0s autopkgtest [09:53:50]: starting date: 2024-03-12 0s autopkgtest [09:53:50]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline 0s autopkgtest [09:53:50]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.px4ia13s/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-cran-rcpparmadillo --apt-upgrade r-bioc-deseq2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-rcpparmadillo/0.12.8.1.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-16.secgroup --name adt-noble-s390x-r-bioc-deseq2-20240312-095350-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 378s autopkgtest [10:00:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 378s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 379s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [449 kB] 379s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2784 kB] 380s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [41.4 kB] 380s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 380s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [585 kB] 380s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 380s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 380s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 380s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3089 kB] 381s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 381s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [37.8 kB] 381s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 382s Fetched 7120 kB in 3s (2081 kB/s) 383s Reading package lists... 387s Reading package lists... 387s Building dependency tree... 387s Reading state information... 388s Calculating upgrade... 388s The following packages will be upgraded: 388s klibc-utils libklibc python3-attr 388s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 388s Need to get 217 kB of archives. 388s After this operation, 0 B of additional disk space will be used. 388s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x klibc-utils s390x 2.0.13-4 [114 kB] 388s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libklibc s390x 2.0.13-4 [54.5 kB] 388s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x python3-attr all 23.2.0-2 [48.6 kB] 389s Fetched 217 kB in 0s (508 kB/s) 389s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52188 files and directories currently installed.) 389s Preparing to unpack .../klibc-utils_2.0.13-4_s390x.deb ... 389s Unpacking klibc-utils (2.0.13-4) over (2.0.13-2ubuntu1) ... 389s Preparing to unpack .../libklibc_2.0.13-4_s390x.deb ... 389s Unpacking libklibc:s390x (2.0.13-4) over (2.0.13-2ubuntu1) ... 389s Preparing to unpack .../python3-attr_23.2.0-2_all.deb ... 389s Unpacking python3-attr (23.2.0-2) over (23.2.0-1) ... 389s Setting up python3-attr (23.2.0-2) ... 389s Setting up libklibc:s390x (2.0.13-4) ... 389s Setting up klibc-utils (2.0.13-4) ... 389s Processing triggers for initramfs-tools (0.142ubuntu20) ... 389s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 389s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 393s Using config file '/etc/zipl.conf' 393s Building bootmap in '/boot' 393s Adding IPL section 'ubuntu' (default) 393s Preparing boot device for LD-IPL: vda (0000). 393s Done. 393s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 393s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 393s Reading package lists... 393s Building dependency tree... 393s Reading state information... 394s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 394s Unknown architecture, assuming PC-style ttyS0 394s sh: Attempting to set up Debian/Ubuntu apt sources automatically 394s sh: Distribution appears to be Ubuntu 397s Reading package lists... 397s Building dependency tree... 397s Reading state information... 398s eatmydata is already the newest version (131-1). 398s dbus is already the newest version (1.14.10-4ubuntu1). 398s dbus set to manually installed. 398s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 398s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 398s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 398s Reading package lists... 398s Building dependency tree... 398s Reading state information... 398s rng-tools-debian is already the newest version (2.4). 398s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 398s Reading package lists... 398s Building dependency tree... 398s Reading state information... 399s haveged is already the newest version (1.9.14-1ubuntu1). 399s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 399s Reading package lists... 399s Building dependency tree... 399s Reading state information... 399s The following packages will be REMOVED: 399s cloud-init* python3-configobj* python3-debconf* 399s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 399s After this operation, 3248 kB disk space will be freed. 399s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52188 files and directories currently installed.) 399s Removing cloud-init (24.1-0ubuntu1) ... 400s Removing python3-configobj (5.0.8-3) ... 400s Removing python3-debconf (1.5.86) ... 400s Processing triggers for man-db (2.12.0-3) ... 400s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51799 files and directories currently installed.) 400s Purging configuration files for cloud-init (24.1-0ubuntu1) ... 401s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 401s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 402s Reading package lists... 403s Building dependency tree... 403s Reading state information... 403s linux-generic is already the newest version (6.8.0-11.11+1). 403s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 404s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 404s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 404s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 404s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 404s Hit:5 http://ftpmaster.internal/ubuntu noble-backports InRelease 407s Reading package lists... 407s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 407s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Reading package lists... 407s Building dependency tree...Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 407s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 408s 408s Reading state information... 408s Calculating upgrade... 408s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 408s Reading package lists... 408s Building dependency tree... 408s Reading state information... 408s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 409s autopkgtest [10:00:39]: rebooting testbed after setup commands that affected boot 425s autopkgtest [10:00:55]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 426s autopkgtest [10:00:56]: testbed dpkg architecture: s390x 428s autopkgtest [10:00:58]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-deseq2 428s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 428s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 428s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 429s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-deseq2 1.42.0+dfsg-1 (dsc) [2388 B] 429s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-deseq2 1.42.0+dfsg-1 (tar) [594 kB] 429s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-deseq2 1.42.0+dfsg-1 (diff) [4936 B] 430s gpgv: Signature made Thu Nov 30 13:35:58 2023 UTC 430s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 430s gpgv: issuer "tillea@rki.de" 430s gpgv: Can't check signature: No public key 430s dpkg-source: warning: cannot verify inline signature for ./r-bioc-deseq2_1.42.0+dfsg-1.dsc: no acceptable signature found 430s autopkgtest [10:01:00]: testing package r-bioc-deseq2 version 1.42.0+dfsg-1 430s autopkgtest [10:01:00]: build not needed 432s autopkgtest [10:01:02]: test pkg-r-autopkgtest: preparing testbed 434s Reading package lists... 434s Building dependency tree... 434s Reading state information... 434s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 434s Starting 2 pkgProblemResolver with broken count: 0 434s Done 435s Done 435s Starting pkgProblemResolver with broken count: 0 435s Starting 2 pkgProblemResolver with broken count: 0 435s Done 435s The following additional packages will be installed: 435s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu 435s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 435s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 435s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 435s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 435s gfortran-s390x-linux-gnu hdf5-helpers icu-devtools javascript-common 435s libaec-dev libaec0 libasan8 libatomic1 libblas-dev libblas3 libblosc1 435s libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 435s libcc1-0 libcrypt-dev libcurl4-openssl-dev libdatrie1 libdeflate0 435s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 435s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 435s libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 435s libhdf5-hl-fortran-100 libice6 libicu-dev libisl23 libitm1 libjbig0 435s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 435s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 435s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 435s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 435s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 435s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 435s liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 435s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 435s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 435s libpng-dev libreadline-dev libsharpyuv0 libsm6 libsnappy1v5 libssl-dev 435s libstdc++-13-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 435s libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 435s libxrender1 libxss1 libxt6 linux-libc-dev littler node-bootstrap-sass 435s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 435s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 435s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 435s r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 435s r-bioc-biocio r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart 435s r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats 435s r-bioc-deseq2 r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 435s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 435s r-bioc-glmgampoi r-bioc-hdf5array r-bioc-interactivedisplaybase 435s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 435s r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib 435s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 435s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats 435s r-bioc-summarizedexperiment r-bioc-tximeta r-bioc-tximport 435s r-bioc-tximportdata r-bioc-xvector r-bioc-zlibbioc r-cran-abind 435s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 435s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-brio r-cran-bslib 435s r-cran-cachem r-cran-callr r-cran-cli r-cran-clipr r-cran-codetools 435s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon 435s r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 435s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis 435s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 435s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 435s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 435s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets 435s r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite 435s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 435s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit 435s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 435s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 435s r-cran-pbapply r-cran-pheatmap r-cran-pillar r-cran-pkgbuild 435s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png 435s r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 435s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 435s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl 435s r-cran-readr r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang 435s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales 435s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 435s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 435s r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite 435s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 435s r-cran-xtable r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip 435s zlib1g-dev 435s Suggested packages: 435s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 435s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 435s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 435s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 435s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 435s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 435s libboost-context1.83-dev libboost-contract1.83-dev 435s libboost-coroutine1.83-dev libboost-date-time1.83-dev 435s libboost-exception1.83-dev libboost-fiber1.83-dev 435s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 435s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 435s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 435s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 435s libboost-numpy1.83-dev libboost-program-options1.83-dev 435s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 435s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 435s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 435s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 435s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 435s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 435s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 435s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 435s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 435s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 435s librsvg2-bin groff ghc php python ruby libjs-katex 435s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 435s r-base-html texlive-base texlive-latex-base texlive-plain-generic 435s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 435s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle 435s r-bioc-variantannotation r-bioc-experimenthub r-cran-rcmdcheck r-bioc-all 435s r-bioc-affy r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 435s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 435s r-cran-webmockr r-bioc-bsgenome r-bioc-genefilter r-cran-lobstr 435s r-cran-profmem r-bioc-ggbio r-bioc-gviz r-cran-r.utils r-bioc-edger 435s r-cran-markdown r-bioc-dexseq r-cran-zoo r-bioc-limma r-cran-statmod 435s r-cran-bench r-bioc-scran r-cran-tinytest r-bioc-scrnaseq r-cran-rtsne 435s r-bioc-fishpond r-cran-devtools r-cran-roxygen2 r-cran-ff r-cran-covr 435s r-cran-spelling r-cran-rstudioapi r-cran-kernsmooth r-cran-kernlab 435s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis 435s r-cran-rmysql r-cran-lubridate r-cran-magick r-cran-sf r-cran-getopt 435s r-cran-interp r-cran-gam r-cran-formattable r-cran-nanotime 435s r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr 435s r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-here r-cran-plm 435s Recommended packages: 435s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 435s r-recommended r-doc-html r-cran-remotes r-cran-covr r-cran-thematic 435s r-cran-cliapp r-cran-mockery r-cran-rstudioapi r-cran-whoami r-cran-bench 435s r-cran-decor r-cran-lobstr r-cran-spelling r-cran-webutils 435s r-cran-rpostgresql r-cran-gh r-cran-broom r-cran-rmysql r-cran-future 435s r-cran-testit w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-survival 435s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 435s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 435s r-cran-svglite r-cran-vdiffr r-cran-cairo r-cran-markdown r-cran-jpeg 435s r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 