0s autopkgtest [04:33:11]: starting date and time: 2024-03-23 04:33:11+0000 0s autopkgtest [04:33:11]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [04:33:11]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.auwx37ak/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python-pysam --apt-upgrade python-nanoget --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python-pysam/0.22.0+ds-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-10.secgroup --name adt-noble-s390x-python-nanoget-20240323-043311-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 82s autopkgtest [04:34:33]: testbed dpkg architecture: s390x 82s autopkgtest [04:34:33]: testbed apt version: 2.7.12 82s autopkgtest [04:34:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 83s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 83s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.7 kB] 83s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 83s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 83s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4001 kB] 84s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [661 kB] 85s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 85s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 85s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 85s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4154 kB] 85s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 85s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [47.5 kB] 85s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 87s Fetched 9552 kB in 3s (2768 kB/s) 87s Reading package lists... 89s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Calculating upgrade... 90s The following packages will be upgraded: 90s libbsd0 90s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Need to get 46.7 kB of archives. 90s After this operation, 0 B of additional disk space will be used. 90s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1 [46.7 kB] 91s Fetched 46.7 kB in 0s (116 kB/s) 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 91s Preparing to unpack .../libbsd0_0.12.1-1_s390x.deb ... 91s Unpacking libbsd0:s390x (0.12.1-1) over (0.11.8-1) ... 91s Setting up libbsd0:s390x (0.12.1-1) ... 91s Processing triggers for libc-bin (2.39-0ubuntu2) ... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Unknown architecture, assuming PC-style ttyS0 92s sh: Attempting to set up Debian/Ubuntu apt sources automatically 92s sh: Distribution appears to be Ubuntu 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s eatmydata is already the newest version (131-1). 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s dbus is already the newest version (1.14.10-4ubuntu1). 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s rng-tools-debian is already the newest version (2.4). 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s The following packages will be REMOVED: 94s cloud-init* python3-configobj* python3-debconf* 94s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 94s After this operation, 3256 kB disk space will be freed. 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 94s Removing cloud-init (24.1.2-0ubuntu1) ... 95s Removing python3-configobj (5.0.8-3) ... 95s Removing python3-debconf (1.5.86) ... 95s Processing triggers for man-db (2.12.0-3) ... 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51781 files and directories currently installed.) 95s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 95s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 95s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 95s invoke-rc.d: policy-rc.d denied execution of try-restart. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s linux-generic is already the newest version (6.8.0-11.11+1). 