0s autopkgtest [22:07:10]: starting date and time: 2024-03-17 22:07:10+0000 0s autopkgtest [22:07:10]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [22:07:10]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._z15zk4x/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ncbi-blast+,src:mbedtls --apt-upgrade python-pyani --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=ncbi-blast+/2.12.0+ds-4build1 mbedtls/2.28.7-1.1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-5.secgroup --name adt-noble-s390x-python-pyani-20240317-220710-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 80s autopkgtest [22:08:30]: testbed dpkg architecture: s390x 80s autopkgtest [22:08:30]: testbed apt version: 2.7.12 80s autopkgtest [22:08:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 81s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 81s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB] 81s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 81s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 81s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3691 kB] 81s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [639 kB] 81s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 81s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 81s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 81s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3878 kB] 82s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 82s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.2 kB] 82s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 83s Fetched 8913 kB in 2s (4056 kB/s) 84s Reading package lists... 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Calculating upgrade... 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 87s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 87s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 87s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 88s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 89s Reading package lists... 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Calculating upgrade... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s autopkgtest [22:08:42]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 92s autopkgtest [22:08:42]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyani 96s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-pyani 0.2.12-3 (dsc) [2404 B] 96s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-pyani 0.2.12-3 (tar) [49.0 MB] 96s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-pyani 0.2.12-3 (diff) [11.4 kB] 96s gpgv: Signature made Fri Nov 24 20:24:53 2023 UTC 96s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 96s gpgv: issuer "tille@debian.org" 96s gpgv: Can't check signature: No public key 96s dpkg-source: warning: cannot verify inline signature for ./python-pyani_0.2.12-3.dsc: no acceptable signature found 97s autopkgtest [22:08:47]: testing package python-pyani version 0.2.12-3 98s autopkgtest [22:08:48]: build not needed 104s autopkgtest [22:08:54]: test run-unit-test: preparing testbed 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Starting pkgProblemResolver with broken count: 0 105s Starting 2 pkgProblemResolver with broken count: 0 105s Done 105s The following additional packages will be installed: 105s blt fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 105s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 105s libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 105s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 105s liblapack3 liblbfgsb0 liblcms2-2 libmbedcrypto7t64 libmbedtls14t64 105s libmbedx509-1t64 libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 105s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 105s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 mummer 105s ncbi-blast+ ncbi-data python-matplotlib-data python3-all python3-appdirs 105s python3-biopython python3-brotli python3-cairo python3-contourpy 105s python3-cycler python3-dateutil python3-decorator python3-fonttools 105s python3-freetype python3-fs python3-iniconfig python3-kiwisolver 105s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 105s python3-packaging python3-pandas python3-pandas-lib python3-pil 105s python3-pil.imagetk python3-pluggy python3-pyani python3-pytest 105s python3-reportlab python3-rlpycairo python3-scipy python3-seaborn 105s python3-sympy python3-tk python3-ufolib2 python3-unicodedata2 sgml-base 105s tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings 105s xfonts-utils xml-core 105s Suggested packages: 105s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 105s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 105s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 105s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 105s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 105s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 105s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 105s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 105s texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran python3-dev 105s python-pandas-doc python3-statsmodels python-pil-doc pdf-viewer 105s python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm 105s python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 105s sgml-base-doc debhelper 105s Recommended packages: 105s javascript-common python-biopython-doc python3-bs4 python3-cssselect 105s python3-html5lib python3-bottleneck python3-numexpr python3-odf 105s python3-openpyxl python3-tables python3-olefile g++ | c++-compiler 105s python3-patsy isympy-common 105s The following NEW packages will be installed: 105s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core 105s fonts-dejavu-extra fonts-dejavu-mono fonts-lyx fonts-urw-base35 libblas3 105s libcairo2 libdeflate0 libfontconfig1 libfontenc1 libfreetype6 libgfortran5 105s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 105s libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 105s libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libopenjp2-7 105s libpixman-1-0 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 105s libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 105s libxft2 libxrender1 libxslt1.1 libxss1 mummer ncbi-blast+ ncbi-data 105s python-matplotlib-data python3-all python3-appdirs python3-biopython 105s python3-brotli python3-cairo python3-contourpy python3-cycler 105s python3-dateutil python3-decorator python3-fonttools python3-freetype 105s python3-fs python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 105s python3-matplotlib python3-mpmath python3-numpy python3-packaging 105s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 105s python3-pluggy python3-pyani python3-pytest python3-reportlab 105s python3-rlpycairo python3-scipy python3-seaborn python3-sympy python3-tk 105s python3-ufolib2 python3-unicodedata2 sgml-base tk8.6-blt2.5 unicode-data 105s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 105s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 105s Need to get 115 MB/115 MB of archives. 105s After this operation, 490 MB of additional disk space will be used. 105s Get:1 /tmp/autopkgtest.tEkzXx/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [724 B] 106s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x sgml-base all 1.31 [11.4 kB] 106s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 106s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 106s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 106s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 106s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libfontenc1 s390x 1:1.1.8-1 [14.8 kB] 106s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 106s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 106s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x xfonts-utils s390x 1:7.7+6build2 [94.8 kB] 106s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 106s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 106s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 106s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 106s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 106s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 106s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 106s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-7 [661 kB] 106s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x blt s390x 2.5.3+dfsg-7 [4826 B] 106s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-extra all 2.37-8 [1947 kB] 106s Get:21 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lyx all 2.4.0~RC3-1 [170 kB] 107s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 107s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 107s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 107s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 107s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 107s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 107s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 107s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 107s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 107s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 107s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libimagequant0 s390x 2.18.0-1 [42.9 kB] 107s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 107s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 107s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 