0s autopkgtest [13:13:58]: starting date and time: 2024-03-22 13:13:58+0000 0s autopkgtest [13:13:58]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [13:13:58]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.esm0vcbi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sphinx --apt-upgrade python-cai --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-5.secgroup --name adt-noble-s390x-python-cai-20240322-131358-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 104s autopkgtest [13:15:42]: testbed dpkg architecture: s390x 104s autopkgtest [13:15:42]: testbed apt version: 2.7.12 104s autopkgtest [13:15:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 105s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 105s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 105s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [54.0 kB] 105s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 105s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3808 kB] 107s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [665 kB] 107s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 107s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 107s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 107s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3992 kB] 108s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 108s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [45.1 kB] 108s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 109s Fetched 9196 kB in 4s (2467 kB/s) 109s Reading package lists... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Calculating upgrade... 113s The following packages will be upgraded: 113s cloud-init debianutils fonts-ubuntu-console python3-markupsafe 113s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Need to get 719 kB of archives. 113s After this operation, 11.3 kB disk space will be freed. 113s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x debianutils s390x 5.17 [90.1 kB] 113s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 113s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x python3-markupsafe s390x 2.1.5-1build1 [12.8 kB] 113s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x cloud-init all 24.1.2-0ubuntu1 [597 kB] 113s Preconfiguring packages ... 114s Fetched 719 kB in 1s (1029 kB/s) 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 114s Preparing to unpack .../debianutils_5.17_s390x.deb ... 114s Unpacking debianutils (5.17) over (5.16) ... 114s Setting up debianutils (5.17) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 114s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 114s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 114s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_s390x.deb ... 114s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 114s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 114s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 114s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 114s Setting up cloud-init (24.1.2-0ubuntu1) ... 115s Setting up python3-markupsafe (2.1.5-1build1) ... 115s Processing triggers for man-db (2.12.0-3) ... 116s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 116s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Unknown architecture, assuming PC-style ttyS0 117s sh: Attempting to set up Debian/Ubuntu apt sources automatically 117s sh: Distribution appears to be Ubuntu 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s eatmydata is already the newest version (131-1). 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s dbus is already the newest version (1.14.10-4ubuntu1). 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s rng-tools-debian is already the newest version (2.4). 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s The following packages will be REMOVED: 119s cloud-init* python3-configobj* python3-debconf* 119s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 119s After this operation, 3256 kB disk space will be freed. 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 119s Removing cloud-init (24.1.2-0ubuntu1) ... 120s Removing python3-configobj (5.0.8-3) ... 120s Removing python3-debconf (1.5.86) ... 120s Processing triggers for man-db (2.12.0-3) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51781 files and directories currently installed.) 120s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 121s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 121s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 121s invoke-rc.d: policy-rc.d denied execution of try-restart. 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s linux-generic is already the newest version (6.8.0-11.11+1). 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 122s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 122s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 124s Reading package lists... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s Calculating upgrade... 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s autopkgtest [13:16:03]: rebooting testbed after setup commands that affected boot 140s autopkgtest [13:16:18]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 143s autopkgtest [13:16:21]: @@@@@@@@@@@@@@@@@@@@ apt-source python-cai 147s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-cai 1.0.2-4 (dsc) [2306 B] 147s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-cai 1.0.2-4 (tar) [1379 kB] 147s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-cai 1.0.2-4 (diff) [3336 B] 147s gpgv: Signature made Sat Oct 22 10:31:56 2022 UTC 147s gpgv: using RSA key B23862C415D6565A4E86CBD7579C160D4C9E23E8 147s gpgv: Can't check signature: No public key 147s dpkg-source: warning: cannot verify inline signature for ./python-cai_1.0.2-4.dsc: no acceptable signature found 147s autopkgtest [13:16:24]: testing package python-cai version 1.0.2-4 148s autopkgtest [13:16:26]: build not needed 151s autopkgtest [13:16:29]: test command1: preparing testbed 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 157s Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 157s The following additional packages will be installed: 157s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 157s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 157s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 157s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc 157s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 libpixman-1-0 157s libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 157s libxcb-render0 libxcb-shm0 libxrender1 python-cai-doc python3-biopython 157s python3-cai python3-cairo python3-click python3-colorama python3-decorator 157s python3-freetype python3-iniconfig python3-numpy python3-packaging 157s python3-pil python3-pluggy