0s autopkgtest [19:02:25]: starting date and time: 2024-03-16 19:02:25+0000 0s autopkgtest [19:02:25]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [19:02:25]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vrmhupfk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-rcurl,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-biocviews --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-rcurl/1.98-1.14+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-6.secgroup --name adt-noble-s390x-r-bioc-biocviews-20240316-190225-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 62s autopkgtest [19:03:27]: testbed dpkg architecture: s390x 63s autopkgtest [19:03:28]: testbed apt version: 2.7.12 63s autopkgtest [19:03:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 64s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 64s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 64s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 64s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 64s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [632 kB] 64s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 64s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 64s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 64s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3752 kB] 64s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 64s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB] 64s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 66s Fetched 8760 kB in 2s (3985 kB/s) 66s Reading package lists... 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Calculating upgrade... 69s The following packages will be REMOVED: 69s libssl3 69s The following NEW packages will be installed: 69s libssl3t64 69s The following packages have been kept back: 69s curl 69s The following packages will be upgraded: 69s openssl ubuntu-minimal ubuntu-standard 69s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 69s Need to get 2680 kB of archives. 69s After this operation, 23.6 kB of additional disk space will be used. 69s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 70s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 70s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536 [10.7 kB] 70s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536 [10.7 kB] 70s Fetched 2680 kB in 1s (3982 kB/s) 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 70s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 70s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 70s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 70s wget depends on libssl3 (>= 3.0.0). 70s tnftp depends on libssl3 (>= 3.0.0). 70s tcpdump depends on libssl3 (>= 3.0.0). 70s systemd-resolved depends on libssl3 (>= 3.0.0). 70s systemd depends on libssl3 (>= 3.0.0). 70s sudo depends on libssl3 (>= 3.0.0). 70s s390-tools depends on libssl3 (>= 3.0.0). 70s rsync depends on libssl3 (>= 3.0.0). 70s python3-cryptography depends on libssl3 (>= 3.0.0). 70s openssh-server depends on libssl3 (>= 3.0.10). 70s openssh-client depends on libssl3 (>= 3.0.10). 70s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 70s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 70s libssh-4:s390x depends on libssl3 (>= 3.0.0). 70s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 70s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 70s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 70s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 70s libnvme1 depends on libssl3 (>= 3.0.0). 70s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 70s libkmod2:s390x depends on libssl3 (>= 3.0.0). 70s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 70s libcurl4:s390x depends on libssl3 (>= 3.0.0). 70s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 70s kmod depends on libssl3 (>= 3.0.0). 70s dhcpcd-base depends on libssl3 (>= 3.0.0). 70s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 70s 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 70s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 70s Selecting previously unselected package libssl3t64:s390x. 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 70s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 70s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 70s Preparing to unpack .../ubuntu-minimal_1.536_s390x.deb ... 70s Unpacking ubuntu-minimal (1.536) over (1.535) ... 71s Preparing to unpack .../ubuntu-standard_1.536_s390x.deb ... 71s Unpacking ubuntu-standard (1.536) over (1.535) ... 71s Setting up ubuntu-minimal (1.536) ... 71s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 71s Setting up ubuntu-standard (1.536) ... 71s Setting up openssl (3.0.13-0ubuntu1) ... 71s Processing triggers for man-db (2.12.0-3) ... 71s Processing triggers for libc-bin (2.39-0ubuntu2) ... 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 72s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 72s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 72s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 72s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 72s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 73s Reading package lists... 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 74s Calculating upgrade... 74s The following packages have been kept back: 74s curl 74s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 77s autopkgtest [19:03:42]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 77s autopkgtest [19:03:42]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biocviews 79s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocviews 1.70.0-1 (dsc) [2187 B] 79s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocviews 1.70.0-1 (tar) [518 kB] 79s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocviews 1.70.0-1 (diff) [5836 B] 79s gpgv: Signature made Thu Nov 30 09:24:43 2023 UTC 79s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 79s gpgv: issuer "tille@debian.org" 79s gpgv: Can't check signature: No public key 79s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biocviews_1.70.0-1.dsc: no acceptable signature found 79s autopkgtest [19:03:44]: testing package r-bioc-biocviews version 1.70.0-1 79s autopkgtest [19:03:44]: build not needed 82s autopkgtest [19:03:47]: test pkg-r-autopkgtest: preparing testbed 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s Starting pkgProblemResolver with broken count: 0 84s Starting 2 pkgProblemResolver with broken count: 0 84s Done 84s The following additional packages will be installed: 84s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu curl 84s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 84s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 84s g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 84s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13 84s gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 84s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 84s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 84s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 84s libfontconfig1 libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 84s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl 84s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 84s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 84s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 84s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 84s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 84s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 84s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 84s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 84s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 84s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 84s libpng-dev libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 84s libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 84s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 84s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 84s libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 84s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 84s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 84s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocviews 84s r-bioc-graph r-bioc-rbgl r-cran-base64enc r-cran-bh r-cran-biocmanager 84s r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 84s r-cran-commonmark r-cran-crayon r-cran-digest r-cran-ellipsis 84s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue 84s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite 84s r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr 84s r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 84s r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rmarkdown 84s r-cran-runit r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi 84s r-cran-stringr r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun 84s r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 84s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 84s x11-common xdg-utils zip zlib1g-dev 84s Suggested packages: 84s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 84s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 84s gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib 84s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 84s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 84s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 84s libboost-context1.83-dev libboost-contract1.83-dev 84s libboost-coroutine1.83-dev libboost-date-time1.83-dev 