107s Get:36 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 107s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 107s Get:38 http://ftpmaster.internal/ubuntu noble/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1 [28.4 kB] 107s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB] 107s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libmbedcrypto7t64 s390x 2.28.7-1.1ubuntu1 [216 kB] 107s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libmbedx509-1t64 s390x 2.28.7-1.1ubuntu1 [46.2 kB] 107s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libmbedtls14t64 s390x 2.28.7-1.1ubuntu1 [84.7 kB] 107s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x libqhull-r8.0 s390x 2020.2-6 [181 kB] 107s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libraqm0 s390x 0.10.1-1 [14.4 kB] 107s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 107s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 107s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 107s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 107s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libwebpdemux2 s390x 1.3.2-0.4 [12.4 kB] 107s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libwebpmux3 s390x 1.3.2-0.4 [25.4 kB] 107s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libxslt1.1 s390x 1.1.35-1 [157 kB] 107s Get:52 http://ftpmaster.internal/ubuntu noble/universe s390x mummer s390x 3.23+dfsg-8 [674 kB] 107s Get:53 http://ftpmaster.internal/ubuntu noble/universe s390x ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB] 107s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x ncbi-blast+ s390x 2.12.0+ds-4build1 [12.8 MB] 107s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 107s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x python3-all s390x 3.12.1-0ubuntu2 [908 B] 107s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x python3-appdirs all 1.4.4-4 [10.9 kB] 107s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x python3-numpy s390x 1:1.24.2-2 [5137 kB] 108s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x python3-tk s390x 3.11.5-1 [114 kB] 108s Get:60 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pil.imagetk s390x 10.2.0-1 [9578 B] 108s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libopenjp2-7 s390x 2.5.0-2 [169 kB] 108s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x python3-pil s390x 10.2.0-1 [519 kB] 108s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x python3-cairo s390x 1.25.1-2 [150 kB] 108s Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x python3-freetype all 2.4.0-1 [83.1 kB] 108s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B] 108s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x python3-reportlab all 4.1.0-1 [683 kB] 108s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x xml-core all 0.19 [20.3 kB] 108s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] 108s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x python3-biopython s390x 1.81+dfsg-3 [2234 kB] 108s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x python3-brotli s390x 1.1.0-2 [383 kB] 108s Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x python3-contourpy s390x 1.0.7-1build2 [271 kB] 108s Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x python3-cycler all 0.11.0-2 [8202 B] 108s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x python3-dateutil all 2.8.2-3 [79.2 kB] 108s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 108s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x python3-scipy s390x 1.11.4-6 [20.1 MB] 108s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 108s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x python3-mpmath all 1.2.1-3 [421 kB] 108s Get:78 http://ftpmaster.internal/ubuntu noble/universe s390x python3-sympy all 1.12-7 [3966 kB] 108s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x python3-fs all 2.4.16-3 [91.1 kB] 108s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x python3-lxml s390x 5.1.0-1 [2268 kB] 108s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x python3-lz4 s390x 4.0.2+dfsg-1build2 [26.8 kB] 108s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x python3-unicodedata2 s390x 15.1.0+ds-1 [370 kB] 108s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x unicode-data all 15.1.0-1 [8878 kB] 109s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x python3-fonttools s390x 4.46.0-1 [1668 kB] 109s Get:85 http://ftpmaster.internal/ubuntu noble/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 109s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x python3-kiwisolver s390x 1.4.4-1build2 [71.9 kB] 109s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x python3-packaging all 23.2-1 [40.6 kB] 109s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x python3-matplotlib s390x 3.6.3-1ubuntu3 [7346 kB] 109s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pandas-lib s390x 2.1.4+dfsg-4ubuntu2 [8852 kB] 109s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 109s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pluggy all 1.4.0-1 [20.4 kB] 109s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x python3-seaborn all 0.13.2-2 [225 kB] 109s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pyani s390x 0.2.12-3 [46.6 kB] 109s Get:94 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pytest all 7.4.4-1 [305 kB] 110s Fetched 115 MB in 4s (30.5 MB/s) 110s Selecting previously unselected package sgml-base. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 110s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 110s Unpacking sgml-base (1.31) ... 110s Selecting previously unselected package libtcl8.6:s390x. 110s Preparing to unpack .../01-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 110s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 110s Selecting previously unselected package libfreetype6:s390x. 110s Preparing to unpack .../02-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 110s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 110s Selecting previously unselected package fonts-dejavu-mono. 110s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 110s Unpacking fonts-dejavu-mono (2.37-8) ... 110s Selecting previously unselected package fonts-dejavu-core. 110s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 110s Unpacking fonts-dejavu-core (2.37-8) ... 110s Selecting previously unselected package libfontenc1:s390x. 110s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1_s390x.deb ... 110s Unpacking libfontenc1:s390x (1:1.1.8-1) ... 110s Selecting previously unselected package x11-common. 110s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu2_all.deb ... 110s Unpacking x11-common (1:7.7+23ubuntu2) ... 110s Selecting previously unselected package xfonts-encodings. 110s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 110s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 110s Selecting previously unselected package xfonts-utils. 110s Preparing to unpack .../08-xfonts-utils_1%3a7.7+6build2_s390x.deb ... 110s Unpacking xfonts-utils (1:7.7+6build2) ... 110s Selecting previously unselected package fonts-urw-base35. 110s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 110s Unpacking fonts-urw-base35 (20200910-8) ... 110s Selecting previously unselected package fontconfig-config. 110s Preparing to unpack .../10-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 110s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 110s Selecting previously unselected package libfontconfig1:s390x. 110s Preparing to unpack .../11-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 110s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 110s Selecting previously unselected package libxrender1:s390x. 110s Preparing to unpack .../12-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 110s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 110s Selecting previously unselected package libxft2:s390x. 110s Preparing to unpack .../13-libxft2_2.3.6-1_s390x.deb ... 110s Unpacking libxft2:s390x (2.3.6-1) ... 110s Selecting previously unselected package libxss1:s390x. 110s Preparing to unpack .../14-libxss1_1%3a1.2.3-1build2_s390x.deb ... 110s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 110s Selecting previously unselected package libtk8.6:s390x. 110s Preparing to unpack .../15-libtk8.6_8.6.13-2_s390x.deb ... 110s Unpacking libtk8.6:s390x (8.6.13-2) ... 110s Selecting previously unselected package tk8.6-blt2.5. 110s Preparing to unpack .../16-tk8.6-blt2.5_2.5.3+dfsg-7_s390x.deb ... 110s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 110s Selecting previously unselected package blt. 110s Preparing to unpack .../17-blt_2.5.3+dfsg-7_s390x.deb ... 110s Unpacking blt (2.5.3+dfsg-7) ... 110s Selecting previously unselected package fonts-dejavu-extra. 110s Preparing to unpack .../18-fonts-dejavu-extra_2.37-8_all.deb ... 110s Unpacking fonts-dejavu-extra (2.37-8) ... 110s Selecting previously unselected package fonts-lyx. 110s Preparing to unpack .../19-fonts-lyx_2.4.0~RC3-1_all.deb ... 110s Unpacking fonts-lyx (2.4.0~RC3-1) ... 110s Selecting previously unselected package libblas3:s390x. 110s Preparing to unpack .../20-libblas3_3.12.0-3_s390x.deb ... 110s Unpacking libblas3:s390x (3.12.0-3) ... 110s Selecting previously unselected package libpixman-1-0:s390x. 110s Preparing to unpack .../21-libpixman-1-0_0.42.2-1_s390x.deb ... 