package r-cran-tidyr. 147s Preparing to unpack .../203-r-cran-tidyr_1.3.1-1_s390x.deb ... 147s Unpacking r-cran-tidyr (1.3.1-1) ... 147s Selecting previously unselected package r-cran-dbplyr. 147s Preparing to unpack .../204-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 147s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 147s Selecting previously unselected package r-cran-filelock. 147s Preparing to unpack .../205-r-cran-filelock_1.0.3-1_s390x.deb ... 147s Unpacking r-cran-filelock (1.0.3-1) ... 147s Selecting previously unselected package r-bioc-biocfilecache. 147s Preparing to unpack .../206-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 147s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 147s Selecting previously unselected package r-bioc-biocio. 147s Preparing to unpack .../207-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 147s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 147s Selecting previously unselected package r-cran-formatr. 147s Preparing to unpack .../208-r-cran-formatr_1.14-1_all.deb ... 147s Unpacking r-cran-formatr (1.14-1) ... 147s Selecting previously unselected package r-cran-lambda.r. 147s Preparing to unpack .../209-r-cran-lambda.r_1.2.4-2build1_all.deb ... 147s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 147s Selecting previously unselected package r-cran-futile.options. 147s Preparing to unpack .../210-r-cran-futile.options_1.0.1-3build1_all.deb ... 147s Unpacking r-cran-futile.options (1.0.1-3build1) ... 148s Selecting previously unselected package r-cran-futile.logger. 148s Preparing to unpack .../211-r-cran-futile.logger_1.4.3-4build1_all.deb ... 148s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 148s Selecting previously unselected package r-cran-snow. 148s Preparing to unpack .../212-r-cran-snow_1%3a0.4.4-2_all.deb ... 148s Unpacking r-cran-snow (1:0.4.4-2) ... 148s Selecting previously unselected package r-cran-codetools. 148s Preparing to unpack .../213-r-cran-codetools_0.2-19-1_all.deb ... 148s Unpacking r-cran-codetools (0.2-19-1) ... 148s Selecting previously unselected package r-cran-bh. 148s Preparing to unpack .../214-r-cran-bh_1.84.0-1_all.deb ... 148s Unpacking r-cran-bh (1.84.0-1) ... 148s Selecting previously unselected package r-bioc-biocparallel. 148s Preparing to unpack .../215-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 148s Unpacking r-bioc-biocparallel (1.36.0-1) ... 148s Selecting previously unselected package r-cran-base64enc. 148s Preparing to unpack .../216-r-cran-base64enc_0.1-3-3_s390x.deb ... 148s Unpacking r-cran-base64enc (0.1-3-3) ... 148s Selecting previously unselected package r-cran-digest. 148s Preparing to unpack .../217-r-cran-digest_0.6.34-1_s390x.deb ... 148s Unpacking r-cran-digest (0.6.34-1) ... 148s Selecting previously unselected package r-cran-ellipsis. 148s Preparing to unpack .../218-r-cran-ellipsis_0.3.2-2_s390x.deb ... 148s Unpacking r-cran-ellipsis (0.3.2-2) ... 148s Selecting previously unselected package r-cran-htmltools. 148s Preparing to unpack .../219-r-cran-htmltools_0.5.7-1_s390x.deb ... 148s Unpacking r-cran-htmltools (0.5.7-1) ... 148s Selecting previously unselected package r-cran-evaluate. 148s Preparing to unpack .../220-r-cran-evaluate_0.23-1_all.deb ... 148s Unpacking r-cran-evaluate (0.23-1) ... 148s Selecting previously unselected package r-cran-xfun. 148s Preparing to unpack .../221-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 148s Unpacking r-cran-xfun (0.41+dfsg-1) ... 148s Selecting previously unselected package r-cran-highr. 148s Preparing to unpack .../222-r-cran-highr_0.10+dfsg-1_all.deb ... 148s Unpacking r-cran-highr (0.10+dfsg-1) ... 148s Selecting previously unselected package r-cran-yaml. 148s Preparing to unpack .../223-r-cran-yaml_2.3.8-1_s390x.deb ... 148s Unpacking r-cran-yaml (2.3.8-1) ... 148s Selecting previously unselected package libjs-mathjax. 148s Preparing to unpack .../224-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 148s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 149s Selecting previously unselected package r-cran-knitr. 149s Preparing to unpack .../225-r-cran-knitr_1.45+dfsg-1_all.deb ... 149s Unpacking r-cran-knitr (1.45+dfsg-1) ... 149s Selecting previously unselected package r-cran-jquerylib. 149s Preparing to unpack .../226-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 149s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 149s Selecting previously unselected package r-cran-fs. 149s Preparing to unpack .../227-r-cran-fs_1.6.3+dfsg-1_s390x.deb ... 149s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 149s Selecting previously unselected package r-cran-rappdirs. 149s Preparing to unpack .../228-r-cran-rappdirs_0.3.3-1_s390x.deb ... 149s Unpacking r-cran-rappdirs (0.3.3-1) ... 149s Selecting previously unselected package r-cran-sass. 149s Preparing to unpack .../229-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 149s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 149s Selecting previously unselected package r-cran-bslib. 149s Preparing to unpack .../230-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 149s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 149s Selecting previously unselected package r-cran-fontawesome. 149s Preparing to unpack .../231-r-cran-fontawesome_0.5.2-1_all.deb ... 149s Unpacking r-cran-fontawesome (0.5.2-1) ... 149s Selecting previously unselected package r-cran-tinytex. 149s Preparing to unpack .../232-r-cran-tinytex_0.49-1_all.deb ... 