84s libboost-exception1.83-dev libboost-fiber1.83-dev 84s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 84s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 84s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 84s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 84s libboost-numpy1.83-dev libboost-program-options1.83-dev 84s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 84s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 84s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 84s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 84s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 84s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 84s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 84s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 84s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 84s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 84s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 84s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 84s r-bioc-all r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges 84s r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi 84s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-sparsem r-cran-cluster 84s r-cran-rstudioapi r-cran-markdown r-cran-testthat r-cran-getopt r-cran-covr 84s r-cran-httr r-cran-roxygen2 r-cran-inline r-cran-callr r-cran-plm r-cran-zoo 84s r-cran-survival debhelper ghostscript gv | postscript-viewer perl-tk xpdf 84s | pdf-viewer xzdec hintview texlive-latex-base-doc wp2latex 84s Recommended packages: 84s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 84s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-testthat 84s r-cran-curl r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi 84s r-cran-miniui r-cran-rsconnect r-cran-tibble r-cran-testit r-cran-tufte 84s r-cran-xml2 r-cran-webshot r-cran-ggplot2 r-cran-thematic r-cran-callr 84s r-cran-covr r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot 84s r-cran-whoami r-cran-lattice r-cran-dplyr r-cran-rsvg r-cran-pillar 84s r-cran-spelling r-cran-dbi r-cran-rsqlite r-cran-waldo r-cran-cairo 84s r-cran-markdown r-cran-ragg r-cran-httr r-cran-r.rsp r-cran-sf 84s r-cran-codetools r-cran-formatr r-cran-gridsvg r-cran-jpeg r-cran-magick 84s r-cran-png r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 84s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-future r-cran-purrr 84s r-cran-usethis r-cran-dygraphs r-cran-bit64 r-cran-generics r-cran-pkgdown 84s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 84s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 84s The following packages will be REMOVED: 84s libcurl4 libpsl5 84s The following NEW packages will be installed: 84s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 84s cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config 84s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 84s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 84s g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu 84s gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu 84s gfortran-s390x-linux-gnu icu-devtools javascript-common libasan8 libatomic1 84s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 84s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 84s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgcc-13-dev 84s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 84s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 84s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 84s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 84s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 84s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 84s libjs-popper.js libjs-prettify libjs-sifter.js 84s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 84s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 84s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 84s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 84s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 84s libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 84s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 84s libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 84s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 84s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 84s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 84s r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle 84s r-bioc-biocviews r-bioc-graph r-bioc-rbgl r-cran-base64enc r-cran-bh 84s r-cran-biocmanager r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem 84s r-cran-cli r-cran-commonmark r-cran-crayon r-cran-digest r-cran-ellipsis 84s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue 84s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite 84s r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr 84s r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 84s r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rmarkdown 84s r-cran-runit r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi 84s r-cran-stringr r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun 84s r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 84s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 84s x11-common xdg-utils zip zlib1g-dev 84s The following packages will be upgraded: 84s curl 84s 1 upgraded, 213 newly installed, 2 to remove and 0 not upgraded. 84s Need to get 346 MB/346 MB of archives. 84s After this operation, 1267 MB of additional disk space will be used. 84s Get:1 /tmp/autopkgtest.jRmXkf/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [756 B] 84s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu7 [227 kB] 85s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpsl5t64 s390x 0.21.2-1.1 [57.6 kB] 85s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu7 [364 kB] 85s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 85s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 85s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 85s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 85s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 85s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 85s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 85s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 85s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 85s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 85s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-17ubuntu2 [1026 B] 85s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 85s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 86s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 86s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 86s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 86s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 86s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 86s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 86s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 86s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 86s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 86s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 86s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 86s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 86s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [11.3 MB] 86s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-17ubuntu2 [14.4 kB] 86s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 86s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 86s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 86s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] 86s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 86s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 86s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 87s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 87s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 87s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 87s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 87s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 87s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 87s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 87s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 87s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 87s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 87s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 87s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B] 87s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B] 87s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 87s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x javascript-common all 11+nmu1 [5936 B] 87s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 87s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x liblatex-tounicode-perl all 0.54-2 [29.0 kB] 87s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 87s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 87s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB] 87s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 87s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] 87s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] 88s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 88s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 88s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 88s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 88s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 