0s autopkgtest [22:23:35]: starting date and time: 2024-03-17 22:23:35+0000
  0s autopkgtest [22:23:35]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [22:23:35]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ofdicjt_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ncbi-blast+,src:mbedtls --apt-upgrade python-biotools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=ncbi-blast+/2.12.0+ds-4build1 mbedtls/2.28.7-1.1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-15.secgroup --name adt-noble-s390x-python-biotools-20240317-222335-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
192s autopkgtest [22:26:47]: testbed dpkg architecture: s390x
193s autopkgtest [22:26:48]: testbed apt version: 2.7.12
193s autopkgtest [22:26:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup
193s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
194s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
194s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
194s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB]
194s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3691 kB]
194s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [639 kB]
194s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B]
194s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B]
194s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B]
194s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3878 kB]
195s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B]
195s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.2 kB]
195s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B]
196s Fetched 8913 kB in 2s (3928 kB/s)
196s Reading package lists...
199s Reading package lists...
199s Building dependency tree...
199s Reading state information...
199s Calculating upgrade...
199s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
199s Reading package lists...
199s Building dependency tree...
199s Reading state information...
200s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
200s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
200s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
200s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
200s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
201s Reading package lists...
201s Reading package lists...
201s Building dependency tree...
201s Reading state information...
202s Calculating upgrade...
202s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
202s Reading package lists...
202s Building dependency tree...
202s Reading state information...
202s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
205s autopkgtest [22:27:00]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024
205s autopkgtest [22:27:00]: @@@@@@@@@@@@@@@@@@@@ apt-source python-biotools
206s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-biotools 1.2.12-5 (dsc) [2077 B]
206s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-biotools 1.2.12-5 (tar) [25.4 kB]
206s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-biotools 1.2.12-5 (diff) [7412 B]
206s gpgv: Signature made Fri Dec 13 11:54:57 2019 UTC
206s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
206s gpgv:                issuer "tille@debian.org"
206s gpgv: Can't check signature: No public key
206s dpkg-source: warning: cannot verify inline signature for ./python-biotools_1.2.12-5.dsc: no acceptable signature found
206s autopkgtest [22:27:01]: testing package python-biotools version 1.2.12-5
207s autopkgtest [22:27:02]: build not needed
207s autopkgtest [22:27:02]: test autodep8-python3: preparing testbed
208s Reading package lists...
208s Building dependency tree...
208s Reading state information...
208s Starting pkgProblemResolver with broken count: 0
208s Starting 2 pkgProblemResolver with broken count: 0
208s Done
209s The following additional packages will be installed:
209s   blt clustalw fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx
209s   libblas3 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1
209s   libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8
209s   libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2
209s   libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libopenjp2-7
209s   libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7
209s   libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 ncbi-blast+
209s   ncbi-data python-matplotlib-data python3-all python3-appdirs
209s   python3-biotools python3-brotli python3-contourpy python3-cycler
209s   python3-dateutil python3-decorator python3-fonttools python3-fs
209s   python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
209s   python3-mpmath python3-numpy python3-packaging python3-pil
209s   python3-pil.imagetk python3-scipy python3-sympy python3-tk python3-ufolib2
209s   tk8.6-blt2.5 unicode-data x11-common
209s Suggested packages:
209s   blt-demo clustalx seaview libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6
209s   python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg
209s   fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
209s   python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
209s   python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc
209s   python3-gmpy2 gcc gfortran python3-dev python3-pytest python-pil-doc
209s   python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg
209s Recommended packages:
209s   javascript-common python3-bs4 python3-cssselect python3-html5lib
209s   python3-olefile g++ | c++-compiler isympy-common
209s The following NEW packages will be installed:
209s   autopkgtest-satdep blt clustalw fontconfig-config fonts-dejavu-core
209s   fonts-dejavu-mono fonts-lyx libblas3 libdeflate0 libfontconfig1 libfreetype6
209s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0
209s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0
209s   liblcms2-2 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libopenjp2-7
209s   libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7
209s   libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 ncbi-blast+
209s   ncbi-data python-matplotlib-data python3-all python3-appdirs
209s   python3-biotools python3-brotli python3-contourpy python3-cycler
209s   python3-dateutil python3-decorator python3-fonttools python3-fs
209s   python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
209s   python3-mpmath python3-numpy python3-packaging python3-pil
209s   python3-pil.imagetk python3-scipy python3-sympy python3-tk python3-ufolib2
209s   tk8.6-blt2.5 unicode-data x11-common
209s 0 upgraded, 70 newly installed, 0 to remove and 0 not upgraded.