435s r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr 435s r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-future.apply 435s r-cran-lubridate r-cran-mathjaxr r-cran-mockr r-cran-webfakes r-cran-pingr 435s r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit 435s r-cran-dbitest r-cran-gert r-cran-rvest r-cran-dichromat r-cran-data.table 435s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 435s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 435s x11-xserver-utils 435s The following NEW packages will be installed: 435s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu 435s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 435s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 435s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 435s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 435s gfortran-s390x-linux-gnu hdf5-helpers icu-devtools javascript-common 435s libaec-dev libaec0 libasan8 libatomic1 libblas-dev libblas3 libblosc1 435s libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 435s libcc1-0 libcrypt-dev libcurl4-openssl-dev libdatrie1 libdeflate0 435s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 435s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 435s libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 435s libhdf5-hl-fortran-100 libice6 libicu-dev libisl23 libitm1 libjbig0 435s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 435s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 435s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 435s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 435s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 435s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 435s liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 435s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 435s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 435s libpng-dev libreadline-dev libsharpyuv0 libsm6 libsnappy1v5 libssl-dev 435s libstdc++-13-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 435s libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 435s libxrender1 libxss1 libxt6 linux-libc-dev littler node-bootstrap-sass 435s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 435s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 435s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 435s r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 435s r-bioc-biocio r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart 435s r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats 435s r-bioc-deseq2 r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 435s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 435s r-bioc-glmgampoi r-bioc-hdf5array r-bioc-interactivedisplaybase 435s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 435s r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib 435s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 435s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats 435s r-bioc-summarizedexperiment r-bioc-tximeta r-bioc-tximport 435s r-bioc-tximportdata r-bioc-xvector r-bioc-zlibbioc r-cran-abind 435s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 435s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-brio r-cran-bslib 435s r-cran-cachem r-cran-callr r-cran-cli r-cran-clipr r-cran-codetools 435s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon 435s r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 435s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis 435s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 435s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 435s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 435s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets 435s r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite 435s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 435s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit 435s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 435s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 435s r-cran-pbapply r-cran-pheatmap r-cran-pillar r-cran-pkgbuild 435s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png 435s r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 435s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 435s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl 435s r-cran-readr r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang 435s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales 435s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 435s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 435s r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite 435s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 435s r-cran-xtable r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip 435s zlib1g-dev 436s 0 upgraded, 320 newly installed, 0 to remove and 0 not upgraded. 436s 1 not fully installed or removed. 436s Need to get 359 MB of archives. 436s After this operation, 1243 MB of additional disk space will be used. 436s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 436s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 436s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 436s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 436s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 436s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 436s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 437s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 437s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 437s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 437s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 437s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 437s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 437s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 437s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 437s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 438s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 438s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 438s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 438s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 438s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 438s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 438s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 439s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 439s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 439s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 439s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 439s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 439s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 439s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 439s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 439s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 439s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 439s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 439s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 439s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 439s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 439s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 439s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 439s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 439s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 439s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 439s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 439s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 441s Get:45 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 441s Get:46 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4vectors s390x 0.40.2+dfsg-1 [2063 kB] 441s Get:47 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-iranges s390x 2.36.0-1 [2253 kB] 441s Get:48 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 441s Get:49 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1 [794 kB] 441s Get:50 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 441s Get:51 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 442s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 442s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 442s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 442s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 442s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 442s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 442s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 442s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 442s Get:60 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 442s Get:61 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-xvector s390x 0.42.0-1 [621 kB] 442s Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicranges s390x 1.54.1+dfsg-1 [1822 kB] 442s Get:63 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrixstats s390x 1.2.0-1 [513 kB] 442s Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 442s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 442s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 442s Get:67 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 442s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-abind all 1.4-5-2 [63.6 kB] 442s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 442s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-s4arrays s390x 1.2.0+dfsg-1 [501 kB] 442s Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsearray s390x 1.2.4+dfsg-1 [1203 kB] 442s Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedarray s390x 0.28.0+dfsg-1 [1786 kB] 442s Get:73 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 442s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-formatr all 1.14-1 [152 kB] 442s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 442s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 442s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 442s Get:78 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 442s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-codetools all 0.2-19-1 [90.5 kB] 442s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 442s Get:81 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 443s Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 443s Get:83 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 443s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 443s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 443s Get:86 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 443s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 443s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 443s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB] 443s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocparallel s390x 1.36.0-1 [1351 kB] 443s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-locfit s390x 1.5-9.8-1 [511 kB] 443s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 444s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 444s Get:94 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 444s Get:95 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 444s Get:96 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 444s Get:97 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB] 444s Get:98 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 444s Get:99 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-nlme s390x 3.1.164-1 [2268 kB] 444s Get:100 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 444s Get:101 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-farver s390x 2.1.1-1 [1347 kB] 444s Get:102 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB] 444s Get:103 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-colorspace s390x 2.1-0+dfsg-1 [1540 kB] 445s Get:104 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-munsell all 0.5.0-2build1 [208 kB] 445s Get:105 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 445s Get:106 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 445s Get:107 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB] 445s Get:108 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-scales all 1.3.0-1 [603 kB] 445s Get:109 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 445s Get:110 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 445s Get:111 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 445s Get:112 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 445s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 445s Get:114 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 445s Get:115 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 445s Get:116 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 445s Get:117 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 445s Get:118 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 445s Get:119 http://ftpmaster.internal/ubuntu noble/universe s390x littler all 0.3.19-1 [2472 B] 445s Get:120 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 445s Get:121 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 445s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-cran-rcpparmadillo s390x 0.12.8.1.0-1 [869 kB] 445s Get:123 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-deseq2 s390x 1.42.0+dfsg-1 [1235 kB] 445s Get:124 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-brio s390x 1.1.4-1 [37.8 kB] 445s Get:125 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ps s390x 1.7.6-1 [313 kB] 445s Get:126 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-processx s390x 3.8.3-1 [364 kB] 445s Get:127 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-callr all 3.7.3-2 [425 kB] 446s Get:128 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-desc all 1.4.3-1 [359 kB] 446s Get:129 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 446s Get:130 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 446s Get:131 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 446s Get:132 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 446s Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgbuild all 1.4.3-1 [209 kB] 446s Get:134 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rprojroot all 2.0.4-1 [124 kB] 446s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgload all 1.3.4-1 [207 kB] 446s Get:136 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB] 446s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB] 446s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 446s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-waldo all 0.5.2-1build1 [120 kB] 446s Get:140 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-testthat s390x 3.2.1-1 [1688 kB] 446s Get:141 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 446s Get:142 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 446s Get:143 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 446s Get:144 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 446s Get:145 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 446s Get:146 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 446s Get:147 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 446s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 446s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 446s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 446s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 446s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 447s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 447s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 447s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 447s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 447s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 447s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 447s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 447s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 