0s autopkgtest [14:26:41]: starting date and time: 2024-03-23 14:26:41+0000 0s autopkgtest [14:26:41]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [14:26:41]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.97w89xwu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python3-stdlib-extensions,src:gdbm --apt-upgrade python-pauvre --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-stdlib-extensions/3.12.2-3ubuntu1.1 gdbm/1.23-5.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-22.secgroup --name adt-noble-s390x-python-pauvre-20240323-142641-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 85s autopkgtest [14:28:06]: testbed dpkg architecture: s390x 85s autopkgtest [14:28:06]: testbed apt version: 2.7.12 85s autopkgtest [14:28:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 86s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 86s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 86s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 86s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3994 kB] 87s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 87s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [652 kB] 87s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 87s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 87s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 87s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4143 kB] 87s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 87s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB] 87s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 89s Fetched 9522 kB in 2s (3853 kB/s) 89s Reading package lists... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s Calculating upgrade... 92s The following packages will be REMOVED: 92s libgdbm6 92s The following NEW packages will be installed: 92s libgdbm6t64 92s The following packages will be upgraded: 92s python3-distutils python3-gdbm python3-lib2to3 93s 3 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 93s Need to get 268 kB of archives. 93s After this operation, 7168 B of additional disk space will be used. 93s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x python3-gdbm s390x 3.12.2-3ubuntu1.1 [19.0 kB] 93s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgdbm6t64 s390x 1.23-5.1 [36.4 kB] 93s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x python3-distutils all 3.12.2-3ubuntu1.1 [133 kB] 93s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB] 93s Fetched 268 kB in 0s (573 kB/s) 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 93s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_s390x.deb ... 93s Unpacking python3-gdbm:s390x (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 93s dpkg: libgdbm6:s390x: dependency problems, but removing anyway as you requested: 93s man-db depends on libgdbm6 (>= 1.16). 93s libperl5.38:s390x depends on libgdbm6 (>= 1.21). 93s libgdbm-compat4:s390x depends on libgdbm6 (>= 1.16). 93s 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 93s Removing libgdbm6:s390x (1.23-5) ... 93s Selecting previously unselected package libgdbm6t64:s390x. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52165 files and directories currently installed.) 93s Preparing to unpack .../libgdbm6t64_1.23-5.1_s390x.deb ... 93s Unpacking libgdbm6t64:s390x (1.23-5.1) ... 93s Preparing to unpack .../python3-distutils_3.12.2-3ubuntu1.1_all.deb ... 93s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 94s Preparing to unpack .../python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ... 94s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 94s Setting up libgdbm6t64:s390x (1.23-5.1) ... 94s Setting up python3-gdbm:s390x (3.12.2-3ubuntu1.1) ... 94s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ... 94s Setting up python3-distutils (3.12.2-3ubuntu1.1) ... 94s python3.12: can't get files for byte-compilation 94s Processing triggers for libc-bin (2.39-0ubuntu6) ... 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Unknown architecture, assuming PC-style ttyS0 95s sh: Attempting to set up Debian/Ubuntu apt sources automatically 95s sh: Distribution appears to be Ubuntu 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s eatmydata is already the newest version (131-1). 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 97s dbus is already the newest version (1.14.10-4ubuntu1). 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s rng-tools-debian is already the newest version (2.4). 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s The following packages will be REMOVED: 97s cloud-init* python3-configobj* python3-debconf* 98s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 98s After this operation, 3256 kB disk space will be freed. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 98s Removing cloud-init (24.1.2-0ubuntu1) ... 98s Removing python3-configobj (5.0.8-3) ... 98s Removing python3-debconf (1.5.86) ... 98s Processing triggers for man-db (2.12.0-3) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51782 files and directories currently installed.) 99s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 99s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 99s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 99s invoke-rc.d: policy-rc.d denied execution of try-restart. 99s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s linux-generic is already the newest version (6.8.0-11.11+1). 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 100s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 100s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 102s Reading package lists... 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s Calculating upgrade... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s autopkgtest [14:28:24]: rebooting testbed after setup commands that affected boot 117s autopkgtest [14:28:38]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 120s autopkgtest [14:28:41]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pauvre 122s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-pauvre 0.2.3-3 (dsc) [2485 B] 122s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-pauvre 0.2.3-3 (tar) [61.9 kB] 122s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-pauvre 0.2.3-3 (diff) [7968 B] 122s gpgv: Signature made Wed Sep 6 20:23:37 2023 UTC 122s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 122s gpgv: issuer "emollier@debian.org" 122s gpgv: Can't check signature: No public key 122s dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-3.dsc: no acceptable signature found 122s autopkgtest [14:28:43]: testing package python-pauvre version 0.2.3-3 122s autopkgtest [14:28:43]: build not needed 122s autopkgtest [14:28:43]: test run-unit-test: preparing testbed 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s Starting pkgProblemResolver with broken count: 0 124s Starting 2 pkgProblemResolver with broken count: 0 124s Done 124s The following additional packages will be installed: 124s blt fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 124s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 124s libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 124s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 124s liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 libpixman-1-0 libqhull-r8.0 124s libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 124s libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 124s libxss1 python-matplotlib-data python3-appdirs python3-biopython 124s python3-brotli python3-cairo python3-contourpy python3-cycler 124s python3-dateutil python3-decorator python3-fonttools python3-freetype 124s python3-fs python3-joblib python3-kiwisolver python3-lxml python3-lz4 124s python3-matplotlib python3-mpmath python3-nanoget-examples python3-numpy 124s python3-packaging python3-pandas python3-pandas-lib python3-pauvre 124s python3-pil python3-pil.imagetk python3-reportlab python3-rlpycairo 124s python3-scipy python3-sklearn python3-sklearn-lib python3-sympy 124s python3-threadpoolctl python3-tk python3-ufolib2 python3-unicodedata2 124s sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings 124s xfonts-utils xml-core 124s Suggested packages: 124s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 124s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 124s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 124s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 124s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 124s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 124s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 124s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 124s texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran python3-dev 124s python3-pytest python-pandas-doc python3-statsmodels python-pil-doc 124s pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel 124s rl-renderpm python-scipy-doc python3-dap python-sklearn-doc 124s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg sgml-base-doc 124s debhelper 124s Recommended packages: 124s javascript-common python-biopython-doc ncbi-blast+ python3-pytest 124s python3-simplejson python3-psutil python3-bs4 python3-cssselect 124s python3-html5lib python3-bottleneck python3-numexpr python3-odf 124s python3-openpyxl python3-tables python3-olefile g++ | c++-compiler 124s isympy-common 124s The following NEW packages will be installed: 124s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core 124s fonts-dejavu-extra fonts-dejavu-mono fonts-lyx fonts-urw-base35 libblas3 124s libcairo2 libdeflate0 libfontconfig1 libfontenc1 libfreetype6 libgfortran5 124s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 124s libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 124s libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 124s libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 124s libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 124s python3-appdirs python3-biopython python3-brotli python3-cairo 124s python3-contourpy python3-cycler python3-dateutil python3-decorator 124s python3-fonttools python3-freetype python3-fs python3-joblib 124s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 124s python3-mpmath python3-nanoget-examples python3-numpy python3-packaging 124s python3-pandas python3-pandas-lib python3-pauvre python3-pil 124s python3-pil.imagetk python3-reportlab python3-rlpycairo python3-scipy 124s python3-sklearn python3-sklearn-lib python3-sympy python3-threadpoolctl 124s python3-tk python3-ufolib2 python3-unicodedata2 sgml-base tk8.6-blt2.5 124s unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 124s 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. 