88s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 88s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 88s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 88s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 88s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 88s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 88s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 88s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 88s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] 88s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 88s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 88s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 88s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 88s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 88s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 88s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 88s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 88s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 88s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 88s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 88s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 88s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 88s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 88s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 88s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 88s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 88s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 88s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libkpathsea6 s390x 2023.20230311.66589-9 [66.4 kB] 88s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 88s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB] 88s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 88s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB] 88s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 88s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 88s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 88s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 89s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 89s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 89s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 89s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 89s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 89s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B] 89s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB] 89s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] 89s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 89s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-1 [277 kB] 89s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] 89s Get:114 http://ftpmaster.internal/ubuntu noble/main s390x libptexenc1 s390x 2023.20230311.66589-9 [41.6 kB] 89s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-3 [187 kB] 89s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 89s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 89s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libsynctex2 s390x 2023.20230311.66589-9 [65.0 kB] 89s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 89s Get:120 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 89s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libtexlua53-5 s390x 2023.20230311.66589-9 [132 kB] 89s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 89s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 89s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 89s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 89s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 89s Get:127 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 89s Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 89s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libxmu6 s390x 2:1.1.3-3 [49.3 kB] 89s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 89s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libxaw7 s390x 2:1.0.14-1 [186 kB] 89s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 89s Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x libzzip-0-13 s390x 0.13.72+dfsg.1-1.1 [26.1 kB] 89s Get:134 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 89s Get:135 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 89s Get:136 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 89s Get:137 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 90s Get:138 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 90s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x littler all 0.3.19-1 [2472 B] 90s Get:140 http://ftpmaster.internal/ubuntu noble/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 90s Get:141 http://ftpmaster.internal/ubuntu noble/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 90s Get:142 http://ftpmaster.internal/ubuntu noble/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 90s Get:143 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc-data all 3.1.3-1 [92.4 kB] 90s Get:144 http://ftpmaster.internal/ubuntu noble/universe s390x pandoc s390x 3.1.3+ds-2 [41.5 MB] 92s Get:145 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] 92s Get:146 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] 92s Get:147 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B] 92s Get:148 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.4.5-0.3 [215 kB] 92s Get:149 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.2-1build1 [4336 B] 92s Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 92s Get:151 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB] 92s Get:152 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biobase s390x 2.62.0-1 [2137 kB] 92s Get:153 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 92s Get:154 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-digest s390x 0.6.34-1 [187 kB] 92s Get:155 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 92s Get:156 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ellipsis s390x 0.3.2-2 [35.4 kB] 92s Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fastmap s390x 1.1.1-1 [69.1 kB] 92s Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-htmltools s390x 0.5.7-1 [368 kB] 92s Get:159 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB] 92s Get:160 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xfun s390x 0.41+dfsg-1 [415 kB] 92s Get:161 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-highr all 0.10+dfsg-1 [38.3 kB] 92s Get:162 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-yaml s390x 2.3.8-1 [127 kB] 92s Get:163 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 92s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-knitr all 1.45+dfsg-1 [917 kB] 92s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cachem s390x 1.0.8-1 [72.1 kB] 92s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 92s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB] 92s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 92s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 92s Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 92s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 92s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mime s390x 0.12-1 [35.7 kB] 92s Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fs s390x 1.6.3+dfsg-1 [229 kB] 92s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 92s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 92s Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sass s390x 0.4.8+dfsg-1 [1025 kB] 93s Get:177 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 93s Get:178 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 93s Get:179 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 93s Get:180 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringi s390x 1.8.3-1 [885 kB] 93s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 93s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 93s Get:183 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tinytex all 0.49-1 [141 kB] 93s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 93s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 93s Get:186 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 93s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-later s390x 1.3.2+dfsg-1 [126 kB] 93s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-promises s390x 1.2.1+dfsg-1 [285 kB] 93s Get:189 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-httpuv s390x 1.6.14+dfsg-1 [519 kB] 93s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 93s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 93s Get:192 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-crayon all 1.5.2-1 [164 kB] 93s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 93s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-commonmark s390x 1.9.1-1 [142 kB] 93s Get:195 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 93s Get:196 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 93s Get:197 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 93s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 93s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 93s Get:200 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] 93s Get:201 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] 93s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-binaries s390x 2023.20230311.66589-9 [9353 kB] 94s Get:203 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] 95s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] 95s Get:205 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 99s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 99s Get:207 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-graph s390x 1.80.0-1 [1290 kB] 99s Get:208 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 99s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-rbgl s390x 1.78.0+dfsg-1 [591 kB] 99s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-xml s390x 3.99-0.16.1-1 [1735 kB] 99s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 99s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-cran-rcurl s390x 1.98-1.14+dfsg-1build1 [794 kB] 99s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-runit all 0.4.32-3 [283 kB] 99s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocviews all 1.70.0-1 [658 kB] 99s Preconfiguring packages ... 