447s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 447s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 447s Get:163 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 447s Get:164 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 447s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 447s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 447s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 447s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 447s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 447s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 447s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 447s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 447s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 447s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 447s Get:175 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 447s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 447s Get:177 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 447s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 449s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 449s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 449s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1 [519 kB] 449s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 449s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 449s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 449s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 449s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 449s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 449s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 449s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 449s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 449s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 449s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 449s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 450s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 450s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pheatmap all 1.0.12-2build1 [78.2 kB] 450s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-tximport all 1.30.0+dfsg-1 [89.5 kB] 450s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-clipr all 0.8.0-1 [53.5 kB] 450s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 450s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit s390x 4.0.5-1 [1067 kB] 450s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bit64 s390x 4.0.5-1 [469 kB] 450s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyselect s390x 1.2.0+dfsg-1 [218 kB] 450s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tzdb s390x 0.4.0-2 [514 kB] 450s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 450s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 450s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vroom s390x 1.6.5-1 [865 kB] 450s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-readr s390x 2.1.5-1 [778 kB] 450s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pbapply all 1.7-2-1 [102 kB] 450s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 450s Get:209 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 450s Get:210 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 450s Get:211 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 451s Get:212 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 451s Get:213 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 451s Get:214 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 451s Get:215 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 451s Get:216 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 451s Get:217 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 452s Get:218 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 452s Get:219 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 452s Get:220 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 452s Get:221 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 453s Get:222 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 453s Get:223 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 453s Get:224 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 453s Get:225 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 453s Get:226 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 453s Get:227 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 453s Get:228 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 453s Get:229 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 454s Get:230 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 454s Get:231 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 454s Get:232 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 454s Get:233 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 454s Get:234 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 454s Get:235 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 454s Get:236 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 454s Get:237 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 454s Get:238 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 454s Get:239 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 454s Get:240 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 454s Get:241 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 454s Get:242 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 454s Get:243 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 454s Get:244 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 454s Get:245 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 454s Get:246 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 455s Get:247 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 455s Get:248 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 455s Get:249 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 455s Get:250 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 455s Get:251 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 455s Get:252 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 455s Get:253 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbi all 1.2.2-1 [823 kB] 455s Get:254 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 455s Get:255 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 455s Get:256 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rsqlite s390x 2.3.4-1 [1454 kB] 455s Get:257 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-curl s390x 5.2.0+dfsg-1 [189 kB] 455s Get:258 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sys s390x 3.4.2-1 [44.5 kB] 455s Get:259 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-askpass s390x 1.2.0-1 [24.5 kB] 455s Get:260 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-openssl s390x 2.1.1+dfsg-2 [402 kB] 455s Get:261 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 455s Get:262 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-png s390x 0.1-8-1 [40.5 kB] 455s Get:263 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biostrings s390x 2.70.2+dfsg-1 [13.6 MB] 455s Get:264 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 455s Get:265 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 455s Get:266 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 455s Get:267 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 456s Get:268 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhtslib s390x 2.4.1+dfsg-1 [1410 kB] 456s Get:269 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rsamtools s390x 2.18.0+dfsg-1 [3688 kB] 456s Get:270 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicalignments s390x 1.38.2-1 [2134 kB] 456s Get:271 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rjson s390x 0.2.21-1 [142 kB] 456s Get:272 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 456s Get:273 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rtracklayer s390x 1.62.0-1 [5119 kB] 456s Get:274 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 456s Get:275 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dplyr s390x 1.1.4-1 [1515 kB] 456s Get:276 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-purrr s390x 1.0.2-1 [501 kB] 456s Get:277 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 456s Get:278 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 456s Get:279 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 456s Get:280 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 456s Get:281 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml2 s390x 1.3.6-1 [342 kB] 456s Get:282 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 456s Get:283 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 457s Get:284 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lazyeval s390x 0.2.2-1build1 [143 kB] 457s Get:285 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 457s Get:286 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-protgenerics all 1.34.0-1 [225 kB] 457s Get:287 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 457s Get:288 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocversion all 3.18.1-1 [11.0 kB] 457s Get:289 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 457s Get:290 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 457s Get:291 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 457s Get:292 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-dt all 0.31+dfsg-1 [265 kB] 457s Get:293 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 457s Get:294 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 457s Get:295 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-tximeta all 1.20.3+dfsg-1 [502 kB] 457s Get:296 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-tximportdata all 1.30.0+ds-1 [9352 B] 457s Get:297 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-sparsematrixstats s390x 1.14.0+dfsg-1 [831 kB] 457s Get:298 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 457s Get:299 http://ftpmaster.internal/ubuntu noble/universe s390x libaec0 s390x 1.1.2-1 [25.7 kB] 457s Get:300 http://ftpmaster.internal/ubuntu noble/universe s390x libsz2 s390x 1.1.2-1 [5346 B] 457s Get:301 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-103-1 s390x 1.10.10+repack-3ubuntu1 [1425 kB] 457s Get:302 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-fortran-102 s390x 1.10.10+repack-3ubuntu1 [91.6 kB] 457s Get:303 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-100 s390x 1.10.10+repack-3ubuntu1 [57.5 kB] 457s Get:304 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-fortran-100 s390x 1.10.10+repack-3ubuntu1 [31.6 kB] 457s Get:305 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-cpp-103-1 s390x 1.10.10+repack-3ubuntu1 [121 kB] 457s Get:306 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-cpp-100 s390x 1.10.10+repack-3ubuntu1 [10.8 kB] 457s Get:307 http://ftpmaster.internal/ubuntu noble/universe s390x libaec-dev s390x 1.1.2-1 [23.1 kB] 458s Get:308 http://ftpmaster.internal/ubuntu noble/main s390x libcurl4-openssl-dev s390x 8.5.0-2ubuntu2 [473 kB] 458s Get:309 http://ftpmaster.internal/ubuntu noble/main s390x libssl-dev s390x 3.0.10-1ubuntu4 [2128 kB] 458s Get:310 http://ftpmaster.internal/ubuntu noble/universe s390x hdf5-helpers s390x 1.10.10+repack-3ubuntu1 [15.6 kB] 458s Get:311 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-dev s390x 1.10.10+repack-3ubuntu1 [2898 kB] 460s Get:312 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhdf5lib s390x 1.24.2+dfsg-1 [96.1 kB] 460s Get:313 http://ftpmaster.internal/ubuntu noble/main s390x libsnappy1v5 s390x 1.1.10-1 [30.0 kB] 460s Get:314 http://ftpmaster.internal/ubuntu noble/universe s390x libblosc1 s390x 1.21.5+ds-1 [27.3 kB] 460s Get:315 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhdf5filters s390x 1.14.1+dfsg-3 [124 kB] 460s Get:316 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rhdf5 s390x 2.46.1+dfsg-1 [814 kB] 460s Get:317 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-hdf5array s390x 1.30.1-1 [8762 kB] 460s Get:318 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 460s Get:319 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-beachmat s390x 2.18.1+ds-1 [1670 kB] 460s Get:320 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-glmgampoi s390x 1.14.3+dfsg-1 [1217 kB] 460s Preconfiguring packages ... 460s Fetched 359 MB in 23s (15.4 MB/s) 460s Selecting previously unselected package zip. 461s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51744 files and directories currently installed.) 461s Preparing to unpack .../000-zip_3.0-13_s390x.deb ... 461s Unpacking zip (3.0-13) ... 461s Selecting previously unselected package unzip. 461s Preparing to unpack .../001-unzip_6.0-28ubuntu3_s390x.deb ... 461s Unpacking unzip (6.0-28ubuntu3) ... 461s Selecting previously unselected package libpaper1:s390x. 461s Preparing to unpack .../002-libpaper1_1.1.29_s390x.deb ... 461s Unpacking libpaper1:s390x (1.1.29) ... 461s Selecting previously unselected package libpaper-utils. 461s Preparing to unpack .../003-libpaper-utils_1.1.29_s390x.deb ... 461s Unpacking libpaper-utils (1.1.29) ... 461s Selecting previously unselected package xdg-utils. 461s Preparing to unpack .../004-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 461s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 461s Selecting previously unselected package libblas3:s390x. 461s Preparing to unpack .../005-libblas3_3.12.0-3_s390x.deb ... 461s Unpacking libblas3:s390x (3.12.0-3) ... 461s Selecting previously unselected package libfreetype6:s390x. 461s Preparing to unpack .../006-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 461s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 461s Selecting previously unselected package fonts-dejavu-mono. 461s Preparing to unpack .../007-fonts-dejavu-mono_2.37-8_all.deb ... 461s Unpacking fonts-dejavu-mono (2.37-8) ... 461s Selecting previously unselected package fonts-dejavu-core. 461s Preparing to unpack .../008-fonts-dejavu-core_2.37-8_all.deb ... 461s Unpacking fonts-dejavu-core (2.37-8) ... 461s Selecting previously unselected package fontconfig-config. 461s Preparing to unpack .../009-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 461s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 461s Selecting previously unselected package libfontconfig1:s390x. 461s Preparing to unpack .../010-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 461s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 461s Selecting previously unselected package libpixman-1-0:s390x. 461s Preparing to unpack .../011-libpixman-1-0_0.42.2-1_s390x.deb ... 461s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 461s Selecting previously unselected package libxcb-render0:s390x. 461s Preparing to unpack .../012-libxcb-render0_1.15-1_s390x.deb ... 461s Unpacking libxcb-render0:s390x (1.15-1) ... 461s Selecting previously unselected package libxcb-shm0:s390x. 461s Preparing to unpack .../013-libxcb-shm0_1.15-1_s390x.deb ... 461s Unpacking libxcb-shm0:s390x (1.15-1) ... 461s Selecting previously unselected package libxrender1:s390x. 461s Preparing to unpack .../014-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 461s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 461s Selecting previously unselected package libcairo2:s390x. 461s Preparing to unpack .../015-libcairo2_1.18.0-1_s390x.deb ... 461s Unpacking libcairo2:s390x (1.18.0-1) ... 461s Selecting previously unselected package libgomp1:s390x. 461s Preparing to unpack .../016-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 461s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 461s Selecting previously unselected package libjpeg-turbo8:s390x. 461s Preparing to unpack .../017-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 461s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 461s Selecting previously unselected package libjpeg8:s390x. 461s Preparing to unpack .../018-libjpeg8_8c-2ubuntu11_s390x.deb ... 