124s Need to get 132 MB/132 MB of archives. 124s After this operation, 492 MB of additional disk space will be used. 124s Get:1 /tmp/autopkgtest.vuC5vK/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [724 B] 124s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x sgml-base all 1.31 [11.4 kB] 124s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 125s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 125s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 125s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 125s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libfontenc1 s390x 1:1.1.8-1 [14.8 kB] 125s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 125s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 125s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x xfonts-utils s390x 1:7.7+6build2 [94.8 kB] 125s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 125s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 125s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 125s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 125s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 125s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 125s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.14-1 [833 kB] 125s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-7 [661 kB] 125s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x blt s390x 2.5.3+dfsg-7 [4826 B] 125s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-extra all 2.37-8 [1947 kB] 126s Get:21 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lyx all 2.4.0~RC3-1 [170 kB] 126s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 126s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 126s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 126s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 126s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 126s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 126s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 126s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 126s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 126s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 126s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libimagequant0 s390x 2.18.0-1 [42.9 kB] 126s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 126s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 126s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 126s Get:36 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 126s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 126s Get:38 http://ftpmaster.internal/ubuntu noble/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1 [28.4 kB] 126s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB] 126s Get:40 http://ftpmaster.internal/ubuntu noble/universe s390x libqhull-r8.0 s390x 2020.2-6 [181 kB] 126s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libraqm0 s390x 0.10.1-1 [14.4 kB] 126s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 126s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 126s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 126s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 126s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libwebpdemux2 s390x 1.3.2-0.4 [12.4 kB] 126s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libwebpmux3 s390x 1.3.2-0.4 [25.4 kB] 126s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libxslt1.1 s390x 1.1.39-0exp1 [170 kB] 126s Get:49 http://ftpmaster.internal/ubuntu noble/universe s390x python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 126s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x python3-appdirs all 1.4.4-4 [10.9 kB] 126s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x python3-numpy s390x 1:1.24.2-2 [5137 kB] 126s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x python3-tk s390x 3.11.5-1 [114 kB] 126s Get:53 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pil.imagetk s390x 10.2.0-1 [9578 B] 126s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libopenjp2-7 s390x 2.5.0-2 [169 kB] 126s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x python3-pil s390x 10.2.0-1 [519 kB] 126s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x python3-cairo s390x 1.25.1-2 [150 kB] 126s Get:57 http://ftpmaster.internal/ubuntu noble/universe s390x python3-freetype all 2.4.0-1 [83.1 kB] 126s Get:58 http://ftpmaster.internal/ubuntu noble/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B] 126s Get:59 http://ftpmaster.internal/ubuntu noble/universe s390x python3-reportlab all 4.1.0-1 [683 kB] 126s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x xml-core all 0.19 [20.3 kB] 126s Get:61 http://ftpmaster.internal/ubuntu noble/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] 126s Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x python3-biopython s390x 1.81+dfsg-3 [2234 kB] 126s Get:63 http://ftpmaster.internal/ubuntu noble/universe s390x python3-brotli s390x 1.1.0-2 [383 kB] 126s Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x python3-contourpy s390x 1.0.7-1build2 [271 kB] 126s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x python3-cycler all 0.11.0-2 [8202 B] 126s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x python3-dateutil all 2.8.2-3 [79.2 kB] 126s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 126s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x python3-scipy s390x 1.11.4-6 [20.1 MB] 127s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 127s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x python3-mpmath all 1.2.1-3 [421 kB] 127s Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x python3-sympy all 1.12-7 [3966 kB] 127s Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x python3-fs all 2.4.16-3 [91.1 kB] 127s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x python3-lxml s390x 5.1.0-1 [2268 kB] 127s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x python3-lz4 s390x 4.0.2+dfsg-1build2 [26.8 kB] 127s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x python3-unicodedata2 s390x 15.1.0+ds-1 [370 kB] 127s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x unicode-data all 15.1.0-1 [8878 kB] 127s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x python3-fonttools s390x 4.46.0-1 [1668 kB] 127s Get:78 http://ftpmaster.internal/ubuntu noble/universe s390x python3-joblib all 1.3.2-1 [207 kB] 127s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x python3-kiwisolver s390x 1.4.4-2 [53.3 kB] 127s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x python3-packaging all 23.2-1 [40.6 kB] 127s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x python3-matplotlib s390x 3.6.3-1ubuntu3 [7346 kB] 127s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x python3-nanoget-examples all 1.19.3-1 [26.2 MB] 128s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pandas-lib s390x 2.1.4+dfsg-4ubuntu2 [8852 kB] 128s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 128s Get:85 http://ftpmaster.internal/ubuntu noble/universe s390x python3-threadpoolctl all 3.1.0-1 [21.3 kB] 128s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x python3-sklearn-lib s390x 1.4.1.post1+dfsg-1 [7370 kB] 128s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x python3-sklearn all 1.4.1.post1+dfsg-1 [2261 kB] 128s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pauvre all 0.2.3-3 [52.6 kB] 129s Fetched 132 MB in 4s (30.7 MB/s) 129s Selecting previously unselected package sgml-base. 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51727 files and directories currently installed.) 129s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 129s Unpacking sgml-base (1.31) ... 129s Selecting previously unselected package libtcl8.6:s390x. 129s Preparing to unpack .../01-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 129s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 129s Selecting previously unselected package libfreetype6:s390x. 129s Preparing to unpack .../02-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 129s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 129s Selecting previously unselected package fonts-dejavu-mono. 129s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 129s Unpacking fonts-dejavu-mono (2.37-8) ... 129s Selecting previously unselected package fonts-dejavu-core. 129s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 129s Unpacking fonts-dejavu-core (2.37-8) ... 129s Selecting previously unselected package libfontenc1:s390x. 129s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1_s390x.deb ... 129s Unpacking libfontenc1:s390x (1:1.1.8-1) ... 129s Selecting previously unselected package x11-common. 129s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu2_all.deb ... 129s Unpacking x11-common (1:7.7+23ubuntu2) ... 129s Selecting previously unselected package xfonts-encodings. 129s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 129s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 129s Selecting previously unselected package xfonts-utils. 129s Preparing to unpack .../08-xfonts-utils_1%3a7.7+6build2_s390x.deb ... 129s Unpacking xfonts-utils (1:7.7+6build2) ... 129s Selecting previously unselected package fonts-urw-base35. 129s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 129s Unpacking fonts-urw-base35 (20200910-8) ... 129s Selecting previously unselected package fontconfig-config. 129s Preparing to unpack .../10-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 130s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 130s Selecting previously unselected package libfontconfig1:s390x. 130s Preparing to unpack .../11-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 130s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 130s Selecting previously unselected package libxrender1:s390x. 130s Preparing to unpack .../12-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 130s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 130s Selecting previously unselected package libxft2:s390x. 130s Preparing to unpack .../13-libxft2_2.3.6-1_s390x.deb ... 