0s autopkgtest [12:58:19]: starting date and time: 2024-03-22 12:58:19+0000 0s autopkgtest [12:58:19]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [12:58:19]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1kmj45js/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sphinx --apt-upgrade python-biom-format --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-13.secgroup --name adt-noble-s390x-python-biom-format-20240322-125819-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 77s autopkgtest [12:59:36]: testbed dpkg architecture: s390x 77s autopkgtest [12:59:36]: testbed apt version: 2.7.12 77s autopkgtest [12:59:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 78s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 78s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [54.0 kB] 78s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 78s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 79s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3808 kB] 81s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [665 kB] 81s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 81s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 81s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 81s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3992 kB] 82s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 82s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [45.1 kB] 82s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 84s Fetched 9196 kB in 5s (1687 kB/s) 84s Reading package lists... 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Calculating upgrade... 87s The following packages will be upgraded: 87s cloud-init debianutils fonts-ubuntu-console python3-markupsafe 87s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 87s Need to get 719 kB of archives. 87s After this operation, 11.3 kB disk space will be freed. 87s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x debianutils s390x 5.17 [90.1 kB] 88s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 88s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x python3-markupsafe s390x 2.1.5-1build1 [12.8 kB] 88s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x cloud-init all 24.1.2-0ubuntu1 [597 kB] 88s Preconfiguring packages ... 88s Fetched 719 kB in 1s (904 kB/s) 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 88s Preparing to unpack .../debianutils_5.17_s390x.deb ... 88s Unpacking debianutils (5.17) over (5.16) ... 88s Setting up debianutils (5.17) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 88s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 88s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 88s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_s390x.deb ... 88s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 88s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 89s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 89s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 89s Setting up cloud-init (24.1.2-0ubuntu1) ... 90s Setting up python3-markupsafe (2.1.5-1build1) ... 90s Processing triggers for man-db (2.12.0-3) ... 91s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Unknown architecture, assuming PC-style ttyS0 92s sh: Attempting to set up Debian/Ubuntu apt sources automatically 92s sh: Distribution appears to be Ubuntu 92s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s eatmydata is already the newest version (131-1). 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s dbus is already the newest version (1.14.10-4ubuntu1). 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s rng-tools-debian is already the newest version (2.4). 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s The following packages will be REMOVED: 94s cloud-init* python3-configobj* python3-debconf* 94s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 94s After this operation, 3256 kB disk space will be freed. 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 94s Removing cloud-init (24.1.2-0ubuntu1) ... 94s Removing python3-configobj (5.0.8-3) ... 94s Removing python3-debconf (1.5.86) ... 94s Processing triggers for man-db (2.12.0-3) ... 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51781 files and directories currently installed.) 95s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 95s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 95s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 95s invoke-rc.d: policy-rc.d denied execution of try-restart. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s linux-generic is already the newest version (6.8.0-11.11+1). 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 96s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 96s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 98s Reading package lists... 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Calculating upgrade... 