100s Fetched 346 MB in 14s (23.9 MB/s) 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 100s Preparing to unpack .../curl_8.5.0-2ubuntu7_s390x.deb ... 100s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 100s dpkg: libpsl5:s390x: dependency problems, but removing anyway as you requested: 100s wget depends on libpsl5 (>= 0.16.0). 100s libcurl4:s390x depends on libpsl5 (>= 0.16.0). 100s libcurl3-gnutls:s390x depends on libpsl5 (>= 0.16.0). 100s 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 100s Removing libpsl5:s390x (0.21.2-1build1) ... 100s Selecting previously unselected package libpsl5t64:s390x. 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52168 files and directories currently installed.) 100s Preparing to unpack .../libpsl5t64_0.21.2-1.1_s390x.deb ... 100s Unpacking libpsl5t64:s390x (0.21.2-1.1) ... 100s dpkg: libcurl4:s390x: dependency problems, but removing anyway as you requested: 100s s390-tools depends on libcurl4 (>= 7.16.2). 100s 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52174 files and directories currently installed.) 100s Removing libcurl4:s390x (8.5.0-2ubuntu2) ... 100s Selecting previously unselected package libcurl4t64:s390x. 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52169 files and directories currently installed.) 100s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_s390x.deb ... 100s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu7) ... 100s Selecting previously unselected package libc-dev-bin. 100s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 100s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 100s Selecting previously unselected package linux-libc-dev:s390x. 100s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_s390x.deb ... 100s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 100s Selecting previously unselected package libcrypt-dev:s390x. 100s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 100s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 100s Selecting previously unselected package libtirpc-dev:s390x. 100s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 100s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 100s Selecting previously unselected package libnsl-dev:s390x. 100s Preparing to unpack .../005-libnsl-dev_1.3.0-3_s390x.deb ... 100s Unpacking libnsl-dev:s390x (1.3.0-3) ... 100s Selecting previously unselected package rpcsvc-proto. 100s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 100s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 100s Selecting previously unselected package libc6-dev:s390x. 100s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_s390x.deb ... 100s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 100s Selecting previously unselected package libisl23:s390x. 100s Preparing to unpack .../008-libisl23_0.26-3_s390x.deb ... 100s Unpacking libisl23:s390x (0.26-3) ... 100s Selecting previously unselected package libmpc3:s390x. 100s Preparing to unpack .../009-libmpc3_1.3.1-1_s390x.deb ... 100s Unpacking libmpc3:s390x (1.3.1-1) ... 100s Selecting previously unselected package cpp-13-s390x-linux-gnu. 100s Preparing to unpack .../010-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 100s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 100s Selecting previously unselected package cpp-13. 100s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_s390x.deb ... 100s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 100s Selecting previously unselected package cpp-s390x-linux-gnu. 100s Preparing to unpack .../012-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 100s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 100s Selecting previously unselected package cpp. 100s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 100s Unpacking cpp (4:13.2.0-7ubuntu1) ... 100s Selecting previously unselected package libcc1-0:s390x. 100s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 100s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 100s Selecting previously unselected package libgomp1:s390x. 100s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 100s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 100s Selecting previously unselected package libitm1:s390x. 100s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_s390x.deb ... 100s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 100s Selecting previously unselected package libatomic1:s390x. 100s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 100s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 100s Selecting previously unselected package libasan8:s390x. 100s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_s390x.deb ... 100s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 101s Selecting previously unselected package libubsan1:s390x. 101s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 101s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 101s Selecting previously unselected package libgcc-13-dev:s390x. 101s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 101s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 101s Selecting previously unselected package gcc-13-s390x-linux-gnu. 101s Preparing to unpack .../021-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 101s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 101s Selecting previously unselected package gcc-13. 101s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 101s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 101s Selecting previously unselected package gcc-s390x-linux-gnu. 101s Preparing to unpack .../023-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 101s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 101s Selecting previously unselected package gcc. 101s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 101s Unpacking gcc (4:13.2.0-7ubuntu1) ... 101s Selecting previously unselected package libstdc++-13-dev:s390x. 101s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 101s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 101s Selecting previously unselected package g++-13-s390x-linux-gnu. 101s Preparing to unpack .../026-g++-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 101s Unpacking g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 102s Selecting previously unselected package g++-13. 102s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_s390x.deb ... 102s Unpacking g++-13 (13.2.0-17ubuntu2) ... 102s Selecting previously unselected package g++-s390x-linux-gnu. 102s Preparing to unpack .../028-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 102s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 102s Selecting previously unselected package g++. 102s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 102s Unpacking g++ (4:13.2.0-7ubuntu1) ... 102s Selecting previously unselected package build-essential. 102s Preparing to unpack .../030-build-essential_12.10ubuntu1_s390x.deb ... 102s Unpacking build-essential (12.10ubuntu1) ... 102s Selecting previously unselected package dctrl-tools. 102s Preparing to unpack .../031-dctrl-tools_2.24-3build2_s390x.deb ... 102s Unpacking dctrl-tools (2.24-3build2) ... 102s Selecting previously unselected package libfreetype6:s390x. 102s Preparing to unpack .../032-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 102s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 102s Selecting previously unselected package fonts-dejavu-mono. 102s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 102s Unpacking fonts-dejavu-mono (2.37-8) ... 102s Selecting previously unselected package fonts-dejavu-core. 102s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 102s Unpacking fonts-dejavu-core (2.37-8) ... 102s Selecting previously unselected package fontconfig-config. 102s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 102s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 102s Selecting previously unselected package libfontconfig1:s390x. 102s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 102s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 102s Selecting previously unselected package fontconfig. 102s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 102s Unpacking fontconfig (2.15.0-1ubuntu1) ... 102s Selecting previously unselected package fonts-font-awesome. 102s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 102s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 102s Selecting previously unselected package fonts-glyphicons-halflings. 102s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 102s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 102s Selecting previously unselected package fonts-lmodern. 102s Preparing to unpack .../040-fonts-lmodern_2.005-1_all.deb ... 102s Unpacking fonts-lmodern (2.005-1) ... 