149s Unpacking r-cran-tinytex (0.49-1) ... 150s Selecting previously unselected package libjs-modernizr. 150s Preparing to unpack .../233-libjs-modernizr_2.6.2+ds1-5_all.deb ... 150s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 150s Selecting previously unselected package r-cran-pkgkitten. 150s Preparing to unpack .../234-r-cran-pkgkitten_0.2.3-1_all.deb ... 150s Unpacking r-cran-pkgkitten (0.2.3-1) ... 150s Selecting previously unselected package r-cran-rcpp. 150s Preparing to unpack .../235-r-cran-rcpp_1.0.12-1_s390x.deb ... 150s Unpacking r-cran-rcpp (1.0.12-1) ... 150s Selecting previously unselected package r-cran-later. 150s Preparing to unpack .../236-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 150s Unpacking r-cran-later (1.3.2+dfsg-1) ... 150s Selecting previously unselected package r-cran-promises. 150s Preparing to unpack .../237-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 150s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 150s Selecting previously unselected package r-cran-httpuv. 150s Preparing to unpack .../238-r-cran-httpuv_1.6.14+dfsg-1_s390x.deb ... 150s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 150s Selecting previously unselected package r-cran-xtable. 150s Preparing to unpack .../239-r-cran-xtable_1%3a1.8-4-2_all.deb ... 150s Unpacking r-cran-xtable (1:1.8-4-2) ... 150s Selecting previously unselected package r-cran-sourcetools. 150s Preparing to unpack .../240-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 150s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 150s Selecting previously unselected package r-cran-commonmark. 150s Preparing to unpack .../241-r-cran-commonmark_1.9.1-1_s390x.deb ... 150s Unpacking r-cran-commonmark (1.9.1-1) ... 150s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 150s Preparing to unpack .../242-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 150s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 150s Selecting previously unselected package r-cran-shiny. 150s Preparing to unpack .../243-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 150s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 150s Selecting previously unselected package r-cran-rmarkdown. 150s Preparing to unpack .../244-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 150s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 150s Selecting previously unselected package r-cran-bookdown. 150s Preparing to unpack .../245-r-cran-bookdown_0.37+dfsg-1_all.deb ... 150s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 150s Selecting previously unselected package r-cran-biocmanager. 150s Preparing to unpack .../246-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 150s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 150s Selecting previously unselected package tex-common. 150s Preparing to unpack .../247-tex-common_6.18_all.deb ... 150s Unpacking tex-common (6.18) ... 150s Selecting previously unselected package t1utils. 150s Preparing to unpack .../248-t1utils_1.41-4build2_s390x.deb ... 150s Unpacking t1utils (1.41-4build2) ... 150s Selecting previously unselected package texlive-binaries. 150s Preparing to unpack .../249-texlive-binaries_2023.20230311.66589-9_s390x.deb ... 150s Unpacking texlive-binaries (2023.20230311.66589-9) ... 151s Selecting previously unselected package texlive-base. 151s Preparing to unpack .../250-texlive-base_2023.20240207-1_all.deb ... 151s Unpacking texlive-base (2023.20240207-1) ... 153s Selecting previously unselected package texlive-latex-base. 153s Preparing to unpack .../251-texlive-latex-base_2023.20240207-1_all.deb ... 153s Unpacking texlive-latex-base (2023.20240207-1) ... 153s Selecting previously unselected package texlive-bibtex-extra. 153s Preparing to unpack .../252-texlive-bibtex-extra_2023.20240207-1_all.deb ... 153s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 161s Selecting previously unselected package r-bioc-biocstyle. 161s Preparing to unpack .../253-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 161s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 161s Selecting previously unselected package r-cran-xml. 161s Preparing to unpack .../254-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 161s Unpacking r-cran-xml (3.99-0.16.1-1) ... 161s Selecting previously unselected package r-cran-hms. 161s Preparing to unpack .../255-r-cran-hms_1.1.3-1_all.deb ... 161s Unpacking r-cran-hms (1.1.3-1) ... 161s Selecting previously unselected package r-cran-prettyunits. 161s Preparing to unpack .../256-r-cran-prettyunits_1.2.0-1_all.deb ... 161s Unpacking r-cran-prettyunits (1.2.0-1) ... 161s Selecting previously unselected package r-cran-progress. 161s Preparing to unpack .../257-r-cran-progress_1.2.3-1_all.deb ... 161s Unpacking r-cran-progress (1.2.3-1) ... 161s Selecting previously unselected package r-cran-xml2. 161s Preparing to unpack .../258-r-cran-xml2_1.3.6-1_s390x.deb ... 161s Unpacking r-cran-xml2 (1.3.6-1) ... 161s Selecting previously unselected package r-bioc-biomart. 161s Preparing to unpack .../259-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 161s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 161s Selecting previously unselected package r-cran-lattice. 161s Preparing to unpack .../260-r-cran-lattice_0.22-5-1_s390x.deb ... 161s Unpacking r-cran-lattice (0.22-5-1) ... 161s Selecting previously unselected package r-cran-matrix. 161s Preparing to unpack .../261-r-cran-matrix_1.6-5-1_s390x.deb ... 161s Unpacking r-cran-matrix (1.6-5-1) ... 