110s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 110s Selecting previously unselected package libxcb-render0:s390x. 110s Preparing to unpack .../22-libxcb-render0_1.15-1_s390x.deb ... 110s Unpacking libxcb-render0:s390x (1.15-1) ... 110s Selecting previously unselected package libxcb-shm0:s390x. 110s Preparing to unpack .../23-libxcb-shm0_1.15-1_s390x.deb ... 110s Unpacking libxcb-shm0:s390x (1.15-1) ... 111s Selecting previously unselected package libcairo2:s390x. 111s Preparing to unpack .../24-libcairo2_1.18.0-1_s390x.deb ... 111s Unpacking libcairo2:s390x (1.18.0-1) ... 111s Selecting previously unselected package libdeflate0:s390x. 111s Preparing to unpack .../25-libdeflate0_1.19-1_s390x.deb ... 111s Unpacking libdeflate0:s390x (1.19-1) ... 111s Selecting previously unselected package libgfortran5:s390x. 111s Preparing to unpack .../26-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 111s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libgomp1:s390x. 111s Preparing to unpack .../27-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 111s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libgraphite2-3:s390x. 111s Preparing to unpack .../28-libgraphite2-3_1.3.14-2_s390x.deb ... 111s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 111s Selecting previously unselected package libharfbuzz0b:s390x. 111s Preparing to unpack .../29-libharfbuzz0b_8.3.0-2_s390x.deb ... 111s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 111s Selecting previously unselected package libimagequant0:s390x. 111s Preparing to unpack .../30-libimagequant0_2.18.0-1_s390x.deb ... 111s Unpacking libimagequant0:s390x (2.18.0-1) ... 111s Selecting previously unselected package libjpeg-turbo8:s390x. 111s Preparing to unpack .../31-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 111s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 111s Selecting previously unselected package libjpeg8:s390x. 111s Preparing to unpack .../32-libjpeg8_8c-2ubuntu11_s390x.deb ... 111s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 111s Selecting previously unselected package libjs-jquery. 111s Preparing to unpack .../33-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 111s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 111s Selecting previously unselected package libjs-jquery-ui. 111s Preparing to unpack .../34-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 111s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 111s Selecting previously unselected package liblapack3:s390x. 111s Preparing to unpack .../35-liblapack3_3.12.0-3_s390x.deb ... 111s Unpacking liblapack3:s390x (3.12.0-3) ... 111s Selecting previously unselected package liblbfgsb0:s390x. 111s Preparing to unpack .../36-liblbfgsb0_3.0+dfsg.4-1_s390x.deb ... 111s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1) ... 111s Selecting previously unselected package liblcms2-2:s390x. 111s Preparing to unpack .../37-liblcms2-2_2.14-2_s390x.deb ... 111s Unpacking liblcms2-2:s390x (2.14-2) ... 111s Selecting previously unselected package libmbedcrypto7t64:s390x. 111s Preparing to unpack .../38-libmbedcrypto7t64_2.28.7-1.1ubuntu1_s390x.deb ... 111s Unpacking libmbedcrypto7t64:s390x (2.28.7-1.1ubuntu1) ... 111s Selecting previously unselected package libmbedx509-1t64:s390x. 111s Preparing to unpack .../39-libmbedx509-1t64_2.28.7-1.1ubuntu1_s390x.deb ... 111s Unpacking libmbedx509-1t64:s390x (2.28.7-1.1ubuntu1) ... 111s Selecting previously unselected package libmbedtls14t64:s390x. 111s Preparing to unpack .../40-libmbedtls14t64_2.28.7-1.1ubuntu1_s390x.deb ... 111s Unpacking libmbedtls14t64:s390x (2.28.7-1.1ubuntu1) ... 111s Selecting previously unselected package libqhull-r8.0:s390x. 111s Preparing to unpack .../41-libqhull-r8.0_2020.2-6_s390x.deb ... 111s Unpacking libqhull-r8.0:s390x (2020.2-6) ... 111s Selecting previously unselected package libraqm0:s390x. 111s Preparing to unpack .../42-libraqm0_0.10.1-1_s390x.deb ... 111s Unpacking libraqm0:s390x (0.10.1-1) ... 111s Selecting previously unselected package libsharpyuv0:s390x. 111s Preparing to unpack .../43-libsharpyuv0_1.3.2-0.4_s390x.deb ... 111s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 111s Selecting previously unselected package libjbig0:s390x. 111s Preparing to unpack .../44-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 111s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 111s Selecting previously unselected package libwebp7:s390x. 111s Preparing to unpack .../45-libwebp7_1.3.2-0.4_s390x.deb ... 111s Unpacking libwebp7:s390x (1.3.2-0.4) ... 111s Selecting previously unselected package libtiff6:s390x. 111s Preparing to unpack .../46-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 111s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 111s Selecting previously unselected package libwebpdemux2:s390x. 111s Preparing to unpack .../47-libwebpdemux2_1.3.2-0.4_s390x.deb ... 111s Unpacking libwebpdemux2:s390x (1.3.2-0.4) ... 111s Selecting previously unselected package libwebpmux3:s390x. 111s Preparing to unpack .../48-libwebpmux3_1.3.2-0.4_s390x.deb ... 111s Unpacking libwebpmux3:s390x (1.3.2-0.4) ... 111s Selecting previously unselected package libxslt1.1:s390x. 111s Preparing to unpack .../49-libxslt1.1_1.1.35-1_s390x.deb ... 111s Unpacking libxslt1.1:s390x (1.1.35-1) ... 111s Selecting previously unselected package mummer. 111s Preparing to unpack .../50-mummer_3.23+dfsg-8_s390x.deb ... 111s Unpacking mummer (3.23+dfsg-8) ... 111s Selecting previously unselected package ncbi-data. 111s Preparing to unpack .../51-ncbi-data_6.1.20170106+dfsg1-10_all.deb ... 111s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ... 111s Selecting previously unselected package ncbi-blast+. 111s Preparing to unpack .../52-ncbi-blast+_2.12.0+ds-4build1_s390x.deb ... 111s Unpacking ncbi-blast+ (2.12.0+ds-4build1) ... 112s Selecting previously unselected package python-matplotlib-data. 112s Preparing to unpack .../53-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 112s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 112s Selecting previously unselected package python3-all. 112s Preparing to unpack .../54-python3-all_3.12.1-0ubuntu2_s390x.deb ... 112s Unpacking python3-all (3.12.1-0ubuntu2) ... 112s Selecting previously unselected package python3-appdirs. 112s Preparing to unpack .../55-python3-appdirs_1.4.4-4_all.deb ... 112s Unpacking python3-appdirs (1.4.4-4) ... 112s Selecting previously unselected package python3-numpy. 112s 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python3-cairo (1.25.1-2) ... 112s Selecting previously unselected package python3-freetype. 112s Preparing to unpack .../62-python3-freetype_2.4.0-1_all.deb ... 112s Unpacking python3-freetype (2.4.0-1) ... 112s Selecting previously unselected package python3-rlpycairo. 112s Preparing to unpack .../63-python3-rlpycairo_0.3.0-3_all.deb ... 112s Unpacking python3-rlpycairo (0.3.0-3) ... 112s Selecting previously unselected package python3-reportlab. 112s Preparing to unpack .../64-python3-reportlab_4.1.0-1_all.deb ... 112s Unpacking python3-reportlab (4.1.0-1) ... 112s Selecting previously unselected package xml-core. 112s Preparing to unpack .../65-xml-core_0.19_all.deb ... 112s Unpacking xml-core (0.19) ... 112s Selecting previously unselected package w3c-sgml-lib. 112s Preparing to unpack .../66-w3c-sgml-lib_1.3-3_all.deb ... 112s Unpacking w3c-sgml-lib (1.3-3) ... 112s Selecting previously unselected package python3-biopython. 112s Preparing to unpack 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114s Unpacking python3-lxml:s390x (5.1.0-1) ... 114s Selecting previously unselected package python3-lz4. 114s Preparing to unpack .../79-python3-lz4_4.0.2+dfsg-1build2_s390x.deb ... 114s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 114s Selecting previously unselected package python3-unicodedata2. 114s Preparing to unpack .../80-python3-unicodedata2_15.1.0+ds-1_s390x.deb ... 114s Unpacking python3-unicodedata2 (15.1.0+ds-1) ... 114s Selecting previously unselected package unicode-data. 114s Preparing to unpack .../81-unicode-data_15.1.0-1_all.deb ... 114s Unpacking unicode-data (15.1.0-1) ... 114s Selecting previously unselected package python3-fonttools. 114s Preparing to unpack .../82-python3-fonttools_4.46.0-1_s390x.deb ... 114s Unpacking python3-fonttools (4.46.0-1) ... 114s Selecting previously unselected package python3-iniconfig. 114s Preparing to unpack .../83-python3-iniconfig_1.1.1-2_all.deb ... 114s Unpacking python3-iniconfig (1.1.1-2) ... 114s Selecting previously unselected package python3-kiwisolver. 114s Preparing to unpack .../84-python3-kiwisolver_1.4.4-1build2_s390x.deb ... 114s Unpacking python3-kiwisolver (1.4.4-1build2) ... 114s Selecting previously unselected package python3-packaging. 114s Preparing to unpack .../85-python3-packaging_23.2-1_all.deb ... 114s Unpacking python3-packaging (23.2-1) ... 114s Selecting previously unselected package python3-matplotlib. 114s Preparing to unpack .../86-python3-matplotlib_3.6.3-1ubuntu3_s390x.deb ... 114s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... 114s Selecting previously unselected package python3-pandas-lib:s390x. 114s Preparing to unpack .../87-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_s390x.deb ... 114s Unpacking python3-pandas-lib:s390x (2.1.4+dfsg-4ubuntu2) ... 115s Selecting previously unselected package python3-pandas. 