102s Selecting previously unselected package fonts-mathjax. 102s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 102s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 102s Selecting previously unselected package libgfortran5:s390x. 102s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 102s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 102s Selecting previously unselected package libgfortran-13-dev:s390x. 102s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 102s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 102s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 102s Preparing to unpack .../044-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 102s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 103s Selecting previously unselected package gfortran-13. 103s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 103s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 103s Selecting previously unselected package gfortran-s390x-linux-gnu. 103s Preparing to unpack .../046-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 103s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 103s Selecting previously unselected package gfortran. 103s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ... 103s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 103s Selecting previously unselected package icu-devtools. 103s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_s390x.deb ... 103s Unpacking icu-devtools (74.2-1ubuntu1) ... 103s Selecting previously unselected package javascript-common. 103s Preparing to unpack .../049-javascript-common_11+nmu1_all.deb ... 103s Unpacking javascript-common (11+nmu1) ... 103s Selecting previously unselected package libio-string-perl. 103s Preparing to unpack .../050-libio-string-perl_1.08-4_all.deb ... 103s Unpacking libio-string-perl (1.08-4) ... 103s Selecting previously unselected package liblatex-tounicode-perl. 103s Preparing to unpack .../051-liblatex-tounicode-perl_0.54-2_all.deb ... 103s Unpacking liblatex-tounicode-perl (0.54-2) ... 103s Selecting previously unselected package libbibtex-parser-perl. 103s Preparing to unpack .../052-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 103s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 103s Selecting previously unselected package libblas3:s390x. 103s Preparing to unpack .../053-libblas3_3.12.0-3_s390x.deb ... 103s Unpacking libblas3:s390x (3.12.0-3) ... 103s Selecting previously unselected package libblas-dev:s390x. 103s Preparing to unpack .../054-libblas-dev_3.12.0-3_s390x.deb ... 103s Unpacking libblas-dev:s390x (3.12.0-3) ... 103s Selecting previously unselected package libboost1.83-dev:s390x. 103s Preparing to unpack .../055-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 103s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 105s Selecting previously unselected package libboost-dev:s390x. 105s Preparing to unpack .../056-libboost-dev_1.83.0.1ubuntu2_s390x.deb ... 105s Unpacking libboost-dev:s390x (1.83.0.1ubuntu2) ... 105s Selecting previously unselected package libbz2-dev:s390x. 105s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ... 105s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ... 105s Selecting previously unselected package libpixman-1-0:s390x. 105s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_s390x.deb ... 105s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 105s Selecting previously unselected package libxcb-render0:s390x. 105s Preparing to unpack .../059-libxcb-render0_1.15-1_s390x.deb ... 105s Unpacking libxcb-render0:s390x (1.15-1) ... 105s Selecting previously unselected package libxcb-shm0:s390x. 105s Preparing to unpack .../060-libxcb-shm0_1.15-1_s390x.deb ... 105s Unpacking libxcb-shm0:s390x (1.15-1) ... 105s Selecting previously unselected package libxrender1:s390x. 105s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 105s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 105s Selecting previously unselected package libcairo2:s390x. 105s Preparing to unpack .../062-libcairo2_1.18.0-1_s390x.deb ... 105s Unpacking libcairo2:s390x (1.18.0-1) ... 105s Selecting previously unselected package libdatrie1:s390x. 105s Preparing to unpack .../063-libdatrie1_0.2.13-3_s390x.deb ... 105s Unpacking libdatrie1:s390x (0.2.13-3) ... 105s Selecting previously unselected package libdeflate0:s390x. 105s Preparing to unpack .../064-libdeflate0_1.19-1_s390x.deb ... 105s Unpacking libdeflate0:s390x (1.19-1) ... 105s Selecting previously unselected package libgraphite2-3:s390x. 105s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_s390x.deb ... 105s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 105s Selecting previously unselected package libharfbuzz0b:s390x. 105s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_s390x.deb ... 105s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 105s Selecting previously unselected package x11-common. 105s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 105s Unpacking x11-common (1:7.7+23ubuntu2) ... 105s Selecting previously unselected package libice6:s390x. 105s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_s390x.deb ... 105s Unpacking libice6:s390x (2:1.0.10-1build2) ... 105s Selecting previously unselected package libicu-dev:s390x. 105s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_s390x.deb ... 105s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 106s Selecting previously unselected package libjpeg-turbo8:s390x. 106s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 106s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 106s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 106s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ... 106s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 106s Selecting previously unselected package libjpeg8:s390x. 106s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_s390x.deb ... 106s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 106s Selecting previously unselected package libjpeg8-dev:s390x. 106s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 106s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 106s Selecting previously unselected package libjpeg-dev:s390x. 106s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 106s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 106s Selecting previously unselected package libjs-bootstrap. 106s Preparing to unpack .../075-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 106s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 106s Selecting previously unselected package libjs-popper.js. 106s Preparing to unpack .../076-libjs-popper.js_1.16.1+ds-6_all.deb ... 106s Unpacking libjs-popper.js (1.16.1+ds-6) ... 106s Selecting previously unselected package libjs-bootstrap4. 106s Preparing to unpack .../077-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 106s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 106s Selecting previously unselected package libjs-d3. 106s Preparing to unpack .../078-libjs-d3_3.5.17-4_all.deb ... 106s Unpacking libjs-d3 (3.5.17-4) ... 106s Selecting previously unselected package libjs-es5-shim. 106s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ... 106s Unpacking libjs-es5-shim (4.6.7-2) ... 106s Selecting previously unselected package libjs-highlight.js. 106s Preparing to unpack .../080-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 106s 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.../106-libpkgconf3_1.8.1-2_s390x.deb ... 107s Unpacking libpkgconf3:s390x (1.8.1-2) ... 107s Selecting previously unselected package zlib1g-dev:s390x. 107s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 107s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 107s Selecting previously unselected package libpng-dev:s390x. 107s Preparing to unpack .../108-libpng-dev_1.6.43-1_s390x.deb ... 107s Unpacking libpng-dev:s390x (1.6.43-1) ... 107s Selecting previously unselected package libpotrace0:s390x. 107s Preparing to unpack .../109-libpotrace0_1.16-2_s390x.deb ... 107s Unpacking libpotrace0:s390x (1.16-2) ... 107s Selecting previously unselected package libptexenc1:s390x. 107s Preparing to unpack .../110-libptexenc1_2023.20230311.66589-9_s390x.deb ... 107s Unpacking libptexenc1:s390x (2023.20230311.66589-9) ... 107s Selecting previously unselected package libreadline-dev:s390x. 107s Preparing to unpack .../111-libreadline-dev_8.2-3_s390x.deb ... 107s Unpacking libreadline-dev:s390x (8.2-3) ... 107s Selecting previously unselected package libsharpyuv0:s390x. 107s Preparing to unpack .../112-libsharpyuv0_1.3.2-0.4_s390x.deb ... 107s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 107s Selecting previously unselected package libsm6:s390x. 107s Preparing to unpack .../113-libsm6_2%3a1.2.3-1build2_s390x.deb ... 107s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 107s Selecting previously unselected package libsynctex2:s390x. 107s Preparing to unpack .../114-libsynctex2_2023.20230311.66589-9_s390x.deb ... 107s Unpacking libsynctex2:s390x (2023.20230311.66589-9) ... 107s Selecting previously unselected package libtcl8.6:s390x. 107s Preparing to unpack .../115-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 107s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 107s Selecting previously unselected package libteckit0:s390x. 107s Preparing to unpack .../116-libteckit0_2.5.12+ds1-1_s390x.deb ... 107s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 107s Selecting previously unselected package libtexlua53-5:s390x. 107s Preparing to unpack .../117-libtexlua53-5_2023.20230311.66589-9_s390x.deb ... 