161s Selecting previously unselected package r-bioc-matrixgenerics. 161s Preparing to unpack .../262-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 161s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 161s Selecting previously unselected package r-cran-abind. 161s Preparing to unpack .../263-r-cran-abind_1.4-5-2_all.deb ... 161s Unpacking r-cran-abind (1.4-5-2) ... 161s Selecting previously unselected package r-bioc-s4arrays. 161s Preparing to unpack .../264-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 161s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 161s Selecting previously unselected package r-bioc-sparsearray. 161s Preparing to unpack .../265-r-bioc-sparsearray_1.2.4+dfsg-1_s390x.deb ... 161s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 161s Selecting previously unselected package r-bioc-delayedarray. 162s Preparing to unpack .../266-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ... 162s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 162s Selecting previously unselected package r-bioc-genomicranges. 162s Preparing to unpack .../267-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 162s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 162s Selecting previously unselected package r-bioc-summarizedexperiment. 162s Preparing to unpack .../268-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 162s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 162s Selecting previously unselected package r-cran-locfit. 162s Preparing to unpack .../269-r-cran-locfit_1.5-9.8-1_s390x.deb ... 162s Unpacking r-cran-locfit (1.5-9.8-1) ... 162s Selecting previously unselected package r-cran-gtable. 162s Preparing to unpack .../270-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 162s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 162s Selecting previously unselected package r-cran-isoband. 162s Preparing to unpack .../271-r-cran-isoband_0.2.7-1_s390x.deb ... 162s Unpacking r-cran-isoband (0.2.7-1) ... 162s Selecting previously unselected package r-cran-mass. 162s Preparing to unpack .../272-r-cran-mass_7.3-60.0.1-1_s390x.deb ... 162s Unpacking r-cran-mass (7.3-60.0.1-1) ... 162s Selecting previously unselected package r-cran-nlme. 162s Preparing to unpack .../273-r-cran-nlme_3.1.164-1_s390x.deb ... 162s Unpacking r-cran-nlme (3.1.164-1) ... 162s Selecting previously unselected package r-cran-mgcv. 162s Preparing to unpack .../274-r-cran-mgcv_1.9-1-1_s390x.deb ... 162s Unpacking r-cran-mgcv (1.9-1-1) ... 162s Selecting previously unselected package r-cran-farver. 162s Preparing to unpack .../275-r-cran-farver_2.1.1-1_s390x.deb ... 162s Unpacking r-cran-farver (2.1.1-1) ... 162s Selecting previously unselected package r-cran-labeling. 162s Preparing to unpack .../276-r-cran-labeling_0.4.3-1_all.deb ... 162s Unpacking r-cran-labeling (0.4.3-1) ... 162s Selecting previously unselected package r-cran-colorspace. 162s Preparing to unpack .../277-r-cran-colorspace_2.1-0+dfsg-1_s390x.deb ... 162s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 162s Selecting previously unselected package r-cran-munsell. 162s Preparing to unpack .../278-r-cran-munsell_0.5.0-2build1_all.deb ... 162s Unpacking r-cran-munsell (0.5.0-2build1) ... 162s Selecting previously unselected package r-cran-rcolorbrewer. 162s Preparing to unpack .../279-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 162s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 162s Selecting previously unselected package r-cran-viridislite. 162s Preparing to unpack .../280-r-cran-viridislite_0.4.2-2_all.deb ... 162s Unpacking r-cran-viridislite (0.4.2-2) ... 162s Selecting previously unselected package r-cran-scales. 162s Preparing to unpack .../281-r-cran-scales_1.3.0-1_all.deb ... 162s Unpacking r-cran-scales (1.3.0-1) ... 162s Selecting previously unselected package r-cran-ggplot2. 162s Preparing to unpack .../282-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 162s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 162s Selecting previously unselected package r-cran-rcpparmadillo. 162s Preparing to unpack .../283-r-cran-rcpparmadillo_0.12.8.0.0-1_s390x.deb ... 162s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 162s Selecting previously unselected package r-bioc-deseq2. 162s Preparing to unpack .../284-r-bioc-deseq2_1.42.0+dfsg-1_s390x.deb ... 162s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 162s Selecting previously unselected package r-bioc-rhtslib. 162s Preparing to unpack .../285-r-bioc-rhtslib_2.4.1+dfsg-1_s390x.deb ... 162s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 163s Selecting previously unselected package r-bioc-rsamtools. 163s Preparing to unpack .../286-r-bioc-rsamtools_2.18.0+dfsg-1build1_s390x.deb ... 163s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 163s Selecting previously unselected package r-bioc-genomicalignments. 163s Preparing to unpack .../287-r-bioc-genomicalignments_1.38.2-1_s390x.deb ... 163s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 163s Selecting previously unselected package r-cran-hwriter. 163s Preparing to unpack .../288-r-cran-hwriter_1.3.2.1-1_all.deb ... 163s Unpacking r-cran-hwriter (1.3.2.1-1) ... 163s Selecting previously unselected package r-cran-jpeg. 163s Preparing to unpack .../289-r-cran-jpeg_0.1-10-1_s390x.deb ... 163s Unpacking r-cran-jpeg (0.1-10-1) ... 163s Selecting previously unselected package r-cran-deldir. 163s Preparing to unpack .../290-r-cran-deldir_2.0-4-1_s390x.deb ... 