461s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 461s Selecting previously unselected package libgfortran5:s390x. 461s Preparing to unpack .../019-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 461s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 461s Selecting previously unselected package liblapack3:s390x. 461s Preparing to unpack .../020-liblapack3_3.12.0-3_s390x.deb ... 461s Unpacking liblapack3:s390x (3.12.0-3) ... 461s Selecting previously unselected package fontconfig. 461s Preparing to unpack .../021-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 461s Unpacking fontconfig (2.15.0-1ubuntu1) ... 461s Selecting previously unselected package libgraphite2-3:s390x. 461s Preparing to unpack .../022-libgraphite2-3_1.3.14-2_s390x.deb ... 461s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 461s Selecting previously unselected package libharfbuzz0b:s390x. 461s Preparing to unpack .../023-libharfbuzz0b_8.3.0-2_s390x.deb ... 461s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 461s Selecting previously unselected package libthai-data. 461s Preparing to unpack .../024-libthai-data_0.1.29-2_all.deb ... 461s Unpacking libthai-data (0.1.29-2) ... 461s Selecting previously unselected package libdatrie1:s390x. 461s Preparing to unpack .../025-libdatrie1_0.2.13-3_s390x.deb ... 461s Unpacking libdatrie1:s390x (0.2.13-3) ... 461s Selecting previously unselected package libthai0:s390x. 461s Preparing to unpack .../026-libthai0_0.1.29-2_s390x.deb ... 461s Unpacking libthai0:s390x (0.1.29-2) ... 461s Selecting previously unselected package libpango-1.0-0:s390x. 461s Preparing to unpack .../027-libpango-1.0-0_1.51.0+ds-4_s390x.deb ... 461s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ... 461s Selecting previously unselected package libpangoft2-1.0-0:s390x. 461s Preparing to unpack .../028-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ... 461s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 461s Selecting previously unselected package libpangocairo-1.0-0:s390x. 461s Preparing to unpack .../029-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 461s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 461s Selecting previously unselected package libtcl8.6:s390x. 461s Preparing to unpack .../030-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 461s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 461s Selecting previously unselected package libdeflate0:s390x. 461s Preparing to unpack .../031-libdeflate0_1.19-1_s390x.deb ... 461s Unpacking libdeflate0:s390x (1.19-1) ... 461s Selecting previously unselected package libjbig0:s390x. 461s Preparing to unpack .../032-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 461s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 461s Selecting previously unselected package libsharpyuv0:s390x. 461s Preparing to unpack .../033-libsharpyuv0_1.3.2-0.4_s390x.deb ... 461s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 461s Selecting previously unselected package libwebp7:s390x. 461s Preparing to unpack .../034-libwebp7_1.3.2-0.4_s390x.deb ... 461s Unpacking libwebp7:s390x (1.3.2-0.4) ... 461s Selecting previously unselected package libtiff6:s390x. 461s Preparing to unpack .../035-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 461s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 461s Selecting previously unselected package libxft2:s390x. 461s Preparing to unpack .../036-libxft2_2.3.6-1_s390x.deb ... 461s Unpacking libxft2:s390x (2.3.6-1) ... 461s Selecting previously unselected package x11-common. 461s Preparing to unpack .../037-x11-common_1%3a7.7+23ubuntu2_all.deb ... 461s Unpacking x11-common (1:7.7+23ubuntu2) ... 461s Selecting previously unselected package libxss1:s390x. 461s Preparing to unpack .../038-libxss1_1%3a1.2.3-1build2_s390x.deb ... 461s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 461s Selecting previously unselected package libtk8.6:s390x. 461s Preparing to unpack .../039-libtk8.6_8.6.13-2_s390x.deb ... 461s Unpacking libtk8.6:s390x (8.6.13-2) ... 462s Selecting previously unselected package libice6:s390x. 462s Preparing to unpack .../040-libice6_2%3a1.0.10-1build2_s390x.deb ... 462s Unpacking libice6:s390x (2:1.0.10-1build2) ... 462s Selecting previously unselected package libsm6:s390x. 462s Preparing to unpack .../041-libsm6_2%3a1.2.3-1build2_s390x.deb ... 462s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 462s Selecting previously unselected package libxt6:s390x. 462s Preparing to unpack .../042-libxt6_1%3a1.2.1-1.1_s390x.deb ... 462s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 462s Selecting previously unselected package r-base-core. 462s Preparing to unpack .../043-r-base-core_4.3.2-1build1_s390x.deb ... 462s Unpacking r-base-core (4.3.2-1build1) ... 462s Selecting previously unselected package r-bioc-biocgenerics. 462s Preparing to unpack .../044-r-bioc-biocgenerics_0.48.1-2_all.deb ... 462s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 462s Selecting previously unselected package r-bioc-s4vectors. 462s Preparing to unpack .../045-r-bioc-s4vectors_0.40.2+dfsg-1_s390x.deb ... 462s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 462s Selecting previously unselected package r-bioc-iranges. 462s Preparing to unpack .../046-r-bioc-iranges_2.36.0-1_s390x.deb ... 462s Unpacking r-bioc-iranges (2.36.0-1) ... 462s Selecting previously unselected package r-cran-bitops. 462s Preparing to unpack .../047-r-cran-bitops_1.0-7-1_s390x.deb ... 462s Unpacking r-cran-bitops (1.0-7-1) ... 462s Selecting previously unselected package r-cran-rcurl. 462s Preparing to unpack .../048-r-cran-rcurl_1.98-1.14+dfsg-1_s390x.deb ... 462s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 462s Selecting previously unselected package r-bioc-genomeinfodbdata. 462s Preparing to unpack .../049-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 462s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 462s Selecting previously unselected package r-bioc-genomeinfodb. 462s Preparing to unpack .../050-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 462s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 462s Selecting previously unselected package libc-dev-bin. 462s Preparing to unpack .../051-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 462s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 462s Selecting previously unselected package linux-libc-dev:s390x. 462s Preparing to unpack .../052-linux-libc-dev_6.8.0-11.11_s390x.deb ... 462s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 462s Selecting previously unselected package libcrypt-dev:s390x. 462s Preparing to unpack .../053-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 462s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 462s Selecting previously unselected package libtirpc-dev:s390x. 462s Preparing to unpack .../054-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 462s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 463s Selecting previously unselected package libnsl-dev:s390x. 463s Preparing to unpack .../055-libnsl-dev_1.3.0-3_s390x.deb ... 463s Unpacking libnsl-dev:s390x (1.3.0-3) ... 463s Selecting previously unselected package rpcsvc-proto. 463s Preparing to unpack .../056-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 463s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 463s Selecting previously unselected package libc6-dev:s390x. 463s Preparing to unpack .../057-libc6-dev_2.39-0ubuntu2_s390x.deb ... 463s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 463s Selecting previously unselected package zlib1g-dev:s390x. 463s Preparing to unpack .../058-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 463s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 463s Selecting previously unselected package r-bioc-zlibbioc. 463s Preparing to unpack .../059-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 463s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 463s Selecting previously unselected package r-bioc-xvector. 463s Preparing to unpack .../060-r-bioc-xvector_0.42.0-1_s390x.deb ... 463s Unpacking r-bioc-xvector (0.42.0-1) ... 463s Selecting previously unselected package r-bioc-genomicranges. 463s Preparing to unpack .../061-r-bioc-genomicranges_1.54.1+dfsg-1_s390x.deb ... 463s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 463s Selecting previously unselected package r-cran-matrixstats. 463s Preparing to unpack .../062-r-cran-matrixstats_1.2.0-1_s390x.deb ... 463s Unpacking r-cran-matrixstats (1.2.0-1) ... 463s Selecting previously unselected package r-bioc-matrixgenerics. 463s Preparing to unpack .../063-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 463s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 463s Selecting previously unselected package r-bioc-biobase. 463s Preparing to unpack .../064-r-bioc-biobase_2.62.0-1_s390x.deb ... 463s Unpacking r-bioc-biobase (2.62.0-1) ... 463s Selecting previously unselected package r-cran-lattice. 463s Preparing to unpack .../065-r-cran-lattice_0.22-5-1_s390x.deb ... 463s Unpacking r-cran-lattice (0.22-5-1) ... 463s Selecting previously unselected package r-cran-matrix. 463s Preparing to unpack .../066-r-cran-matrix_1.6-5-1_s390x.deb ... 463s Unpacking r-cran-matrix (1.6-5-1) ... 463s Selecting previously unselected package r-cran-abind. 463s Preparing to unpack .../067-r-cran-abind_1.4-5-2_all.deb ... 463s Unpacking r-cran-abind (1.4-5-2) ... 463s Selecting previously unselected package r-cran-crayon. 463s Preparing to unpack .../068-r-cran-crayon_1.5.2-1_all.deb ... 463s Unpacking r-cran-crayon (1.5.2-1) ... 463s Selecting previously unselected package r-bioc-s4arrays. 463s Preparing to unpack .../069-r-bioc-s4arrays_1.2.0+dfsg-1_s390x.deb ... 463s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 463s Selecting previously unselected package r-bioc-sparsearray. 463s Preparing to unpack .../070-r-bioc-sparsearray_1.2.4+dfsg-1_s390x.deb ... 463s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 463s Selecting previously unselected package r-bioc-delayedarray. 463s Preparing to unpack .../071-r-bioc-delayedarray_0.28.0+dfsg-1_s390x.deb ... 463s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 463s Selecting previously unselected package r-bioc-summarizedexperiment. 463s Preparing to unpack .../072-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 463s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 463s Selecting previously unselected package r-cran-formatr. 463s Preparing to unpack .../073-r-cran-formatr_1.14-1_all.deb ... 463s Unpacking r-cran-formatr (1.14-1) ... 463s Selecting previously unselected package r-cran-lambda.r. 463s Preparing to unpack .../074-r-cran-lambda.r_1.2.4-2build1_all.deb ... 463s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 463s Selecting previously unselected package r-cran-futile.options. 463s Preparing to unpack .../075-r-cran-futile.options_1.0.1-3build1_all.deb ... 463s Unpacking r-cran-futile.options (1.0.1-3build1) ... 463s Selecting previously unselected package r-cran-futile.logger. 463s Preparing to unpack .../076-r-cran-futile.logger_1.4.3-4build1_all.deb ... 463s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 463s Selecting previously unselected package r-cran-snow. 463s Preparing to unpack .../077-r-cran-snow_1%3a0.4.4-2_all.deb ... 463s Unpacking r-cran-snow (1:0.4.4-2) ... 463s Selecting previously unselected package r-cran-codetools. 463s Preparing to unpack .../078-r-cran-codetools_0.2-19-1_all.deb ... 463s Unpacking r-cran-codetools (0.2-19-1) ... 463s Selecting previously unselected package libitm1:s390x. 463s Preparing to unpack .../079-libitm1_14-20240303-1ubuntu1_s390x.deb ... 463s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 463s Selecting previously unselected package libatomic1:s390x. 463s Preparing to unpack .../080-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 463s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 463s Selecting previously unselected package libasan8:s390x. 463s Preparing to unpack .../081-libasan8_14-20240303-1ubuntu1_s390x.deb ... 463s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 463s Selecting previously unselected package libubsan1:s390x. 463s Preparing to unpack .../082-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 463s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 464s Selecting previously unselected package libgcc-13-dev:s390x. 464s Preparing to unpack .../083-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 464s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 464s Selecting previously unselected package libstdc++-13-dev:s390x. 464s Preparing to unpack .../084-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 464s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 464s Selecting previously unselected package libboost1.83-dev:s390x. 464s Preparing to unpack .../085-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 464s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 466s Selecting previously unselected package libboost-dev:s390x. 466s Preparing to unpack .../086-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 466s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 466s Selecting previously unselected package r-cran-bh. 466s Preparing to unpack .../087-r-cran-bh_1.84.0-1_all.deb ... 466s Unpacking r-cran-bh (1.84.0-1) ... 466s Selecting previously unselected package r-cran-cpp11. 466s Preparing to unpack .../088-r-cran-cpp11_0.4.7-1_all.deb ... 466s Unpacking r-cran-cpp11 (0.4.7-1) ... 467s Selecting previously unselected package r-bioc-biocparallel. 467s Preparing to unpack .../089-r-bioc-biocparallel_1.36.0-1_s390x.deb ... 467s Unpacking r-bioc-biocparallel (1.36.0-1) ... 467s Selecting previously unselected package r-cran-locfit. 467s Preparing to unpack .../090-r-cran-locfit_1.5-9.8-1_s390x.deb ... 467s Unpacking r-cran-locfit (1.5-9.8-1) ... 467s Selecting previously unselected package r-cran-cli. 467s Preparing to unpack .../091-r-cran-cli_3.6.2-1_s390x.deb ... 467s Unpacking r-cran-cli (3.6.2-1) ... 467s Selecting previously unselected package r-cran-glue. 467s Preparing to unpack .../092-r-cran-glue_1.7.0-1_s390x.deb ... 467s Unpacking r-cran-glue (1.7.0-1) ... 467s Selecting previously unselected package r-cran-rlang. 467s Preparing to unpack .../093-r-cran-rlang_1.1.3-1_s390x.deb ... 467s Unpacking r-cran-rlang (1.1.3-1) ... 467s Selecting previously unselected package r-cran-lifecycle. 467s Preparing to unpack .../094-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 467s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 467s Selecting previously unselected package r-cran-gtable. 467s Preparing to unpack .../095-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 467s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 467s Selecting previously unselected package r-cran-isoband. 467s Preparing to unpack .../096-r-cran-isoband_0.2.7-1_s390x.deb ... 467s Unpacking r-cran-isoband (0.2.7-1) ... 467s Selecting previously unselected package r-cran-mass. 467s Preparing to unpack .../097-r-cran-mass_7.3-60.0.1-1_s390x.deb ... 467s Unpacking r-cran-mass (7.3-60.0.1-1) ... 467s Selecting previously unselected package r-cran-nlme. 467s Preparing to unpack .../098-r-cran-nlme_3.1.164-1_s390x.deb ... 467s Unpacking r-cran-nlme (3.1.164-1) ... 467s Selecting previously unselected package r-cran-mgcv. 467s Preparing to unpack .../099-r-cran-mgcv_1.9-1-1_s390x.deb ... 467s Unpacking r-cran-mgcv (1.9-1-1) ... 467s Selecting previously unselected package r-cran-farver. 467s Preparing to unpack .../100-r-cran-farver_2.1.1-1_s390x.deb ... 467s Unpacking r-cran-farver (2.1.1-1) ... 467s Selecting previously unselected package r-cran-labeling. 467s Preparing to unpack .../101-r-cran-labeling_0.4.3-1_all.deb ... 