115s Preparing to unpack .../88-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 115s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 115s Selecting previously 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ncbi-data (6.1.20170106+dfsg1-10) ... 115s Setting up libpixman-1-0:s390x (0.42.2-1) ... 115s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 115s Setting up libmbedcrypto7t64:s390x (2.28.7-1.1ubuntu1) ... 115s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 115s Setting up python3-lz4 (4.0.2+dfsg-1build2) ... 115s Setting up libxcb-render0:s390x (1.15-1) ... 115s Setting up python3-unicodedata2 (15.1.0+ds-1) ... 115s Setting up fonts-lyx (2.4.0~RC3-1) ... 115s Setting up x11-common (1:7.7+23ubuntu2) ... 116s Setting up libdeflate0:s390x (1.19-1) ... 116s Setting up libqhull-r8.0:s390x (2020.2-6) ... 116s Setting up python3-all (3.12.1-0ubuntu2) ... 116s Setting up libxcb-shm0:s390x (1.15-1) ... 116s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 116s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 116s Setting up unicode-data (15.1.0-1) ... 116s Setting up python3-decorator (5.1.1-5) ... 116s Setting up libfontenc1:s390x (1:1.1.8-1) ... 116s Setting up libblas3:s390x (3.12.0-3) ... 116s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 116s Setting up python3-packaging (23.2-1) ... 116s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 116s Setting up python3-brotli (1.1.0-2) ... 116s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 116s Setting up python3-cycler (0.11.0-2) ... 116s Setting up libimagequant0:s390x (2.18.0-1) ... 116s Setting up fonts-dejavu-mono (2.37-8) ... 116s Setting up python3-kiwisolver (1.4.4-1build2) ... 116s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 116s Setting up fonts-dejavu-core (2.37-8) ... 116s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 116s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 116s Setting up python3-pluggy (1.4.0-1) ... 116s Setting up libwebp7:s390x (1.3.2-0.4) ... 116s Setting up fonts-dejavu-extra (2.37-8) ... 116s Setting up libxslt1.1:s390x (1.1.35-1) ... 116s Setting up mummer (3.23+dfsg-8) ... 116s Setting up libopenjp2-7:s390x (2.5.0-2) ... 116s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 116s Setting up python3-dateutil (2.8.2-3) ... 116s Setting up sgml-base (1.31) ... 116s Setting up libxss1:s390x (1:1.2.3-1build2) ... 116s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 116s Setting up python3-mpmath (1.2.1-3) ... 117s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ... 117s Setting up libwebpmux3:s390x (1.3.2-0.4) ... 117s Setting up python3-appdirs (1.4.4-4) ... 117s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 117s Setting up python3-sympy (1.12-7) ... 122s Setting up liblapack3:s390x (3.12.0-3) ... 122s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 122s Setting up libmbedx509-1t64:s390x (2.28.7-1.1ubuntu1) ... 122s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 122s Setting up python3-pytest (7.4.4-1) ... 122s Setting up libwebpdemux2:s390x (1.3.2-0.4) ... 122s Setting up python3-freetype (2.4.0-1) ... 122s Setting up xfonts-utils (1:7.7+6build2) ... 122s Setting up python3-fs (2.4.16-3) ... 123s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 123s Setting up libraqm0:s390x (0.10.1-1) ... 123s Setting up python3-numpy (1:1.24.2-2) ... 124s Setting up libmbedtls14t64:s390x (2.28.7-1.1ubuntu1) ... 124s Setting up python3-lxml:s390x (5.1.0-1) ... 124s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 124s Setting up xml-core (0.19) ... 125s Setting up python3-contourpy (1.0.7-1build2) ... 125s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 125s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1) ... 125s Setting up libxft2:s390x (2.3.6-1) ... 125s Setting up python3-scipy (1.11.4-6) ... 127s Setting up libtk8.6:s390x (8.6.13-2) ... 127s Setting up python3-pandas-lib:s390x (2.1.4+dfsg-4ubuntu2) ... 127s Setting up fonts-urw-base35 (20200910-8) ... 127s Setting up libcairo2:s390x (1.18.0-1) ... 127s Setting up ncbi-blast+ (2.12.0+ds-4build1) ... 127s Setting up python3-pil:s390x (10.2.0-1) ... 128s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 132s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... 132s Setting up python3-cairo (1.25.1-2) ... 132s Setting up blt (2.5.3+dfsg-7) ... 132s Setting up python3-tk:s390x (3.11.5-1) ... 132s Setting up python3-pil.imagetk:s390x (10.2.0-1) ... 132s Setting up python3-rlpycairo (0.3.0-3) ... 132s Setting up python3-reportlab (4.1.0-1) ... 133s Setting up python3-fonttools (4.46.0-1) ... 134s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 134s Setting up python3-matplotlib (3.6.3-1ubuntu3) ... 135s Setting up python3-seaborn (0.13.2-2) ... 135s Processing triggers for man-db (2.12.0-3) ... 136s Processing triggers for libc-bin (2.39-0ubuntu2) ... 136s Processing triggers for sgml-base (1.31) ... 136s Setting up w3c-sgml-lib (1.3-3) ... 159s Setting up python3-biopython (1.81+dfsg-3) ... 160s Setting up python3-pyani (0.2.12-3) ... 160s Setting up autopkgtest-satdep (0) ... 164s (Reading database ... 63310 files and directories currently installed.) 164s Removing autopkgtest-satdep (0) ... 164s autopkgtest [22:09:54]: test run-unit-test: [----------------------- 164s Testing with python3.12 in /tmp/autopkgtest.tEkzXx/build.j8W/src: 165s ============================= test session starts ============================== 165s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3 165s cachedir: .pytest_cache 165s rootdir: /tmp/autopkgtest.tEkzXx/build.j8W/src 166s collecting ... collected 56 items 166s 166s tests/test_anib.py::TestBLASTCmdline::test_blastall_dbjobdict SKIPPED [ 1%] 166s tests/test_anib.py::TestBLASTCmdline::test_blastall_generation SKIPPED [ 3%] 166s tests/test_anib.py::TestBLASTCmdline::test_blastall_graph SKIPPED (l...) [ 5%] 166s tests/test_anib.py::TestBLASTCmdline::test_blastdb_commands PASSED [ 7%] 166s tests/test_anib.py::TestBLASTCmdline::test_blastn_commands PASSED [ 8%] 166s tests/test_anib.py::TestBLASTCmdline::test_blastn_dbjobdict PASSED [ 10%] 166s tests/test_anib.py::TestBLASTCmdline::test_blastn_generation PASSED [ 12%] 168s tests/test_anib.py::TestBLASTCmdline::test_blastn_graph PASSED [ 14%] 168s tests/test_anib.py::TestBLASTCmdline::test_formatdb_generation SKIPPED [ 16%] 168s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastdb_commands SKIPPED [ 17%] 168s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastn_commands SKIPPED [ 19%] 168s tests/test_anib.py::TestBLASTCmdline::test_makeblastdb_generation PASSED [ 21%] 171s tests/test_anib.py::TestFragments::test_fragment_files PASSED [ 23%] 171s tests/test_anib.py::TestParsing::test_blastdir_processing PASSED [ 25%] 171s tests/test_anib.py::TestParsing::test_legacy_blastdir_processing SKIPPED [ 26%] 171s tests/test_anib.py::TestParsing::test_parse_blasttab SKIPPED (legacy...) [ 28%] 171s tests/test_anim.py::TestNUCmerCmdline::test_maxmatch_cmd_generation PASSED [ 30%] 171s tests/test_anim.py::TestNUCmerCmdline::test_multi_cmd_generation PASSED [ 32%] 172s tests/test_anim.py::TestNUCmerCmdline::test_nucmer_job_generation PASSED [ 33%] 172s tests/test_anim.py::TestNUCmerCmdline::test_single_cmd_generation PASSED [ 35%] 172s tests/test_anim.py::TestDeltafileProcessing::test_deltafile_import PASSED [ 37%] 172s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir PASSED [ 39%] 207s tests/test_concordance.py::TestConcordance::test_anib_concordance PASSED [ 41%] 207s tests/test_concordance.py::TestConcordance::test_aniblastall_concordance SKIPPED [ 42%] 216s tests/test_concordance.py::TestConcordance::test_anim_concordance PASSED [ 44%] 233s tests/test_concordance.py::TestConcordance::test_tetra_concordance PASSED [ 46%] 233s tests/test_dependencies.py::test_import_biopython PASSED [ 48%] 233s tests/test_dependencies.py::test_import_matplotlib PASSED [ 50%] 233s tests/test_dependencies.py::test_import_numpy PASSED [ 51%] 233s tests/test_dependencies.py::test_import_pandas PASSED [ 53%] 233s tests/test_dependencies.py::test_import_scipy PASSED [ 55%] 233s tests/test_dependencies.py::test_run_blast PASSED [ 57%] 233s tests/test_dependencies.py::test_run_blastall SKIPPED (unconditional...) [ 58%] 233s tests/test_dependencies.py::test_run_nucmer PASSED [ 60%] 233s tests/test_graphics.py::test_png_mpl PASSED [ 62%] 233s tests/test_graphics.py::test_svg_mpl PASSED [ 64%] 233s tests/test_graphics.py::test_pdf_mpl PASSED [ 66%] 234s tests/test_graphics.py::test_png_seaborn PASSED [ 67%] 234s tests/test_graphics.py::test_svg_seaborn PASSED [ 69%] 235s tests/test_graphics.py::test_pdf_seaborn PASSED [ 71%] 235s tests/test_jobs.py::TestJob::test_add_dependency PASSED [ 73%] 235s tests/test_jobs.py::TestJob::test_create_job PASSED [ 75%] 235s tests/test_jobs.py::TestJob::test_create_job_with_command PASSED [ 76%] 235s tests/test_jobs.py::TestJob::test_remove_dependency PASSED [ 78%] 235s tests/test_jobs.py::TestJobGroup::test_1d_jobgroup PASSED [ 80%] 235s tests/test_jobs.py::TestJobGroup::test_2d_jobgroup PASSED [ 82%] 235s tests/test_jobs.py::TestJobGroup::test_add_dependency PASSED [ 83%] 235s tests/test_jobs.py::TestJobGroup::test_create_jobgroup PASSED [ 85%] 235s tests/test_jobs.py::TestJobGroup::test_remove_dependency PASSED [ 87%] 235s tests/test_multiprocessing.py::TestMultiprocessing::test_cmdsets PASSED [ 89%] 351s tests/test_multiprocessing.py::TestMultiprocessing::test_dependency_graph_run PASSED [ 91%] 351s tests/test_multiprocessing.py::TestMultiprocessing::test_multiprocessing_run PASSED [ 92%] 351s tests/test_parsing.py::test_anim_delta PASSED [ 94%] 369s tests/test_tetra.py::TestTETRA::test_correlations PASSED [ 96%] 369s tests/test_tetra.py::TestTETRA::test_tetraclean PASSED [ 98%] 377s tests/test_tetra.py::TestTETRA::test_zscore PASSED [100%] 377s 377s =============================== warnings summary =============================== 377s ../../../../usr/lib/python3/dist-packages/dateutil/tz/tz.py:37 377s /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). 