163s Unpacking r-cran-deldir (2.0-4-1) ... 163s Selecting previously unselected package r-cran-rcppeigen. 163s Preparing to unpack .../291-r-cran-rcppeigen_0.3.3.9.4-1_s390x.deb ... 163s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 163s Selecting previously unselected package r-cran-interp. 163s Preparing to unpack .../292-r-cran-interp_1.1-6-1_s390x.deb ... 163s Unpacking r-cran-interp (1.1-6-1) ... 163s Selecting previously unselected package r-cran-latticeextra. 163s Preparing to unpack .../293-r-cran-latticeextra_0.6-30-1_all.deb ... 163s Unpacking r-cran-latticeextra (0.6-30-1) ... 163s Selecting previously unselected package r-bioc-shortread. 163s Preparing to unpack .../294-r-bioc-shortread_1.60.0-2_s390x.deb ... 163s Unpacking r-bioc-shortread (1.60.0-2) ... 163s Selecting previously unselected package r-cran-rjson. 163s Preparing to unpack .../295-r-cran-rjson_0.2.21-1_s390x.deb ... 163s Unpacking r-cran-rjson (0.2.21-1) ... 163s Selecting previously unselected package r-cran-restfulr. 163s Preparing to unpack .../296-r-cran-restfulr_0.0.15-1_s390x.deb ... 163s Unpacking r-cran-restfulr (0.0.15-1) ... 163s Selecting previously unselected package r-bioc-rtracklayer. 163s Preparing to unpack .../297-r-bioc-rtracklayer_1.62.0-1_s390x.deb ... 163s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 163s Selecting previously unselected package r-bioc-genomicfeatures. 163s Preparing to unpack .../298-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 163s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 163s Selecting previously unselected package r-bioc-edaseq. 163s Preparing to unpack .../299-r-bioc-edaseq_2.36.0+dfsg-1_all.deb ... 163s Unpacking r-bioc-edaseq (2.36.0+dfsg-1) ... 163s Selecting previously unselected package r-cran-statmod. 163s Preparing to unpack .../300-r-cran-statmod_1.5.0-1_s390x.deb ... 163s Unpacking r-cran-statmod (1.5.0-1) ... 163s Selecting previously unselected package r-bioc-limma. 163s Preparing to unpack .../301-r-bioc-limma_3.58.1+dfsg-1_s390x.deb ... 163s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 163s Selecting previously unselected package r-bioc-edger. 163s Preparing to unpack .../302-r-bioc-edger_4.0.16+dfsg-1_s390x.deb ... 163s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 163s Selecting previously unselected package r-cran-brio. 163s Preparing to unpack .../303-r-cran-brio_1.1.4-1_s390x.deb ... 163s Unpacking r-cran-brio (1.1.4-1) ... 163s Selecting previously unselected package r-cran-ps. 163s Preparing to unpack .../304-r-cran-ps_1.7.6-1_s390x.deb ... 163s Unpacking r-cran-ps (1.7.6-1) ... 163s Selecting previously unselected package r-cran-processx. 163s Preparing to unpack .../305-r-cran-processx_3.8.3-1_s390x.deb ... 163s Unpacking r-cran-processx (3.8.3-1) ... 163s Selecting previously unselected package r-cran-callr. 163s Preparing to unpack .../306-r-cran-callr_3.7.3-2_all.deb ... 163s Unpacking r-cran-callr (3.7.3-2) ... 163s Selecting previously unselected package r-cran-desc. 163s Preparing to unpack .../307-r-cran-desc_1.4.3-1_all.deb ... 163s Unpacking r-cran-desc (1.4.3-1) ... 163s Selecting previously unselected package r-cran-diffobj. 163s Preparing to unpack .../308-r-cran-diffobj_0.3.5-1_s390x.deb ... 163s Unpacking r-cran-diffobj (0.3.5-1) ... 164s Selecting previously unselected package r-cran-kernsmooth. 164s Preparing to unpack .../309-r-cran-kernsmooth_2.23-22-1_s390x.deb ... 164s Unpacking r-cran-kernsmooth (2.23-22-1) ... 164s Selecting previously unselected package r-cran-pkgbuild. 164s Preparing to unpack .../310-r-cran-pkgbuild_1.4.3-1_all.deb ... 164s Unpacking r-cran-pkgbuild (1.4.3-1) ... 164s Selecting previously unselected package r-cran-rprojroot. 164s Preparing to unpack .../311-r-cran-rprojroot_2.0.4-1_all.deb ... 164s Unpacking r-cran-rprojroot (2.0.4-1) ... 164s Selecting previously unselected package r-cran-pkgload. 164s Preparing to unpack .../312-r-cran-pkgload_1.3.4-1_all.deb ... 164s Unpacking r-cran-pkgload (1.3.4-1) ... 164s Selecting previously unselected package r-cran-praise. 164s Preparing to unpack .../313-r-cran-praise_1.0.0-4build1_all.deb ... 164s Unpacking r-cran-praise (1.0.0-4build1) ... 164s Selecting previously unselected package r-cran-rematch2. 164s Preparing to unpack .../314-r-cran-rematch2_2.1.2-2build1_all.deb ... 164s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 164s Selecting previously unselected package r-cran-waldo. 164s Preparing to unpack .../315-r-cran-waldo_0.5.2-1build1_all.deb ... 164s Unpacking r-cran-waldo (0.5.2-1build1) ... 164s Selecting previously unselected package r-cran-testthat. 164s Preparing to unpack .../316-r-cran-testthat_3.2.1-1_s390x.deb ... 164s Unpacking r-cran-testthat (3.2.1-1) ... 164s Selecting previously unselected package autopkgtest-satdep. 164s Preparing to unpack .../317-1-autopkgtest-satdep.deb ... 164s Unpacking autopkgtest-satdep (0) ... 164s Setting up libjs-json (0~20221030+~1.0.8-1) ... 164s Setting up javascript-common (11+nmu1) ... 164s Setting up libgraphite2-3:s390x (1.3.14-2) ... 164s Setting up libpixman-1-0:s390x (0.42.2-1) ... 164s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 164s Setting up libpaper1:s390x (1.1.29) ... 164s 164s Creating config file /etc/papersize with new version 164s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 164s Setting up libxpm4:s390x (1:3.5.17-1) ... 164s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 164s Setting up libxi6:s390x (2:1.8.1-1) ... 