130s Unpacking libxft2:s390x (2.3.6-1) ... 130s Selecting previously unselected package libxss1:s390x. 130s Preparing to unpack .../14-libxss1_1%3a1.2.3-1build2_s390x.deb ... 130s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 130s Selecting previously unselected package libtk8.6:s390x. 130s Preparing to unpack .../15-libtk8.6_8.6.14-1_s390x.deb ... 130s Unpacking libtk8.6:s390x (8.6.14-1) ... 130s Selecting previously unselected package tk8.6-blt2.5. 130s Preparing to unpack .../16-tk8.6-blt2.5_2.5.3+dfsg-7_s390x.deb ... 130s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 130s Selecting previously unselected package blt. 130s Preparing to unpack .../17-blt_2.5.3+dfsg-7_s390x.deb ... 130s Unpacking blt (2.5.3+dfsg-7) ... 130s Selecting previously unselected package fonts-dejavu-extra. 130s Preparing to unpack .../18-fonts-dejavu-extra_2.37-8_all.deb ... 130s Unpacking fonts-dejavu-extra (2.37-8) ... 130s Selecting previously unselected package fonts-lyx. 130s Preparing to unpack .../19-fonts-lyx_2.4.0~RC3-1_all.deb ... 130s Unpacking fonts-lyx (2.4.0~RC3-1) ... 130s Selecting previously unselected package libblas3:s390x. 130s Preparing to unpack .../20-libblas3_3.12.0-3_s390x.deb ... 130s Unpacking libblas3:s390x (3.12.0-3) ... 130s Selecting previously unselected package libpixman-1-0:s390x. 130s Preparing to unpack .../21-libpixman-1-0_0.42.2-1_s390x.deb ... 130s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 130s Selecting previously unselected package libxcb-render0:s390x. 130s Preparing to unpack .../22-libxcb-render0_1.15-1_s390x.deb ... 130s Unpacking libxcb-render0:s390x (1.15-1) ... 130s Selecting previously unselected package libxcb-shm0:s390x. 130s Preparing to unpack .../23-libxcb-shm0_1.15-1_s390x.deb ... 130s Unpacking libxcb-shm0:s390x (1.15-1) ... 130s Selecting previously unselected package libcairo2:s390x. 130s Preparing to unpack .../24-libcairo2_1.18.0-1_s390x.deb ... 130s Unpacking libcairo2:s390x (1.18.0-1) ... 130s Selecting previously unselected package libdeflate0:s390x. 130s Preparing to unpack .../25-libdeflate0_1.19-1_s390x.deb ... 130s Unpacking libdeflate0:s390x (1.19-1) ... 130s Selecting previously unselected package libgfortran5:s390x. 130s Preparing to unpack .../26-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 130s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 130s Selecting previously unselected package libgomp1:s390x. 130s Preparing to unpack .../27-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 130s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 130s Selecting previously unselected package libgraphite2-3:s390x. 130s Preparing to unpack .../28-libgraphite2-3_1.3.14-2_s390x.deb ... 130s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 130s Selecting previously unselected package libharfbuzz0b:s390x. 130s Preparing to unpack .../29-libharfbuzz0b_8.3.0-2_s390x.deb ... 130s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 130s Selecting previously unselected package libimagequant0:s390x. 130s Preparing to unpack .../30-libimagequant0_2.18.0-1_s390x.deb ... 130s Unpacking libimagequant0:s390x (2.18.0-1) ... 130s Selecting previously unselected package libjpeg-turbo8:s390x. 130s Preparing to unpack .../31-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 130s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 130s Selecting previously unselected package libjpeg8:s390x. 130s Preparing to unpack .../32-libjpeg8_8c-2ubuntu11_s390x.deb ... 130s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 130s Selecting previously unselected package libjs-jquery. 130s Preparing to unpack .../33-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 130s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 130s Selecting previously unselected package libjs-jquery-ui. 130s Preparing to unpack .../34-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 130s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 130s Selecting previously unselected package liblapack3:s390x. 130s Preparing to unpack .../35-liblapack3_3.12.0-3_s390x.deb ... 130s Unpacking liblapack3:s390x (3.12.0-3) ... 130s Selecting previously unselected package liblbfgsb0:s390x. 130s Preparing to unpack .../36-liblbfgsb0_3.0+dfsg.4-1_s390x.deb ... 130s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1) ... 130s Selecting previously unselected package liblcms2-2:s390x. 130s Preparing to unpack .../37-liblcms2-2_2.14-2_s390x.deb ... 130s Unpacking liblcms2-2:s390x (2.14-2) ... 130s Selecting previously unselected package libqhull-r8.0:s390x. 130s Preparing to unpack .../38-libqhull-r8.0_2020.2-6_s390x.deb ... 130s Unpacking libqhull-r8.0:s390x (2020.2-6) ... 130s Selecting previously unselected package libraqm0:s390x. 130s Preparing to unpack .../39-libraqm0_0.10.1-1_s390x.deb ... 130s Unpacking libraqm0:s390x (0.10.1-1) ... 130s Selecting previously unselected package libsharpyuv0:s390x. 130s Preparing to unpack .../40-libsharpyuv0_1.3.2-0.4_s390x.deb ... 130s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 130s Selecting previously unselected package libjbig0:s390x. 130s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 130s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 130s Selecting previously unselected package libwebp7:s390x. 130s Preparing to unpack .../42-libwebp7_1.3.2-0.4_s390x.deb ... 130s Unpacking libwebp7:s390x (1.3.2-0.4) ... 130s Selecting previously unselected package libtiff6:s390x. 130s Preparing to unpack .../43-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 130s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 130s Selecting previously unselected package libwebpdemux2:s390x. 130s Preparing to unpack .../44-libwebpdemux2_1.3.2-0.4_s390x.deb ... 130s Unpacking libwebpdemux2:s390x (1.3.2-0.4) ... 130s Selecting previously unselected package libwebpmux3:s390x. 130s Preparing to unpack .../45-libwebpmux3_1.3.2-0.4_s390x.deb ... 130s Unpacking libwebpmux3:s390x (1.3.2-0.4) ... 130s Selecting previously unselected package libxslt1.1:s390x. 130s Preparing to unpack .../46-libxslt1.1_1.1.39-0exp1_s390x.deb ... 130s Unpacking libxslt1.1:s390x (1.1.39-0exp1) ... 130s Selecting previously unselected package python-matplotlib-data. 130s Preparing to unpack .../47-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 130s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 131s Selecting previously unselected package python3-appdirs. 131s Preparing to unpack .../48-python3-appdirs_1.4.4-4_all.deb ... 131s Unpacking python3-appdirs (1.4.4-4) ... 131s Selecting previously unselected package python3-numpy. 131s Preparing to unpack .../49-python3-numpy_1%3a1.24.2-2_s390x.deb ... 131s Unpacking python3-numpy (1:1.24.2-2) ... 131s Selecting previously unselected package python3-tk:s390x. 131s Preparing to unpack .../50-python3-tk_3.11.5-1_s390x.deb ... 131s Unpacking python3-tk:s390x (3.11.5-1) ... 131s Selecting previously unselected package python3-pil.imagetk:s390x. 131s Preparing to unpack .../51-python3-pil.imagetk_10.2.0-1_s390x.deb ... 131s Unpacking python3-pil.imagetk:s390x (10.2.0-1) ... 131s Selecting previously unselected package libopenjp2-7:s390x. 131s Preparing to unpack .../52-libopenjp2-7_2.5.0-2_s390x.deb ... 131s Unpacking libopenjp2-7:s390x (2.5.0-2) ... 131s Selecting previously unselected package python3-pil:s390x. 131s Preparing to unpack .../53-python3-pil_10.2.0-1_s390x.deb ... 131s Unpacking python3-pil:s390x (10.2.0-1) ... 131s Selecting previously unselected package python3-cairo. 131s Preparing to unpack .../54-python3-cairo_1.25.1-2_s390x.deb ... 131s Unpacking python3-cairo (1.25.1-2) ... 131s Selecting previously unselected package python3-freetype. 131s Preparing to unpack .../55-python3-freetype_2.4.0-1_all.deb ... 131s Unpacking python3-freetype (2.4.0-1) ... 131s Selecting previously unselected package python3-rlpycairo. 131s Preparing to unpack .../56-python3-rlpycairo_0.3.0-3_all.deb ... 131s Unpacking python3-rlpycairo (0.3.0-3) ... 131s Selecting previously unselected package python3-reportlab. 131s Preparing to unpack .../57-python3-reportlab_4.1.0-1_all.deb ... 131s Unpacking python3-reportlab (4.1.0-1) ... 131s Selecting previously unselected package xml-core. 131s Preparing to unpack .../58-xml-core_0.19_all.deb ... 131s Unpacking xml-core (0.19) ... 131s Selecting previously unselected package w3c-sgml-lib. 131s Preparing to unpack .../59-w3c-sgml-lib_1.3-3_all.deb ... 131s Unpacking w3c-sgml-lib (1.3-3) ... 131s Selecting previously unselected package python3-biopython. 131s Preparing to unpack .../60-python3-biopython_1.81+dfsg-3_s390x.deb ... 131s Unpacking python3-biopython (1.81+dfsg-3) ... 131s Selecting previously unselected package python3-brotli. 131s Preparing to unpack .../61-python3-brotli_1.1.0-2_s390x.deb ... 131s Unpacking python3-brotli (1.1.0-2) ... 131s Selecting previously unselected package python3-contourpy. 131s Preparing to unpack .../62-python3-contourpy_1.0.7-1build2_s390x.deb ... 131s Unpacking python3-contourpy (1.0.7-1build2) ... 131s Selecting previously unselected package python3-cycler. 131s Preparing to unpack .../63-python3-cycler_0.11.0-2_all.deb ... 131s Unpacking python3-cycler (0.11.0-2) ... 131s Selecting previously unselected package python3-dateutil. 131s Preparing to unpack .../64-python3-dateutil_2.8.2-3_all.deb ... 131s Unpacking python3-dateutil (2.8.2-3) ... 131s Selecting previously unselected package python3-decorator. 131s Preparing to unpack .../65-python3-decorator_5.1.1-5_all.deb ... 131s Unpacking python3-decorator (5.1.1-5) ... 131s Selecting previously unselected package python3-scipy. 131s Preparing to unpack .../66-python3-scipy_1.11.4-6_s390x.deb ... 131s Unpacking python3-scipy (1.11.4-6) ... 132s Selecting previously unselected package python3-ufolib2. 132s Preparing to unpack .../67-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 132s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 132s Selecting previously unselected package python3-mpmath. 