377s EPOCH = datetime.datetime.utcfromtimestamp(0) 377s 377s ../../../../usr/lib/python3/dist-packages/pyani/pyani_graphics.py:70 377s /usr/lib/python3/dist-packages/pyani/pyani_graphics.py:70: PendingDeprecationWarning: The register_cmap function will be deprecated in a future version. Use ``matplotlib.colormaps.register(name)`` instead. 377s plt.register_cmap(cmap=pyani_config.CMAP_SPBND_BURD) 377s 377s ../../../../usr/lib/python3/dist-packages/pyani/pyani_graphics.py:71 377s /usr/lib/python3/dist-packages/pyani/pyani_graphics.py:71: PendingDeprecationWarning: The register_cmap function will be deprecated in a future version. Use ``matplotlib.colormaps.register(name)`` instead. 377s plt.register_cmap(cmap=pyani_config.CMAP_HADAMARD_BURD) 377s 377s ../../../../usr/lib/python3/dist-packages/pyani/pyani_graphics.py:72 377s /usr/lib/python3/dist-packages/pyani/pyani_graphics.py:72: PendingDeprecationWarning: The register_cmap function will be deprecated in a future version. Use ``matplotlib.colormaps.register(name)`` instead. 377s plt.register_cmap(cmap=pyani_config.CMAP_BURD) 377s 377s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 377s ============ 46 passed, 10 skipped, 4 warnings in 212.09s (0:03:32) ============ 377s autopkgtest [22:13:27]: test run-unit-test: -----------------------] 378s run-unit-test PASS 378s autopkgtest [22:13:28]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 378s autopkgtest [22:13:28]: test autodep8-python3: preparing testbed 544s autopkgtest [22:16:14]: testbed dpkg architecture: s390x 545s autopkgtest [22:16:15]: testbed apt version: 2.7.12 545s autopkgtest [22:16:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 545s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 546s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 546s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB] 546s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 546s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3691 kB] 546s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [639 kB] 547s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 547s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 547s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 547s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3878 kB] 547s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 547s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.2 kB] 547s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 548s Fetched 8913 kB in 2s (3908 kB/s) 548s Reading package lists... 551s Reading package lists... 551s Building dependency tree... 551s Reading state information... 551s Calculating upgrade... 551s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 551s Reading package lists... 551s Building dependency tree... 551s Reading state information... 551s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 552s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 552s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 552s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 552s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 553s Reading package lists... 553s Reading package lists... 553s Building dependency tree... 553s Reading state information... 553s Calculating upgrade... 553s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 553s Reading package lists... 554s Building dependency tree... 554s Reading state information... 554s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 558s Reading package lists... 558s Building dependency tree... 558s Reading state information... 558s Starting pkgProblemResolver with broken count: 0 558s Starting 2 pkgProblemResolver with broken count: 0 558s Done 558s The following additional packages will be installed: 559s blt fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 559s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 559s libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 559s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 559s liblapack3 liblbfgsb0 liblcms2-2 libmbedcrypto7t64 libmbedtls14t64 559s libmbedx509-1t64 libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 559s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 559s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 mummer 559s ncbi-blast+ ncbi-data python-matplotlib-data python3-all python3-appdirs 559s python3-biopython python3-brotli python3-cairo python3-contourpy 559s python3-cycler python3-dateutil python3-decorator python3-fonttools 559s python3-freetype python3-fs python3-kiwisolver python3-lxml python3-lz4 559s python3-matplotlib python3-mpmath python3-numpy python3-packaging 559s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 559s python3-pyani python3-reportlab python3-rlpycairo python3-scipy 559s python3-seaborn python3-sympy python3-tk python3-ufolib2 sgml-base 559s tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings 559s xfonts-utils xml-core 559s Suggested packages: 559s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 559s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 559s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 559s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 559s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 559s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 559s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 559s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 559s texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran python3-dev 559s python3-pytest python-pandas-doc python3-statsmodels python-pil-doc 559s pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel 559s rl-renderpm python-scipy-doc texlive-fonts-extra python-sympy-doc tix 559s python3-tk-dbg sgml-base-doc debhelper 559s Recommended packages: 559s javascript-common python-biopython-doc python3-bs4 python3-cssselect 559s python3-html5lib python3-bottleneck python3-numexpr python3-odf 559s python3-openpyxl python3-tables python3-olefile g++ | c++-compiler 559s python3-patsy isympy-common 559s The following NEW packages will be installed: 559s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core 559s fonts-dejavu-extra fonts-dejavu-mono fonts-lyx fonts-urw-base35 libblas3 559s libcairo2 libdeflate0 libfontconfig1 libfontenc1 libfreetype6 libgfortran5 559s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 559s libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 559s libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libopenjp2-7 559s libpixman-1-0 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 559s libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 559s libxft2 libxrender1 libxslt1.1 libxss1 mummer ncbi-blast+ ncbi-data 559s python-matplotlib-data python3-all python3-appdirs python3-biopython 559s python3-brotli python3-cairo python3-contourpy python3-cycler 559s python3-dateutil python3-decorator python3-fonttools python3-freetype 559s python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 559s python3-mpmath python3-numpy python3-packaging python3-pandas 559s python3-pandas-lib python3-pil python3-pil.imagetk python3-pyani 559s python3-reportlab python3-rlpycairo python3-scipy python3-seaborn 559s python3-sympy python3-tk python3-ufolib2 sgml-base tk8.6-blt2.5 unicode-data 559s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 559s 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. 559s Need to get 114 MB/114 MB of archives. 559s After this operation, 486 MB of additional disk space will be used. 559s Get:1 /tmp/autopkgtest.tEkzXx/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [716 B] 559s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x sgml-base all 1.31 [11.4 kB] 559s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 559s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 559s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 559s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 559s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libfontenc1 s390x 1:1.1.8-1 [14.8 kB] 559s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 559s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 559s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x xfonts-utils s390x 1:7.7+6build2 [94.8 kB] 559s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 560s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 560s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 560s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 560s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 560s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 560s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 560s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-7 [661 kB] 560s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x blt s390x 2.5.3+dfsg-7 [4826 B] 560s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-extra all 2.37-8 [1947 kB] 560s Get:21 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lyx all 2.4.0~RC3-1 [170 kB] 