164s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 164s Setting up libdatrie1:s390x (0.2.13-3) ... 164s Setting up libjs-popper.js (1.16.1+ds-6) ... 164s Setting up libxcb-render0:s390x (1.15-1) ... 164s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 164s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 164s Setting up libjs-lunr (2.3.9~dfsg-2) ... 164s Setting up unzip (6.0-28ubuntu3) ... 164s Setting up liblatex-tounicode-perl (0.54-2) ... 164s Setting up x11-common (1:7.7+23ubuntu2) ... 164s Setting up node-html5shiv (3.7.3+dfsg-5) ... 164s Setting up libpsl5t64:s390x (0.21.2-1.1) ... 164s Setting up libdeflate0:s390x (1.19-1) ... 164s Setting up linux-libc-dev:s390x (6.8.0-11.11) ... 164s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 164s Setting up libxcb-shm0:s390x (1.15-1) ... 164s Setting up libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 164s Setting up libpaper-utils (1.1.29) ... 164s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 164s Setting up libjs-modernizr (2.6.2+ds1-5) ... 164s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 164s Setting up libpcre2-16-0:s390x (10.42-4ubuntu1) ... 164s Setting up libjs-es5-shim (4.6.7-2) ... 164s Setting up tex-common (6.18) ... 165s update-language: texlive-base not installed and configured, doing nothing! 165s Setting up libio-string-perl (1.08-4) ... 165s Setting up zip (3.0-13) ... 165s Setting up libpcre2-32-0:s390x (10.42-4ubuntu1) ... 165s Setting up libblas3:s390x (3.12.0-3) ... 165s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 165s Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ... 165s Setting up libpkgconf3:s390x (1.8.1-2) ... 165s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 165s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 165s Setting up libteckit0:s390x (2.5.12+ds1-1) ... 165s Setting up t1utils (1.41-4build2) ... 165s Setting up libtexlua53-5:s390x (2023.20230311.66589-9) ... 165s Setting up libjs-d3 (3.5.17-4) ... 165s Setting up fonts-dejavu-mono (2.37-8) ... 165s Setting up libmpc3:s390x (1.3.1-1) ... 165s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ... 165s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 165s Setting up icu-devtools (74.2-1ubuntu1) ... 165s Setting up fonts-dejavu-core (2.37-8) ... 165s Setting up pkgconf-bin (1.8.1-2) ... 165s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 165s Setting up libkpathsea6:s390x (2023.20230311.66589-9) ... 165s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 165s Setting up libwebp7:s390x (1.3.2-0.4) ... 165s Setting up liblzma-dev:s390x (5.4.5-0.3) ... 165s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ... 165s Setting up libpcre2-posix3:s390x (10.42-4ubuntu1) ... 165s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 165s Setting up libnsl-dev:s390x (1.3.0-3) ... 165s Setting up libcrypt-dev:s390x (1:4.4.36-4) ... 165s Setting up libasan8:s390x (14-20240303-1ubuntu1) ... 165s Setting up fonts-lmodern (2.005-1) ... 165s Setting up liblua5.4-0:s390x (5.4.6-3) ... 165s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 165s Setting up libthai-data (0.1.29-2) ... 165s Setting up node-bootstrap-sass (3.4.3-2) ... 165s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 165s Setting up libxss1:s390x (1:1.2.3-1build2) ... 165s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 165s Setting up pandoc-data (3.1.3-1) ... 165s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 165s Setting up libisl23:s390x (0.26-3) ... 165s Setting up libc-dev-bin (2.39-0ubuntu2) ... 165s Setting up node-normalize.css (8.0.1-5) ... 165s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 165s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 165s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 165s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ... 165s Setting up libblas-dev:s390x (3.12.0-3) ... 165s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 165s Setting up dctrl-tools (2.24-3build2) ... 165s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 165s Setting up libitm1:s390x (14-20240303-1ubuntu1) ... 165s Setting up libsynctex2:s390x (2023.20230311.66589-9) ... 165s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 165s Setting up libpotrace0:s390x (1.16-2) ... 165s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 165s Setting up libice6:s390x (2:1.0.10-1build2) ... 165s Setting up liblapack3:s390x (3.12.0-3) ... 165s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 165s Setting up libcurl4t64:s390x (8.5.0-2ubuntu7) ... 165s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 165s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 165s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 165s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 165s Setting up pkgconf:s390x (1.8.1-2) ... 165s Setting up libthai0:s390x (0.1.29-2) ... 165s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 165s Setting up libptexenc1:s390x (2023.20230311.66589-9) ... 165s Setting up cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 165s Setting up pandoc (3.1.3+ds-2) ... 165s Setting up liblapack-dev:s390x (3.12.0-3) ... 165s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 165s Setting up pkg-config:s390x (1.8.1-2) ... 165s Setting up libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 165s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 165s Setting up libc6-dev:s390x (2.39-0ubuntu2) ... 165s Setting up curl (8.5.0-2ubuntu7) ... 