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] 97s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 97s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 98s Fetched 255 kB in 1s (414 kB/s) 98s Reading package lists... 98s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Calculating upgrade... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s autopkgtest [04:34:50]: rebooting testbed after setup commands that affected boot 114s autopkgtest [04:35:05]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 117s autopkgtest [04:35:08]: @@@@@@@@@@@@@@@@@@@@ apt-source python-nanoget 131s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-nanoget 1.19.3-1 (dsc) [1637 B] 131s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-nanoget 1.19.3-1 (tar) [21.5 kB] 131s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-nanoget 1.19.3-1 (diff) [26.2 MB] 132s gpgv: Signature made Sun Feb 4 12:05:57 2024 UTC 132s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 132s gpgv: Can't check signature: No public key 132s dpkg-source: warning: cannot verify inline signature for ./python-nanoget_1.19.3-1.dsc: no acceptable signature found 132s autopkgtest [04:35:23]: testing package python-nanoget version 1.19.3-1 134s autopkgtest [04:35:25]: build not needed 135s autopkgtest [04:35:26]: test run-unit-test: preparing testbed 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Starting pkgProblemResolver with broken count: 1 136s Starting 2 pkgProblemResolver with broken count: 1 136s Investigating (0) python3-nanoget:s390x < none -> 1.19.3-1 @un puN Ib > 136s Broken python3-nanoget:s390x Depends on python3-biopython:s390x < none | 1.81+dfsg-3 @un uH > 136s Considering python3-biopython:s390x 1 as a solution to python3-nanoget:s390x 0 136s Re-Instated libblas3:s390x 136s Re-Instated libgfortran5:s390x 136s Re-Instated liblapack3:s390x 136s Re-Instated python3-numpy:s390x 136s Re-Instated libfreetype6:s390x 136s Re-Instated libgomp1:s390x 136s Re-Instated libimagequant0:s390x 136s Re-Instated libjpeg-turbo8:s390x 136s Re-Instated libjpeg8:s390x 136s Re-Instated liblcms2-2:s390x 136s Re-Instated libopenjp2-7:s390x 136s Re-Instated libgraphite2-3:s390x 136s Re-Instated libharfbuzz0b:s390x 136s Re-Instated libraqm0:s390x 136s Re-Instated libdeflate0:s390x 136s Re-Instated libjbig0:s390x 136s Re-Instated libsharpyuv0:s390x 136s Re-Instated libwebp7:s390x 136s Re-Instated libtiff6:s390x 136s Re-Instated libwebpdemux2:s390x 136s Re-Instated libwebpmux3:s390x 136s Re-Instated python3-pil:s390x 136s Re-Instated fonts-dejavu-mono:s390x 136s Re-Instated fonts-dejavu-core:s390x 136s Re-Instated fontconfig-config:s390x 136s Re-Instated libfontconfig1:s390x 136s Re-Instated libpixman-1-0:s390x 136s Re-Instated libxcb-render0:s390x 136s Re-Instated libxcb-shm0:s390x 136s Re-Instated libxrender1:s390x 136s Re-Instated libcairo2:s390x 136s Re-Instated python3-cairo:s390x 136s Re-Instated python3-freetype:s390x 136s Re-Instated python3-rlpycairo:s390x 136s Re-Instated fonts-dejavu-extra:s390x 136s Re-Instated libfontenc1:s390x 136s Re-Instated x11-common:s390x 136s Re-Instated xfonts-encodings:s390x 136s Re-Instated xfonts-utils:s390x 136s Re-Instated fonts-urw-base35:s390x 136s Re-Instated python3-reportlab:s390x 136s Re-Instated sgml-base:s390x 136s Re-Instated xml-core:s390x 136s Re-Instated w3c-sgml-lib:s390x 136s Re-Instated python3-biopython:s390x 136s Broken python3-nanoget:s390x Depends on python3-pandas:s390x < none | 2.1.4+dfsg-4ubuntu2 @un uH > (>= 2.0.0) 136s Considering python3-pandas:s390x 0 as a solution to python3-nanoget:s390x 0 136s Re-Instated python3-dateutil:s390x 136s Re-Instated python3-pandas-lib:s390x 136s Re-Instated python3-pandas:s390x 136s Broken python3-nanoget:s390x Depends on python3-pysam:s390x < none @un H > 136s Broken python3-nanoget:s390x Depends on python3-nanomath:s390x < none | 1.2.1+ds-1 @un uH > 136s Considering python3-nanomath:s390x 1 as a solution to python3-nanoget:s390x 0 136s Re-Instated python3-wrapt:s390x 136s Re-Instated python3-deprecated:s390x 136s Re-Instated python3-nanomath:s390x 136s Done 136s Some packages could not be installed. This may mean that you have 136s requested an impossible situation or if you are using the unstable 136s distribution that some required packages have not yet been created 136s or been moved out of Incoming. 