209s Need to get 83.4 MB/83.4 MB of archives.
209s After this operation, 372 MB of additional disk space will be used.
209s Get:1 /tmp/autopkgtest.Vn6YsX/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [716 B]
209s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB]
209s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB]
209s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
209s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
209s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB]
209s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB]
209s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB]
209s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB]
209s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB]
209s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B]
209s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB]
209s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-7 [661 kB]
210s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x blt s390x 2.5.3+dfsg-7 [4826 B]
210s Get:15 http://ftpmaster.internal/ubuntu noble/universe s390x clustalw s390x 2.1+lgpl-7 [292 kB]
210s Get:16 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lyx all 2.4.0~RC3-1 [170 kB]
210s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB]
210s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB]
210s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB]
210s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB]
210s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB]
210s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB]
210s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libimagequant0 s390x 2.18.0-1 [42.9 kB]
210s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB]
210s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
210s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
210s Get:27 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
210s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB]
210s Get:29 http://ftpmaster.internal/ubuntu noble/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1 [28.4 kB]
210s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB]
210s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libmbedcrypto7t64 s390x 2.28.7-1.1ubuntu1 [216 kB]
210s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libmbedx509-1t64 s390x 2.28.7-1.1ubuntu1 [46.2 kB]
210s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libmbedtls14t64 s390x 2.28.7-1.1ubuntu1 [84.7 kB]
210s Get:34 http://ftpmaster.internal/ubuntu noble/universe s390x libqhull-r8.0 s390x 2020.2-6 [181 kB]
210s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libraqm0 s390x 0.10.1-1 [14.4 kB]
210s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB]
210s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB]
210s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB]
210s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB]
210s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libwebpdemux2 s390x 1.3.2-0.4 [12.4 kB]
210s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libwebpmux3 s390x 1.3.2-0.4 [25.4 kB]
210s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libxslt1.1 s390x 1.1.35-1 [157 kB]
210s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB]
211s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x ncbi-blast+ s390x 2.12.0+ds-4build1 [12.8 MB]
212s Get:45 http://ftpmaster.internal/ubuntu noble/universe s390x python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB]
212s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x python3-all s390x 3.12.1-0ubuntu2 [908 B]
212s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x python3-appdirs all 1.4.4-4 [10.9 kB]
212s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x python3-dateutil all 2.8.2-3 [79.2 kB]
212s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libopenjp2-7 s390x 2.5.0-2 [169 kB]
212s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x python3-pil s390x 10.2.0-1 [519 kB]
212s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x python3-tk s390x 3.11.5-1 [114 kB]
212s Get:52 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pil.imagetk s390x 10.2.0-1 [9578 B]
212s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x python3-numpy s390x 1:1.24.2-2 [5137 kB]
213s Get:54 http://ftpmaster.internal/ubuntu noble/universe s390x python3-contourpy s390x 1.0.7-1build2 [271 kB]
213s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x python3-cycler all 0.11.0-2 [8202 B]
213s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x python3-brotli s390x 1.1.0-2 [383 kB]
213s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x python3-decorator all 5.1.1-5 [10.1 kB]
213s Get:58 http://ftpmaster.internal/ubuntu noble/universe s390x python3-scipy s390x 1.11.4-6 [20.1 MB]
214s Get:59 http://ftpmaster.internal/ubuntu noble/universe s390x python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
214s Get:60 http://ftpmaster.internal/ubuntu noble/universe s390x python3-mpmath all 1.2.1-3 [421 kB]
215s Get:61 http://ftpmaster.internal/ubuntu noble/universe s390x python3-sympy all 1.12-7 [3966 kB]
215s Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x python3-fs all 2.4.16-3 [91.1 kB]
215s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x python3-lxml s390x 5.1.0-1 [2268 kB]
215s Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x python3-lz4 s390x 4.0.2+dfsg-1build2 [26.8 kB]
215s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x unicode-data all 15.1.0-1 [8878 kB]
216s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x python3-fonttools s390x 4.46.0-1 [1668 kB]
216s Get:67 http://ftpmaster.internal/ubuntu noble/universe s390x python3-kiwisolver s390x 1.4.4-1build2 [71.9 kB]
216s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x python3-packaging all 23.2-1 [40.6 kB]
216s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x python3-matplotlib s390x 3.6.3-1ubuntu3 [7346 kB]
217s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x python3-biotools all 1.2.12-5 [28.9 kB]
217s Fetched 83.4 MB in 8s (10.6 MB/s)
217s Selecting previously unselected package libtcl8.6:s390x.