107s Unpacking libtexlua53-5:s390x (2023.20230311.66589-9) ... 107s Selecting previously unselected package libjbig0:s390x. 107s Preparing to unpack .../118-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 107s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 107s Selecting previously unselected package libwebp7:s390x. 107s Preparing to unpack .../119-libwebp7_1.3.2-0.4_s390x.deb ... 107s Unpacking libwebp7:s390x (1.3.2-0.4) ... 107s Selecting previously unselected package libtiff6:s390x. 107s Preparing to unpack .../120-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 107s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 107s Selecting previously unselected package libxft2:s390x. 107s Preparing to unpack .../121-libxft2_2.3.6-1_s390x.deb ... 107s Unpacking libxft2:s390x (2.3.6-1) ... 107s Selecting previously unselected package libxss1:s390x. 107s Preparing to unpack .../122-libxss1_1%3a1.2.3-1build2_s390x.deb ... 107s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 107s Selecting previously unselected package libtk8.6:s390x. 107s Preparing to unpack .../123-libtk8.6_8.6.13-2_s390x.deb ... 107s Unpacking libtk8.6:s390x (8.6.13-2) ... 107s Selecting previously unselected package libxt6:s390x. 107s Preparing to unpack .../124-libxt6_1%3a1.2.1-1.1_s390x.deb ... 107s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 107s Selecting previously unselected package libxmu6:s390x. 107s Preparing to unpack .../125-libxmu6_2%3a1.1.3-3_s390x.deb ... 107s Unpacking libxmu6:s390x (2:1.1.3-3) ... 107s Selecting previously unselected package libxpm4:s390x. 107s Preparing to unpack .../126-libxpm4_1%3a3.5.17-1_s390x.deb ... 107s Unpacking libxpm4:s390x (1:3.5.17-1) ... 107s Selecting previously unselected package libxaw7:s390x. 107s Preparing to unpack .../127-libxaw7_2%3a1.0.14-1_s390x.deb ... 107s Unpacking libxaw7:s390x (2:1.0.14-1) ... 107s Selecting previously unselected package libxi6:s390x. 107s Preparing to unpack .../128-libxi6_2%3a1.8.1-1_s390x.deb ... 107s Unpacking libxi6:s390x (2:1.8.1-1) ... 107s Selecting previously unselected package libzzip-0-13:s390x. 107s Preparing to unpack .../129-libzzip-0-13_0.13.72+dfsg.1-1.1_s390x.deb ... 107s Unpacking libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 107s Selecting previously unselected package zip. 107s Preparing to unpack .../130-zip_3.0-13_s390x.deb ... 107s Unpacking zip (3.0-13) ... 107s Selecting previously unselected package unzip. 107s Preparing to unpack .../131-unzip_6.0-28ubuntu3_s390x.deb ... 107s Unpacking unzip (6.0-28ubuntu3) ... 107s Selecting previously unselected package xdg-utils. 107s Preparing to unpack .../132-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 107s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 107s Selecting previously unselected package r-base-core. 107s Preparing to unpack .../133-r-base-core_4.3.2-1build1_s390x.deb ... 107s Unpacking r-base-core (4.3.2-1build1) ... 108s Selecting previously unselected package r-cran-littler. 108s Preparing to unpack .../134-r-cran-littler_0.3.19-1_s390x.deb ... 108s Unpacking r-cran-littler (0.3.19-1) ... 108s Selecting previously unselected package littler. 108s Preparing to unpack .../135-littler_0.3.19-1_all.deb ... 108s Unpacking littler (0.3.19-1) ... 108s Selecting previously unselected package node-bootstrap-sass. 108s Preparing to unpack .../136-node-bootstrap-sass_3.4.3-2_all.deb ... 108s Unpacking node-bootstrap-sass (3.4.3-2) ... 108s Selecting previously unselected package node-html5shiv. 108s Preparing to unpack .../137-node-html5shiv_3.7.3+dfsg-5_all.deb ... 108s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 108s Selecting previously unselected package node-normalize.css. 108s Preparing to unpack .../138-node-normalize.css_8.0.1-5_all.deb ... 108s Unpacking node-normalize.css (8.0.1-5) ... 108s Selecting previously unselected package pandoc-data. 108s Preparing to unpack .../139-pandoc-data_3.1.3-1_all.deb ... 108s Unpacking pandoc-data (3.1.3-1) ... 108s Selecting previously unselected package pandoc. 108s Preparing to unpack .../140-pandoc_3.1.3+ds-2_s390x.deb ... 108s Unpacking pandoc (3.1.3+ds-2) ... 109s Selecting previously unselected package pkgconf-bin. 109s Preparing to unpack .../141-pkgconf-bin_1.8.1-2_s390x.deb ... 109s Unpacking pkgconf-bin (1.8.1-2) ... 110s Selecting previously unselected package pkgconf:s390x. 110s Preparing to unpack .../142-pkgconf_1.8.1-2_s390x.deb ... 110s Unpacking pkgconf:s390x (1.8.1-2) ... 110s Selecting previously unselected package pkg-config:s390x. 110s Preparing to unpack .../143-pkg-config_1.8.1-2_s390x.deb ... 110s Unpacking pkg-config:s390x (1.8.1-2) ... 110s Selecting previously unselected package liblzma-dev:s390x. 110s Preparing to unpack .../144-liblzma-dev_5.4.5-0.3_s390x.deb ... 110s Unpacking liblzma-dev:s390x (5.4.5-0.3) ... 110s Selecting previously unselected package r-base-dev. 110s Preparing to unpack .../145-r-base-dev_4.3.2-1build1_all.deb ... 110s Unpacking r-base-dev (4.3.2-1build1) ... 110s Selecting previously unselected package pkg-r-autopkgtest. 110s Preparing to unpack .../146-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 110s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 110s Selecting previously unselected package r-bioc-biocgenerics. 110s Preparing to unpack .../147-r-bioc-biocgenerics_0.48.1-2_all.deb ... 110s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 110s Selecting previously unselected package r-bioc-biobase. 110s Preparing to unpack .../148-r-bioc-biobase_2.62.0-1_s390x.deb ... 110s Unpacking r-bioc-biobase (2.62.0-1) ... 110s Selecting previously unselected package r-cran-base64enc. 110s Preparing to unpack .../149-r-cran-base64enc_0.1-3-3_s390x.deb ... 110s Unpacking r-cran-base64enc (0.1-3-3) ... 110s Selecting previously unselected package r-cran-digest. 110s Preparing to unpack .../150-r-cran-digest_0.6.34-1_s390x.deb ... 110s Unpacking r-cran-digest (0.6.34-1) ... 110s Selecting previously unselected package r-cran-rlang. 110s Preparing to unpack .../151-r-cran-rlang_1.1.3-1_s390x.deb ... 110s Unpacking r-cran-rlang (1.1.3-1) ... 110s Selecting previously unselected package r-cran-ellipsis. 110s Preparing to unpack .../152-r-cran-ellipsis_0.3.2-2_s390x.deb ... 110s Unpacking r-cran-ellipsis (0.3.2-2) ... 110s Selecting previously unselected package r-cran-fastmap. 110s Preparing to unpack .../153-r-cran-fastmap_1.1.1-1_s390x.deb ... 110s Unpacking r-cran-fastmap (1.1.1-1) ... 110s Selecting previously unselected package r-cran-htmltools. 110s Preparing to unpack .../154-r-cran-htmltools_0.5.7-1_s390x.deb ... 110s Unpacking r-cran-htmltools (0.5.7-1) ... 110s Selecting previously unselected package r-cran-evaluate. 110s Preparing to unpack .../155-r-cran-evaluate_0.23-1_all.deb ... 110s Unpacking r-cran-evaluate (0.23-1) ... 110s Selecting previously unselected package r-cran-xfun. 110s Preparing to unpack .../156-r-cran-xfun_0.41+dfsg-1_s390x.deb ... 110s Unpacking r-cran-xfun (0.41+dfsg-1) ... 110s Selecting previously unselected package r-cran-highr. 110s Preparing to unpack .../157-r-cran-highr_0.10+dfsg-1_all.deb ... 110s Unpacking r-cran-highr (0.10+dfsg-1) ... 110s Selecting previously unselected package r-cran-yaml. 110s Preparing to unpack .../158-r-cran-yaml_2.3.8-1_s390x.deb ... 110s Unpacking r-cran-yaml (2.3.8-1) ... 110s Selecting previously unselected package libjs-mathjax. 110s Preparing to unpack .../159-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 110s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 111s Selecting previously unselected package r-cran-knitr. 111s Preparing to unpack .../160-r-cran-knitr_1.45+dfsg-1_all.deb ... 111s Unpacking r-cran-knitr (1.45+dfsg-1) ... 111s Selecting previously unselected package r-cran-cachem. 111s Preparing to unpack .../161-r-cran-cachem_1.0.8-1_s390x.deb ... 111s Unpacking r-cran-cachem (1.0.8-1) ... 111s Selecting previously unselected package r-cran-jquerylib. 111s Preparing to unpack .../162-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 111s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 111s Selecting previously unselected package r-cran-jsonlite. 111s Preparing to unpack .../163-r-cran-jsonlite_1.8.8+dfsg-1_s390x.deb ... 111s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 111s Selecting previously unselected package r-cran-cli. 111s Preparing to unpack .../164-r-cran-cli_3.6.2-1_s390x.deb ... 111s Unpacking r-cran-cli (3.6.2-1) ... 111s Selecting previously unselected package r-cran-glue. 111s Preparing to unpack .../165-r-cran-glue_1.7.0-1_s390x.deb ... 111s Unpacking r-cran-glue (1.7.0-1) ... 111s Selecting previously unselected package r-cran-lifecycle. 111s Preparing to unpack .../166-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 111s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 111s Selecting previously unselected package r-cran-memoise. 111s Preparing to unpack .../167-r-cran-memoise_2.0.1-1_all.deb ... 111s Unpacking r-cran-memoise (2.0.1-1) ... 111s Selecting previously unselected package r-cran-mime. 111s Preparing to unpack .../168-r-cran-mime_0.12-1_s390x.deb ... 111s Unpacking r-cran-mime (0.12-1) ... 111s Selecting previously unselected package r-cran-fs. 111s Preparing to unpack .../169-r-cran-fs_1.6.3+dfsg-1_s390x.deb ... 111s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 111s Selecting previously unselected package r-cran-r6. 111s Preparing to unpack .../170-r-cran-r6_2.5.1-1_all.deb ... 