467s Unpacking r-cran-labeling (0.4.3-1) ... 467s Selecting previously unselected package r-cran-colorspace. 467s Preparing to unpack .../102-r-cran-colorspace_2.1-0+dfsg-1_s390x.deb ... 467s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 467s Selecting previously unselected package r-cran-munsell. 467s Preparing to unpack .../103-r-cran-munsell_0.5.0-2build1_all.deb ... 467s Unpacking r-cran-munsell (0.5.0-2build1) ... 467s Selecting previously unselected package r-cran-r6. 467s Preparing to unpack .../104-r-cran-r6_2.5.1-1_all.deb ... 467s Unpacking r-cran-r6 (2.5.1-1) ... 467s Selecting previously unselected package r-cran-rcolorbrewer. 467s Preparing to unpack .../105-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 467s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 467s Selecting previously unselected package r-cran-viridislite. 467s Preparing to unpack .../106-r-cran-viridislite_0.4.2-2_all.deb ... 467s Unpacking r-cran-viridislite (0.4.2-2) ... 467s Selecting previously unselected package r-cran-scales. 467s Preparing to unpack .../107-r-cran-scales_1.3.0-1_all.deb ... 467s Unpacking r-cran-scales (1.3.0-1) ... 467s Selecting previously unselected package r-cran-fansi. 467s Preparing to unpack .../108-r-cran-fansi_1.0.5-1_s390x.deb ... 467s Unpacking r-cran-fansi (1.0.5-1) ... 467s Selecting previously unselected package r-cran-magrittr. 467s Preparing to unpack .../109-r-cran-magrittr_2.0.3-1_s390x.deb ... 467s Unpacking r-cran-magrittr (2.0.3-1) ... 467s Selecting previously unselected package r-cran-utf8. 467s Preparing to unpack .../110-r-cran-utf8_1.2.4-1_s390x.deb ... 467s Unpacking r-cran-utf8 (1.2.4-1) ... 467s Selecting previously unselected package r-cran-vctrs. 467s Preparing to unpack .../111-r-cran-vctrs_0.6.5-1_s390x.deb ... 467s Unpacking r-cran-vctrs (0.6.5-1) ... 467s Selecting previously unselected package r-cran-pillar. 467s Preparing to unpack .../112-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 467s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 467s Selecting previously unselected package r-cran-pkgconfig. 467s Preparing to unpack .../113-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 467s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 467s Selecting previously unselected package r-cran-tibble. 467s Preparing to unpack .../114-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 467s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 467s Selecting previously unselected package r-cran-withr. 467s Preparing to unpack .../115-r-cran-withr_2.5.0-1_all.deb ... 467s Unpacking r-cran-withr (2.5.0-1) ... 467s Selecting previously unselected package r-cran-ggplot2. 467s Preparing to unpack .../116-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 467s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 468s Selecting previously unselected package r-cran-littler. 468s Preparing to unpack .../117-r-cran-littler_0.3.19-1_s390x.deb ... 468s Unpacking r-cran-littler (0.3.19-1) ... 468s Selecting previously unselected package littler. 468s Preparing to unpack .../118-littler_0.3.19-1_all.deb ... 468s Unpacking littler (0.3.19-1) ... 468s Selecting previously unselected package r-cran-pkgkitten. 468s Preparing to unpack .../119-r-cran-pkgkitten_0.2.3-1_all.deb ... 468s Unpacking r-cran-pkgkitten (0.2.3-1) ... 468s Selecting previously unselected package r-cran-rcpp. 468s Preparing to unpack .../120-r-cran-rcpp_1.0.12-1_s390x.deb ... 468s Unpacking r-cran-rcpp (1.0.12-1) ... 468s Selecting previously unselected package r-cran-rcpparmadillo. 468s Preparing to unpack .../121-r-cran-rcpparmadillo_0.12.8.1.0-1_s390x.deb ... 468s Unpacking r-cran-rcpparmadillo (0.12.8.1.0-1) ... 468s Selecting previously unselected package r-bioc-deseq2. 468s Preparing to unpack .../122-r-bioc-deseq2_1.42.0+dfsg-1_s390x.deb ... 468s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 468s Selecting previously unselected package r-cran-brio. 468s Preparing to unpack .../123-r-cran-brio_1.1.4-1_s390x.deb ... 468s Unpacking r-cran-brio (1.1.4-1) ... 468s Selecting previously unselected package r-cran-ps. 468s Preparing to unpack .../124-r-cran-ps_1.7.6-1_s390x.deb ... 468s Unpacking r-cran-ps (1.7.6-1) ... 468s Selecting previously unselected package r-cran-processx. 468s Preparing to unpack .../125-r-cran-processx_3.8.3-1_s390x.deb ... 468s Unpacking r-cran-processx (3.8.3-1) ... 468s Selecting previously unselected package r-cran-callr. 468s Preparing to unpack .../126-r-cran-callr_3.7.3-2_all.deb ... 468s Unpacking r-cran-callr (3.7.3-2) ... 468s Selecting previously unselected package r-cran-desc. 468s Preparing to unpack .../127-r-cran-desc_1.4.3-1_all.deb ... 468s Unpacking r-cran-desc (1.4.3-1) ... 468s Selecting previously unselected package r-cran-digest. 468s Preparing to unpack .../128-r-cran-digest_0.6.34-1_s390x.deb ... 468s Unpacking r-cran-digest (0.6.34-1) ... 468s Selecting previously unselected package r-cran-evaluate. 468s Preparing to unpack .../129-r-cran-evaluate_0.23-1_all.deb ... 468s Unpacking r-cran-evaluate (0.23-1) ... 468s Selecting previously unselected package r-cran-jsonlite. 468s Preparing to unpack .../130-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 468s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 468s Selecting previously unselected package r-cran-fs. 468s Preparing to unpack .../131-r-cran-fs_1.6.3+dfsg-1_s390x.deb ... 468s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 468s Selecting previously unselected package r-cran-pkgbuild. 468s Preparing to unpack .../132-r-cran-pkgbuild_1.4.3-1_all.deb ... 468s Unpacking r-cran-pkgbuild (1.4.3-1) ... 468s Selecting previously unselected package r-cran-rprojroot. 468s Preparing to unpack .../133-r-cran-rprojroot_2.0.4-1_all.deb ... 468s Unpacking r-cran-rprojroot (2.0.4-1) ... 468s Selecting previously unselected package r-cran-pkgload. 468s Preparing to unpack .../134-r-cran-pkgload_1.3.4-1_all.deb ... 468s Unpacking r-cran-pkgload (1.3.4-1) ... 468s Selecting previously unselected package r-cran-praise. 468s Preparing to unpack .../135-r-cran-praise_1.0.0-4build1_all.deb ... 468s Unpacking r-cran-praise (1.0.0-4build1) ... 468s Selecting previously unselected package r-cran-diffobj. 468s Preparing to unpack .../136-r-cran-diffobj_0.3.5-1_s390x.deb ... 468s Unpacking r-cran-diffobj (0.3.5-1) ... 468s Selecting previously unselected package r-cran-rematch2. 468s Preparing to unpack .../137-r-cran-rematch2_2.1.2-2build1_all.deb ... 468s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 468s Selecting previously unselected package r-cran-waldo. 468s Preparing to unpack .../138-r-cran-waldo_0.5.2-1build1_all.deb ... 468s Unpacking r-cran-waldo (0.5.2-1build1) ... 468s Selecting previously unselected package r-cran-testthat. 468s Preparing to unpack .../139-r-cran-testthat_3.2.1-1_s390x.deb ... 468s Unpacking r-cran-testthat (3.2.1-1) ... 469s Selecting previously unselected package r-cran-xfun. 469s Preparing to unpack .../140-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 469s Unpacking r-cran-xfun (0.41+dfsg-1) ... 469s Selecting previously unselected package libjs-highlight.js. 469s Preparing to unpack .../141-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 469s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 469s Selecting previously unselected package libjs-jquery. 469s Preparing to unpack .../142-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 469s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 469s Selecting previously unselected package r-cran-highr. 469s Preparing to unpack .../143-r-cran-highr_0.10+dfsg-1_all.deb ... 469s Unpacking r-cran-highr (0.10+dfsg-1) ... 469s Selecting previously unselected package r-cran-yaml. 469s Preparing to unpack .../144-r-cran-yaml_2.3.8-1_s390x.deb ... 469s Unpacking r-cran-yaml (2.3.8-1) ... 469s Selecting previously unselected package fonts-mathjax. 469s Preparing to unpack .../145-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 469s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 469s Selecting previously unselected package libjs-mathjax. 469s Preparing to unpack .../146-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 469s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 470s Selecting previously unselected package fonts-glyphicons-halflings. 470s Preparing to unpack .../147-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 470s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 470s Selecting previously unselected package libjs-bootstrap. 470s Preparing to unpack .../148-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 470s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 470s Selecting previously unselected package libjs-jquery-datatables. 470s Preparing to unpack .../149-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 470s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 470s Selecting previously unselected package node-normalize.css. 470s Preparing to unpack .../150-node-normalize.css_8.0.1-5_all.deb ... 470s Unpacking node-normalize.css (8.0.1-5) ... 470s Selecting previously unselected package r-cran-knitr. 470s Preparing to unpack .../151-r-cran-knitr_1.45+dfsg-1_all.deb ... 470s Unpacking r-cran-knitr (1.45+dfsg-1) ... 470s Selecting previously unselected package r-cran-base64enc. 470s Preparing to unpack .../152-r-cran-base64enc_0.1-3-3_s390x.deb ... 470s Unpacking r-cran-base64enc (0.1-3-3) ... 470s Selecting previously unselected package r-cran-fastmap. 470s Preparing to unpack .../153-r-cran-fastmap_1.1.1-1_s390x.deb ... 470s Unpacking r-cran-fastmap (1.1.1-1) ... 470s Selecting previously unselected package r-cran-cachem. 471s Preparing to unpack .../154-r-cran-cachem_1.0.8-1_s390x.deb ... 471s Unpacking r-cran-cachem (1.0.8-1) ... 471s Selecting previously unselected package r-cran-ellipsis. 471s Preparing to unpack .../155-r-cran-ellipsis_0.3.2-2_s390x.deb ... 471s Unpacking r-cran-ellipsis (0.3.2-2) ... 471s Selecting previously unselected package r-cran-htmltools. 471s Preparing to unpack .../156-r-cran-htmltools_0.5.7-1_s390x.deb ... 471s Unpacking r-cran-htmltools (0.5.7-1) ... 471s Selecting previously unselected package r-cran-jquerylib. 471s Preparing to unpack .../157-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 471s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 471s Selecting previously unselected package r-cran-memoise. 471s Preparing to unpack .../158-r-cran-memoise_2.0.1-1_all.deb ... 471s Unpacking r-cran-memoise (2.0.1-1) ... 471s Selecting previously unselected package r-cran-mime. 471s Preparing to unpack .../159-r-cran-mime_0.12-1_s390x.deb ... 471s Unpacking r-cran-mime (0.12-1) ... 471s Selecting previously unselected package r-cran-rappdirs. 471s Preparing to unpack .../160-r-cran-rappdirs_0.3.3-1_s390x.deb ... 471s Unpacking r-cran-rappdirs (0.3.3-1) ... 471s Selecting previously unselected package r-cran-sass. 471s Preparing to unpack .../161-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 471s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 471s Selecting previously unselected package node-bootstrap-sass. 471s Preparing to unpack .../162-node-bootstrap-sass_3.4.3-2_all.deb ... 471s Unpacking node-bootstrap-sass (3.4.3-2) ... 471s Selecting previously unselected package javascript-common. 471s Preparing to unpack .../163-javascript-common_11+nmu1_all.deb ... 471s Unpacking javascript-common (11+nmu1) ... 471s Selecting previously unselected package libjs-popper.js. 471s Preparing to unpack .../164-libjs-popper.js_1.16.1+ds-6_all.deb ... 471s Unpacking libjs-popper.js (1.16.1+ds-6) ... 471s Selecting previously unselected package libjs-bootstrap4. 471s Preparing to unpack .../165-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 471s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 471s Selecting previously unselected package r-cran-bslib. 471s Preparing to unpack .../166-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 471s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 471s Selecting previously unselected package r-cran-fontawesome. 471s Preparing to unpack .../167-r-cran-fontawesome_0.5.2-1_all.deb ... 471s Unpacking r-cran-fontawesome (0.5.2-1) ... 471s Selecting previously unselected package r-cran-stringi. 471s Preparing to unpack .../168-r-cran-stringi_1.8.3-1_s390x.deb ... 471s Unpacking r-cran-stringi (1.8.3-1) ... 471s Selecting previously unselected package r-cran-stringr. 471s Preparing to unpack .../169-r-cran-stringr_1.5.1-1_all.deb ... 471s Unpacking r-cran-stringr (1.5.1-1) ... 471s Selecting previously unselected package r-cran-tinytex. 471s Preparing to unpack .../170-r-cran-tinytex_0.49-1_all.deb ... 471s Unpacking r-cran-tinytex (0.49-1) ... 471s Selecting previously unselected package libjs-jquery-ui. 471s Preparing to unpack .../171-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 471s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 471s Selecting previously unselected package libjs-modernizr. 471s Preparing to unpack .../172-libjs-modernizr_2.6.2+ds1-5_all.deb ... 471s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 471s Selecting previously unselected package libjs-prettify. 471s Preparing to unpack .../173-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 471s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 471s Selecting previously unselected package fonts-font-awesome. 471s Preparing to unpack .../174-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 471s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 471s Selecting previously unselected package pandoc-data. 471s Preparing to unpack .../175-pandoc-data_3.1.3-1_all.deb ... 471s Unpacking pandoc-data (3.1.3-1) ... 471s Selecting previously unselected package liblua5.4-0:s390x. 471s Preparing to unpack .../176-liblua5.4-0_5.4.6-3_s390x.deb ... 471s Unpacking liblua5.4-0:s390x (5.4.6-3) ... 471s Selecting previously unselected package pandoc. 471s Preparing to unpack .../177-pandoc_3.1.3+ds-2_s390x.deb ... 471s Unpacking pandoc (3.1.3+ds-2) ... 473s Selecting previously unselected package r-cran-later. 473s Preparing to unpack .../178-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 473s Unpacking r-cran-later (1.3.2+dfsg-1) ... 473s Selecting previously unselected package r-cran-promises. 473s Preparing to unpack .../179-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 473s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 473s Selecting previously unselected package r-cran-httpuv. 473s Preparing to unpack .../180-r-cran-httpuv_1.6.14+dfsg-1_s390x.deb ... 474s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 474s Selecting previously unselected package r-cran-xtable. 474s Preparing to unpack .../181-r-cran-xtable_1%3a1.8-4-2_all.deb ... 474s Unpacking r-cran-xtable (1:1.8-4-2) ... 474s Selecting previously unselected package r-cran-sourcetools. 474s Preparing to unpack .../182-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 474s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 474s Selecting previously unselected package r-cran-commonmark. 474s Preparing to unpack .../183-r-cran-commonmark_1.9.1-1_s390x.deb ... 474s Unpacking r-cran-commonmark (1.9.1-1) ... 474s Selecting previously unselected package libjs-json. 474s Preparing to unpack .../184-libjs-json_0~20221030+~1.0.8-1_all.deb ... 474s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 474s Selecting previously unselected package libjs-es5-shim. 474s Preparing to unpack .../185-libjs-es5-shim_4.6.7-2_all.deb ... 474s Unpacking libjs-es5-shim (4.6.7-2) ... 