165s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 165s Setting up libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 165s Setting up libsm6:s390x (2:1.2.3-1build2) ... 165s Setting up libicu-dev:s390x (74.2-1ubuntu1) ... 165s Setting up libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 165s Setting up libbz2-dev:s390x (1.0.8-5ubuntu1) ... 165s Setting up fontconfig (2.15.0-1ubuntu1) ... 167s Regenerating fonts cache... done. 167s Setting up libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 167s Setting up libxft2:s390x (2.3.6-1) ... 167s Setting up libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 167s Setting up libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 167s Setting up libpcre2-dev:s390x (10.42-4ubuntu1) ... 167s Setting up cpp-13 (13.2.0-17ubuntu2) ... 167s Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 167s Setting up libtk8.6:s390x (8.6.13-2) ... 167s Setting up libpango-1.0-0:s390x (1.51.0+ds-4) ... 167s Setting up libreadline-dev:s390x (8.2-3) ... 167s Setting up libcairo2:s390x (1.18.0-1) ... 167s Setting up gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 167s Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 167s Setting up g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 167s Setting up gcc-13 (13.2.0-17ubuntu2) ... 167s Setting up libxt6:s390x (1:1.2.1-1.1) ... 167s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 167s Setting up cpp (4:13.2.0-7ubuntu1) ... 167s Setting up gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 167s Setting up libboost-dev:s390x (1.83.0.1ubuntu2) ... 167s Setting up libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 167s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 167s Setting up libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 167s Setting up g++-13 (13.2.0-17ubuntu2) ... 167s Setting up libxmu6:s390x (2:1.1.3-3) ... 167s Setting up gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 167s Setting up libpng-dev:s390x (1.6.43-1) ... 167s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 167s Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 167s Setting up libxaw7:s390x (2:1.0.14-1) ... 167s Setting up gcc (4:13.2.0-7ubuntu1) ... 167s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 167s Setting up r-base-core (4.3.2-1build1) ... 167s 167s Creating config file /etc/R/Renviron with new version 167s Setting up r-cran-crayon (1.5.2-1) ... 167s Setting up r-cran-labeling (0.4.3-1) ... 167s Setting up r-cran-sourcetools (0.1.7-1-1) ... 167s Setting up r-cran-futile.options (1.0.1-3build1) ... 167s Setting up r-cran-lattice (0.22-5-1) ... 167s Setting up r-cran-ps (1.7.6-1) ... 167s Setting up r-cran-nlme (3.1.164-1) ... 167s Setting up r-cran-farver (2.1.1-1) ... 167s Setting up r-cran-formatr (1.14-1) ... 167s Setting up r-cran-xml (3.99-0.16.1-1) ... 167s Setting up g++ (4:13.2.0-7ubuntu1) ... 167s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 167s Setting up r-cran-viridislite (0.4.2-2) ... 167s Setting up r-cran-locfit (1.5-9.8-1) ... 167s Setting up texlive-binaries (2023.20230311.66589-9) ... 167s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 167s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 167s Setting up r-cran-statmod (1.5.0-1) ... 167s Setting up build-essential (12.10ubuntu1) ... 167s Setting up r-cran-commonmark (1.9.1-1) ... 167s Setting up r-cran-r6 (2.5.1-1) ... 167s Setting up r-cran-pkgkitten (0.2.3-1) ... 167s Setting up r-cran-jpeg (0.1-10-1) ... 167s Setting up texlive-base (2023.20240207-1) ... 168s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 168s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 168s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 168s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 169s Setting up r-cran-magrittr (2.0.3-1) ... 169s Setting up r-cran-rappdirs (0.3.3-1) ... 169s Setting up r-cran-filelock (1.0.3-1) ... 169s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 169s Setting up r-cran-littler (0.3.19-1) ... 169s Setting up r-cran-bh (1.84.0-1) ... 169s Setting up r-cran-fs (1.6.3+dfsg-1) ... 169s Setting up r-cran-rcpp (1.0.12-1) ... 169s Setting up r-cran-curl (5.2.0+dfsg-1) ... 169s Setting up r-cran-codetools (0.2-19-1) ... 169s Setting up r-cran-brio (1.1.4-1) ... 169s Setting up r-cran-diffobj (0.3.5-1) ... 169s Setting up r-bioc-biocgenerics (0.48.1-2) ... 169s Setting up r-cran-rlang (1.1.3-1) ... 169s Setting up r-cran-matrixstats (1.2.0-1) ... 169s Setting up littler (0.3.19-1) ... 169s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 169s Setting up r-cran-xfun (0.41+dfsg-1) ... 169s Setting up r-cran-sys (3.4.2-1) ... 169s Setting up r-cran-plogr (0.2.0-3build1) ... 169s Setting up r-cran-withr (2.5.0-1) ... 169s Setting up r-cran-processx (3.8.3-1) ... 169s Setting up r-cran-mime (0.12-1) ... 169s Setting up r-cran-praise (1.0.0-4build1) ... 169s Setting up r-cran-generics (0.1.3-1) ... 169s Setting up r-cran-base64enc (0.1-3-3) ... 169s Setting up r-cran-abind (1.4-5-2) ... 169s Setting up r-cran-digest (0.6.34-1) ... 169s Setting up r-cran-yaml (2.3.8-1) ... 169s Setting up r-cran-lambda.r (1.2.4-2build1) ... 169s Setting up r-cran-evaluate (0.23-1) ... 169s Setting up r-cran-dbi (1.2.2-1) ... 169s Setting up r-cran-highr (0.10+dfsg-1) ... 169s Setting up r-cran-prettyunits (1.2.0-1) ... 169s Setting up r-cran-fansi (1.0.5-1) ... 169s Setting up r-cran-mass (7.3-60.0.1-1) ... 169s Setting up r-cran-snow (1:0.4.4-2) ... 169s Setting up r-cran-glue (1.7.0-1) ... 169s Setting up r-cran-bit (4.0.5-1) ... 