132s Preparing to unpack .../68-python3-mpmath_1.2.1-3_all.deb ... 132s Unpacking python3-mpmath (1.2.1-3) ... 132s Selecting previously unselected package python3-sympy. 132s Preparing to unpack .../69-python3-sympy_1.12-7_all.deb ... 132s Unpacking python3-sympy (1.12-7) ... 132s Selecting previously unselected package python3-fs. 132s Preparing to unpack .../70-python3-fs_2.4.16-3_all.deb ... 132s Unpacking python3-fs (2.4.16-3) ... 133s Selecting previously unselected package python3-lxml:s390x. 133s Preparing to unpack .../71-python3-lxml_5.1.0-1_s390x.deb ... 133s Unpacking python3-lxml:s390x (5.1.0-1) ... 133s Selecting previously unselected package python3-lz4. 133s Preparing to unpack .../72-python3-lz4_4.0.2+dfsg-1build2_s390x.deb ... 133s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 133s Selecting previously unselected package python3-unicodedata2. 133s Preparing to unpack .../73-python3-unicodedata2_15.1.0+ds-1_s390x.deb ... 133s Unpacking python3-unicodedata2 (15.1.0+ds-1) ... 133s Selecting previously unselected package unicode-data. 133s Preparing to unpack .../74-unicode-data_15.1.0-1_all.deb ... 133s Unpacking unicode-data (15.1.0-1) ... 133s Selecting previously unselected package python3-fonttools. 133s Preparing to unpack .../75-python3-fonttools_4.46.0-1_s390x.deb ... 133s Unpacking python3-fonttools (4.46.0-1) ... 133s Selecting previously unselected package python3-joblib. 133s Preparing to unpack .../76-python3-joblib_1.3.2-1_all.deb ... 133s Unpacking python3-joblib (1.3.2-1) ... 133s Selecting previously unselected package python3-kiwisolver. 133s Preparing to unpack .../77-python3-kiwisolver_1.4.4-2_s390x.deb ... 133s Unpacking python3-kiwisolver (1.4.4-2) ... 133s Selecting previously unselected package python3-packaging. 133s Preparing to unpack .../78-python3-packaging_23.2-1_all.deb ... 133s Unpacking python3-packaging (23.2-1) ... 133s Selecting previously unselected package python3-matplotlib. 133s Preparing to unpack .../79-python3-matplotlib_3.6.3-1ubuntu3_s390x.deb ... 133s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... 133s Selecting previously unselected package python3-nanoget-examples. 133s Preparing to unpack .../80-python3-nanoget-examples_1.19.3-1_all.deb ... 133s Unpacking python3-nanoget-examples (1.19.3-1) ... 133s Selecting previously unselected package python3-pandas-lib:s390x. 133s Preparing to unpack .../81-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_s390x.deb ... 133s Unpacking python3-pandas-lib:s390x (2.1.4+dfsg-4ubuntu2) ... 134s Selecting previously unselected package python3-pandas. 134s Preparing to unpack .../82-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 134s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 134s Selecting previously unselected package python3-threadpoolctl. 134s Preparing to unpack .../83-python3-threadpoolctl_3.1.0-1_all.deb ... 134s Unpacking 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auto mode 136s Setting up python3-packaging (23.2-1) ... 136s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 136s Setting up python3-brotli (1.1.0-2) ... 136s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 136s Setting up python3-cycler (0.11.0-2) ... 136s Setting up libimagequant0:s390x (2.18.0-1) ... 136s Setting up fonts-dejavu-mono (2.37-8) ... 136s Setting up python3-kiwisolver (1.4.4-2) ... 136s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 136s Setting up fonts-dejavu-core (2.37-8) ... 136s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 136s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 136s Setting up libwebp7:s390x (1.3.2-0.4) ... 136s Setting up fonts-dejavu-extra (2.37-8) ... 136s Setting up libxslt1.1:s390x (1.1.39-0exp1) ... 136s Setting up python3-nanoget-examples (1.19.3-1) ... 136s Setting up libopenjp2-7:s390x (2.5.0-2) ... 136s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 136s Setting up python3-dateutil (2.8.2-3) ... 137s Setting up sgml-base (1.31) ... 137s Setting up libxss1:s390x (1:1.2.3-1build2) ... 137s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 137s Setting up python3-mpmath (1.2.1-3) ... 137s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ... 137s Setting up libwebpmux3:s390x (1.3.2-0.4) ... 137s Setting up python3-appdirs (1.4.4-4) ... 137s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 137s Setting up python3-sympy (1.12-7) ... 143s Setting up liblapack3:s390x (3.12.0-3) ... 143s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 143s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 143s Setting up libwebpdemux2:s390x (1.3.2-0.4) ... 143s Setting up python3-freetype (2.4.0-1) ... 143s Setting up xfonts-utils (1:7.7+6build2) ... 143s Setting up python3-fs (2.4.16-3) ... 143s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 143s Setting up libraqm0:s390x (0.10.1-1) ... 143s Setting up 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... 155s Setting up python3-tk:s390x (3.11.5-1) ... 155s Setting up python3-pil.imagetk:s390x (10.2.0-1) ... 155s Setting up python3-rlpycairo (0.3.0-3) ... 155s Setting up python3-reportlab (4.1.0-1) ... 156s Setting up python3-fonttools (4.46.0-1) ... 157s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 157s Setting up python3-matplotlib (3.6.3-1ubuntu3) ... 158s Processing triggers for libc-bin (2.39-0ubuntu6) ... 158s Processing triggers for man-db (2.12.0-3) ... 159s Processing triggers for sgml-base (1.31) ... 159s Setting up w3c-sgml-lib (1.3-3) ... 183s Setting up python3-biopython (1.81+dfsg-3) ... 184s Setting up python3-pauvre (0.2.3-3) ... 184s /usr/lib/python3/dist-packages/pauvre/gfftools.py:178: SyntaxWarning: invalid escape sequence '\ ' 184s """ plots a lff patch 184s /usr/lib/python3/dist-packages/pauvre/gfftools.py:259: SyntaxWarning: invalid escape sequence '\ ' 184s """ plots a rff patch 184s /usr/lib/python3/dist-packages/pauvre/synplot.py:531: SyntaxWarning: invalid escape sequence '\i' 184s seq_name = "$\it{{{0}}}$".format(gff.species) 184s Setting up autopkgtest-satdep (0) ... 187s (Reading database ... 63441 files and directories currently installed.) 187s Removing autopkgtest-satdep (0) ... 188s autopkgtest [14:29:49]: test run-unit-test: [----------------------- 188s 188s #git clone https://github.com/wdecoster/nanotest.git 188s 188s pauvre -h 189s usage: pauvre [-h] [-v] 189s {browser,custommargin,marginplot,redwood,stats,synplot} ... 189s 189s options: 189s -h, --help show this help message and exit 189s -v, --version Installed pauvre version 189s 189s [sub-commands]: 189s {browser,custommargin,marginplot,redwood,stats,synplot} 189s browser an adaptable genome browser with various track types 189s custommargin plot custom marginal histograms of tab-delimited files 189s marginplot plot a marginal histogram of a fastq file 189s redwood make a redwood plot from a bam file 189s stats outputs stats from a fastq file 189s synplot make a synteny plot from a gff file, protein 189s alignment, and partition file 189s 189s pauvre marginplot -h 189s usage: pauvre marginplot [-h] [-q] [--dpi dpi] [-f FASTQ] 189s [--fileform STRING [STRING ...]] 189s [--filt_maxlen FILT_MAXLEN] 189s [--filt_maxqual FILT_MAXQUAL] 189s [--filt_minlen FILT_MINLEN] 189s [--filt_minqual FILT_MINQUAL] [--kmerdf KMERDF] [-n] 189s [--no_timestamp] [-o BASENAME] 189s [--plot_maxlen PLOT_MAXLEN] 189s [--plot_maxqual PLOT_MAXQUAL] 189s [--plot_minlen PLOT_MINLEN] 189s [--plot_minqual PLOT_MINQUAL] [--lengthbin LENGTHBIN] 189s [--qualbin QUALBIN] [-t TITLE] [-y] 189s 189s options: 189s -h, --help show this help message and exit 189s -q, --quiet Do not output warnings to stderr 189s --dpi dpi Change the dpi from the default 600 if you need it 189s higher 189s -f FASTQ, --fastq FASTQ 189s The input FASTQ file. 189s --fileform STRING [STRING ...] 189s Which output format would you like? Def.=png 189s --filt_maxlen FILT_MAXLEN 189s This sets the max read length filter reads. 189s --filt_maxqual FILT_MAXQUAL 189s This sets the max mean read quality to filter reads. 189s --filt_minlen FILT_MINLEN 189s This sets the min read length to filter reads. 189s --filt_minqual FILT_MINQUAL 189s This sets the min mean read quality to filter reads. 189s --kmerdf KMERDF Pass the filename of a data matrix if you would like 189s to plot read length versus number of kmers in that 189s read. The data matrix is a tab-separated text file 189s with columns "id length numks and kmers", where: 189s = read id = the length of the read = 189s the number of canonical kmers in the read = a 189s list representation of kmers ie ['GAT', 'GTA'] 189s -n, --no_transparent Specify this option if you don't want a transparent 189s background. Default is on. 189s --no_timestamp Turn off time stamps in the filename output. 189s -o BASENAME, --output_base_name BASENAME 189s Specify a base name for the output file(s). The input 189s file base name is the default. 189s --plot_maxlen PLOT_MAXLEN 189s Sets the maximum viewing area in the length dimension. 189s --plot_maxqual PLOT_MAXQUAL 189s Sets the maximum viewing area in the quality 189s dimension. 189s --plot_minlen PLOT_MINLEN 189s Sets the minimum viewing area in the length dimension. 189s --plot_minqual PLOT_MINQUAL 189s Sets the minimum viewing area in the quality 189s dimension. 189s --lengthbin LENGTHBIN 189s This sets the bin size to use for length. 189s --qualbin QUALBIN This sets the bin size to use for quality 189s -t TITLE, --title TITLE 189s This sets the title for the whole plot. Use --title 189s "Crustacean's DNA read quality" if you need single 189s quote or apostrophe inside title. 189s -y, --add-yaxes Add Y-axes to both marginal histograms. 