136s The following information may help to resolve the situation: 136s 136s The following packages have unmet dependencies: 136s python3-nanoget : Depends: python3-pysam but it is not installable 136s E: Unable to correct problems, you have held broken packages. 136s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Starting pkgProblemResolver with broken count: 1 137s Starting 2 pkgProblemResolver with broken count: 1 137s Investigating (0) python3-nanoget:s390x < none -> 1.19.3-1 @un puN Ib > 137s Broken python3-nanoget:s390x Depends on python3-biopython:s390x < none | 1.81+dfsg-3 @un uH > 137s Considering python3-biopython:s390x 1 as a solution to python3-nanoget:s390x 0 137s Re-Instated libblas3:s390x 137s Re-Instated libgfortran5:s390x 137s Re-Instated liblapack3:s390x 137s Re-Instated python3-numpy:s390x 137s Re-Instated libfreetype6:s390x 137s Re-Instated libgomp1:s390x 137s Re-Instated libimagequant0:s390x 137s Re-Instated libjpeg-turbo8:s390x 137s Re-Instated libjpeg8:s390x 137s Re-Instated liblcms2-2:s390x 137s Re-Instated libopenjp2-7:s390x 137s Re-Instated libgraphite2-3:s390x 137s Re-Instated libharfbuzz0b:s390x 137s Re-Instated libraqm0:s390x 137s Re-Instated libdeflate0:s390x 137s Re-Instated libjbig0:s390x 137s Re-Instated libsharpyuv0:s390x 137s Re-Instated libwebp7:s390x 137s Re-Instated libtiff6:s390x 137s Re-Instated libwebpdemux2:s390x 137s Re-Instated libwebpmux3:s390x 137s Re-Instated python3-pil:s390x 137s Re-Instated fonts-dejavu-mono:s390x 137s Re-Instated fonts-dejavu-core:s390x 137s Re-Instated fontconfig-config:s390x 137s Re-Instated libfontconfig1:s390x 137s Re-Instated libpixman-1-0:s390x 138s Re-Instated libxcb-render0:s390x 138s Re-Instated libxcb-shm0:s390x 138s Re-Instated libxrender1:s390x 138s Re-Instated libcairo2:s390x 138s Re-Instated python3-cairo:s390x 138s Re-Instated python3-freetype:s390x 138s Re-Instated python3-rlpycairo:s390x 138s Re-Instated fonts-dejavu-extra:s390x 138s Re-Instated libfontenc1:s390x 138s Re-Instated x11-common:s390x 138s Re-Instated xfonts-encodings:s390x 138s Re-Instated xfonts-utils:s390x 138s Re-Instated fonts-urw-base35:s390x 138s Re-Instated python3-reportlab:s390x 138s Re-Instated sgml-base:s390x 138s Re-Instated xml-core:s390x 138s Re-Instated w3c-sgml-lib:s390x 138s Re-Instated python3-biopython:s390x 138s Broken python3-nanoget:s390x Depends on python3-pandas:s390x < none | 2.1.4+dfsg-4ubuntu2 @un uH > (>= 2.0.0) 138s Considering python3-pandas:s390x 0 as a solution to python3-nanoget:s390x 0 138s Re-Instated python3-dateutil:s390x 138s Re-Instated python3-pandas-lib:s390x 138s Re-Instated python3-pandas:s390x 138s Broken python3-nanoget:s390x Depends on python3-pysam:s390x < none @un H > 138s Broken python3-nanoget:s390x Depends on python3-nanomath:s390x < none | 1.2.1+ds-1 @un uH > 138s Considering python3-nanomath:s390x 1 as a solution to python3-nanoget:s390x 0 138s Re-Instated python3-wrapt:s390x 138s Re-Instated python3-deprecated:s390x 138s Re-Instated python3-nanomath:s390x 138s Done 138s Some packages could not be installed. This may mean that you have 138s requested an impossible situation or if you are using the unstable 138s distribution that some required packages have not yet been created 138s or been moved out of Incoming. 138s The following information may help to resolve the situation: 138s 138s The following packages have unmet dependencies: 138s python3-nanoget : Depends: python3-pysam but it is not installable 138s E: Unable to correct problems, you have held broken packages. 