217s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 52171 files and directories currently installed.)
217s Preparing to unpack .../00-libtcl8.6_8.6.13+dfsg-2_s390x.deb ...
217s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ...
217s Selecting previously unselected package libfreetype6:s390x.
217s Preparing to unpack .../01-libfreetype6_2.13.2+dfsg-1_s390x.deb ...
217s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ...
217s Selecting previously unselected package fonts-dejavu-mono.
217s Preparing to unpack .../02-fonts-dejavu-mono_2.37-8_all.deb ...
217s Unpacking fonts-dejavu-mono (2.37-8) ...
217s Selecting previously unselected package fonts-dejavu-core.
217s Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ...
217s Unpacking fonts-dejavu-core (2.37-8) ...
217s Selecting previously unselected package fontconfig-config.
217s Preparing to unpack .../04-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ...
217s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
218s Selecting previously unselected package libfontconfig1:s390x.
218s Preparing to unpack .../05-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ...
218s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ...
218s Selecting previously unselected package libxrender1:s390x.
218s Preparing to unpack .../06-libxrender1_1%3a0.9.10-1.1_s390x.deb ...
218s Unpacking libxrender1:s390x (1:0.9.10-1.1) ...
218s Selecting previously unselected package libxft2:s390x.
218s Preparing to unpack .../07-libxft2_2.3.6-1_s390x.deb ...
218s Unpacking libxft2:s390x (2.3.6-1) ...
218s Selecting previously unselected package x11-common.
218s Preparing to unpack .../08-x11-common_1%3a7.7+23ubuntu2_all.deb ...
218s Unpacking x11-common (1:7.7+23ubuntu2) ...
218s Selecting previously unselected package libxss1:s390x.
218s Preparing to unpack .../09-libxss1_1%3a1.2.3-1build2_s390x.deb ...
218s Unpacking libxss1:s390x (1:1.2.3-1build2) ...
218s Selecting previously unselected package libtk8.6:s390x.
218s Preparing to unpack .../10-libtk8.6_8.6.13-2_s390x.deb ...
218s Unpacking libtk8.6:s390x (8.6.13-2) ...
218s Selecting previously unselected package tk8.6-blt2.5.
218s Preparing to unpack .../11-tk8.6-blt2.5_2.5.3+dfsg-7_s390x.deb ...
218s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ...
218s Selecting previously unselected package blt.
218s Preparing to unpack .../12-blt_2.5.3+dfsg-7_s390x.deb ...
218s Unpacking blt (2.5.3+dfsg-7) ...
218s Selecting previously unselected package clustalw.
218s Preparing to unpack .../13-clustalw_2.1+lgpl-7_s390x.deb ...
218s Unpacking clustalw (2.1+lgpl-7) ...
218s Selecting previously unselected package fonts-lyx.
218s Preparing to unpack .../14-fonts-lyx_2.4.0~RC3-1_all.deb ...
218s Unpacking fonts-lyx (2.4.0~RC3-1) ...
218s Selecting previously unselected package libblas3:s390x.
218s Preparing to unpack .../15-libblas3_3.12.0-3_s390x.deb ...
218s Unpacking libblas3:s390x (3.12.0-3) ...