python3-pytest python3-reportlab 157s python3-rlpycairo python3-scipy sgml-base w3c-sgml-lib x11-common 157s xfonts-encodings xfonts-utils xml-core 157s Suggested packages: 157s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 157s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 157s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 157s python3-rdflib python3-psycopg2 raxml samtools t-coffee wise gcc gfortran 157s python3-dev python-pil-doc pdf-viewer python3-egenix-mxtexttools 157s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc sgml-base-doc 157s debhelper 157s Recommended packages: 157s javascript-common python-biopython-doc ncbi-blast+ python3-olefile g++ 157s | c++-compiler 157s The following NEW packages will be installed: 157s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-extra 157s fonts-dejavu-mono fonts-urw-base35 libblas3 libcairo2 libdeflate0 157s libfontconfig1 libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 157s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 157s libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 157s libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 157s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 157s python-cai-doc python3-biopython python3-cai python3-cairo python3-click 157s python3-colorama python3-decorator python3-freetype python3-iniconfig 157s python3-numpy python3-packaging python3-pil python3-pluggy python3-pytest 157s python3-reportlab python3-rlpycairo python3-scipy sgml-base w3c-sgml-lib 157s x11-common xfonts-encodings xfonts-utils xml-core 157s 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. 157s Need to get 52.4 MB/52.4 MB of archives. 157s After this operation, 203 MB of additional disk space will be used. 157s Get:1 /tmp/autopkgtest.hZWAY1/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B] 158s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x sgml-base all 1.31 [11.4 kB] 158s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 159s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 160s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libfontenc1 s390x 1:1.1.8-1 [14.8 kB] 160s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 160s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 160s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 161s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x xfonts-utils s390x 1:7.7+6build2 [94.8 kB] 161s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 169s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 169s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-extra all 2.37-8 [1947 kB] 170s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 170s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 170s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 170s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 170s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 170s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 170s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 170s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 170s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 170s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 170s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 170s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 171s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libimagequant0 s390x 2.18.0-1 [42.9 kB] 171s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 171s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 171s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 171s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 171s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libjs-sphinxdoc all 7.2.6-4 [149 kB] 171s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 172s Get:32 http://ftpmaster.internal/ubuntu noble/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1 [28.4 kB] 172s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB] 172s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libraqm0 s390x 0.10.1-1 [14.4 kB] 172s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 172s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 172s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 172s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 172s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libwebpdemux2 s390x 1.3.2-0.4 [12.4 kB] 172s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libwebpmux3 s390x 1.3.2-0.4 [25.4 kB] 172s Get:41 http://ftpmaster.internal/ubuntu noble/universe s390x python-cai-doc all 1.0.2-4 [25.7 kB] 172s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x python3-numpy s390x 1:1.24.2-2 [5137 kB] 174s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libopenjp2-7 s390x 2.5.0-2 [169 kB] 174s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x python3-pil s390x 10.2.0-1 [519 kB] 174s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x python3-cairo s390x 1.25.1-2 [150 kB] 174s Get:46 http://ftpmaster.internal/ubuntu noble/universe s390x python3-freetype all 2.4.0-1 [83.1 kB] 174s Get:47 http://ftpmaster.internal/ubuntu noble/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B] 174s Get:48 http://ftpmaster.internal/ubuntu noble/universe s390x python3-reportlab all 4.1.0-1 [683 kB] 175s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x xml-core all 0.19 [20.3 kB] 175s Get:50 http://ftpmaster.internal/ubuntu noble/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] 175s Get:51 http://ftpmaster.internal/ubuntu noble/universe s390x python3-biopython s390x 1.81+dfsg-3 [2234 kB] 176s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x python3-colorama all 0.4.6-4 [32.1 kB] 176s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x python3-click all 8.1.6-1 [79.0 kB] 176s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 176s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x python3-scipy s390x 1.11.4-6 [20.1 MB] 189s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x python3-cai all 1.0.2-4 [8300 B] 189s Get:57 http://ftpmaster.internal/ubuntu noble/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 189s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x python3-packaging all 23.2-1 [40.6 kB] 189s Get:59 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pluggy all 1.4.0-1 [20.4 kB] 189s Get:60 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pytest all 7.4.4-1 [305 kB] 190s Fetched 52.4 MB in 32s (1644 kB/s) 190s Selecting previously unselected package sgml-base. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51726 files and directories currently installed.) 190s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 190s Unpacking sgml-base (1.31) ... 