560s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 560s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 560s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 560s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 560s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 560s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 560s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 560s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 560s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 560s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 560s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libimagequant0 s390x 2.18.0-1 [42.9 kB] 560s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 560s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 560s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 560s Get:36 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 560s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 560s Get:38 http://ftpmaster.internal/ubuntu noble/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1 [28.4 kB] 560s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB] 560s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libmbedcrypto7t64 s390x 2.28.7-1.1ubuntu1 [216 kB] 560s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libmbedx509-1t64 s390x 2.28.7-1.1ubuntu1 [46.2 kB] 560s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libmbedtls14t64 s390x 2.28.7-1.1ubuntu1 [84.7 kB] 560s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x libqhull-r8.0 s390x 2020.2-6 [181 kB] 560s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libraqm0 s390x 0.10.1-1 [14.4 kB] 560s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 560s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 560s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 560s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 560s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libwebpdemux2 s390x 1.3.2-0.4 [12.4 kB] 560s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libwebpmux3 s390x 1.3.2-0.4 [25.4 kB] 560s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libxslt1.1 s390x 1.1.35-1 [157 kB] 560s Get:52 http://ftpmaster.internal/ubuntu noble/universe s390x mummer s390x 3.23+dfsg-8 [674 kB] 560s Get:53 http://ftpmaster.internal/ubuntu noble/universe s390x ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB] 560s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x ncbi-blast+ s390x 2.12.0+ds-4build1 [12.8 MB] 561s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 561s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x python3-all s390x 3.12.1-0ubuntu2 [908 B] 561s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x python3-appdirs all 1.4.4-4 [10.9 kB] 561s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x python3-numpy s390x 1:1.24.2-2 [5137 kB] 561s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x python3-tk s390x 3.11.5-1 [114 kB] 561s Get:60 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pil.imagetk s390x 10.2.0-1 [9578 B] 561s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libopenjp2-7 s390x 2.5.0-2 [169 kB] 561s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x python3-pil s390x 10.2.0-1 [519 kB] 561s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x python3-cairo s390x 1.25.1-2 [150 kB] 561s Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x python3-freetype all 2.4.0-1 [83.1 kB] 561s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B] 561s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x python3-reportlab all 4.1.0-1 [683 kB] 561s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x xml-core all 0.19 [20.3 kB] 561s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] 561s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x python3-biopython s390x 1.81+dfsg-3 [2234 kB] 561s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x python3-brotli s390x 1.1.0-2 [383 kB] 561s Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x python3-contourpy s390x 1.0.7-1build2 [271 kB] 561s Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x python3-cycler all 0.11.0-2 [8202 B] 561s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x python3-dateutil all 2.8.2-3 [79.2 kB] 561s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 561s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x python3-scipy s390x 1.11.4-6 [20.1 MB] 562s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 562s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x python3-mpmath all 1.2.1-3 [421 kB] 562s Get:78 http://ftpmaster.internal/ubuntu noble/universe s390x python3-sympy all 1.12-7 [3966 kB] 562s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x python3-fs all 2.4.16-3 [91.1 kB] 562s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x python3-lxml s390x 5.1.0-1 [2268 kB] 562s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x python3-lz4 s390x 4.0.2+dfsg-1build2 [26.8 kB] 562s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x unicode-data all 15.1.0-1 [8878 kB] 563s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x python3-fonttools s390x 4.46.0-1 [1668 kB] 563s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x python3-kiwisolver s390x 1.4.4-1build2 [71.9 kB] 563s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x python3-packaging all 23.2-1 [40.6 kB] 563s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x python3-matplotlib s390x 3.6.3-1ubuntu3 [7346 kB] 563s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pandas-lib s390x 2.1.4+dfsg-4ubuntu2 [8852 kB] 564s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 564s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x python3-seaborn all 0.13.2-2 [225 kB] 564s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pyani s390x 0.2.12-3 [46.6 kB] 564s Fetched 114 MB in 5s (21.8 MB/s) 564s Selecting previously unselected package sgml-base. 564s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 564s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 564s Unpacking sgml-base (1.31) ... 564s Selecting previously unselected package libtcl8.6:s390x. 564s Preparing to unpack .../01-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 564s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 564s Selecting previously unselected package libfreetype6:s390x. 564s Preparing to unpack .../02-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 564s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 564s Selecting previously unselected package fonts-dejavu-mono. 564s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 564s Unpacking fonts-dejavu-mono (2.37-8) ... 564s Selecting previously unselected package fonts-dejavu-core. 564s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 564s Unpacking fonts-dejavu-core (2.37-8) ... 564s Selecting previously unselected package libfontenc1:s390x. 564s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1_s390x.deb ... 564s Unpacking libfontenc1:s390x (1:1.1.8-1) ... 564s Selecting previously unselected package x11-common. 564s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu2_all.deb ... 564s Unpacking x11-common (1:7.7+23ubuntu2) ... 564s Selecting previously unselected package xfonts-encodings. 564s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 564s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 564s Selecting previously unselected package xfonts-utils. 564s Preparing to unpack .../08-xfonts-utils_1%3a7.7+6build2_s390x.deb ... 564s Unpacking xfonts-utils (1:7.7+6build2) ... 564s Selecting previously unselected package fonts-urw-base35. 564s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 564s Unpacking fonts-urw-base35 (20200910-8) ... 565s Selecting previously unselected package fontconfig-config. 565s Preparing to unpack .../10-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 565s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 565s Selecting previously unselected package libfontconfig1:s390x. 565s Preparing to unpack .../11-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 565s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 565s Selecting previously unselected package libxrender1:s390x. 565s Preparing to unpack .../12-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 565s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 565s Selecting previously unselected package libxft2:s390x. 565s Preparing to unpack .../13-libxft2_2.3.6-1_s390x.deb ... 565s Unpacking libxft2:s390x (2.3.6-1) ... 565s Selecting previously unselected package libxss1:s390x. 565s Preparing to unpack .../14-libxss1_1%3a1.2.3-1build2_s390x.deb ... 565s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 565s Selecting previously unselected package libtk8.6:s390x. 565s Preparing to unpack .../15-libtk8.6_8.6.13-2_s390x.deb ... 565s Unpacking libtk8.6:s390x (8.6.13-2) ... 565s Selecting previously unselected package tk8.6-blt2.5. 565s Preparing to unpack .../16-tk8.6-blt2.5_2.5.3+dfsg-7_s390x.deb ... 565s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 565s Selecting previously unselected package blt. 565s Preparing to unpack .../17-blt_2.5.3+dfsg-7_s390x.deb ... 565s Unpacking blt (2.5.3+dfsg-7) ... 565s Selecting previously unselected package fonts-dejavu-extra. 565s Preparing to unpack .../18-fonts-dejavu-extra_2.37-8_all.deb ... 565s Unpacking fonts-dejavu-extra (2.37-8) ... 565s Selecting previously unselected package fonts-lyx. 565s Preparing to unpack .../19-fonts-lyx_2.4.0~RC3-1_all.deb ... 