111s Unpacking r-cran-r6 (2.5.1-1) ... 111s Selecting previously unselected package r-cran-rappdirs. 111s Preparing to unpack .../171-r-cran-rappdirs_0.3.3-1_s390x.deb ... 111s Unpacking r-cran-rappdirs (0.3.3-1) ... 111s Selecting previously unselected package r-cran-sass. 111s Preparing to unpack .../172-r-cran-sass_0.4.8+dfsg-1_s390x.deb ... 111s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 111s Selecting previously unselected package r-cran-bslib. 111s Preparing to unpack .../173-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 111s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 111s Selecting previously unselected package r-cran-fontawesome. 112s Preparing to unpack .../174-r-cran-fontawesome_0.5.2-1_all.deb ... 112s Unpacking r-cran-fontawesome (0.5.2-1) ... 112s Selecting previously unselected package r-cran-magrittr. 112s Preparing to unpack .../175-r-cran-magrittr_2.0.3-1_s390x.deb ... 112s Unpacking r-cran-magrittr (2.0.3-1) ... 112s Selecting previously unselected package r-cran-stringi. 112s Preparing to unpack .../176-r-cran-stringi_1.8.3-1_s390x.deb ... 112s Unpacking r-cran-stringi (1.8.3-1) ... 112s Selecting previously unselected package r-cran-vctrs. 112s Preparing to unpack .../177-r-cran-vctrs_0.6.5-1_s390x.deb ... 112s Unpacking r-cran-vctrs (0.6.5-1) ... 112s Selecting previously unselected package r-cran-stringr. 112s Preparing to unpack .../178-r-cran-stringr_1.5.1-1_all.deb ... 112s Unpacking r-cran-stringr (1.5.1-1) ... 112s Selecting previously unselected package r-cran-tinytex. 112s Preparing to unpack .../179-r-cran-tinytex_0.49-1_all.deb ... 112s Unpacking r-cran-tinytex (0.49-1) ... 112s Selecting previously unselected package libjs-modernizr. 112s Preparing to unpack .../180-libjs-modernizr_2.6.2+ds1-5_all.deb ... 112s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 112s Selecting previously unselected package r-cran-pkgkitten. 112s Preparing to unpack .../181-r-cran-pkgkitten_0.2.3-1_all.deb ... 112s Unpacking r-cran-pkgkitten (0.2.3-1) ... 112s Selecting previously unselected package r-cran-rcpp. 112s Preparing to unpack .../182-r-cran-rcpp_1.0.12-1_s390x.deb ... 112s Unpacking r-cran-rcpp (1.0.12-1) ... 112s Selecting previously unselected package r-cran-later. 112s Preparing to unpack .../183-r-cran-later_1.3.2+dfsg-1_s390x.deb ... 112s Unpacking r-cran-later (1.3.2+dfsg-1) ... 112s Selecting previously unselected package r-cran-promises. 112s Preparing to unpack .../184-r-cran-promises_1.2.1+dfsg-1_s390x.deb ... 112s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 112s Selecting previously unselected package r-cran-httpuv. 112s Preparing to unpack .../185-r-cran-httpuv_1.6.14+dfsg-1_s390x.deb ... 112s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 112s Selecting previously unselected package r-cran-xtable. 112s Preparing to unpack .../186-r-cran-xtable_1%3a1.8-4-2_all.deb ... 112s Unpacking r-cran-xtable (1:1.8-4-2) ... 112s Selecting previously unselected package r-cran-sourcetools. 112s Preparing to unpack .../187-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 112s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 112s Selecting previously unselected package r-cran-crayon. 112s Preparing to unpack .../188-r-cran-crayon_1.5.2-1_all.deb ... 112s Unpacking r-cran-crayon (1.5.2-1) ... 112s Selecting previously unselected package r-cran-withr. 112s Preparing to unpack .../189-r-cran-withr_2.5.0-1_all.deb ... 112s Unpacking r-cran-withr (2.5.0-1) ... 112s Selecting previously unselected package r-cran-commonmark. 112s Preparing to unpack .../190-r-cran-commonmark_1.9.1-1_s390x.deb ... 112s Unpacking r-cran-commonmark (1.9.1-1) ... 112s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 112s Preparing to unpack .../191-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 112s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 112s Selecting previously unselected package r-cran-shiny. 112s Preparing to unpack .../192-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 112s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 112s Selecting previously unselected package r-cran-rmarkdown. 112s Preparing to unpack .../193-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 112s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 112s Selecting previously unselected package r-cran-bookdown. 112s Preparing to unpack .../194-r-cran-bookdown_0.37+dfsg-1_all.deb ... 112s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 112s Selecting previously unselected package r-cran-biocmanager. 112s Preparing to unpack .../195-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 112s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 112s Selecting previously unselected package tex-common. 112s Preparing to unpack .../196-tex-common_6.18_all.deb ... 112s Unpacking tex-common (6.18) ... 112s Selecting previously unselected package t1utils. 112s Preparing to unpack .../197-t1utils_1.41-4build2_s390x.deb ... 112s Unpacking t1utils (1.41-4build2) ... 112s Selecting previously unselected package texlive-binaries. 112s Preparing to unpack .../198-texlive-binaries_2023.20230311.66589-9_s390x.deb ... 112s Unpacking texlive-binaries (2023.20230311.66589-9) ... 113s Selecting previously unselected package texlive-base. 113s Preparing to unpack .../199-texlive-base_2023.20240207-1_all.deb ... 113s Unpacking texlive-base (2023.20240207-1) ... 115s Selecting previously unselected package texlive-latex-base. 115s Preparing to unpack .../200-texlive-latex-base_2023.20240207-1_all.deb ... 115s Unpacking texlive-latex-base (2023.20240207-1) ... 115s Selecting previously unselected package texlive-bibtex-extra. 115s Preparing to unpack .../201-texlive-bibtex-extra_2023.20240207-1_all.deb ... 115s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 123s Selecting previously unselected package r-bioc-biocstyle. 123s Preparing to unpack .../202-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 123s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 123s Selecting previously unselected package r-bioc-graph. 123s Preparing to unpack .../203-r-bioc-graph_1.80.0-1_s390x.deb ... 123s Unpacking r-bioc-graph (1.80.0-1) ... 123s Selecting previously unselected package r-cran-bh. 123s Preparing to unpack .../204-r-cran-bh_1.84.0-1_all.deb ... 123s Unpacking r-cran-bh (1.84.0-1) ... 123s Selecting previously unselected package r-bioc-rbgl. 123s Preparing to unpack .../205-r-bioc-rbgl_1.78.0+dfsg-1_s390x.deb ... 123s Unpacking r-bioc-rbgl (1.78.0+dfsg-1) ... 123s Selecting previously unselected package 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up liblatex-tounicode-perl (0.54-2) ... 123s Setting up x11-common (1:7.7+23ubuntu2) ... 124s Setting up node-html5shiv (3.7.3+dfsg-5) ... 124s Setting up libpsl5t64:s390x (0.21.2-1.1) ... 124s Setting up libdeflate0:s390x (1.19-1) ... 124s Setting up linux-libc-dev:s390x (6.8.0-11.11) ... 124s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 124s Setting up libxcb-shm0:s390x (1.15-1) ... 124s Setting up libzzip-0-13:s390x (0.13.72+dfsg.1-1.1) ... 124s Setting up libpaper-utils (1.1.29) ... 124s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 124s Setting up libjs-modernizr (2.6.2+ds1-5) ... 124s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 124s Setting up libpcre2-16-0:s390x (10.42-4ubuntu1) ... 124s Setting up libjs-es5-shim (4.6.7-2) ... 124s Setting up tex-common (6.18) ... 124s update-language: texlive-base not installed and configured, doing nothing! 124s Setting up libio-string-perl (1.08-4) ... 124s Setting up zip (3.0-13) ... 124s Setting up libpcre2-32-0:s390x 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up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 124s Setting up libkpathsea6:s390x (2023.20230311.66589-9) ... 124s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 124s Setting up libwebp7:s390x (1.3.2-0.4) ... 124s Setting up liblzma-dev:s390x (5.4.5-0.3) ... 124s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ... 124s Setting up libpcre2-posix3:s390x (10.42-4ubuntu1) ... 124s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 124s Setting up libnsl-dev:s390x (1.3.0-3) ... 124s Setting up libcrypt-dev:s390x (1:4.4.36-4) ... 124s Setting up libasan8:s390x (14-20240303-1ubuntu1) ... 124s Setting up fonts-lmodern (2.005-1) ... 124s Setting up liblua5.4-0:s390x (5.4.6-3) ... 124s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 124s Setting up libthai-data (0.1.29-2) ... 124s Setting up node-bootstrap-sass (3.4.3-2) ... 124s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 124s Setting up libxss1:s390x (1:1.2.3-1build2) ... 124s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 124s Setting up pandoc-data (3.1.3-1) ... 124s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 124s Setting up libisl23:s390x (0.26-3) ... 124s Setting up libc-dev-bin (2.39-0ubuntu2) ... 124s Setting up node-normalize.css (8.0.1-5) ... 124s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 124s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 124s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 124s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ... 124s Setting up libblas-dev:s390x (3.12.0-3) ... 124s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 124s Setting up dctrl-tools (2.24-3build2) ... 124s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 124s Setting up libitm1:s390x (14-20240303-1ubuntu1) ... 124s Setting up libsynctex2:s390x (2023.20230311.66589-9) ... 