218s Selecting previously unselected package libdeflate0:s390x.
218s Preparing to unpack .../16-libdeflate0_1.19-1_s390x.deb ...
218s Unpacking libdeflate0:s390x (1.19-1) ...
218s Selecting previously unselected package libgfortran5:s390x.
218s Preparing to unpack .../17-libgfortran5_14-20240303-1ubuntu1_s390x.deb ...
218s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ...
218s Selecting previously unselected package libgomp1:s390x.
218s Preparing to unpack .../18-libgomp1_14-20240303-1ubuntu1_s390x.deb ...
218s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ...
218s Selecting previously unselected package libgraphite2-3:s390x.
218s Preparing to unpack .../19-libgraphite2-3_1.3.14-2_s390x.deb ...
218s Unpacking libgraphite2-3:s390x (1.3.14-2) ...
218s Selecting previously unselected package libharfbuzz0b:s390x.
218s Preparing to unpack .../20-libharfbuzz0b_8.3.0-2_s390x.deb ...
218s Unpacking libharfbuzz0b:s390x (8.3.0-2) ...
218s Selecting previously unselected package libimagequant0:s390x.
218s Preparing to unpack .../21-libimagequant0_2.18.0-1_s390x.deb ...
218s Unpacking libimagequant0:s390x (2.18.0-1) ...
218s Selecting previously unselected package libjpeg-turbo8:s390x.
218s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ...
218s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ...
218s Selecting previously unselected package libjpeg8:s390x.
218s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_s390x.deb ...
218s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
218s Selecting previously unselected package libjs-jquery.
218s Preparing to unpack .../24-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
218s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
218s Selecting previously unselected package libjs-jquery-ui.
218s Preparing to unpack .../25-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
218s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
218s Selecting previously unselected package liblapack3:s390x.
218s Preparing to unpack .../26-liblapack3_3.12.0-3_s390x.deb ...
218s Unpacking liblapack3:s390x (3.12.0-3) ...
218s Selecting previously unselected package liblbfgsb0:s390x.
218s Preparing to unpack .../27-liblbfgsb0_3.0+dfsg.4-1_s390x.deb ...
218s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1) ...
218s Selecting previously unselected package liblcms2-2:s390x.
218s Preparing to unpack .../28-liblcms2-2_2.14-2_s390x.deb ...
218s Unpacking liblcms2-2:s390x (2.14-2) ...
218s Selecting previously unselected package libmbedcrypto7t64:s390x.
218s Preparing to unpack .../29-libmbedcrypto7t64_2.28.7-1.1ubuntu1_s390x.deb ...
218s Unpacking libmbedcrypto7t64:s390x (2.28.7-1.1ubuntu1) ...
218s Selecting previously unselected package libmbedx509-1t64:s390x.
218s Preparing to unpack .../30-libmbedx509-1t64_2.28.7-1.1ubuntu1_s390x.deb ...
218s Unpacking libmbedx509-1t64:s390x (2.28.7-1.1ubuntu1) ...
218s Selecting previously unselected package libmbedtls14t64:s390x.
218s Preparing to unpack .../31-libmbedtls14t64_2.28.7-1.1ubuntu1_s390x.deb ...
218s Unpacking libmbedtls14t64:s390x (2.28.7-1.1ubuntu1) ...
218s Selecting previously unselected package libqhull-r8.0:s390x.
218s Preparing to unpack .../32-libqhull-r8.0_2020.2-6_s390x.deb ...
218s Unpacking libqhull-r8.0:s390x (2020.2-6) ...
218s Selecting previously unselected package libraqm0:s390x.
218s Preparing to unpack .../33-libraqm0_0.10.1-1_s390x.deb ...
218s Unpacking libraqm0:s390x (0.10.1-1) ...
218s Selecting previously unselected package libsharpyuv0:s390x.
218s Preparing to unpack .../34-libsharpyuv0_1.3.2-0.4_s390x.deb ...
218s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ...
218s Selecting previously unselected package libjbig0:s390x.
218s Preparing to unpack .../35-libjbig0_2.1-6.1ubuntu1_s390x.deb ...