565s Unpacking fonts-lyx (2.4.0~RC3-1) ... 565s Selecting previously unselected package libblas3:s390x. 565s Preparing to unpack .../20-libblas3_3.12.0-3_s390x.deb ... 565s Unpacking libblas3:s390x (3.12.0-3) ... 565s Selecting previously unselected package libpixman-1-0:s390x. 565s Preparing to unpack .../21-libpixman-1-0_0.42.2-1_s390x.deb ... 565s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 565s Selecting previously unselected package libxcb-render0:s390x. 565s Preparing to unpack .../22-libxcb-render0_1.15-1_s390x.deb ... 565s Unpacking libxcb-render0:s390x (1.15-1) ... 565s Selecting previously unselected package libxcb-shm0:s390x. 565s Preparing to unpack .../23-libxcb-shm0_1.15-1_s390x.deb ... 565s Unpacking libxcb-shm0:s390x (1.15-1) ... 565s Selecting previously unselected package libcairo2:s390x. 565s Preparing to unpack .../24-libcairo2_1.18.0-1_s390x.deb ... 565s Unpacking libcairo2:s390x (1.18.0-1) ... 565s Selecting previously unselected package libdeflate0:s390x. 565s Preparing to unpack .../25-libdeflate0_1.19-1_s390x.deb ... 565s Unpacking libdeflate0:s390x (1.19-1) ... 565s Selecting previously unselected package libgfortran5:s390x. 565s Preparing to unpack .../26-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 565s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 565s Selecting previously unselected package libgomp1:s390x. 565s Preparing to unpack .../27-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 565s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 565s Selecting previously unselected package libgraphite2-3:s390x. 565s Preparing to unpack .../28-libgraphite2-3_1.3.14-2_s390x.deb ... 565s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 565s Selecting previously unselected package libharfbuzz0b:s390x. 565s Preparing to unpack .../29-libharfbuzz0b_8.3.0-2_s390x.deb ... 565s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 565s Selecting previously unselected package libimagequant0:s390x. 565s Preparing to unpack .../30-libimagequant0_2.18.0-1_s390x.deb ... 565s Unpacking libimagequant0:s390x (2.18.0-1) ... 565s Selecting previously unselected package libjpeg-turbo8:s390x. 565s Preparing to unpack .../31-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 565s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 565s Selecting previously unselected package libjpeg8:s390x. 565s Preparing to unpack .../32-libjpeg8_8c-2ubuntu11_s390x.deb ... 565s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 565s Selecting previously unselected package libjs-jquery. 565s Preparing to unpack .../33-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 565s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 565s Selecting previously unselected package libjs-jquery-ui. 565s Preparing to unpack .../34-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 565s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 565s Selecting previously unselected package liblapack3:s390x. 565s Preparing to unpack .../35-liblapack3_3.12.0-3_s390x.deb ... 565s Unpacking liblapack3:s390x (3.12.0-3) ... 565s Selecting previously unselected package liblbfgsb0:s390x. 565s Preparing to unpack .../36-liblbfgsb0_3.0+dfsg.4-1_s390x.deb ... 565s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1) ... 565s Selecting previously unselected package liblcms2-2:s390x. 565s Preparing to unpack .../37-liblcms2-2_2.14-2_s390x.deb ... 565s Unpacking liblcms2-2:s390x (2.14-2) ... 565s Selecting previously unselected package libmbedcrypto7t64:s390x. 565s Preparing to unpack .../38-libmbedcrypto7t64_2.28.7-1.1ubuntu1_s390x.deb ... 565s Unpacking libmbedcrypto7t64:s390x (2.28.7-1.1ubuntu1) ... 565s Selecting previously unselected package libmbedx509-1t64:s390x. 565s Preparing to unpack .../39-libmbedx509-1t64_2.28.7-1.1ubuntu1_s390x.deb ... 565s Unpacking libmbedx509-1t64:s390x (2.28.7-1.1ubuntu1) ... 565s Selecting previously unselected package libmbedtls14t64:s390x. 565s Preparing to unpack .../40-libmbedtls14t64_2.28.7-1.1ubuntu1_s390x.deb ... 565s Unpacking libmbedtls14t64:s390x (2.28.7-1.1ubuntu1) ... 565s Selecting previously unselected package libqhull-r8.0:s390x. 565s Preparing to unpack .../41-libqhull-r8.0_2020.2-6_s390x.deb ... 565s Unpacking libqhull-r8.0:s390x (2020.2-6) ... 565s Selecting previously unselected package libraqm0:s390x. 565s Preparing to unpack .../42-libraqm0_0.10.1-1_s390x.deb ... 565s Unpacking libraqm0:s390x (0.10.1-1) ... 565s Selecting previously unselected package libsharpyuv0:s390x. 565s Preparing to unpack .../43-libsharpyuv0_1.3.2-0.4_s390x.deb ... 565s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 565s Selecting previously unselected package libjbig0:s390x. 565s Preparing to unpack .../44-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 565s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 565s Selecting previously unselected package libwebp7:s390x. 565s Preparing to unpack .../45-libwebp7_1.3.2-0.4_s390x.deb ... 565s Unpacking libwebp7:s390x (1.3.2-0.4) ... 567s Selecting previously unselected package libtiff6:s390x. 567s Preparing to unpack .../46-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 567s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 567s Selecting previously unselected package libwebpdemux2:s390x. 567s Preparing to unpack .../47-libwebpdemux2_1.3.2-0.4_s390x.deb ... 567s Unpacking libwebpdemux2:s390x (1.3.2-0.4) ... 567s Selecting previously unselected package libwebpmux3:s390x. 567s Preparing to unpack .../48-libwebpmux3_1.3.2-0.4_s390x.deb ... 567s Unpacking libwebpmux3:s390x (1.3.2-0.4) ... 567s Selecting previously unselected package libxslt1.1:s390x. 567s Preparing to unpack .../49-libxslt1.1_1.1.35-1_s390x.deb ... 567s Unpacking libxslt1.1:s390x (1.1.35-1) ... 567s Selecting previously unselected package mummer. 567s Preparing to unpack .../50-mummer_3.23+dfsg-8_s390x.deb ... 567s Unpacking mummer (3.23+dfsg-8) ... 567s Selecting previously unselected package ncbi-data. 567s Preparing to unpack .../51-ncbi-data_6.1.20170106+dfsg1-10_all.deb ... 567s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ... 567s Selecting previously unselected package ncbi-blast+. 567s Preparing to unpack .../52-ncbi-blast+_2.12.0+ds-4build1_s390x.deb ... 567s Unpacking ncbi-blast+ (2.12.0+ds-4build1) ... 567s Selecting previously unselected package python-matplotlib-data. 567s Preparing to unpack .../53-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 567s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 567s Selecting previously unselected package python3-all. 567s Preparing to unpack .../54-python3-all_3.12.1-0ubuntu2_s390x.deb ... 567s Unpacking python3-all (3.12.1-0ubuntu2) ... 567s Selecting previously unselected package python3-appdirs. 567s Preparing to unpack .../55-python3-appdirs_1.4.4-4_all.deb ... 567s Unpacking python3-appdirs (1.4.4-4) ... 567s Selecting previously unselected package python3-numpy. 567s Preparing to unpack .../56-python3-numpy_1%3a1.24.2-2_s390x.deb ... 567s Unpacking python3-numpy (1:1.24.2-2) ... 567s Selecting previously unselected package python3-tk:s390x. 567s Preparing to unpack .../57-python3-tk_3.11.5-1_s390x.deb ... 567s Unpacking python3-tk:s390x (3.11.5-1) ... 567s Selecting previously unselected package python3-pil.imagetk:s390x. 567s Preparing to unpack .../58-python3-pil.imagetk_10.2.0-1_s390x.deb ... 567s Unpacking python3-pil.imagetk:s390x (10.2.0-1) ... 567s Selecting previously unselected package libopenjp2-7:s390x. 567s Preparing to unpack .../59-libopenjp2-7_2.5.0-2_s390x.deb ... 567s Unpacking libopenjp2-7:s390x (2.5.0-2) ... 567s Selecting previously unselected package python3-pil:s390x. 567s Preparing to unpack .../60-python3-pil_10.2.0-1_s390x.deb ... 567s Unpacking python3-pil:s390x (10.2.0-1) ... 567s Selecting previously unselected package python3-cairo. 567s Preparing to unpack .../61-python3-cairo_1.25.1-2_s390x.deb ... 567s Unpacking python3-cairo (1.25.1-2) ... 567s Selecting previously unselected package python3-freetype. 567s Preparing to unpack .../62-python3-freetype_2.4.0-1_all.deb ... 567s Unpacking python3-freetype (2.4.0-1) ... 567s Selecting previously unselected package python3-rlpycairo. 567s Preparing to unpack .../63-python3-rlpycairo_0.3.0-3_all.deb ... 567s Unpacking python3-rlpycairo (0.3.0-3) ... 567s Selecting previously unselected package python3-reportlab. 567s Preparing to unpack .../64-python3-reportlab_4.1.0-1_all.deb ... 567s Unpacking python3-reportlab (4.1.0-1) ... 567s Selecting previously unselected package xml-core. 567s Preparing to unpack .../65-xml-core_0.19_all.deb ... 567s Unpacking xml-core (0.19) ... 567s Selecting previously unselected package w3c-sgml-lib. 567s Preparing to unpack .../66-w3c-sgml-lib_1.3-3_all.deb ... 567s Unpacking w3c-sgml-lib (1.3-3) ... 567s Selecting previously unselected package python3-biopython. 567s Preparing to unpack .../67-python3-biopython_1.81+dfsg-3_s390x.deb ... 567s Unpacking python3-biopython (1.81+dfsg-3) ... 567s Selecting previously unselected package python3-brotli. 567s Preparing to unpack .../68-python3-brotli_1.1.0-2_s390x.deb ... 567s Unpacking python3-brotli (1.1.0-2) ... 567s Selecting previously unselected package python3-contourpy. 567s Preparing to unpack .../69-python3-contourpy_1.0.7-1build2_s390x.deb ... 567s Unpacking python3-contourpy (1.0.7-1build2) ... 567s Selecting previously unselected package python3-cycler. 