189s pauvre marginplot -f nanotest/reads.fastq.gz 191s Keeping reads that satisfy: length >= 0 and meanQual >= 0 192s # Fastq stats for reads.fastq.gz, reads >= 0bp 192s numReads: 371 192s %totalNumReads: 100.00 192s numBasepairs: 8611871 192s %totalBasepairs: 100.00 192s meanLen: 23212.590296495957 192s medianLen: 9390.0 192s minLen: 212 192s maxLen: 393431 192s N50: 60395 192s L50: 36 192s 192s # Fastq stats for reads.fastq.gz, reads >= 1000bp 192s numReads: 349 192s %totalNumReads: 94.07 192s numBasepairs: 8599196 192s %totalBasepairs: 99.85 192s meanLen: 24639.530085959886 192s medianLen: 10585.0 192s minLen: 1009 192s maxLen: 393431 192s N50: 60395 192s L50: 36 192s 192s # Fastq stats for reads.fastq.gz, reads >= 5000bp 192s numReads: 246 192s %totalNumReads: 66.31 192s numBasepairs: 8296771 192s %totalBasepairs: 96.34 192s meanLen: 33726.71138211382 192s medianLen: 17146.0 192s minLen: 5082 192s maxLen: 393431 192s N50: 61111 192s L50: 33 192s 192s # Fastq stats for reads.fastq.gz, reads >= 10000bp 192s numReads: 178 192s %totalNumReads: 47.98 192s numBasepairs: 7817574 192s %totalBasepairs: 90.78 192s meanLen: 43918.95505617977 192s medianLen: 25216.5 192s minLen: 10192 192s maxLen: 393431 192s N50: 67193 192s L50: 30 192s 192s 192s Basepairs >= bin by mean PHRED and length 192s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 192s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 192s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 192s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 192s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 192s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 192s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 192s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 192s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 192s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 192s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 192s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 192s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 192s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 192s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 192s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 192s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 192s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 192s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 192s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 192s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 192s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 192s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 192s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 192s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 192s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 192s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 192s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 192s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 192s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 192s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 192s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 192s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 192s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 192s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 192s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 192s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 192s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 192s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 192s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 192s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 192s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 192s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 192s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 192s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 192s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 192s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 192s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 192s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 192s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 192s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 192s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 192s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 192s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 192s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 192s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 192s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 192s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 192s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 192s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 192s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 192s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 192s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 192s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 192s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 192s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 192s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 192s 140000 1699582 1699582 1378920 930176 341725 0 0 0 192s 160000 1699582 1699582 1378920 930176 341725 0 0 0 192s 180000 1699582 1699582 1378920 930176 341725 0 0 0 192s 200000 1504562 1504562 1183900 735156 341725 0 0 0 192s 220000 1504562 1504562 1183900 735156 341725 0 0 0 192s 240000 1055818 1055818 735156 735156 341725 0 0 0 192s 260000 1055818 1055818 735156 735156 341725 0 0 0 192s 280000 1055818 1055818 735156 735156 341725 0 0 0 192s 300000 1055818 1055818 735156 735156 341725 0 0 0 192s 320000 1055818 1055818 735156 735156 341725 0 0 0 192s 340000 735156 735156 735156 735156 341725 0 0 0 192s 360000 393431 393431 393431 393431 0 0 0 0 192s 380000 393431 393431 393431 393431 0 0 0 0 192s 400000 0 0 0 0 0 0 0 0 192s 192s Number of reads >= bin by mean Phred+Len 192s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 192s 0 371 321 277 207 114 49 2 0 192s 250 369 320 276 206 113 48 2 0 192s 500 363 315 273 203 112 47 2 0 192s 750 355 311 270 201 111 46 2 0 192s 1000 349 307 266 197 108 44 2 0 192s 1500 341 302 263 194 106 44 2 0 192s 2000 322 284 245 179 98 42 2 0 192s 2500 308 271 233 172 94 40 2 0 192s 3000 296 264 227 167 93 40 2 0 192s 3500 282 251 215 156 84 36 2 0 192s 4000 268 237 201 144 79 36 2 0 192s 4500 256 226 192 140 77 34 2 0 192s 5000 246 216 184 134 73 33 2 0 192s 5500 236 208 176 130 72 32 1 0 192s 6000 226 199 167 121 68 30 1 0 192s 6500 215 190 160 115 65 28 0 0 192s 7000 209 185 156 113 64 28 0 0 192s 7500 203 179 151 110 62 26 0 0 192s 8000 197 174 146 106 59 25 0 0 192s 8500 191 170 142 103 57 25 0 0 192s 9000 188 167 140 101 56 24 0 0 192s 9500 182 161 137 100 55 24 0 0 192s 10000 178 157 135 99 54 24 0 0 192s 11000 169 150 129 94 51 24 0 0 192s 12000 160 142 122 90 48 22 0 0 192s 13000 144 128 111 84 46 21 0 0 192s 14000 138 123 107 80 44 19 0 0 192s 15000 134 119 103 76 41 18 0 0 192s 16000 130 116 100 74 41 18 0 0 192s 17000 123 109 94 69 38 17 0 0 192s 18000 119 105 90 65 34 16 0 0 192s 19000 115 102 87 63 33 15 0 0 192s 20000 111 98 84 61 33 15 0 0 192s 21000 105 93 80 58 30 13 0 0 192s 22000 100 90 77 56 28 12 0 0 192s 23000 96 86 73 53 26 11 0 0 192s 24000 94 84 71 51 26 11 0 0 192s 25000 90 80 68 49 25 11 0 0 192s 26000 88 78 67 49 25 11 0 0 192s 27000 84 74 64 47 23 10 0 0 192s 28000 81 71 61 46 22 9 0 0 192s 29000 76 66 57 42 21 8 0 0 192s 30000 71 61 52 38 20 8 0 0 192s 31000 69 59 50 36 19 7 0 0 192s 32000 67 57 48 34 18 7 0 0 192s 33000 66 56 47 33 18 7 0 0 192s 34000 66 56 47 33 18 7 0 0 192s 35000 64 55 46 32 18 7 0 0 192s 36000 61 52 45 31 18 7 0 0 192s 37000 58 49 44 30 17 7 0 0 192s 38000 58 49 44 30 17 7 0 0 192s 39000 57 49 44 30 17 7 0 0 192s 40000 57 49 44 30 17 7 0 0 192s 45000 52 46 42 29 17 7 0 0 192s 50000 47 42 38 25 16 6 0 0 192s 55000 43 38 34 21 13 4 0 0 192s 60000 36 31 28 18 10 3 0 0 192s 65000 32 28 25 16 9 2 0 0 192s 70000 28 25 23 14 9 2 0 0 192s 75000 23 21 19 12 7 2 0 0 192s 80000 21 19 18 11 7 2 0 0 192s 85000 20 18 17 11 7 2 0 0 192s 90000 17 16 15 10 6 2 0 0 192s 95000 17 16 15 10 6 2 0 0 192s 100000 14 13 12 8 4 1 0 0 192s 120000 10 9 8 5 2 0 0 0 192s 140000 6 6 5 3 1 0 0 0 192s 160000 6 6 5 3 1 0 0 0 192s 180000 6 6 5 3 1 0 0 0 192s 200000 5 5 4 2 1 0 0 0 192s 220000 5 5 4 2 1 0 0 0 192s 240000 3 3 2 2 1 0 0 0 192s 260000 3 3 2 2 1 0 0 0 192s 280000 3 3 2 2 1 0 0 0 192s 300000 3 3 2 2 1 0 0 0 192s 320000 3 3 2 2 1 0 0 0 192s 340000 2 2 2 2 1 0 0 0 192s 360000 1 1 1 1 0 0 0 0 192s 380000 1 1 1 1 0 0 0 0 192s 400000 0 0 0 0 0 0 0 0 192s plotting in the following window: 192s 0 <= Q-score (x-axis) <= 14.0 192s 0 <= length (y-axis) <= 223383 193s 193s pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000 195s Keeping reads that satisfy: length >= 0 and meanQual >= 0 and length <= 30000 196s plotting in the following window: 196s 0 <= Q-score (x-axis) <= 14.0 196s 0 <= length (y-axis) <= 29294 197s # Fastq stats for reads.fastq.gz, reads >= 0bp 197s numReads: 300 197s %totalNumReads: 100.00 197s numBasepairs: 2729844 197s %totalBasepairs: 100.00 197s meanLen: 9099.48 197s medianLen: 6204.5 197s minLen: 212 197s maxLen: 29590 197s N50: 15222 197s L50: 61 197s 197s # Fastq stats for reads.fastq.gz, reads >= 1000bp 197s numReads: 278 197s %totalNumReads: 92.67 197s numBasepairs: 2717169 197s %totalBasepairs: 99.54 197s meanLen: 9773.989208633093 197s medianLen: 6910.0 197s minLen: 1009 197s maxLen: 29590 197s N50: 15222 197s L50: 61 197s 197s # Fastq stats for reads.fastq.gz, reads >= 5000bp 197s numReads: 175 197s %totalNumReads: 58.33 197s numBasepairs: 2414744 197s %totalBasepairs: 88.46 197s meanLen: 13798.537142857143 197s medianLen: 12063.0 197s minLen: 5082 197s maxLen: 29590 197s N50: 17307 197s L50: 52 197s 197s # Fastq stats for reads.fastq.gz, reads >= 10000bp 197s numReads: 107 197s %totalNumReads: 35.67 197s numBasepairs: 1935547 197s %totalBasepairs: 70.90 197s meanLen: 18089.22429906542 197s medianLen: 16881.0 197s minLen: 10192 197s maxLen: 29590 197s N50: 20295 197s L50: 39 197s 197s 197s Basepairs >= bin by mean PHRED and length 197s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 197s 0 2729844 2468957 2119643 1556484 858972 393665 11781 0 197s 250 2729407 2468745 2119431 1556272 858760 393453 11781 0 197s 500 2726928 2466658 2118130 1554971 858291 392984 11781 0 197s 750 2721984 2464209 2116192 1553563 857617 392310 11781 0 197s 1000 2717169 2460965 2112948 1550319 855138 390635 11781 0 197s 1500 2707362 2454822 2109268 1546639 852794 390635 11781 0 197s 2000 2672887 2422266 2076712 1519238 838240 387346 11781 0 197s 2500 2641814 2393384 2050243 1503478 829208 382949 11781 0 197s 3000 2609116 2374168 2033904 1489726 826376 382949 11781 