218s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ...
218s Selecting previously unselected package libwebp7:s390x.
218s Preparing to unpack .../36-libwebp7_1.3.2-0.4_s390x.deb ...
218s Unpacking libwebp7:s390x (1.3.2-0.4) ...
218s Selecting previously unselected package libtiff6:s390x.
218s Preparing to unpack .../37-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ...
218s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ...
218s Selecting previously unselected package libwebpdemux2:s390x.
218s Preparing to unpack .../38-libwebpdemux2_1.3.2-0.4_s390x.deb ...
218s Unpacking libwebpdemux2:s390x (1.3.2-0.4) ...
218s Selecting previously unselected package libwebpmux3:s390x.
218s Preparing to unpack .../39-libwebpmux3_1.3.2-0.4_s390x.deb ...
218s Unpacking libwebpmux3:s390x (1.3.2-0.4) ...
218s Selecting previously unselected package libxslt1.1:s390x.
218s Preparing to unpack .../40-libxslt1.1_1.1.35-1_s390x.deb ...
218s Unpacking libxslt1.1:s390x (1.1.35-1) ...
218s Selecting previously unselected package ncbi-data.
218s Preparing to unpack .../41-ncbi-data_6.1.20170106+dfsg1-10_all.deb ...
218s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ...
218s Selecting previously unselected package ncbi-blast+.
218s Preparing to unpack .../42-ncbi-blast+_2.12.0+ds-4build1_s390x.deb ...
218s Unpacking ncbi-blast+ (2.12.0+ds-4build1) ...
219s Selecting previously unselected package python-matplotlib-data.
219s Preparing to unpack .../43-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ...
219s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ...
219s Selecting previously unselected package python3-all.
219s Preparing to unpack .../44-python3-all_3.12.1-0ubuntu2_s390x.deb ...
219s Unpacking python3-all (3.12.1-0ubuntu2) ...
219s Selecting previously unselected package python3-appdirs.
219s Preparing to unpack .../45-python3-appdirs_1.4.4-4_all.deb ...
219s Unpacking python3-appdirs (1.4.4-4) ...
219s Selecting previously unselected package python3-dateutil.
219s Preparing to unpack .../46-python3-dateutil_2.8.2-3_all.deb ...
219s Unpacking python3-dateutil (2.8.2-3) ...
219s Selecting previously unselected package libopenjp2-7:s390x.
219s Preparing to unpack .../47-libopenjp2-7_2.5.0-2_s390x.deb ...
219s Unpacking libopenjp2-7:s390x (2.5.0-2) ...
219s Selecting previously unselected package python3-pil:s390x.
219s Preparing to unpack .../48-python3-pil_10.2.0-1_s390x.deb ...
219s Unpacking python3-pil:s390x (10.2.0-1) ...
219s Selecting previously unselected package python3-tk:s390x.
219s Preparing to unpack .../49-python3-tk_3.11.5-1_s390x.deb ...
219s Unpacking python3-tk:s390x (3.11.5-1) ...
219s Selecting previously unselected package python3-pil.imagetk:s390x.
219s Preparing to unpack .../50-python3-pil.imagetk_10.2.0-1_s390x.deb ...
219s Unpacking python3-pil.imagetk:s390x (10.2.0-1) ...
219s Selecting previously unselected package python3-numpy.
219s Preparing to unpack .../51-python3-numpy_1%3a1.24.2-2_s390x.deb ...
219s Unpacking python3-numpy (1:1.24.2-2) ...
219s Selecting previously unselected package python3-contourpy.
219s Preparing to unpack .../52-python3-contourpy_1.0.7-1build2_s390x.deb ...
219s Unpacking python3-contourpy (1.0.7-1build2) ...
219s Selecting previously unselected package python3-cycler.
219s Preparing to unpack .../53-python3-cycler_0.11.0-2_all.deb ...
219s Unpacking python3-cycler (0.11.0-2) ...
219s Selecting previously unselected package python3-brotli.
219s Preparing to unpack .../54-python3-brotli_1.1.0-2_s390x.deb ...
219s Unpacking python3-brotli (1.1.0-2) ...