567s Preparing to unpack .../70-python3-cycler_0.11.0-2_all.deb ... 567s Unpacking python3-cycler (0.11.0-2) ... 567s Selecting previously unselected package python3-dateutil. 567s Preparing to unpack .../71-python3-dateutil_2.8.2-3_all.deb ... 567s Unpacking python3-dateutil (2.8.2-3) ... 567s Selecting previously unselected package python3-decorator. 567s Preparing to unpack .../72-python3-decorator_5.1.1-5_all.deb ... 567s Unpacking python3-decorator (5.1.1-5) ... 567s Selecting previously unselected package python3-scipy. 567s Preparing to unpack .../73-python3-scipy_1.11.4-6_s390x.deb ... 567s Unpacking python3-scipy (1.11.4-6) ... 568s Selecting previously unselected package python3-ufolib2. 568s Preparing to unpack .../74-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 568s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 568s Selecting previously unselected package python3-mpmath. 568s Preparing to unpack .../75-python3-mpmath_1.2.1-3_all.deb ... 568s Unpacking python3-mpmath (1.2.1-3) ... 568s Selecting previously unselected package python3-sympy. 568s Preparing to unpack .../76-python3-sympy_1.12-7_all.deb ... 568s Unpacking python3-sympy (1.12-7) ... 568s Selecting previously unselected package python3-fs. 568s Preparing to unpack .../77-python3-fs_2.4.16-3_all.deb ... 568s Unpacking python3-fs (2.4.16-3) ... 568s Selecting previously unselected package python3-lxml:s390x. 568s Preparing to unpack .../78-python3-lxml_5.1.0-1_s390x.deb ... 568s Unpacking python3-lxml:s390x (5.1.0-1) ... 568s Selecting previously unselected package python3-lz4. 568s Preparing to unpack .../79-python3-lz4_4.0.2+dfsg-1build2_s390x.deb ... 568s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 568s Selecting previously unselected package unicode-data. 568s Preparing to unpack .../80-unicode-data_15.1.0-1_all.deb ... 568s Unpacking unicode-data (15.1.0-1) ... 568s Selecting previously unselected package python3-fonttools. 568s Preparing to unpack .../81-python3-fonttools_4.46.0-1_s390x.deb ... 568s Unpacking python3-fonttools (4.46.0-1) ... 568s Selecting previously unselected package python3-kiwisolver. 568s Preparing to unpack .../82-python3-kiwisolver_1.4.4-1build2_s390x.deb ... 568s Unpacking python3-kiwisolver (1.4.4-1build2) ... 568s Selecting previously unselected package python3-packaging. 568s Preparing to unpack .../83-python3-packaging_23.2-1_all.deb ... 568s Unpacking python3-packaging (23.2-1) ... 568s Selecting previously unselected package python3-matplotlib. 568s Preparing to unpack .../84-python3-matplotlib_3.6.3-1ubuntu3_s390x.deb ... 568s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... 569s Selecting previously unselected package python3-pandas-lib:s390x. 569s Preparing to unpack .../85-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_s390x.deb ... 569s Unpacking python3-pandas-lib:s390x (2.1.4+dfsg-4ubuntu2) ... 569s Selecting previously unselected package python3-pandas. 569s Preparing to unpack .../86-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 569s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 569s Selecting previously unselected package python3-seaborn. 569s Preparing to unpack .../87-python3-seaborn_0.13.2-2_all.deb ... 569s Unpacking python3-seaborn (0.13.2-2) ... 569s Selecting previously unselected package python3-pyani. 569s Preparing to unpack .../88-python3-pyani_0.2.12-3_s390x.deb ... 569s Unpacking python3-pyani (0.2.12-3) ... 569s Selecting previously unselected package autopkgtest-satdep. 569s Preparing to unpack .../89-2-autopkgtest-satdep.deb ... 569s Unpacking autopkgtest-satdep (0) ... 569s Setting up libgraphite2-3:s390x (1.3.14-2) ... 569s Setting up liblcms2-2:s390x (2.14-2) ... 569s Setting up ncbi-data (6.1.20170106+dfsg1-10) ... 569s Setting up libpixman-1-0:s390x (0.42.2-1) ... 569s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 569s Setting up libmbedcrypto7t64:s390x (2.28.7-1.1ubuntu1) ... 569s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 569s Setting up python3-lz4 (4.0.2+dfsg-1build2) ... 569s Setting up libxcb-render0:s390x (1.15-1) ... 569s Setting up fonts-lyx (2.4.0~RC3-1) ... 569s Setting up x11-common (1:7.7+23ubuntu2) ... 570s Setting up libdeflate0:s390x (1.19-1) ... 570s Setting up libqhull-r8.0:s390x (2020.2-6) ... 570s Setting up python3-all (3.12.1-0ubuntu2) ... 570s Setting up libxcb-shm0:s390x (1.15-1) ... 570s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 570s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 570s Setting up unicode-data (15.1.0-1) ... 570s Setting up python3-decorator (5.1.1-5) ... 570s Setting up libfontenc1:s390x (1:1.1.8-1) ... 570s Setting up libblas3:s390x (3.12.0-3) ... 570s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 570s Setting up python3-packaging (23.2-1) ... 570s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 570s Setting up python3-brotli (1.1.0-2) ... 570s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 570s Setting up python3-cycler (0.11.0-2) ... 570s Setting up libimagequant0:s390x (2.18.0-1) ... 570s Setting up fonts-dejavu-mono (2.37-8) ... 570s Setting up python3-kiwisolver (1.4.4-1build2) ... 570s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 570s Setting up fonts-dejavu-core (2.37-8) ... 570s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 570s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 570s Setting up libwebp7:s390x (1.3.2-0.4) ... 570s Setting up fonts-dejavu-extra (2.37-8) ... 570s Setting up libxslt1.1:s390x (1.1.35-1) ... 570s Setting up mummer (3.23+dfsg-8) ... 570s Setting up libopenjp2-7:s390x (2.5.0-2) ... 570s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 570s Setting up python3-dateutil (2.8.2-3) ... 571s Setting up sgml-base (1.31) ... 571s Setting up libxss1:s390x (1:1.2.3-1build2) ... 571s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 571s Setting up python3-mpmath (1.2.1-3) ... 571s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ... 571s Setting up libwebpmux3:s390x (1.3.2-0.4) ... 571s Setting up python3-appdirs (1.4.4-4) ... 571s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 571s Setting up python3-sympy (1.12-7) ... 576s Setting up liblapack3:s390x (3.12.0-3) ... 576s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 576s Setting up libmbedx509-1t64:s390x (2.28.7-1.1ubuntu1) ... 576s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 576s Setting up libwebpdemux2:s390x (1.3.2-0.4) ... 576s Setting up python3-freetype (2.4.0-1) ... 576s Setting up xfonts-utils (1:7.7+6build2) ... 576s Setting up python3-fs (2.4.16-3) ... 576s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 576s Setting up libraqm0:s390x (0.10.1-1) ... 576s Setting up python3-numpy (1:1.24.2-2) ... 578s Setting up libmbedtls14t64:s390x (2.28.7-1.1ubuntu1) ... 578s Setting up python3-lxml:s390x (5.1.0-1) ... 578s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 578s Setting up xml-core (0.19) ... 578s Setting up python3-contourpy (1.0.7-1build2) ... 579s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 579s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1) ... 579s Setting up libxft2:s390x (2.3.6-1) ... 579s Setting up python3-scipy (1.11.4-6) ... 581s Setting up libtk8.6:s390x (8.6.13-2) ... 581s Setting up python3-pandas-lib:s390x (2.1.4+dfsg-4ubuntu2) ... 581s Setting up fonts-urw-base35 (20200910-8) ... 581s Setting up libcairo2:s390x (1.18.0-1) ... 581s Setting up ncbi-blast+ (2.12.0+ds-4build1) ... 581s Setting up python3-pil:s390x (10.2.0-1) ... 582s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 585s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... 585s Setting up python3-cairo (1.25.1-2) ... 585s Setting up blt (2.5.3+dfsg-7) ... 585s Setting up python3-tk:s390x (3.11.5-1) ... 586s Setting up python3-pil.imagetk:s390x (10.2.0-1) ... 586s Setting up python3-rlpycairo (0.3.0-3) ... 586s Setting up python3-reportlab (4.1.0-1) ... 586s Setting up python3-fonttools (4.46.0-1) ... 587s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 587s Setting up python3-matplotlib (3.6.3-1ubuntu3) ... 589s Setting up python3-seaborn (0.13.2-2) ... 589s Processing triggers for man-db (2.12.0-3) ... 590s Processing triggers for libc-bin (2.39-0ubuntu2) ... 590s Processing triggers for sgml-base (1.31) ... 590s Setting up w3c-sgml-lib (1.3-3) ... 612s Setting up python3-biopython (1.81+dfsg-3) ... 613s Setting up python3-pyani (0.2.12-3) ... 613s Setting up autopkgtest-satdep (0) ... 617s (Reading database ... 63159 files and directories currently installed.) 617s Removing autopkgtest-satdep (0) ... 625s autopkgtest [22:17:35]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyani; print(pyani)" ; done 625s autopkgtest [22:17:35]: test autodep8-python3: [----------------------- 625s Testing with python3.12: 625s 625s autopkgtest [22:17:35]: test autodep8-python3: -----------------------] 626s autopkgtest [22:17:36]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 626s autodep8-python3 PASS (superficial) 626s autopkgtest [22:17:36]: @@@@@@@@@@@@@@@@@@@@ summary 626s run-unit-test PASS 626s autodep8-python3 PASS (superficial) 643s Creating nova instance adt-noble-s390x-python-pyani-20240317-220710-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240316.img (UUID 7afe023c-7cb8-41b6-91a7-c69e7d1e7c0d)... 643s Creating nova instance adt-noble-s390x-python-pyani-20240317-220710-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240316.img (UUID 7afe023c-7cb8-41b6-91a7-c69e7d1e7c0d)...