124s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 124s Setting up libpotrace0:s390x (1.16-2) ... 124s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 124s Setting up libice6:s390x (2:1.0.10-1build2) ... 124s Setting up liblapack3:s390x (3.12.0-3) ... 124s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 124s Setting up libcurl4t64:s390x (8.5.0-2ubuntu7) ... 124s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 124s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 124s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 124s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 124s Setting up pkgconf:s390x (1.8.1-2) ... 124s Setting up libthai0:s390x (0.1.29-2) ... 124s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 124s Setting up libptexenc1:s390x (2023.20230311.66589-9) ... 124s Setting up cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 124s Setting up pandoc (3.1.3+ds-2) ... 124s Setting up liblapack-dev:s390x (3.12.0-3) ... 124s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 124s Setting up pkg-config:s390x (1.8.1-2) ... 124s Setting up libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 124s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 124s Setting up libc6-dev:s390x (2.39-0ubuntu2) ... 124s Setting up curl (8.5.0-2ubuntu7) ... 124s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 124s Setting up libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 124s Setting up libsm6:s390x (2:1.2.3-1build2) ... 124s Setting up libicu-dev:s390x (74.2-1ubuntu1) ... 124s Setting up libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 124s Setting up libbz2-dev:s390x (1.0.8-5ubuntu1) ... 124s Setting up fontconfig (2.15.0-1ubuntu1) ... 126s Regenerating fonts cache... done. 126s Setting up libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... 126s Setting up libxft2:s390x (2.3.6-1) ... 126s Setting up libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 126s Setting up libncurses-dev:s390x (6.4+20240113-1ubuntu1) ... 126s Setting up libpcre2-dev:s390x (10.42-4ubuntu1) ... 126s Setting up cpp-13 (13.2.0-17ubuntu2) ... 126s Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 126s Setting up libtk8.6:s390x (8.6.13-2) ... 126s Setting up libpango-1.0-0:s390x (1.51.0+ds-4) ... 126s Setting up libreadline-dev:s390x (8.2-3) ... 126s Setting up libcairo2:s390x (1.18.0-1) ... 126s Setting up gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 126s Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 126s Setting up g++-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 126s Setting up gcc-13 (13.2.0-17ubuntu2) ... 126s Setting up libxt6:s390x (1:1.2.1-1.1) ... 126s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 126s Setting up cpp (4:13.2.0-7ubuntu1) ... 126s Setting up gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 126s Setting up libboost-dev:s390x (1.83.0.1ubuntu2) ... 126s Setting up libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 126s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 126s Setting up libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 126s Setting up g++-13 (13.2.0-17ubuntu2) ... 126s Setting up libxmu6:s390x (2:1.1.3-3) ... 126s Setting up gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 126s Setting up libpng-dev:s390x (1.6.43-1) ... 126s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 126s Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 126s Setting up libxaw7:s390x (2:1.0.14-1) ... 126s Setting up gcc (4:13.2.0-7ubuntu1) ... 126s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 126s Setting up r-base-core (4.3.2-1build1) ... 126s 126s Creating config file /etc/R/Renviron with new version 126s Setting up r-cran-crayon (1.5.2-1) ... 126s Setting up r-cran-sourcetools (0.1.7-1-1) ... 126s Setting up r-cran-xml (3.99-0.16.1-1) ... 126s Setting up g++ (4:13.2.0-7ubuntu1) ... 126s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 126s Setting up texlive-binaries (2023.20230311.66589-9) ... 126s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 126s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 126s Setting up build-essential (12.10ubuntu1) ... 126s Setting up r-cran-commonmark (1.9.1-1) ... 126s Setting up r-cran-r6 (2.5.1-1) ... 126s Setting up r-cran-pkgkitten (0.2.3-1) ... 126s Setting up texlive-base (2023.20240207-1) ... 127s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 127s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 127s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 127s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 128s Setting up r-cran-magrittr (2.0.3-1) ... 128s Setting up r-cran-rappdirs (0.3.3-1) ... 128s Setting up r-cran-littler (0.3.19-1) ... 128s Setting up r-cran-bh (1.84.0-1) ... 128s Setting up r-cran-fs (1.6.3+dfsg-1) ... 128s Setting up r-cran-rcpp (1.0.12-1) ... 128s Setting up r-bioc-biocgenerics (0.48.1-2) ... 128s Setting up r-cran-rlang (1.1.3-1) ... 128s Setting up littler (0.3.19-1) ... 128s Setting up r-cran-xfun (0.41+dfsg-1) ... 128s Setting up r-cran-withr (2.5.0-1) ... 128s Setting up r-cran-mime (0.12-1) ... 128s Setting up r-cran-base64enc (0.1-3-3) ... 128s Setting up r-cran-digest (0.6.34-1) ... 128s Setting up r-cran-yaml (2.3.8-1) ... 128s Setting up r-cran-evaluate (0.23-1) ... 128s Setting up r-cran-highr (0.10+dfsg-1) ... 128s Setting up r-cran-glue (1.7.0-1) ... 128s Setting up r-cran-xtable (1:1.8-4-2) ... 128s Setting up r-cran-cli (3.6.2-1) ... 128s Setting up gfortran (4:13.2.0-7ubuntu1) ... 128s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 128s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 128s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 128s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 128s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 128s Setting up r-cran-bitops (1.0-7-1) ... 128s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 128s Setting up r-cran-fastmap (1.1.1-1) ... 128s Setting up r-bioc-biobase (2.62.0-1) ... 128s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 128s Setting up r-cran-stringi (1.8.3-1) ... 128s Setting up texlive-latex-base (2023.20240207-1) ... 128s Setting up r-cran-runit (0.4.32-3) ... 128s Setting up r-cran-later (1.3.2+dfsg-1) ... 128s Setting up r-cran-tinytex (0.49-1) ... 128s Setting up r-cran-knitr (1.45+dfsg-1) ... 128s Setting up r-cran-cachem (1.0.8-1) ... 128s Setting up r-cran-rcurl (1.98-1.14+dfsg-1build1) ... 128s Setting up r-cran-vctrs (0.6.5-1) ... 128s Setting up r-bioc-graph (1.80.0-1) ... 128s Setting up r-cran-ellipsis (0.3.2-2) ... 128s Setting up r-bioc-rbgl (1.78.0+dfsg-1) ... 128s Setting up r-bioc-biocviews (1.70.0-1) ... 128s Setting up r-base-dev (4.3.2-1build1) ... 128s Setting up r-cran-stringr (1.5.1-1) ... 128s Setting up texlive-bibtex-extra (2023.20240207-1) ... 128s Setting up r-cran-memoise (2.0.1-1) ... 128s Setting up r-cran-promises (1.2.1+dfsg-1) ... 128s Setting up r-cran-htmltools (0.5.7-1) ... 128s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 128s Setting up r-cran-sass (0.4.8+dfsg-1) ... 128s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 128s Setting up r-cran-fontawesome (0.5.2-1) ... 128s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 128s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 128s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 128s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 128s Setting up r-cran-bookdown (0.37+dfsg-1) ... 128s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 128s Setting up autopkgtest-satdep (0) ... 128s Processing triggers for man-db (2.12.0-3) ... 129s Processing triggers for install-info (7.1-3) ... 129s Processing triggers for libc-bin (2.39-0ubuntu2) ... 129s Processing triggers for tex-common (6.18) ... 129s Running updmap-sys. This may take some time... done. 129s Running mktexlsr /var/lib/texmf ... done. 129s Building format(s) --all. 175s This may take some time... done. 181s (Reading database ... 96466 files and directories currently installed.) 181s Removing autopkgtest-satdep (0) ... 181s autopkgtest [19:05:26]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 181s autopkgtest [19:05:26]: test pkg-r-autopkgtest: [----------------------- 181s Test: Try to load the R library biocViews 181s 181s R version 4.3.2 (2023-10-31) -- "Eye Holes" 181s Copyright (C) 2023 The R Foundation for Statistical Computing 181s Platform: s390x-ibm-linux-gnu (64-bit) 181s 181s R is free software and comes with ABSOLUTELY NO WARRANTY. 181s You are welcome to redistribute it under certain conditions. 181s Type 'license()' or 'licence()' for distribution details. 181s 181s R is a collaborative project with many contributors. 181s Type 'contributors()' for more information and 181s 'citation()' on how to cite R or R packages in publications. 181s 181s Type 'demo()' for some demos, 'help()' for on-line help, or 181s 'help.start()' for an HTML browser interface to help. 181s Type 'q()' to quit R. 181s 181s > library('biocViews') 182s > 182s > 182s Other tests are currently unsupported! 182s They will be progressively added. 183s autopkgtest [19:05:28]: test pkg-r-autopkgtest: -----------------------] 183s pkg-r-autopkgtest PASS 183s autopkgtest [19:05:28]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 183s autopkgtest [19:05:28]: @@@@@@@@@@@@@@@@@@@@ summary 183s pkg-r-autopkgtest PASS 194s Creating nova instance adt-noble-s390x-r-bioc-biocviews-20240316-190225-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240315.img (UUID 72478735-497c-4832-870c-30bdd7312d7f)...