474s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 474s Preparing to unpack .../186-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 474s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 474s Selecting previously unselected package libjs-sifter.js. 474s Preparing to unpack .../187-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 474s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 474s Selecting previously unselected package libjs-microplugin.js. 474s Preparing to unpack .../188-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 474s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 474s Selecting previously unselected package libjs-jquery-selectize.js. 474s Preparing to unpack .../189-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 474s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 474s Selecting previously unselected package libjs-d3. 474s Preparing to unpack .../190-libjs-d3_3.5.17-4_all.deb ... 474s Unpacking libjs-d3 (3.5.17-4) ... 474s Selecting previously unselected package node-html5shiv. 474s Preparing to unpack .../191-node-html5shiv_3.7.3+dfsg-5_all.deb ... 474s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 474s Selecting previously unselected package r-cran-shiny. 474s Preparing to unpack .../192-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 474s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 474s Selecting previously unselected package r-cran-rmarkdown. 474s Preparing to unpack .../193-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 474s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 474s Selecting previously unselected package r-cran-pheatmap. 474s Preparing to unpack .../194-r-cran-pheatmap_1.0.12-2build1_all.deb ... 474s Unpacking r-cran-pheatmap (1.0.12-2build1) ... 474s Selecting previously unselected package r-bioc-tximport. 474s Preparing to unpack .../195-r-bioc-tximport_1.30.0+dfsg-1_all.deb ... 474s Unpacking r-bioc-tximport (1.30.0+dfsg-1) ... 474s Selecting previously unselected package r-cran-clipr. 474s Preparing to unpack .../196-r-cran-clipr_0.8.0-1_all.deb ... 474s Unpacking r-cran-clipr (0.8.0-1) ... 474s Selecting previously unselected package r-cran-hms. 474s Preparing to unpack .../197-r-cran-hms_1.1.3-1_all.deb ... 474s Unpacking r-cran-hms (1.1.3-1) ... 474s Selecting previously unselected package r-cran-bit. 474s Preparing to unpack .../198-r-cran-bit_4.0.5-1_s390x.deb ... 474s Unpacking r-cran-bit (4.0.5-1) ... 474s Selecting previously unselected package r-cran-bit64. 474s Preparing to unpack .../199-r-cran-bit64_4.0.5-1_s390x.deb ... 474s Unpacking r-cran-bit64 (4.0.5-1) ... 474s Selecting previously unselected package r-cran-tidyselect. 474s Preparing to unpack .../200-r-cran-tidyselect_1.2.0+dfsg-1_s390x.deb ... 474s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 474s Selecting previously unselected package r-cran-tzdb. 474s Preparing to unpack .../201-r-cran-tzdb_0.4.0-2_s390x.deb ... 474s Unpacking r-cran-tzdb (0.4.0-2) ... 474s Selecting previously unselected package r-cran-prettyunits. 474s Preparing to unpack .../202-r-cran-prettyunits_1.2.0-1_all.deb ... 474s Unpacking r-cran-prettyunits (1.2.0-1) ... 474s Selecting previously unselected package r-cran-progress. 474s Preparing to unpack .../203-r-cran-progress_1.2.3-1_all.deb ... 474s Unpacking r-cran-progress (1.2.3-1) ... 474s Selecting previously unselected package r-cran-vroom. 474s Preparing to unpack .../204-r-cran-vroom_1.6.5-1_s390x.deb ... 474s Unpacking r-cran-vroom (1.6.5-1) ... 474s Selecting previously unselected package r-cran-readr. 474s Preparing to unpack .../205-r-cran-readr_2.1.5-1_s390x.deb ... 474s Unpacking r-cran-readr (2.1.5-1) ... 475s Selecting previously unselected package r-cran-pbapply. 475s Preparing to unpack .../206-r-cran-pbapply_1.7-2-1_all.deb ... 475s Unpacking r-cran-pbapply (1.7-2-1) ... 475s Selecting previously unselected package r-cran-biocmanager. 475s Preparing to unpack .../207-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 475s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 475s Selecting previously unselected package dctrl-tools. 475s Preparing to unpack .../208-dctrl-tools_2.24-3build2_s390x.deb ... 475s Unpacking dctrl-tools (2.24-3build2) ... 475s Selecting previously unselected package libisl23:s390x. 475s Preparing to unpack .../209-libisl23_0.26-3_s390x.deb ... 475s Unpacking libisl23:s390x (0.26-3) ... 475s Selecting previously unselected package libmpc3:s390x. 475s Preparing to unpack .../210-libmpc3_1.3.1-1_s390x.deb ... 475s Unpacking libmpc3:s390x (1.3.1-1) ... 475s Selecting previously unselected package cpp-13-s390x-linux-gnu. 475s Preparing to unpack .../211-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 475s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 475s Selecting previously unselected package cpp-13. 475s Preparing to unpack .../212-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 475s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 475s Selecting previously unselected package cpp-s390x-linux-gnu. 475s Preparing to unpack .../213-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 475s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 475s Selecting previously unselected package cpp. 475s Preparing to unpack .../214-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 475s Unpacking cpp (4:13.2.0-7ubuntu1) ... 475s Selecting previously unselected package libcc1-0:s390x. 475s Preparing to unpack .../215-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 475s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 475s Selecting previously unselected package gcc-13-s390x-linux-gnu. 475s Preparing to unpack .../216-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 475s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 475s Selecting previously unselected package gcc-13. 475s Preparing to unpack .../217-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 475s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 475s Selecting previously unselected package gcc-s390x-linux-gnu. 475s Preparing to unpack .../218-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 475s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 476s Selecting previously unselected package gcc. 476s Preparing to unpack .../219-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 476s Unpacking gcc (4:13.2.0-7ubuntu1) ... 476s Selecting previously unselected package g++-13-s390x-linux-gnu. 476s Preparing to unpack .../220-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 476s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 476s Selecting previously unselected package g++-13. 476s Preparing to unpack .../221-g++-13_13.2.0-17ubuntu2_s390x.deb ... 476s Unpacking g++-13 (13.2.0-17ubuntu2) ... 476s Selecting previously unselected package g++-s390x-linux-gnu. 476s Preparing to unpack .../222-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 476s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 476s Selecting previously unselected package g++. 476s Preparing to unpack .../223-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 476s Unpacking g++ (4:13.2.0-7ubuntu1) ... 476s Selecting previously unselected package build-essential. 476s Preparing to unpack .../224-build-essential_12.10ubuntu1_s390x.deb ... 476s Unpacking build-essential (12.10ubuntu1) ... 476s Selecting previously unselected package libgfortran-13-dev:s390x. 476s Preparing to unpack .../225-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 476s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 476s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 476s Preparing to unpack .../226-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 476s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 476s Selecting previously unselected package gfortran-13. 476s Preparing to unpack .../227-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 476s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 476s Selecting previously unselected package gfortran-s390x-linux-gnu. 476s Preparing to unpack .../228-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 476s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 476s Selecting previously unselected package gfortran. 476s Preparing to unpack .../229-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 476s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 476s Selecting previously unselected package libblas-dev:s390x. 476s Preparing to unpack .../230-libblas-dev_3.12.0-3_s390x.deb ... 476s Unpacking libblas-dev:s390x (3.12.0-3) ... 476s Selecting previously unselected package liblapack-dev:s390x. 476s Preparing to unpack .../231-liblapack-dev_3.12.0-3_s390x.deb ... 476s Unpacking liblapack-dev:s390x (3.12.0-3) ... 476s Selecting previously unselected package libncurses-dev:s390x. 476s Preparing to unpack .../232-libncurses-dev_6.4+20240113-1ubuntu1_s390x.deb ... 476s Unpacking libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 477s Selecting previously unselected package libreadline-dev:s390x. 477s Preparing to unpack .../233-libreadline-dev_8.2-3_s390x.deb ... 477s Unpacking libreadline-dev:s390x (8.2-3) ... 477s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 477s Preparing to unpack .../234-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 477s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 477s Selecting previously unselected package libjpeg8-dev:s390x. 477s Preparing to unpack .../235-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 477s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 477s Selecting previously unselected package libjpeg-dev:s390x. 477s Preparing to unpack .../236-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 477s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 477s Selecting previously unselected package libpcre2-16-0:s390x. 477s Preparing to unpack .../237-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ... 477s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ... 477s Selecting previously unselected package libpcre2-32-0:s390x. 477s Preparing to unpack .../238-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ... 477s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ... 477s Selecting previously unselected package libpcre2-posix3:s390x. 477s Preparing to unpack .../239-libpcre2-posix3_10.42-4ubuntu1_s390x.deb ... 477s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ... 477s Selecting previously unselected package libpcre2-dev:s390x. 477s Preparing to unpack .../240-libpcre2-dev_10.42-4ubuntu1_s390x.deb ... 477s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ... 477s Selecting previously unselected package libpng-dev:s390x. 477s Preparing to unpack .../241-libpng-dev_1.6.43-1_s390x.deb ... 477s Unpacking libpng-dev:s390x (1.6.43-1) ... 477s Selecting previously unselected package libbz2-dev:s390x. 477s Preparing to unpack .../242-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 477s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 477s Selecting previously unselected package liblzma-dev:s390x. 477s Preparing to unpack .../243-liblzma-dev_5.4.5-0.3_s390x.deb ... 477s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 477s Selecting previously unselected package icu-devtools. 477s Preparing to unpack .../244-icu-devtools_74.2-1ubuntu1_s390x.deb ... 477s Unpacking icu-devtools (74.2-1ubuntu1) ... 477s Selecting previously unselected package libicu-dev:s390x. 477s Preparing to unpack .../245-libicu-dev_74.2-1ubuntu1_s390x.deb ... 477s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 477s Selecting previously unselected package libpkgconf3:s390x. 477s Preparing to unpack .../246-libpkgconf3_1.8.1-2_s390x.deb ... 477s Unpacking libpkgconf3:s390x (1.8.1-2) ... 477s Selecting previously unselected package pkgconf-bin. 477s Preparing to unpack .../247-pkgconf-bin_1.8.1-2_s390x.deb ... 477s Unpacking pkgconf-bin (1.8.1-2) ... 477s Selecting previously unselected package pkgconf:s390x. 477s Preparing to unpack .../248-pkgconf_1.8.1-2_s390x.deb ... 477s Unpacking pkgconf:s390x (1.8.1-2) ... 477s Selecting previously unselected package pkg-config:s390x. 477s Preparing to unpack .../249-pkg-config_1.8.1-2_s390x.deb ... 477s Unpacking pkg-config:s390x (1.8.1-2) ... 477s Selecting previously unselected package r-base-dev. 477s Preparing to unpack .../250-r-base-dev_4.3.2-1build1_all.deb ... 477s Unpacking r-base-dev (4.3.2-1build1) ... 477s Selecting previously unselected package pkg-r-autopkgtest. 477s Preparing to unpack .../251-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 477s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 477s Selecting previously unselected package r-cran-dbi. 477s Preparing to unpack .../252-r-cran-dbi_1.2.2-1_all.deb ... 477s Unpacking r-cran-dbi (1.2.2-1) ... 477s Selecting previously unselected package r-cran-blob. 477s Preparing to unpack .../253-r-cran-blob_1.2.4-1_all.deb ... 477s Unpacking r-cran-blob (1.2.4-1) ... 477s Selecting previously unselected package r-cran-plogr. 477s Preparing to unpack .../254-r-cran-plogr_0.2.0-3build1_all.deb ... 477s Unpacking r-cran-plogr (0.2.0-3build1) ... 477s Selecting previously unselected package r-cran-rsqlite. 477s Preparing to unpack .../255-r-cran-rsqlite_2.3.4-1_s390x.deb ... 477s Unpacking r-cran-rsqlite (2.3.4-1) ... 477s Selecting previously unselected package r-cran-curl. 477s Preparing to unpack .../256-r-cran-curl_5.2.0+dfsg-1_s390x.deb ... 477s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 478s Selecting previously unselected package r-cran-sys. 478s Preparing to unpack .../257-r-cran-sys_3.4.2-1_s390x.deb ... 478s Unpacking r-cran-sys (3.4.2-1) ... 478s Selecting previously unselected package r-cran-askpass. 478s Preparing to unpack .../258-r-cran-askpass_1.2.0-1_s390x.deb ... 478s Unpacking r-cran-askpass (1.2.0-1) ... 478s Selecting previously unselected package r-cran-openssl. 478s Preparing to unpack .../259-r-cran-openssl_2.1.1+dfsg-2_s390x.deb ... 478s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 478s Selecting previously unselected package r-cran-httr. 478s Preparing to unpack .../260-r-cran-httr_1.4.7+dfsg-1_all.deb ... 478s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 478s Selecting previously unselected package r-cran-png. 478s Preparing to unpack .../261-r-cran-png_0.1-8-1_s390x.deb ... 478s Unpacking r-cran-png (0.1-8-1) ... 478s Selecting previously unselected package r-bioc-biostrings. 478s Preparing to unpack .../262-r-bioc-biostrings_2.70.2+dfsg-1_s390x.deb ... 478s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 478s Selecting previously unselected package r-bioc-keggrest. 478s Preparing to unpack .../263-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 478s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 478s Selecting previously unselected package r-bioc-annotationdbi. 478s Preparing to unpack .../264-r-bioc-annotationdbi_1.64.1-1_all.deb ... 478s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 478s Selecting previously unselected package r-bioc-biocio. 478s Preparing to unpack .../265-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 478s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 478s Selecting previously unselected package r-cran-xml. 478s Preparing to unpack .../266-r-cran-xml_3.99-0.16.1-1_s390x.deb ... 478s Unpacking r-cran-xml (3.99-0.16.1-1) ... 478s Selecting previously unselected package r-bioc-rhtslib. 478s Preparing to unpack .../267-r-bioc-rhtslib_2.4.1+dfsg-1_s390x.deb ... 478s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 478s Selecting previously unselected package r-bioc-rsamtools. 478s Preparing to unpack .../268-r-bioc-rsamtools_2.18.0+dfsg-1_s390x.deb ... 478s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 478s Selecting previously unselected package r-bioc-genomicalignments. 478s Preparing to unpack .../269-r-bioc-genomicalignments_1.38.2-1_s390x.deb ... 478s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 478s Selecting previously unselected package r-cran-rjson. 478s Preparing to unpack .../270-r-cran-rjson_0.2.21-1_s390x.deb ... 478s Unpacking r-cran-rjson (0.2.21-1) ... 