138s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Starting pkgProblemResolver with broken count: 1 138s Starting 2 pkgProblemResolver with broken count: 1 138s Investigating (0) python3-nanoget:s390x < none -> 1.19.3-1 @un puN Ib > 138s Broken python3-nanoget:s390x Depends on python3-biopython:s390x < none | 1.81+dfsg-3 @un uH > 138s Considering python3-biopython:s390x 1 as a solution to python3-nanoget:s390x 9999 138s Re-Instated libblas3:s390x 138s Re-Instated libgfortran5:s390x 138s Re-Instated liblapack3:s390x 138s Re-Instated python3-numpy:s390x 138s Re-Instated libfreetype6:s390x 138s Re-Instated libgomp1:s390x 138s Re-Instated libimagequant0:s390x 138s Re-Instated libjpeg-turbo8:s390x 138s Re-Instated libjpeg8:s390x 138s Re-Instated liblcms2-2:s390x 138s Re-Instated libopenjp2-7:s390x 138s Re-Instated libgraphite2-3:s390x 138s Re-Instated libharfbuzz0b:s390x 138s Re-Instated libraqm0:s390x 138s Re-Instated libdeflate0:s390x 138s Re-Instated libjbig0:s390x 138s Re-Instated libsharpyuv0:s390x 138s Re-Instated libwebp7:s390x 138s Re-Instated libtiff6:s390x 138s Re-Instated libwebpdemux2:s390x 138s Re-Instated libwebpmux3:s390x 138s Re-Instated python3-pil:s390x 138s Re-Instated fonts-dejavu-mono:s390x 138s Re-Instated fonts-dejavu-core:s390x 138s Re-Instated fontconfig-config:s390x 138s Re-Instated libfontconfig1:s390x 138s Re-Instated libpixman-1-0:s390x 138s Re-Instated libxcb-render0:s390x 138s Re-Instated libxcb-shm0:s390x 138s Re-Instated libxrender1:s390x 138s Re-Instated libcairo2:s390x 138s Re-Instated python3-cairo:s390x 138s Re-Instated python3-freetype:s390x 138s Re-Instated python3-rlpycairo:s390x 138s Re-Instated fonts-dejavu-extra:s390x 138s Re-Instated libfontenc1:s390x 138s Re-Instated x11-common:s390x 138s Re-Instated xfonts-encodings:s390x 138s Re-Instated xfonts-utils:s390x 138s Re-Instated fonts-urw-base35:s390x 138s Re-Instated python3-reportlab:s390x 138s Re-Instated sgml-base:s390x 138s Re-Instated xml-core:s390x 138s Re-Instated w3c-sgml-lib:s390x 138s Re-Instated python3-biopython:s390x 138s Broken python3-nanoget:s390x Depends on python3-pandas:s390x < none | 2.1.4+dfsg-4ubuntu2 @un uH > (>= 2.0.0) 138s Considering python3-pandas:s390x 0 as a solution to python3-nanoget:s390x 9999 138s Re-Instated python3-dateutil:s390x 138s Re-Instated python3-pandas-lib:s390x 138s Re-Instated python3-pandas:s390x 138s Broken python3-nanoget:s390x Depends on python3-pysam:s390x < none @un H > 138s Broken python3-nanoget:s390x Depends on python3-nanomath:s390x < none | 1.2.1+ds-1 @un uH > 138s Considering python3-nanomath:s390x 1 as a solution to python3-nanoget:s390x 9999 138s Re-Instated python3-wrapt:s390x 138s Re-Instated python3-deprecated:s390x 138s Re-Instated python3-nanomath:s390x 138s Done 138s Some packages could not be installed. This may mean that you have 138s requested an impossible situation or if you are using the unstable 138s distribution that some required packages have not yet been created 138s or been moved out of Incoming. 138s The following information may help to resolve the situation: 138s 138s The following packages have unmet dependencies: 138s python3-nanoget : Depends: python3-pysam but it is not installable 138s E: Unable to correct problems, you have held broken packages. 138s run-unit-test FAIL badpkg 138s blame: python-nanoget 138s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 138s autopkgtest [04:35:29]: @@@@@@@@@@@@@@@@@@@@ summary 138s run-unit-test FAIL badpkg 138s blame: python-nanoget 138s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 149s Creating nova instance adt-noble-s390x-python-nanoget-20240323-043311-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240322.img (UUID c8671f9a-0e89-48e3-af4f-3c79b89294e8)...