219s Selecting previously unselected package python3-decorator.
219s Preparing to unpack .../55-python3-decorator_5.1.1-5_all.deb ...
219s Unpacking python3-decorator (5.1.1-5) ...
219s Selecting previously unselected package python3-scipy.
219s Preparing to unpack .../56-python3-scipy_1.11.4-6_s390x.deb ...
219s Unpacking python3-scipy (1.11.4-6) ...
220s Selecting previously unselected package python3-ufolib2.
220s Preparing to unpack .../57-python3-ufolib2_0.16.0+dfsg1-1_all.deb ...
220s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ...
220s Selecting previously unselected package python3-mpmath.
220s Preparing to unpack .../58-python3-mpmath_1.2.1-3_all.deb ...
220s Unpacking python3-mpmath (1.2.1-3) ...
220s Selecting previously unselected package python3-sympy.
220s Preparing to unpack .../59-python3-sympy_1.12-7_all.deb ...
220s Unpacking python3-sympy (1.12-7) ...
220s Selecting previously unselected package python3-fs.
220s Preparing to unpack .../60-python3-fs_2.4.16-3_all.deb ...
220s Unpacking python3-fs (2.4.16-3) ...
220s Selecting previously unselected package python3-lxml:s390x.
220s Preparing to unpack .../61-python3-lxml_5.1.0-1_s390x.deb ...
220s Unpacking python3-lxml:s390x (5.1.0-1) ...
220s Selecting previously unselected package python3-lz4.
220s Preparing to unpack .../62-python3-lz4_4.0.2+dfsg-1build2_s390x.deb ...
220s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ...
220s Selecting previously unselected package unicode-data.
220s Preparing to unpack .../63-unicode-data_15.1.0-1_all.deb ...
220s Unpacking unicode-data (15.1.0-1) ...
220s Selecting previously unselected package python3-fonttools.
220s Preparing to unpack .../64-python3-fonttools_4.46.0-1_s390x.deb ...
220s Unpacking python3-fonttools (4.46.0-1) ...
221s Selecting previously unselected package python3-kiwisolver.
221s Preparing to unpack .../65-python3-kiwisolver_1.4.4-1build2_s390x.deb ...
221s Unpacking python3-kiwisolver (1.4.4-1build2) ...
221s Selecting previously unselected package python3-packaging.
221s Preparing to unpack .../66-python3-packaging_23.2-1_all.deb ...
221s Unpacking python3-packaging (23.2-1) ...
221s Selecting previously unselected package python3-matplotlib.
221s Preparing to unpack .../67-python3-matplotlib_3.6.3-1ubuntu3_s390x.deb ...
221s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ...
221s Selecting previously unselected package python3-biotools.
221s Preparing to unpack .../68-python3-biotools_1.2.12-5_all.deb ...
221s Unpacking python3-biotools (1.2.12-5) ...
221s Selecting previously unselected package autopkgtest-satdep.
221s Preparing to unpack .../69-1-autopkgtest-satdep.deb ...
221s Unpacking autopkgtest-satdep (0) ...
221s Setting up libgraphite2-3:s390x (1.3.14-2) ...
221s Setting up liblcms2-2:s390x (2.14-2) ...
221s Setting up ncbi-data (6.1.20170106+dfsg1-10) ...
221s Setting up libsharpyuv0:s390x (1.3.2-0.4) ...
221s Setting up libmbedcrypto7t64:s390x (2.28.7-1.1ubuntu1) ...
221s Setting up libxrender1:s390x (1:0.9.10-1.1) ...
221s Setting up python3-lz4 (4.0.2+dfsg-1build2) ...
221s Setting up fonts-lyx (2.4.0~RC3-1) ...
221s Setting up x11-common (1:7.7+23ubuntu2) ...
221s Setting up libdeflate0:s390x (1.19-1) ...
221s Setting up libqhull-r8.0:s390x (2020.2-6) ...
221s Setting up python3-all (3.12.1-0ubuntu2) ...
221s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ...
221s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ...
221s Setting up unicode-data (15.1.0-1) ...
221s Setting up python3-decorator (5.1.1-5) ...