478s Selecting previously unselected package r-cran-restfulr. 478s Preparing to unpack .../271-r-cran-restfulr_0.0.15-1_s390x.deb ... 478s Unpacking r-cran-restfulr (0.0.15-1) ... 478s Selecting previously unselected package r-bioc-rtracklayer. 478s Preparing to unpack .../272-r-bioc-rtracklayer_1.62.0-1_s390x.deb ... 478s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 478s Selecting previously unselected package r-cran-generics. 478s Preparing to unpack .../273-r-cran-generics_0.1.3-1_all.deb ... 478s Unpacking r-cran-generics (0.1.3-1) ... 478s Selecting previously unselected package r-cran-dplyr. 478s Preparing to unpack .../274-r-cran-dplyr_1.1.4-1_s390x.deb ... 478s Unpacking r-cran-dplyr (1.1.4-1) ... 478s Selecting previously unselected package r-cran-purrr. 478s Preparing to unpack .../275-r-cran-purrr_1.0.2-1_s390x.deb ... 478s Unpacking r-cran-purrr (1.0.2-1) ... 479s Selecting previously unselected package r-cran-tidyr. 479s Preparing to unpack .../276-r-cran-tidyr_1.3.1-1_s390x.deb ... 479s Unpacking r-cran-tidyr (1.3.1-1) ... 479s Selecting previously unselected package r-cran-dbplyr. 479s Preparing to unpack .../277-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 479s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 479s Selecting previously unselected package r-cran-filelock. 479s Preparing to unpack .../278-r-cran-filelock_1.0.3-1_s390x.deb ... 479s Unpacking r-cran-filelock (1.0.3-1) ... 479s Selecting previously unselected package r-bioc-biocfilecache. 479s Preparing to unpack .../279-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 479s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 479s Selecting previously unselected package r-cran-xml2. 479s Preparing to unpack .../280-r-cran-xml2_1.3.6-1_s390x.deb ... 479s Unpacking r-cran-xml2 (1.3.6-1) ... 479s Selecting previously unselected package r-bioc-biomart. 479s Preparing to unpack .../281-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 479s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 479s Selecting previously unselected package r-bioc-genomicfeatures. 479s Preparing to unpack .../282-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 479s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 479s Selecting previously unselected package r-cran-lazyeval. 479s Preparing to unpack .../283-r-cran-lazyeval_0.2.2-1build1_s390x.deb ... 479s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 479s Selecting previously unselected package r-bioc-annotationfilter. 479s Preparing to unpack .../284-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 479s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 479s Selecting previously unselected package r-bioc-protgenerics. 479s Preparing to unpack .../285-r-bioc-protgenerics_1.34.0-1_all.deb ... 479s Unpacking r-bioc-protgenerics (1.34.0-1) ... 479s Selecting previously unselected package r-bioc-ensembldb. 479s Preparing to unpack .../286-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 479s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 479s Selecting previously unselected package r-bioc-biocversion. 479s Preparing to unpack .../287-r-bioc-biocversion_3.18.1-1_all.deb ... 479s Unpacking r-bioc-biocversion (3.18.1-1) ... 479s Selecting previously unselected package r-cran-htmlwidgets. 479s Preparing to unpack .../288-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 479s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 479s Selecting previously unselected package r-cran-crosstalk. 479s Preparing to unpack .../289-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 479s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 479s Selecting previously unselected package libjs-jquery-datatables-extensions. 479s Preparing to unpack .../290-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 479s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 479s Selecting previously unselected package r-cran-dt. 479s Preparing to unpack .../291-r-cran-dt_0.31+dfsg-1_all.deb ... 479s Unpacking r-cran-dt (0.31+dfsg-1) ... 479s Selecting previously unselected package r-bioc-interactivedisplaybase. 479s Preparing to unpack .../292-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 479s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 479s Selecting previously unselected package r-bioc-annotationhub. 479s Preparing to unpack .../293-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 479s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 479s Selecting previously unselected package r-bioc-tximeta. 479s Preparing to unpack .../294-r-bioc-tximeta_1.20.3+dfsg-1_all.deb ... 479s Unpacking r-bioc-tximeta (1.20.3+dfsg-1) ... 479s Selecting previously unselected package r-bioc-tximportdata. 479s Preparing to unpack .../295-r-bioc-tximportdata_1.30.0+ds-1_all.deb ... 479s Unpacking r-bioc-tximportdata (1.30.0+ds-1) ... 479s Selecting previously unselected package r-bioc-sparsematrixstats. 479s Preparing to unpack .../296-r-bioc-sparsematrixstats_1.14.0+dfsg-1_s390x.deb ... 479s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 479s Selecting previously unselected package r-bioc-delayedmatrixstats. 479s Preparing to unpack .../297-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 479s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 479s Selecting previously unselected package libaec0:s390x. 479s Preparing to unpack .../298-libaec0_1.1.2-1_s390x.deb ... 479s Unpacking libaec0:s390x (1.1.2-1) ... 479s Selecting previously unselected package libsz2:s390x. 479s Preparing to unpack .../299-libsz2_1.1.2-1_s390x.deb ... 479s Unpacking libsz2:s390x (1.1.2-1) ... 479s Selecting previously unselected package libhdf5-103-1:s390x. 479s Preparing to unpack .../300-libhdf5-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 479s Unpacking libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 479s Selecting previously unselected package libhdf5-fortran-102:s390x. 479s Preparing to unpack .../301-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_s390x.deb ... 479s Unpacking libhdf5-fortran-102:s390x (1.10.10+repack-3ubuntu1) ... 479s Selecting previously unselected package libhdf5-hl-100:s390x. 479s Preparing to unpack .../302-libhdf5-hl-100_1.10.10+repack-3ubuntu1_s390x.deb ... 479s Unpacking libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 479s Selecting previously unselected package libhdf5-hl-fortran-100:s390x. 479s Preparing to unpack .../303-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_s390x.deb ... 479s Unpacking libhdf5-hl-fortran-100:s390x (1.10.10+repack-3ubuntu1) ... 480s Selecting previously unselected package libhdf5-cpp-103-1:s390x. 480s Preparing to unpack .../304-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 480s Unpacking libhdf5-cpp-103-1:s390x (1.10.10+repack-3ubuntu1) ... 480s Selecting previously unselected package libhdf5-hl-cpp-100:s390x. 480s Preparing to unpack .../305-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_s390x.deb ... 480s Unpacking libhdf5-hl-cpp-100:s390x (1.10.10+repack-3ubuntu1) ... 480s Selecting previously unselected package libaec-dev:s390x. 480s Preparing to unpack .../306-libaec-dev_1.1.2-1_s390x.deb ... 480s Unpacking libaec-dev:s390x (1.1.2-1) ... 480s Selecting previously unselected package libcurl4-openssl-dev:s390x. 480s Preparing to unpack .../307-libcurl4-openssl-dev_8.5.0-2ubuntu2_s390x.deb ... 480s Unpacking libcurl4-openssl-dev:s390x (8.5.0-2ubuntu2) ... 480s Selecting previously unselected package libssl-dev:s390x. 480s Preparing to unpack .../308-libssl-dev_3.0.10-1ubuntu4_s390x.deb ... 480s Unpacking libssl-dev:s390x (3.0.10-1ubuntu4) ... 480s Selecting previously unselected package hdf5-helpers. 480s Preparing to unpack .../309-hdf5-helpers_1.10.10+repack-3ubuntu1_s390x.deb ... 480s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 480s Selecting previously unselected package libhdf5-dev. 480s Preparing to unpack .../310-libhdf5-dev_1.10.10+repack-3ubuntu1_s390x.deb ... 480s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 480s Selecting previously unselected package r-bioc-rhdf5lib. 480s Preparing to unpack .../311-r-bioc-rhdf5lib_1.24.2+dfsg-1_s390x.deb ... 480s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 480s Selecting previously unselected package libsnappy1v5:s390x. 480s Preparing to unpack .../312-libsnappy1v5_1.1.10-1_s390x.deb ... 480s Unpacking libsnappy1v5:s390x (1.1.10-1) ... 480s Selecting previously unselected package libblosc1:s390x. 480s Preparing to unpack .../313-libblosc1_1.21.5+ds-1_s390x.deb ... 480s Unpacking libblosc1:s390x (1.21.5+ds-1) ... 480s Selecting previously unselected package r-bioc-rhdf5filters. 480s Preparing to unpack .../314-r-bioc-rhdf5filters_1.14.1+dfsg-3_s390x.deb ... 480s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 480s Selecting previously unselected package r-bioc-rhdf5. 480s Preparing to unpack .../315-r-bioc-rhdf5_2.46.1+dfsg-1_s390x.deb ... 480s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 480s Selecting previously unselected package r-bioc-hdf5array. 480s Preparing to unpack .../316-r-bioc-hdf5array_1.30.1-1_s390x.deb ... 480s Unpacking r-bioc-hdf5array (1.30.1-1) ... 480s Selecting previously unselected package r-bioc-singlecellexperiment. 480s Preparing to unpack .../317-r-bioc-singlecellexperiment_1.24.0+ds-1_all.deb ... 480s Unpacking r-bioc-singlecellexperiment (1.24.0+ds-1) ... 480s Selecting previously unselected package r-bioc-beachmat. 480s Preparing to unpack .../318-r-bioc-beachmat_2.18.1+ds-1_s390x.deb ... 480s Unpacking r-bioc-beachmat (2.18.1+ds-1) ... 480s Selecting previously unselected package r-bioc-glmgampoi. 480s Preparing to unpack .../319-r-bioc-glmgampoi_1.14.3+dfsg-1_s390x.deb ... 480s Unpacking r-bioc-glmgampoi (1.14.3+dfsg-1) ... 480s Setting up libjs-json (0~20221030+~1.0.8-1) ... 480s Setting up javascript-common (11+nmu1) ... 480s Setting up libgraphite2-3:s390x (1.3.14-2) ... 480s Setting up libpixman-1-0:s390x (0.42.2-1) ... 480s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 480s Setting up libpaper1:s390x (1.1.29) ... 481s 481s Creating config file /etc/papersize with new version 481s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 481s Setting up hdf5-helpers (1.10.10+repack-3ubuntu1) ... 481s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 481s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 481s Setting up libdatrie1:s390x (0.2.13-3) ... 481s Setting up libjs-popper.js (1.16.1+ds-6) ... 481s Setting up libxcb-render0:s390x (1.15-1) ... 481s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 481s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 481s Setting up unzip (6.0-28ubuntu3) ... 481s Setting up x11-common (1:7.7+23ubuntu2) ... 481s Setting up node-html5shiv (3.7.3+dfsg-5) ... 481s Setting up libdeflate0:s390x (1.19-1) ... 481s Setting up linux-libc-dev:s390x (6.8.0-11.11) ... 481s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 481s Setting up libxcb-shm0:s390x (1.15-1) ... 481s Setting up libpaper-utils (1.1.29) ... 481s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 481s Setting up libjs-modernizr (2.6.2+ds1-5) ... 481s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 481s Setting up libpcre2-16-0:s390x (10.42-4ubuntu1) ... 481s Setting up libaec0:s390x (1.1.2-1) ... 481s Setting up libsnappy1v5:s390x (1.1.10-1) ... 481s Setting up libjs-es5-shim (4.6.7-2) ... 481s Setting up zip (3.0-13) ... 481s Setting up libpcre2-32-0:s390x (10.42-4ubuntu1) ... 481s Setting up libblas3:s390x (3.12.0-3) ... 481s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 481s Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ... 481s Setting up libpkgconf3:s390x (1.8.1-2) ... 481s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 481s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 481s Setting up libcurl4-openssl-dev:s390x (8.5.0-2ubuntu2) ... 481s Setting up libjs-d3 (3.5.17-4) ... 481s Setting up fonts-dejavu-mono (2.37-8) ... 481s Setting up libssl-dev:s390x (3.0.10-1ubuntu4) ... 481s Setting up libmpc3:s390x (1.3.1-1) ... 481s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ... 481s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 481s Setting up icu-devtools (74.2-1ubuntu1) ... 481s Setting up fonts-dejavu-core (2.37-8) ... 481s Setting up pkgconf-bin (1.8.1-2) ... 481s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 481s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 481s Setting up libwebp7:s390x (1.3.2-0.4) ... 481s Setting up liblzma-dev:s390x (5.4.5-0.3) ... 481s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ... 481s Setting up libpcre2-posix3:s390x (10.42-4ubuntu1) ... 481s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 481s Setting up libnsl-dev:s390x (1.3.0-3) ... 481s Setting up libcrypt-dev:s390x (1:4.4.36-4) ... 481s Setting up libasan8:s390x (14-20240303-1ubuntu1) ... 481s Setting up libblosc1:s390x (1.21.5+ds-1) ... 481s Setting up liblua5.4-0:s390x (5.4.6-3) ... 481s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 481s Setting up libthai-data (0.1.29-2) ... 481s Setting up node-bootstrap-sass (3.4.3-2) ... 481s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 481s Setting up libxss1:s390x (1:1.2.3-1build2) ... 481s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 481s Setting up pandoc-data (3.1.3-1) ... 481s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 481s Setting up libisl23:s390x (0.26-3) ... 481s Setting up libc-dev-bin (2.39-0ubuntu2) ... 481s Setting up node-normalize.css (8.0.1-5) ... 481s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 481s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 481s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 481s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ... 481s Setting up libblas-dev:s390x (3.12.0-3) ... 481s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 481s Setting up libsz2:s390x (1.1.2-1) ... 481s Setting up dctrl-tools (2.24-3build2) ... 481s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 481s Setting up libitm1:s390x (14-20240303-1ubuntu1) ... 481s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 481s Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 481s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 481s Setting up libice6:s390x (2:1.0.10-1build2) ... 481s Setting up liblapack3:s390x (3.12.0-3) ... 481s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 481s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 481s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 481s Setting up libaec-dev:s390x (1.1.2-1) ... 481s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 481s Setting up pkgconf:s390x (1.8.1-2) ... 481s Setting up libthai0:s390x (0.1.29-2) ... 481s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 481s Setting up cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 481s Setting up pandoc (3.1.3+ds-2) ... 481s Setting up liblapack-dev:s390x (3.12.0-3) ... 481s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 481s Setting up pkg-config:s390x (1.8.1-2) ... 481s Setting up libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 481s Setting up libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 481s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 481s Setting up libhdf5-cpp-103-1:s390x (1.10.10+repack-3ubuntu1) ... 481s Setting up libc6-dev:s390x (2.39-0ubuntu2) ... 481s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 481s Setting up libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 481s Setting up libsm6:s390x (2:1.2.3-1build2) ... 481s Setting up libicu-dev:s390x (74.2-1ubuntu1) ... 481s Setting up libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 481s Setting up libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 481s Setting up libbz2-dev:s390x (1.0.8-5ubuntu1) ... 481s Setting up fontconfig (2.15.0-1ubuntu1) ... 