169s Setting up r-cran-xtable (1:1.8-4-2) ... 169s Setting up r-cran-cli (3.6.2-1) ... 169s Setting up gfortran (4:13.2.0-7ubuntu1) ... 169s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 169s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 169s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 169s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 169s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 169s Setting up r-cran-bitops (1.0-7-1) ... 169s Setting up r-cran-rprojroot (2.0.4-1) ... 169s Setting up r-cran-bit64 (4.0.5-1) ... 169s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 169s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 169s Setting up r-cran-deldir (2.0-4-1) ... 169s Setting up r-cran-askpass (1.2.0-1) ... 169s Setting up r-cran-fastmap (1.1.1-1) ... 169s Setting up r-cran-png (0.1-8-1) ... 169s Setting up r-cran-r.methodss3 (1.8.2-1) ... 169s Setting up r-bioc-biobase (2.62.0-1) ... 169s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 169s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 169s Setting up r-cran-utf8 (1.2.4-1) ... 169s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 169s Setting up r-cran-stringi (1.8.3-1) ... 169s Setting up texlive-latex-base (2023.20240207-1) ... 169s Setting up r-cran-hwriter (1.3.2.1-1) ... 169s Setting up r-cran-cpp11 (0.4.7-1) ... 169s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 169s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 169s Setting up r-cran-isoband (0.2.7-1) ... 169s Setting up r-cran-futile.logger (1.4.3-4build1) ... 169s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 169s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 169s Setting up r-cran-later (1.3.2+dfsg-1) ... 169s Setting up r-cran-matrix (1.6-5-1) ... 169s Setting up r-cran-tinytex (0.49-1) ... 169s Setting up r-cran-kernsmooth (2.23-22-1) ... 169s Setting up r-cran-knitr (1.45+dfsg-1) ... 169s Setting up r-cran-mgcv (1.9-1-1) ... 169s Setting up r-cran-cachem (1.0.8-1) ... 169s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 169s Setting up r-bioc-iranges (2.36.0-1) ... 169s Setting up r-cran-rjson (0.2.21-1) ... 169s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 169s Setting up r-cran-restfulr (0.0.15-1) ... 169s Setting up r-cran-vctrs (0.6.5-1) ... 169s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 169s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 169s Setting up r-cran-ellipsis (0.3.2-2) ... 169s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 169s Setting up r-base-dev (4.3.2-1build1) ... 169s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 169s Setting up r-cran-stringr (1.5.1-1) ... 169s Setting up r-bioc-biocparallel (1.36.0-1) ... 169s Setting up r-cran-callr (3.7.3-2) ... 169s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 169s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 169s Setting up r-cran-desc (1.4.3-1) ... 169s Setting up r-cran-xml2 (1.3.6-1) ... 169s Setting up r-cran-munsell (0.5.0-2build1) ... 169s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 169s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 169s Setting up r-cran-r.oo (1.26.0-1) ... 169s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 169s Setting up texlive-bibtex-extra (2023.20240207-1) ... 169s Setting up r-cran-interp (1.1-6-1) ... 169s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 169s Setting up r-cran-httr (1.4.7+dfsg-1) ... 169s Setting up r-cran-hms (1.1.3-1) ... 169s Setting up r-cran-scales (1.3.0-1) ... 169s Setting up r-cran-memoise (2.0.1-1) ... 169s Setting up r-cran-promises (1.2.1+dfsg-1) ... 169s Setting up r-cran-purrr (1.0.2-1) ... 169s Setting up r-cran-blob (1.2.4-1) ... 169s Setting up r-cran-htmltools (0.5.7-1) ... 169s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 169s Setting up r-bioc-xvector (0.42.0-1) ... 169s Setting up r-cran-pkgbuild (1.4.3-1) ... 169s Setting up r-cran-sass (0.4.8+dfsg-1) ... 169s Setting up r-cran-dplyr (1.1.4-1) ... 169s Setting up r-cran-rsqlite (2.3.4-1) ... 169s Setting up r-cran-progress (1.2.3-1) ... 169s Setting up r-cran-pkgload (1.3.4-1) ... 169s Setting up r-cran-r.utils (2.12.3-1) ... 169s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 169s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 169s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 169s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 169s Setting up r-cran-rematch2 (2.1.2-2build1) ... 169s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 169s Setting up r-cran-fontawesome (0.5.2-1) ... 169s Setting up r-cran-latticeextra (0.6-30-1) ... 169s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 169s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 169s Setting up r-cran-waldo (0.5.2-1build1) ... 169s Setting up r-cran-tidyr (1.3.1-1) ... 169s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 169s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 169s Setting up r-bioc-aroma.light (3.32.0-1) ... 169s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 169s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 169s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 169s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 169s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 169s Setting up r-bioc-annotationdbi (1.64.1-1) ... 169s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 169s Setting up r-cran-testthat (3.2.1-1) ... 