190s Selecting previously unselected package fonts-dejavu-mono. 190s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 190s Unpacking fonts-dejavu-mono (2.37-8) ... 190s Selecting previously unselected package fonts-dejavu-core. 190s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 190s Unpacking fonts-dejavu-core (2.37-8) ... 190s Selecting previously unselected package libfontenc1:s390x. 190s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1_s390x.deb ... 190s Unpacking libfontenc1:s390x (1:1.1.8-1) ... 190s Selecting previously unselected package libfreetype6:s390x. 190s Preparing to unpack .../04-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 190s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 190s Selecting previously unselected package x11-common. 190s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu2_all.deb ... 190s Unpacking x11-common (1:7.7+23ubuntu2) ... 190s Selecting previously unselected package xfonts-encodings. 190s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 190s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 190s Selecting previously unselected package xfonts-utils. 190s Preparing to unpack .../07-xfonts-utils_1%3a7.7+6build2_s390x.deb ... 190s Unpacking xfonts-utils (1:7.7+6build2) ... 190s Selecting previously unselected package fonts-urw-base35. 190s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ... 190s Unpacking fonts-urw-base35 (20200910-8) ... 190s Selecting previously unselected package fontconfig-config. 190s Preparing to unpack .../09-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 190s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 190s Selecting previously unselected package fonts-dejavu-extra. 190s Preparing to unpack .../10-fonts-dejavu-extra_2.37-8_all.deb ... 190s Unpacking fonts-dejavu-extra (2.37-8) ... 190s Selecting previously unselected package libblas3:s390x. 190s Preparing to unpack .../11-libblas3_3.12.0-3_s390x.deb ... 190s Unpacking libblas3:s390x (3.12.0-3) ... 190s Selecting previously unselected package libfontconfig1:s390x. 190s Preparing to unpack .../12-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 190s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 190s Selecting previously unselected package libpixman-1-0:s390x. 190s 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unselected package libjpeg-turbo8:s390x. 190s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 190s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 190s Selecting previously unselected package libjpeg8:s390x. 190s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_s390x.deb ... 190s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 190s Selecting previously unselected package libjs-jquery. 191s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 191s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 191s Selecting previously unselected package libjs-underscore. 191s Preparing to unpack .../27-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 191s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 191s Selecting previously unselected package libjs-sphinxdoc. 191s Preparing to unpack .../28-libjs-sphinxdoc_7.2.6-4_all.deb ... 191s Unpacking libjs-sphinxdoc (7.2.6-4) ... 191s Selecting previously unselected package liblapack3:s390x. 191s 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193s Setting up libopenjp2-7:s390x (2.5.0-2) ... 193s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 193s Setting up sgml-base (1.31) ... 193s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 193s Setting up libwebpmux3:s390x (1.3.2-0.4) ... 193s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 193s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 193s Setting up liblapack3:s390x (3.12.0-3) ... 193s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 193s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 193s Setting up python3-pytest (7.4.4-1) ... 194s Setting up libwebpdemux2:s390x (1.3.2-0.4) ... 194s Setting up python3-freetype (2.4.0-1) ... 194s Setting up xfonts-utils (1:7.7+6build2) ... 194s Setting up libraqm0:s390x (0.10.1-1) ... 194s Setting up python3-numpy (1:1.24.2-2) ... 196s Setting up libjs-sphinxdoc (7.2.6-4) ... 196s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 196s Setting up xml-core (0.19) ... 196s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 196s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1) ... 196s Setting up python3-scipy (1.11.4-6) ... 199s Setting up python-cai-doc (1.0.2-4) ... 199s Setting up fonts-urw-base35 (20200910-8) ... 199s Setting up libcairo2:s390x (1.18.0-1) ... 199s Setting up python3-pil:s390x (10.2.0-1) ... 199s Setting up python3-cairo (1.25.1-2) ... 199s Setting up python3-rlpycairo (0.3.0-3) ... 199s Setting up python3-reportlab (4.1.0-1) ... 200s Processing triggers for libc-bin (2.39-0ubuntu2) ... 200s Processing triggers for man-db (2.12.0-3) ... 201s Processing triggers for sgml-base (1.31) ... 201s Setting up w3c-sgml-lib (1.3-3) ... 225s Setting up python3-biopython (1.81+dfsg-3) ... 226s Setting up python3-cai (1.0.2-4) ... 226s Setting up autopkgtest-satdep (0) ... 229s (Reading database ... 56782 files and directories currently installed.) 229s Removing autopkgtest-satdep (0) ... 230s autopkgtest [13:17:48]: test command1: pytest-3 230s autopkgtest [13:17:48]: test command1: [----------------------- 231s ============================= test session starts ============================== 231s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 231s rootdir: /tmp/autopkgtest.hZWAY1/build.3U6/src 231s collected 15 items 231s 231s tests/test_cai.py ..... [ 33%] 231s tests/test_relative_adaptiveness.py .... [ 60%] 231s tests/test_rscu.py ...... [100%] 231s 231s =============================== warnings summary =============================== 231s tests/test_cai.py::test_only_non_synonymous 231s /usr/lib/python3/dist-packages/numpy/lib/function_base.py:518: RuntimeWarning: Mean of empty slice. 231s avg = a.mean(axis, **keepdims_kw) 231s 231s tests/test_cai.py::test_only_non_synonymous 231s /usr/lib/python3/dist-packages/numpy/core/_methods.py:192: RuntimeWarning: invalid value encountered in scalar divide 231s ret = ret.dtype.type(ret / rcount) 231s 231s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 231s ======================== 15 passed, 2 warnings in 0.39s ======================== 231s autopkgtest [13:17:49]: test command1: -----------------------] 232s command1 PASS 232s autopkgtest [13:17:50]: test command1: - - - - - - - - - - results - - - - - - - - - - 232s autopkgtest [13:17:50]: @@@@@@@@@@@@@@@@@@@@ summary 232s command1 PASS 247s Creating nova instance adt-noble-s390x-python-cai-20240322-131358-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240321.img (UUID f7ee8f0f-480f-4014-94f0-3be2a19e259d)...