0 197s 3500 2564269 2332442 1995335 1454265 797280 370584 11781 0 197s 4000 2512068 2280241 1943134 1409238 778266 370584 11781 0 197s 4500 2462190 2234445 1905756 1392691 769886 362204 11781 0 197s 5000 2414744 2186999 1867774 1364464 750909 357457 11781 0 197s 5500 2362072 2144943 1825718 1343414 745461 352009 6333 0 197s 6000 2305333 2093889 1774664 1292360 722519 340437 6333 0 197s 6500 2236325 2037511 1730586 1254474 703348 327653 0 0 197s 7000 2195737 2003551 1703356 1240708 696434 327653 0 0 197s 7500 2152591 1960405 1667528 1219336 682352 313571 0 0 197s 8000 2106380 1921709 1628832 1188281 658986 305742 0 0 197s 8500 2056889 1888763 1595886 1163795 642742 305742 0 0 197s 9000 2030952 1862826 1578483 1146392 633884 296884 0 0 197s 9500 1974999 1806873 1550171 1136895 624387 296884 0 0 197s 10000 1935547 1767421 1530498 1126915 614407 296884 0 0 197s 11000 1840006 1693127 1467100 1074138 582873 296884 0 0 197s 12000 1736297 1600554 1386518 1027634 547567 273563 0 0 197s 13000 1534978 1424405 1249051 952931 523214 261500 0 0 197s 14000 1453681 1356704 1195131 899011 495787 234073 0 0 197s 15000 1395434 1298457 1136884 840764 451857 219542 0 0 197s 16000 1334255 1252372 1090799 809901 451857 219542 0 0 197s 17000 1217331 1135448 990860 726799 401685 202825 0 0 197s 18000 1146730 1064847 920259 656198 331084 185250 0 0 197s 19000 1072466 1008770 864182 618776 312433 166599 0 0 197s 20000 993686 929990 805391 579331 312433 166599 0 0 197s 21000 870897 827698 723394 518156 251258 126075 0 0 197s 22000 763379 763379 659075 475682 208784 104960 0 0 197s 23000 673728 673728 569424 408210 163731 82719 0 0 197s 24000 627024 627024 522720 361506 163731 82719 0 0 197s 25000 528646 528646 448453 312153 138944 82719 0 0 197s 26000 478213 478213 423121 312153 138944 82719 0 0 197s 27000 372570 372570 343949 259378 86169 56621 0 0 197s 28000 289458 289458 260837 231544 58335 28787 0 0 197s 29000 147115 147115 147115 117822 29548 0 0 0 197s 30000 0 0 0 0 0 0 0 0 197s 197s Number of reads >= bin by mean Phred+Len 197s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 197s 0 300 260 225 169 94 41 2 0 197s 250 298 259 224 168 93 40 2 0 197s 500 292 254 221 165 92 39 2 0 197s 750 284 250 218 163 91 38 2 0 197s 1000 278 246 214 159 88 36 2 0 197s 1500 270 241 211 156 86 36 2 0 197s 2000 251 223 193 141 78 34 2 0 197s 2500 237 210 181 134 74 32 2 0 197s 3000 225 203 175 129 73 32 2 0 197s 3500 211 190 163 118 64 28 2 0 197s 4000 197 176 149 106 59 28 2 0 197s 4500 185 165 140 102 57 26 2 0 197s 5000 175 155 132 96 53 25 2 0 197s 5500 165 147 124 92 52 24 1 0 197s 6000 155 138 115 83 48 22 1 0 197s 6500 144 129 108 77 45 20 0 0 197s 7000 138 124 104 75 44 20 0 0 197s 7500 132 118 99 72 42 18 0 0 197s 8000 126 113 94 68 39 17 0 0 197s 8500 120 109 90 65 37 17 0 0 197s 9000 117 106 88 63 36 16 0 0 197s 9500 111 100 85 62 35 16 0 0 197s 10000 107 96 83 61 34 16 0 0 197s 11000 98 89 77 56 31 16 0 0 197s 12000 89 81 70 52 28 14 0 0 197s 13000 73 67 59 46 26 13 0 0 197s 14000 67 62 55 42 24 11 0 0 197s 15000 63 58 51 38 21 10 0 0 197s 16000 59 55 48 36 21 10 0 0 197s 17000 52 48 42 31 18 9 0 0 197s 18000 48 44 38 27 14 8 0 0 197s 19000 44 41 35 25 13 7 0 0 197s 20000 40 37 32 23 13 7 0 0 197s 21000 34 32 28 20 10 5 0 0 197s 22000 29 29 25 18 8 4 0 0 197s 23000 25 25 21 15 6 3 0 0 197s 24000 23 23 19 13 6 3 0 0 197s 25000 19 19 16 11 5 3 0 0 197s 26000 17 17 15 11 5 3 0 0 197s 27000 13 13 12 9 3 2 0 0 197s 28000 10 10 9 8 2 1 0 0 197s 29000 5 5 5 4 1 0 0 0 197s 30000 0 0 0 0 0 0 0 0 197s 197s pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg 199s Keeping reads that satisfy: length >= 0 and meanQual >= 7.0 199s # Fastq stats for reads.fastq.gz, reads >= 0bp 199s numReads: 371 199s %totalNumReads: 100.00 199s numBasepairs: 8611871 199s %totalBasepairs: 100.00 199s meanLen: 23212.590296495957 199s medianLen: 9390.0 199s minLen: 212 199s maxLen: 393431 199s N50: 60395 199s L50: 36 199s 199s # Fastq stats for reads.fastq.gz, reads >= 1000bp 199s numReads: 349 199s %totalNumReads: 94.07 199s numBasepairs: 8599196 199s %totalBasepairs: 99.85 199s meanLen: 24639.530085959886 199s medianLen: 10585.0 199s minLen: 1009 199s maxLen: 393431 199s N50: 60395 199s L50: 36 199s 199s # Fastq stats for reads.fastq.gz, reads >= 5000bp 199s numReads: 246 199s %totalNumReads: 66.31 199s numBasepairs: 8296771 199s %totalBasepairs: 96.34 199s meanLen: 33726.71138211382 199s medianLen: 17146.0 199s minLen: 5082 199s maxLen: 393431 199s N50: 61111 199s L50: 33 199s 199s # Fastq stats for reads.fastq.gz, reads >= 10000bp 199s numReads: 178 199s %totalNumReads: 47.98 199s numBasepairs: 7817574 199s %totalBasepairs: 90.78 199s meanLen: 43918.95505617977 199s medianLen: 25216.5 199s minLen: 10192 199s maxLen: 393431 199s N50: 67193 199s L50: 30 199s 199s 199s Basepairs >= bin by mean PHRED and length 199s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 199s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 199s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 199s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 199s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 199s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 199s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 199s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 199s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 199s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 199s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 199s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 199s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 199s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 199s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 199s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 199s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 199s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 199s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 199s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 199s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 199s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 199s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 199s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 199s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 199s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 199s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 199s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 199s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 199s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 199s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 199s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 199s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 199s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 199s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 199s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 199s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 199s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 199s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 199s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 199s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 199s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 199s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 199s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 199s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 199s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 199s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 199s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 199s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 199s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 199s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 199s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 199s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 199s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 199s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 199s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 199s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 199s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 199s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 199s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 199s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 199s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 199s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 199s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 199s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 199s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 199s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 199s 140000 1699582 1699582 1378920 930176 341725 0 0 0 199s 160000 1699582 1699582 1378920 930176 341725 0 0 0 199s 180000 1699582 1699582 1378920 930176 341725 0 0 0 199s 200000 1504562 1504562 1183900 735156 341725 0 0 0 199s 220000 1504562 1504562 1183900 735156 341725 0 0 0 199s 240000 1055818 1055818 735156 735156 341725 0 0 0 199s 260000 1055818 1055818 735156 735156 341725 0 0 0 199s 280000 1055818 1055818 735156 735156 341725 0 0 0 199s 300000 1055818 1055818 735156 735156 341725 0 0 0 199s 320000 1055818 1055818 735156 735156 341725 0 0 0 199s 340000 735156 735156 735156 735156 341725 0 0 0 199s 360000 393431 393431 393431 393431 0 0 0 0 199s 380000 393431 393431 393431 393431 0 0 0 0 199s 400000 0 0 0 0 0 0 0 0 199s 199s Number of reads >= bin by mean Phred+Len 199s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 199s 0 371 321 277 207 114 49 2 0 199s 250 369 320 276 206 113 48 2 0 199s 500 363 315 273 203 112 47 2 0 199s 750 355 311 270 201 111 46 2 0 199s 1000 349 307 266 197 108 44 2 0 199s 1500 341 302 263 194 106 44 2 0 199s 2000 322 284 245 179 98 42 2 0 199s 2500 308 271 233 172 94 40 2 0 199s 3000 296 264 227 167 93 40 2 0 199s 3500 282 251 215 156 84 36 2 0 199s 4000 268 237 201 144 79 36 2 0 199s 4500 256 226 192 140 77 34 2 0 199s 5000 246 216 184 134 73 33 2 0 199s 5500 236 208 176 130 72 32 1 0 199s 6000 226 199 167 121 68 30 1 0 199s 6500 215 190 160 115 65 28 0 0 199s 7000 209 185 156 113 64 28 0 0 199s 7500 203 179 151 110 62 26 0 0 199s 8000 197 174 146 106 59 25 0 0 