169s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 169s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 169s Setting up r-bioc-genomicalignments (1.38.2-1) ... 169s Setting up r-cran-bookdown (0.37+dfsg-1) ... 169s Setting up r-bioc-rtracklayer (1.62.0-1) ... 169s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 169s Setting up r-bioc-shortread (1.60.0-2) ... 169s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 169s Setting up r-bioc-edaseq (2.36.0+dfsg-1) ... 169s Setting up autopkgtest-satdep (0) ... 169s Processing triggers for man-db (2.12.0-3) ... 170s Processing triggers for install-info (7.1-3) ... 170s Processing triggers for libc-bin (2.39-0ubuntu2) ... 170s Processing triggers for tex-common (6.18) ... 170s Running updmap-sys. This may take some time... done. 170s Running mktexlsr /var/lib/texmf ... done. 170s Building format(s) --all. 216s This may take some time... done. 225s (Reading database ... 106438 files and directories currently installed.) 225s Removing autopkgtest-satdep (0) ... 226s autopkgtest [18:32:43]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 226s autopkgtest [18:32:43]: test pkg-r-autopkgtest: [----------------------- 226s Test: Try to load the R library EDASeq 226s 226s R version 4.3.2 (2023-10-31) -- "Eye Holes" 226s Copyright (C) 2023 The R Foundation for Statistical Computing 226s Platform: s390x-ibm-linux-gnu (64-bit) 226s 226s R is free software and comes with ABSOLUTELY NO WARRANTY. 226s You are welcome to redistribute it under certain conditions. 226s Type 'license()' or 'licence()' for distribution details. 226s 226s R is a collaborative project with many contributors. 226s Type 'contributors()' for more information and 226s 'citation()' on how to cite R or R packages in publications. 226s 226s Type 'demo()' for some demos, 'help()' for on-line help, or 226s 'help.start()' for an HTML browser interface to help. 226s Type 'q()' to quit R. 226s 226s > library('EDASeq') 226s Loading required package: Biobase 226s Loading required package: BiocGenerics 226s 226s Attaching package: ‘BiocGenerics’ 226s 226s The following objects are masked from ‘package:stats’: 226s 226s IQR, mad, sd, var, xtabs 226s 226s The following objects are masked from ‘package:base’: 226s 226s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 226s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 226s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 226s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 226s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 226s table, tapply, union, unique, unsplit, which.max, which.min 226s 227s Welcome to Bioconductor 227s 227s Vignettes contain introductory material; view with 227s 'browseVignettes()'. To cite Bioconductor, see 227s 'citation("Biobase")', and for packages 'citation("pkgname")'. 227s 227s Loading required package: ShortRead 227s Loading required package: BiocParallel 227s Loading required package: Biostrings 227s Loading required package: S4Vectors 227s Loading required package: stats4 227s 227s Attaching package: ‘S4Vectors’ 227s 227s The following object is masked from ‘package:utils’: 227s 227s findMatches 227s 227s The following objects are masked from ‘package:base’: 227s 227s expand.grid, I, unname 227s 227s Loading required package: IRanges 228s Loading required package: XVector 228s Loading required package: GenomeInfoDb 229s 229s Attaching package: ‘Biostrings’ 229s 229s The following object is masked from ‘package:base’: 229s 229s strsplit 229s 229s Loading required package: Rsamtools 229s Loading required package: GenomicRanges 230s Loading required package: GenomicAlignments 230s Loading required package: SummarizedExperiment 230s Loading required package: MatrixGenerics 230s Loading required package: matrixStats 230s 230s Attaching package: ‘matrixStats’ 230s 230s The following objects are masked from ‘package:Biobase’: 230s 230s anyMissing, rowMedians 230s 230s 230s Attaching package: ‘MatrixGenerics’ 230s 230s The following objects are masked from ‘package:matrixStats’: 230s 230s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 230s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 230s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 230s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 230s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 230s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 230s colWeightedMeans, colWeightedMedians, colWeightedSds, 230s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 230s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 230s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 230s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 230s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 230s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 230s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 230s rowWeightedSds, rowWeightedVars 230s 230s The following object is masked from ‘package:Biobase’: 230s 230s rowMedians 230s 239s > Warning message: 239s package ‘Rsamtools’ was built under R version 4.3.3 239s 239s > 239s Other tests are currently unsupported! 239s They will be progressively added. 240s autopkgtest [18:32:57]: test pkg-r-autopkgtest: -----------------------] 240s pkg-r-autopkgtest PASS 240s autopkgtest [18:32:57]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 240s autopkgtest [18:32:57]: @@@@@@@@@@@@@@@@@@@@ summary 240s pkg-r-autopkgtest PASS 259s Creating nova instance adt-noble-s390x-r-bioc-edaseq-20240316-182857-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...