221s Setting up libblas3:s390x (3.12.0-3) ...
221s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
221s Setting up python3-packaging (23.2-1) ...
222s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ...
222s Setting up python3-brotli (1.1.0-2) ...
222s Setting up python3-cycler (0.11.0-2) ...
222s Setting up libimagequant0:s390x (2.18.0-1) ...
222s Setting up fonts-dejavu-mono (2.37-8) ...
222s Setting up python3-kiwisolver (1.4.4-1build2) ...
222s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ...
222s Setting up fonts-dejavu-core (2.37-8) ...
222s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ...
222s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ...
222s Setting up libwebp7:s390x (1.3.2-0.4) ...
222s Setting up libxslt1.1:s390x (1.1.35-1) ...
222s Setting up clustalw (2.1+lgpl-7) ...
222s Setting up libopenjp2-7:s390x (2.5.0-2) ...
222s Setting up libharfbuzz0b:s390x (8.3.0-2) ...
222s Setting up python3-dateutil (2.8.2-3) ...
222s Setting up libxss1:s390x (1:1.2.3-1build2) ...
222s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
222s Setting up python3-mpmath (1.2.1-3) ...
223s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ...
223s Setting up libwebpmux3:s390x (1.3.2-0.4) ...
223s Setting up python3-appdirs (1.4.4-4) ...
223s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
223s Setting up python3-sympy (1.12-7) ...
227s Setting up liblapack3:s390x (3.12.0-3) ...
227s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
227s Setting up libmbedx509-1t64:s390x (2.28.7-1.1ubuntu1) ...
228s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
228s Setting up libwebpdemux2:s390x (1.3.2-0.4) ...
228s Setting up python3-fs (2.4.16-3) ...
228s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
228s Setting up libraqm0:s390x (0.10.1-1) ...
228s Setting up python3-numpy (1:1.24.2-2) ...
229s Setting up libmbedtls14t64:s390x (2.28.7-1.1ubuntu1) ...
229s Setting up python3-lxml:s390x (5.1.0-1) ...
230s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ...
230s Setting up python3-contourpy (1.0.7-1build2) ...
230s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ...
230s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1) ...
230s Setting up libxft2:s390x (2.3.6-1) ...
230s Setting up python3-scipy (1.11.4-6) ...
232s Setting up libtk8.6:s390x (8.6.13-2) ...
232s Setting up ncbi-blast+ (2.12.0+ds-4build1) ...
232s Setting up python3-pil:s390x (10.2.0-1) ...
233s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ...
233s Setting up blt (2.5.3+dfsg-7) ...
233s Setting up python3-tk:s390x (3.11.5-1) ...
233s Setting up python3-pil.imagetk:s390x (10.2.0-1) ...
233s Setting up python3-fonttools (4.46.0-1) ...
234s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
234s Setting up python3-matplotlib (3.6.3-1ubuntu3) ...
235s Setting up python3-biotools (1.2.12-5) ...
235s Setting up autopkgtest-satdep (0) ...
235s Processing triggers for libc-bin (2.39-0ubuntu2) ...
235s Processing triggers for man-db (2.12.0-3) ...
239s (Reading database ... 59444 files and directories currently installed.)
239s Removing autopkgtest-satdep (0) ...
239s autopkgtest [22:27:34]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import biotools; print(biotools)" ; done
239s autopkgtest [22:27:34]: test autodep8-python3: [-----------------------
240s Testing with python3.12:
240s <module 'biotools' from '/usr/lib/python3/dist-packages/biotools/__init__.py'>
240s autopkgtest [22:27:35]: test autodep8-python3: -----------------------]
241s autopkgtest [22:27:35]: test autodep8-python3:  - - - - - - - - - - results - - - - - - - - - -
241s autodep8-python3     PASS (superficial)
241s autopkgtest [22:27:36]: @@@@@@@@@@@@@@@@@@@@ summary
241s autodep8-python3     PASS (superficial)
253s Creating nova instance adt-noble-s390x-python-biotools-20240317-222335-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240316.img (UUID 7afe023c-7cb8-41b6-91a7-c69e7d1e7c0d)...