199s 8500 191 170 142 103 57 25 0 0 199s 9000 188 167 140 101 56 24 0 0 199s 9500 182 161 137 100 55 24 0 0 199s 10000 178 157 135 99 54 24 0 0 199s 11000 169 150 129 94 51 24 0 0 199s 12000 160 142 122 90 48 22 0 0 199s 13000 144 128 111 84 46 21 0 0 199s 14000 138 123 107 80 44 19 0 0 199s 15000 134 119 103 76 41 18 0 0 199s 16000 130 116 100 74 41 18 0 0 199s 17000 123 109 94 69 38 17 0 0 199s 18000 119 105 90 65 34 16 0 0 199s 19000 115 102 87 63 33 15 0 0 199s 20000 111 98 84 61 33 15 0 0 199s 21000 105 93 80 58 30 13 0 0 199s 22000 100 90 77 56 28 12 0 0 199s 23000 96 86 73 53 26 11 0 0 199s 24000 94 84 71 51 26 11 0 0 199s 25000 90 80 68 49 25 11 0 0 199s 26000 88 78 67 49 25 11 0 0 199s 27000 84 74 64 47 23 10 0 0 199s 28000 81 71 61 46 22 9 0 0 199s 29000 76 66 57 42 21 8 0 0 199s 30000 71 61 52 38 20 8 0 0 199s 31000 69 59 50 36 19 7 0 0 199s 32000 67 57 48 34 18 7 0 0 199s 33000 66 56 47 33 18 7 0 0 199s 34000 66 56 47 33 18 7 0 0 199s 35000 64 55 46 32 18 7 0 0 199s 36000 61 52 45 31 18 7 0 0 199s 37000 58 49 44 30 17 7 0 0 199s 38000 58 49 44 30 17 7 0 0 199s 39000 57 49 44 30 17 7 0 0 199s 40000 57 49 44 30 17 7 0 0 199s 45000 52 46 42 29 17 7 0 0 199s 50000 47 42 38 25 16 6 0 0 199s 55000 43 38 34 21 13 4 0 0 199s 60000 36 31 28 18 10 3 0 0 199s 65000 32 28 25 16 9 2 0 0 199s 70000 28 25 23 14 9 2 0 0 199s 75000 23 21 19 12 7 2 0 0 199s 80000 21 19 18 11 7 2 0 0 199s 85000 20 18 17 11 7 2 0 0 199s 90000 17 16 15 10 6 2 0 0 199s 95000 17 16 15 10 6 2 0 0 199s 100000 14 13 12 8 4 1 0 0 199s 120000 10 9 8 5 2 0 0 0 199s 140000 6 6 5 3 1 0 0 0 199s 160000 6 6 5 3 1 0 0 0 199s 180000 6 6 5 3 1 0 0 0 199s 200000 5 5 4 2 1 0 0 0 199s 220000 5 5 4 2 1 0 0 0 199s 240000 3 3 2 2 1 0 0 0 199s 260000 3 3 2 2 1 0 0 0 199s 280000 3 3 2 2 1 0 0 0 199s 300000 3 3 2 2 1 0 0 0 199s 320000 3 3 2 2 1 0 0 0 199s 340000 2 2 2 2 1 0 0 0 199s 360000 1 1 1 1 0 0 0 0 199s 380000 1 1 1 1 0 0 0 0 199s 400000 0 0 0 0 0 0 0 0 200s plotting in the following window: 200s 0 <= Q-score (x-axis) <= 14.0 200s 0 <= length (y-axis) <= 223383 200s 200s 200s pauvre stats -h 201s usage: pauvre stats [-h] [-q] [-f FASTQ] [-H] [--filt_maxlen FILT_MAXLEN] 201s [--filt_maxqual FILT_MAXQUAL] [--filt_minlen FILT_MINLEN] 201s [--filt_minqual FILT_MINQUAL] 201s 201s options: 201s -h, --help show this help message and exit 201s -q, --quiet Do not output warnings to stderr 201s -f FASTQ, --fastq FASTQ 201s The input FASTQ file. 201s -H, --histogram Make a histogram of the read lengths and saves it to a 201s new file 201s --filt_maxlen FILT_MAXLEN 201s This sets the max read length filter reads. 201s --filt_maxqual FILT_MAXQUAL 201s This sets the max mean read quality to filter reads. 201s --filt_minlen FILT_MINLEN 201s This sets the min read length to filter reads. 201s --filt_minqual FILT_MINQUAL 201s This sets the min mean read quality to filter reads. 201s pauvre stats -f nanotest/reads.fastq.gz 203s # Fastq stats for reads.fastq.gz, reads >= 0bp 203s numReads: 371 203s %totalNumReads: 100.00 203s numBasepairs: 8611871 203s %totalBasepairs: 100.00 203s meanLen: 23212.590296495957 203s medianLen: 9390.0 203s minLen: 212 203s maxLen: 393431 203s N50: 60395 203s L50: 36 203s 203s # Fastq stats for reads.fastq.gz, reads >= 1000bp 203s numReads: 349 203s %totalNumReads: 94.07 203s numBasepairs: 8599196 203s %totalBasepairs: 99.85 203s meanLen: 24639.530085959886 203s medianLen: 10585.0 203s minLen: 1009 203s maxLen: 393431 203s N50: 60395 203s L50: 36 203s 203s # Fastq stats for reads.fastq.gz, reads >= 5000bp 203s numReads: 246 203s %totalNumReads: 66.31 203s numBasepairs: 8296771 203s %totalBasepairs: 96.34 203s meanLen: 33726.71138211382 203s medianLen: 17146.0 203s minLen: 5082 203s maxLen: 393431 203s N50: 61111 203s L50: 33 203s 203s # Fastq stats for reads.fastq.gz, reads >= 10000bp 203s numReads: 178 203s %totalNumReads: 47.98 203s numBasepairs: 7817574 203s %totalBasepairs: 90.78 203s meanLen: 43918.95505617977 203s medianLen: 25216.5 203s minLen: 10192 203s maxLen: 393431 203s N50: 67193 203s L50: 30 203s 203s 203s Basepairs >= bin by mean PHRED and length 203s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 203s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 203s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 203s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 203s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 203s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 203s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 203s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 203s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 203s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 203s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 203s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 203s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 203s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 203s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 203s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 203s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 203s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 203s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 203s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 203s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 203s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 203s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 203s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 203s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 203s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 203s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 203s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 203s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 203s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 203s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 203s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 203s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 203s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 203s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 203s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 203s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 203s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 203s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 203s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 203s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 203s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 203s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 203s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 203s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 203s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 203s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 203s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 203s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 203s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 203s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 203s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 203s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 203s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 203s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 203s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 203s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 203s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 203s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 203s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 203s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 203s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 203s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 203s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 203s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 203s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 203s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 203s 140000 1699582 1699582 1378920 930176 341725 0 0 0 203s 160000 1699582 1699582 1378920 930176 341725 0 0 0 203s 180000 1699582 1699582 1378920 930176 341725 0 0 0 203s 200000 1504562 1504562 1183900 735156 341725 0 0 0 203s 220000 1504562 1504562 1183900 735156 341725 0 0 0 203s 240000 1055818 1055818 735156 735156 341725 0 0 0 203s 260000 1055818 1055818 735156 735156 341725 0 0 0 203s 280000 1055818 1055818 735156 735156 341725 0 0 0 203s 300000 1055818 1055818 735156 735156 341725 0 0 0 203s 320000 1055818 1055818 735156 735156 341725 0 0 0 203s 340000 735156 735156 735156 735156 341725 0 0 0 203s 360000 393431 393431 393431 393431 0 0 0 0 203s 380000 393431 393431 393431 393431 0 0 0 0 203s 400000 0 0 0 0 0 0 0 0 203s 203s Number of reads >= bin by mean Phred+Len 203s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 203s 0 371 321 277 207 114 49 2 0 203s 250 369 320 276 206 113 48 2 0 203s 500 363 315 273 203 112 47 2 0 203s 750 355 311 270 201 111 46 2 0 203s 1000 349 307 266 197 108 44 2 0 203s 1500 341 302 263 194 106 44 2 0 203s 2000 322 284 245 179 98 42 2 0 203s 2500 308 271 233 172 94 40 2 0 203s 3000 296 264 227 167 93 40 2 0 203s 3500 282 251 215 156 84 36 2 0 203s 4000 268 237 201 144 79 36 2 0 203s 4500 256 226 192 140 77 34 2 0 203s 5000 246 216 184 134 73 33 2 0 203s 5500 236 208 176 130 72 32 1 0 203s 6000 226 199 167 121 68 30 1 0 203s 6500 215 190 160 115 65 28 0 0 203s 7000 209 185 156 113 64 28 0 0 203s 7500 203 179 151 110 62 26 0 0 203s 8000 197 174 146 106 59 25 0 0 203s 8500 191 170 142 103 57 25 0 0 203s 9000 188 167 140 101 56 24 0 0 203s 9500 182 161 137 100 55 24 0 0 203s 10000 178 157 135 99 54 24 0 0 203s 11000 169 150 129 94 51 24 0 0 203s 12000 160 142 122 90 48 22 0 0 203s 13000 144 128 111 84 46 21 0 0 203s 14000 138 123 107 80 44 19 0 0 203s 15000 134 119 103 76 41 18 0 0 203s 16000 130 116 100 74 41 18 0 0 203s 17000 123 109 94 69 38 17 0 0 203s 18000 119 105 90 65 34 16 0 0 203s 19000 115 102 87 63 33 15 0 0 203s 20000 111 98 84 61 33 15 0 0 203s 21000 105 93 80 58 30 13 0 0 203s 22000 100 90 77 56 28 12 0 0 203s 23000 96 86 73 53 26 11 0 0 203s 24000 94 84 71 51 26 11 0 0 203s 25000 90 80 68 49 25 11 0 0 203s 26000 88 78 67 49 25 11 0 0 203s 27000 84 74 64 47 23 pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12 203s 10 0 0 203s 28000 81 71 61 46 22 9 0 0 203s 29000 76 66 57 42 21 8 0 0 203s 30000 71 61 52 38 20 8 0 0 203s 31000 69 59 50 36 19 7 0 0 203s 32000 67 57 48 34 18 7 0 0 203s 33000 66 56 47 33 18 7 0 0 203s 34000 66 56 47 33 18 7 0 0 203s 35000 64 55 46 32 18 7 0 0 203s 36000 61 52 45 31 18 7 0 0 203s 37000 58 49 44 30 17 7 0 0 203s 38000 58 49 44 30 17 7 0 0 203s 39000 57 49 44 30 17 7 0 0 203s 40000 57 49 44 30 17 7 0 0 203s 45000 52 46 42 29 17 7 0 0 203s 50000 47 42 38 25 16 6 0 0 203s 55000 43 38 34 21 13 4 0 0 203s 60000 36 31 28 18 10 3 0 0 203s 65000 32 28 25 16 9 2 0 0 203s 70000 28 25 23 14 9 2 0 0 203s 75000 23 21 19 12 7 2 0 0 203s 80000 21 19 18 11 7 2 0 0 203s 85000 20 18 17 11 7 2 0 0 203s 90000 17 16 15 10 6 2 0 0 203s 95000 17 16 15 10 6 2 0 0 203s 100000 14 13 12 8 4 1 0 0 203s 120000 10 9 8 5 2 0 0 0 203s 140000 6 6 5 3 1 0 0 0 203s 160000 6 6 5 3 1 0 0 0 203s 180000 6 6 5 3 1 0 0 0 203s 200000 5 5 4 2 1 0 0 0 203s 220000 5 5 4 2 1 0 0 0 203s 240000 3 3 2 2 1 0 0 0 203s 260000 3 3 2 2 1 0 0 0 203s 280000 3 3 2 2 1 0 0 0 203s 300000 3 3 2 2 1 0 0 0 203s 320000 3 3 2 2 1 0 0 0 203s 340000 2 2 2 2 1 0 0 0 203s 360000 1 1 1 1 0 0 0 0 203s 380000 1 1 1 1 0 0 0 0 203s 400000 0 0 0 0 0 0 0 0 203s 205s # Fastq stats for reads.fastq.gz, reads >= 0bp 205s numReads: 371 205s %totalNumReads: 100.00 205s numBasepairs: 8611871 205s %totalBasepairs: 100.00 205s meanLen: 23212.590296495957 205s medianLen: 9390.0 205s minLen: 212 205s maxLen: 393431 205s N50: 60395 205s L50: 36 205s 205s # Fastq stats for reads.fastq.gz, reads >= 1000bp 205s numReads: 349 205s %totalNumReads: 94.07 205s numBasepairs: 8599196 205s %totalBasepairs: 99.85 205s meanLen: 24639.530085959886 205s medianLen: 10585.0 205s minLen: 1009 205s maxLen: 393431 205s N50: 60395 205s L50: 36 205s 205s # Fastq stats for reads.fastq.gz, reads >= 5000bp 205s numReads: 246 205s %totalNumReads: 66.31 205s numBasepairs: 8296771 205s %totalBasepairs: 96.34 205s meanLen: 33726.71138211382 205s medianLen: 17146.0 205s minLen: 5082 205s maxLen: 393431 205s N50: 61111 205s L50: 33 205s 205s # Fastq stats for reads.fastq.gz, reads >= 10000bp 205s numReads: 178 205s %totalNumReads: 47.98 205s numBasepairs: 7817574 205s %totalBasepairs: 90.78 205s meanLen: 43918.95505617977 205s medianLen: 25216.5 205s minLen: 10192 205s maxLen: 393431 205s N50: 67193 205s L50: 30 205s 205s 205s Basepairs >= bin by mean PHRED and length 205s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 205s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 205s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 205s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 205s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 205s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 205s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 205s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 205s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 205s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 205s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 205s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 205s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 205s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 205s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 205s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 205s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 205s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 205s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 205s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 205s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 205s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 205s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 205s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 205s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 205s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 205s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 205s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 205s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 205s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 205s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 205s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 205s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 205s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 205s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 205s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 205s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 205s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 205s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 205s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 205s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 205s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 205s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 205s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 205s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 205s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 205s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 205s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 205s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 205s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 205s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 205s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 205s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 205s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 205s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 205s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 205s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 205s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 205s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 205s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 205s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 205s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 205s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 205s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 205s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 205s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 205s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 205s 140000 1699582 1699582 1378920 930176 341725 0 0 0 205s 160000 1699582 1699582 1378920 930176 341725 0 0 0 205s 180000 1699582 1699582 1378920 930176 341725 0 0 0 205s 200000 1504562 1504562 1183900 735156 341725 0 0 0 205s 220000 1504562 1504562 1183900 735156 341725 0 0 0 205s 240000 1055818 1055818 735156 735156 341725 0 0 0 205s 260000 1055818 1055818 735156 735156 341725 0 0 0 205s 280000 1055818 1055818 735156 735156 341725 0 0 0 205s 300000 1055818 1055818 735156 735156 341725 0 0 0 205s 320000 1055818 1055818 735156 735156 341725 0 0 0 205s 340000 735156 735156 735156 735156 341725 0 0 0 205s 360000 393431 393431 393431 393431 0 0 0 0 205s 380000 393431 393431 393431 393431 0 0 0 0 205s 400000 0 0 0 0 0 0 0 0 205s 205s Number of reads >= bin by mean Phred+Len 205s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 205s 0 371 321 277 207 114 49 2 0 205s 250 369 320 276 206 113 48 2 0 205s 500 363 315 273 203 112 47 2 0 205s 750 355 311 270 201 111 46 2 0 205s 1000 349 307 266 197 108 44 2 0 205s 1500 341 302 263 194 106 44 2 0 205s 2000 322 284 245 179 98 42 2 0 205s 2500 308 271 233 172 94 40 2 0 205s 3000 296 264 227 167 93 40 2 0 205s 3500 282 251 215 156 84 36 2 0 205s 4000 268 237 201 144 79 36 2 0 205s 4500 256 226 192 140 77 34 2 0 205s 5000 246 216 184 134 73 33 2 0 205s 5500 236 208 176 130 72 32 1 0 205s 6000 226 199 167 121 68 30 1 0 205s 6500 215 190 160 115 65 28 0 0 205s 7000 209 185 156 113 64 28 0 0 205s 7500 203 179 151 110 62 26 0 0 205s 8000 197 174 146 106 59 25 0 0 205s 8500 191 170 142 103 57 25 0 0 205s 9000 188 167 140 101 56 24 0 0 205s 9500 182 161 137 100 55 24 0 0 205s 10000 178 157 135 99 54 24 0 0 205s 11000 169 150 129 94 51 24 0 0 205s 12000 160 142 122 90 48 22 0 0 205s 13000 144 128 111 84 46 21 0 0 205s 14000 138 123 107 80 44 19 0 0 205s 15000 134 119 103 76 41 18 0 0 205s 16000 130 116 100 74 41 18 0 0 205s 17000 123 109 94 69 38 17 0 0 205s 18000 119 105 90 65 34 16 0 0 205s 19000 115 102 87 63 33 15 0 0 205s 20000 111 98 84 61 33 15 0 0 205s 21000 105 93 80 58 30 13 0 0 205s 22000 100 90 77 56 28 12 0 0 205s 23000 96 86 73 53 26 11 0 0 205s 24000 94 84 71 51 26 11 0 0 205s 25000 90 80 68 49 25 11 0 0 205s 26000 88 78 67 49 25 11 0 0 205s 27000 84 74 64 47 23 10 0 0 205s 28000 81 71 61 46 22 9 0 0 205s 29000 76 66 57 42 21 8 0 0 205s 30000 71 61 52 38 20 8 0 0 205s 31000 69 59 50 36 19 7 0 0 205s 32000 67 57 48 34 18 7 0 0 205s 33000 66 56 47 33 18 7 0 0 205s 34000 66 56 47 33 18 7 0 0 205s 35000 64 55 46 32 18 7 0 0 205s 36000 61 52 45 31 18 7 0 0 205s 37000 58 49 44 30 17 7 0 0 205s 38000 58 49 44 30 17 7 0 0 205s 39000 57 49 44 30 17 7 0 0 205s 40000 57 49 44 30 17 7 0 0 205s 45000 52 46 42 29 17 7 0 0 205s 50000 47 42 38 25 16 6 0 0 205s 55000 43 38 34 21 13 4 0 0 205s 60000 36 31 28 18 10 3 0 0 205s 65000 32 28 25 16 9 2 0 0 205s 70000 28 25 23 14 9 2 0 0 205s 75000 23 21 19 12 7 2 0 0 205s 80000 21 19 18 11 7 2 0 0 205s 85000 20 18 17 11 7 2 0 0 205s 90000 17 16 15 10 6 2 0 0 205s 95000 17 16 15 10 6 2 0 0 205s 100000 14 13 12 8 4 1 0 0 205s 120000 10 9 8 5 2 0 0 0 205s 140000 6 6 5 3 1 0 0 0 205s 160000 6 6 5 3 1 0 0 0 205s 180000 6 6 5 3 1 0 0 0 205s 200000 5 5 4 2 1 0 0 0 205s 220000 5 5 4 2 1 0 0 0 205s 240000 3 3 2 2 1 0 0 0 205s 260000 3 3 2 2 1 0 0 0 205s 280000 3 3 2 2 1 0 0 0 205s 300000 3 3 2 2 1 0 0 0 205s 320000 3 3 2 2 1 0 0 0 205s 340000 2 2 2 2 1 0 0 0 205s 360000 1 1 1 1 0 0 0 0 205s 380000 1 1 1 1 0 0 0 0 205s 400000 0 0 0 0 0 0 0 0 205s 206s autopkgtest [14:30:07]: test run-unit-test: -----------------------] 206s run-unit-test PASS 206s autopkgtest [14:30:07]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 207s autopkgtest [14:30:08]: @@@@@@@@@@@@@@@@@@@@ summary 207s run-unit-test PASS 218s Creating nova instance adt-noble-s390x-python-pauvre-20240323-142641-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240323.img (UUID 15bd59e1-c29b-45d7-aba1-73ff15182fb5)...