483s Regenerating fonts cache... done. 483s Setting up libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 483s Setting up libxft2:s390x (2.3.6-1) ... 483s Setting up libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 483s Setting up libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 483s Setting up libpcre2-dev:s390x (10.42-4ubuntu1) ... 483s Setting up cpp-13 (13.2.0-17ubuntu2) ... 483s Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 483s Setting up libtk8.6:s390x (8.6.13-2) ... 483s Setting up libpango-1.0-0:s390x (1.51.0+ds-4) ... 483s Setting up libreadline-dev:s390x (8.2-3) ... 483s Setting up libcairo2:s390x (1.18.0-1) ... 483s Setting up libhdf5-hl-cpp-100:s390x (1.10.10+repack-3ubuntu1) ... 483s Setting up gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 483s Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 483s Setting up g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 483s Setting up gcc-13 (13.2.0-17ubuntu2) ... 483s Setting up libhdf5-fortran-102:s390x (1.10.10+repack-3ubuntu1) ... 483s Setting up libxt6:s390x (1:1.2.1-1.1) ... 483s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 483s Setting up cpp (4:13.2.0-7ubuntu1) ... 483s Setting up gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 483s Setting up libhdf5-hl-fortran-100:s390x (1.10.10+repack-3ubuntu1) ... 483s Setting up libboost-dev:s390x (1.83.0.1ubuntu2) ... 483s Setting up libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 483s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 483s Setting up libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 483s Setting up g++-13 (13.2.0-17ubuntu2) ... 483s Setting up gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 483s Setting up libpng-dev:s390x (1.6.43-1) ... 483s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 483s Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 483s Setting up gcc (4:13.2.0-7ubuntu1) ... 483s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 483s Setting up r-base-core (4.3.2-1build1) ... 484s 484s Creating config file /etc/R/Renviron with new version 484s Setting up r-cran-crayon (1.5.2-1) ... 484s Setting up libhdf5-dev (1.10.10+repack-3ubuntu1) ... 484s update-alternatives: using /usr/lib/s390x-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/s390x-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 484s Setting up r-cran-labeling (0.4.3-1) ... 484s Setting up r-cran-sourcetools (0.1.7-1-1) ... 484s Setting up r-cran-futile.options (1.0.1-3build1) ... 484s Setting up r-cran-lattice (0.22-5-1) ... 484s Setting up r-cran-ps (1.7.6-1) ... 484s Setting up r-cran-nlme (3.1.164-1) ... 484s Setting up r-cran-farver (2.1.1-1) ... 484s Setting up r-cran-formatr (1.14-1) ... 484s Setting up r-cran-pbapply (1.7-2-1) ... 484s Setting up r-cran-xml (3.99-0.16.1-1) ... 484s Setting up g++ (4:13.2.0-7ubuntu1) ... 484s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 484s Setting up r-cran-viridislite (0.4.2-2) ... 484s Setting up r-cran-locfit (1.5-9.8-1) ... 484s Setting up build-essential (12.10ubuntu1) ... 484s Setting up r-cran-lazyeval (0.2.2-1build1) ... 484s Setting up r-cran-clipr (0.8.0-1) ... 484s Setting up r-cran-commonmark (1.9.1-1) ... 484s Setting up r-cran-r6 (2.5.1-1) ... 484s Setting up r-cran-pkgkitten (0.2.3-1) ... 484s Setting up r-cran-magrittr (2.0.3-1) ... 484s Setting up r-cran-rappdirs (0.3.3-1) ... 484s Setting up r-cran-filelock (1.0.3-1) ... 484s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 484s Setting up r-cran-littler (0.3.19-1) ... 484s Setting up r-cran-bh (1.84.0-1) ... 484s Setting up r-cran-fs (1.6.3+dfsg-1) ... 484s Setting up r-cran-rcpp (1.0.12-1) ... 484s Setting up r-cran-curl (5.2.0+dfsg-1) ... 484s Setting up r-cran-codetools (0.2-19-1) ... 484s Setting up r-cran-brio (1.1.4-1) ... 484s Setting up r-cran-diffobj (0.3.5-1) ... 484s Setting up r-bioc-biocgenerics (0.48.1-2) ... 484s Setting up r-cran-rlang (1.1.3-1) ... 484s Setting up r-cran-matrixstats (1.2.0-1) ... 484s Setting up littler (0.3.19-1) ... 484s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 484s Setting up r-cran-xfun (0.41+dfsg-1) ... 484s Setting up r-cran-sys (3.4.2-1) ... 484s Setting up r-bioc-tximportdata (1.30.0+ds-1) ... 484s Setting up r-cran-plogr (0.2.0-3build1) ... 484s Setting up r-cran-withr (2.5.0-1) ... 484s Setting up r-cran-processx (3.8.3-1) ... 484s Setting up r-cran-mime (0.12-1) ... 484s Setting up r-cran-praise (1.0.0-4build1) ... 484s Setting up r-cran-generics (0.1.3-1) ... 484s Setting up r-cran-base64enc (0.1-3-3) ... 484s Setting up r-cran-abind (1.4-5-2) ... 484s Setting up r-cran-digest (0.6.34-1) ... 484s Setting up r-cran-yaml (2.3.8-1) ... 484s Setting up r-cran-lambda.r (1.2.4-2build1) ... 484s Setting up r-bioc-protgenerics (1.34.0-1) ... 484s Setting up r-cran-evaluate (0.23-1) ... 484s Setting up r-cran-dbi (1.2.2-1) ... 484s Setting up r-cran-highr (0.10+dfsg-1) ... 484s Setting up r-cran-prettyunits (1.2.0-1) ... 484s Setting up r-cran-fansi (1.0.5-1) ... 484s Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 484s Setting up r-cran-mass (7.3-60.0.1-1) ... 484s Setting up r-cran-snow (1:0.4.4-2) ... 484s Setting up r-cran-glue (1.7.0-1) ... 484s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 484s Setting up r-cran-bit (4.0.5-1) ... 484s Setting up r-cran-xtable (1:1.8-4-2) ... 484s Setting up r-cran-cli (3.6.2-1) ... 484s Setting up gfortran (4:13.2.0-7ubuntu1) ... 484s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 484s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 484s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 484s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 484s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 484s Setting up r-cran-bitops (1.0-7-1) ... 484s Setting up r-bioc-biocversion (3.18.1-1) ... 484s Setting up r-cran-rprojroot (2.0.4-1) ... 484s Setting up r-cran-bit64 (4.0.5-1) ... 484s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 484s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 484s Setting up r-cran-askpass (1.2.0-1) ... 484s Setting up r-cran-fastmap (1.1.1-1) ... 484s Setting up r-cran-png (0.1-8-1) ... 484s Setting up r-bioc-biobase (2.62.0-1) ... 484s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 484s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 484s Setting up r-cran-utf8 (1.2.4-1) ... 484s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 484s Setting up r-cran-stringi (1.8.3-1) ... 484s Setting up r-cran-cpp11 (0.4.7-1) ... 484s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 484s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 484s Setting up r-cran-isoband (0.2.7-1) ... 484s Setting up r-cran-futile.logger (1.4.3-4build1) ... 484s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 484s Setting up r-cran-later (1.3.2+dfsg-1) ... 484s Setting up r-cran-matrix (1.6-5-1) ... 484s Setting up r-cran-tinytex (0.49-1) ... 484s Setting up r-bioc-tximport (1.30.0+dfsg-1) ... 484s Setting up r-cran-knitr (1.45+dfsg-1) ... 484s Setting up r-cran-mgcv (1.9-1-1) ... 484s Setting up r-cran-cachem (1.0.8-1) ... 484s Setting up r-cran-rcpparmadillo (0.12.8.1.0-1) ... 484s Setting up r-bioc-iranges (2.36.0-1) ... 484s Setting up r-cran-rjson (0.2.21-1) ... 484s Setting up r-cran-tzdb (0.4.0-2) ... 484s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 484s Setting up r-cran-restfulr (0.0.15-1) ... 484s Setting up r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 484s Setting up r-cran-vctrs (0.6.5-1) ... 484s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 484s Setting up r-cran-ellipsis (0.3.2-2) ... 484s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 484s Setting up r-base-dev (4.3.2-1build1) ... 484s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 484s Setting up r-cran-stringr (1.5.1-1) ... 484s Setting up r-bioc-biocparallel (1.36.0-1) ... 484s Setting up r-cran-callr (3.7.3-2) ... 484s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 484s Setting up r-cran-desc (1.4.3-1) ... 484s Setting up r-cran-xml2 (1.3.6-1) ... 484s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 484s Setting up r-cran-munsell (0.5.0-2build1) ... 484s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 484s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 484s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 484s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 484s Setting up r-cran-httr (1.4.7+dfsg-1) ... 484s Setting up r-cran-hms (1.1.3-1) ... 484s Setting up r-cran-scales (1.3.0-1) ... 484s Setting up r-cran-memoise (2.0.1-1) ... 484s Setting up r-cran-promises (1.2.1+dfsg-1) ... 484s Setting up r-cran-purrr (1.0.2-1) ... 484s Setting up r-cran-blob (1.2.4-1) ... 484s Setting up r-cran-htmltools (0.5.7-1) ... 484s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 484s Setting up r-bioc-xvector (0.42.0-1) ... 484s Setting up r-cran-pkgbuild (1.4.3-1) ... 484s Setting up r-cran-sass (0.4.8+dfsg-1) ... 484s Setting up r-cran-dplyr (1.1.4-1) ... 484s Setting up r-cran-rsqlite (2.3.4-1) ... 484s Setting up r-cran-progress (1.2.3-1) ... 484s Setting up r-cran-pheatmap (1.0.12-2build1) ... 484s Setting up r-cran-pkgload (1.3.4-1) ... 484s Setting up r-cran-vroom (1.6.5-1) ... 484s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 484s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 484s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 484s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 484s Setting up r-cran-rematch2 (2.1.2-2build1) ... 484s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 484s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 484s Setting up r-cran-fontawesome (0.5.2-1) ... 484s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 484s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 484s Setting up r-cran-readr (2.1.5-1) ... 484s Setting up r-cran-waldo (0.5.2-1build1) ... 484s Setting up r-cran-tidyr (1.3.1-1) ... 484s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 484s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 484s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 484s Setting up r-bioc-hdf5array (1.30.1-1) ... 484s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 484s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 484s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 484s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 484s Setting up r-bioc-annotationdbi (1.64.1-1) ... 484s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 484s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 484s Setting up r-cran-testthat (3.2.1-1) ... 484s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 484s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 484s Setting up r-bioc-beachmat (2.18.1+ds-1) ... 484s Setting up r-bioc-genomicalignments (1.38.2-1) ... 484s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 484s Setting up r-bioc-rtracklayer (1.62.0-1) ... 484s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 484s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 484s Setting up r-bioc-glmgampoi (1.14.3+dfsg-1) ... 484s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 484s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 484s Setting up r-cran-dt (0.31+dfsg-1) ... 484s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 484s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 484s Setting up r-bioc-tximeta (1.20.3+dfsg-1) ... 484s Setting up autopkgtest-satdep (0) ... 484s Processing triggers for man-db (2.12.0-3) ... 485s Processing triggers for install-info (7.1-3) ... 485s Processing triggers for libc-bin (2.39-0ubuntu2) ... 496s (Reading database ... 97338 files and directories currently installed.) 496s Removing autopkgtest-satdep (0) ... 497s autopkgtest [10:02:07]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 497s autopkgtest [10:02:07]: test pkg-r-autopkgtest: [----------------------- 497s Test: Try to load the R library DESeq2 497s 497s R version 4.3.2 (2023-10-31) -- "Eye Holes" 497s Copyright (C) 2023 The R Foundation for Statistical Computing 497s Platform: s390x-ibm-linux-gnu (64-bit) 497s 497s R is free software and comes with ABSOLUTELY NO WARRANTY. 497s You are welcome to redistribute it under certain conditions. 497s Type 'license()' or 'licence()' for distribution details. 497s 497s R is a collaborative project with many contributors. 497s Type 'contributors()' for more information and 497s 'citation()' on how to cite R or R packages in publications. 497s 497s Type 'demo()' for some demos, 'help()' for on-line help, or 497s 'help.start()' for an HTML browser interface to help. 497s Type 'q()' to quit R. 497s 497s > library('DESeq2') 497s Loading required package: S4Vectors 497s Loading required package: stats4 497s Loading required package: BiocGenerics 497s 497s Attaching package: ‘BiocGenerics’ 497s 497s The following objects are masked from ‘package:stats’: 497s 497s IQR, mad, sd, var, xtabs 497s 497s The following objects are masked from ‘package:base’: 497s 497s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 497s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 497s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 497s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 497s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 497s table, tapply, union, unique, unsplit, which.max, which.min 497s 498s 498s Attaching package: ‘S4Vectors’ 498s 498s The following object is masked from ‘package:utils’: 498s 498s findMatches 498s 498s The following objects are masked from ‘package:base’: 498s 498s expand.grid, I, unname 498s 498s Loading required package: IRanges 499s Loading required package: GenomicRanges 499s Loading required package: GenomeInfoDb 500s Loading required package: SummarizedExperiment 500s Loading required package: MatrixGenerics 500s Loading required package: matrixStats 500s 500s Attaching package: ‘MatrixGenerics’ 500s 500s The following objects are masked from ‘package:matrixStats’: 500s 500s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 500s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 500s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 500s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 500s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 500s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 500s colWeightedMeans, colWeightedMedians, colWeightedSds, 500s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 500s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 500s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 500s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 500s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 500s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 500s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 500s rowWeightedSds, rowWeightedVars 500s 500s Loading required package: Biobase 500s Welcome to Bioconductor 500s 500s Vignettes contain introductory material; view with 500s 'browseVignettes()'. To cite Bioconductor, see 500s 'citation("Biobase")', and for packages 'citation("pkgname")'. 500s 500s 500s Attaching package: ‘Biobase’ 500s 500s The following object is masked from ‘package:MatrixGenerics’: 500s 500s rowMedians 500s 500s The following objects are masked from ‘package:matrixStats’: 500s 500s anyMissing, rowMedians 500s 505s > 505s > 505s Other tests are currently unsupported! 505s They will be progressively added. 506s autopkgtest [10:02:16]: test pkg-r-autopkgtest: -----------------------] 506s pkg-r-autopkgtest PASS 506s autopkgtest [10:02:16]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 506s autopkgtest [10:02:16]: @@@@@@@@@@@@@@@@@@@@ summary 506s pkg-r-autopkgtest PASS 556s Creating nova instance adt-noble-s390x-r-bioc-deseq2-20240312-095350-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240309.img (UUID 15f62ec0-c004-41c2-ab66-72a4ef6796cc)...