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s autopkgtest [12:59:58]: rebooting testbed after setup commands that affected boot 113s autopkgtest [13:00:12]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 116s autopkgtest [13:00:15]: @@@@@@@@@@@@@@@@@@@@ apt-source python-biom-format 121s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-biom-format 2.1.15.2-3 (dsc) [1883 B] 121s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-biom-format 2.1.15.2-3 (tar) [11.9 MB] 121s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-biom-format 2.1.15.2-3 (diff) [11.5 kB] 121s gpgv: Signature made Sun Feb 4 19:23:04 2024 UTC 121s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 121s gpgv: Can't check signature: No public key 121s dpkg-source: warning: cannot verify inline signature for ./python-biom-format_2.1.15.2-3.dsc: no acceptable signature found 122s autopkgtest [13:00:21]: testing package python-biom-format version 2.1.15.2-3 122s autopkgtest [13:00:21]: build not needed 129s autopkgtest [13:00:28]: test run-unit-test: preparing testbed 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Starting pkgProblemResolver with broken count: 0 131s Starting 2 pkgProblemResolver with broken count: 0 131s Done 131s The following additional packages will be installed: 131s libaec0 libblas3 libgfortran5 libhdf5-103-1 libhdf5-hl-100 libjs-jquery 131s libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblzf1 libsz2 131s python-biom-format-doc python3-biom-format python3-click python3-colorama 131s python3-dateutil python3-decorator python3-h5py python3-h5py-serial 131s python3-numpy python3-pandas python3-pandas-lib python3-scipy 131s Suggested packages: 131s python-h5py-doc gcc gfortran python3-dev python3-pytest python-pandas-doc 131s python3-statsmodels python-scipy-doc 131s Recommended packages: 131s javascript-common python3-matplotlib python3-bottleneck python3-numexpr 131s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 131s python3-tables g++ | c++-compiler python3-pil 131s The following NEW packages will be installed: 131s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1 131s libhdf5-hl-100 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 131s liblbfgsb0 liblzf1 libsz2 python-biom-format-doc python3-biom-format 131s python3-click python3-colorama python3-dateutil python3-decorator 131s python3-h5py python3-h5py-serial python3-numpy python3-pandas 131s python3-pandas-lib python3-scipy 131s 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. 131s Need to get 45.1 MB/45.1 MB of archives. 131s After this operation, 220 MB of additional disk space will be used. 131s Get:1 /tmp/autopkgtest.mEtzQl/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B] 131s Get:2 http://ftpmaster.internal/ubuntu noble/universe s390x libaec0 s390x 1.1.2-1 [25.7 kB] 131s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 132s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 132s Get:5 http://ftpmaster.internal/ubuntu noble/universe s390x libsz2 s390x 1.1.2-1 [5346 B] 132s Get:6 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-103-1 s390x 1.10.10+repack-3ubuntu1 [1425 kB] 133s Get:7 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-100 s390x 1.10.10+repack-3ubuntu1 [57.5 kB] 133s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 133s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 133s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libjs-sphinxdoc all 7.2.6-4 [149 kB] 134s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 134s Get:12 http://ftpmaster.internal/ubuntu noble/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1 [28.4 kB] 134s Get:13 http://ftpmaster.internal/ubuntu noble/universe s390x liblzf1 s390x 3.6-4 [7020 B] 134s Get:14 http://ftpmaster.internal/ubuntu noble/universe s390x python-biom-format-doc all 2.1.15.2-3 [57.1 kB] 134s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x python3-numpy s390x 1:1.24.2-2 [5137 kB] 135s Get:16 http://ftpmaster.internal/ubuntu noble/universe s390x python3-h5py-serial s390x 3.10.0-1ubuntu1 [1535 kB] 135s Get:17 http://ftpmaster.internal/ubuntu noble/universe s390x python3-h5py all 3.10.0-1ubuntu1 [7970 B] 135s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x python3-colorama all 0.4.6-4 [32.1 kB] 135s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x python3-click all 8.1.6-1 [79.0 kB] 135s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x python3-dateutil all 2.8.2-3 [79.2 kB] 136s Get:21 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pandas-lib s390x 2.1.4+dfsg-4ubuntu2 [8852 kB] 136s Get:22 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 137s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 137s Get:24 http://ftpmaster.internal/ubuntu noble/universe s390x python3-scipy s390x 1.11.4-6 [20.1 MB] 138s Get:25 http://ftpmaster.internal/ubuntu noble/universe s390x python3-biom-format s390x 2.1.15.2-3 [190 kB] 138s Fetched 45.1 MB in 7s (6838 kB/s) 138s Selecting previously unselected package libaec0:s390x. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51726 files and directories currently installed.) 138s Preparing to unpack .../00-libaec0_1.1.2-1_s390x.deb ... 138s Unpacking libaec0:s390x (1.1.2-1) ... 138s Selecting previously unselected package libblas3:s390x. 138s Preparing to unpack .../01-libblas3_3.12.0-3_s390x.deb ... 138s Unpacking libblas3:s390x (3.12.0-3) ... 138s Selecting previously unselected package libgfortran5:s390x. 138s Preparing to unpack .../02-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 138s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libsz2:s390x. 138s Preparing to unpack .../03-libsz2_1.1.2-1_s390x.deb ... 138s Unpacking libsz2:s390x (1.1.2-1) ... 138s Selecting previously unselected package libhdf5-103-1:s390x. 138s Preparing to unpack .../04-libhdf5-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 138s Unpacking libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 138s Selecting previously unselected package libhdf5-hl-100:s390x. 138s Preparing to unpack .../05-libhdf5-hl-100_1.10.10+repack-3ubuntu1_s390x.deb ... 138s Unpacking libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 138s Selecting previously unselected package libjs-jquery. 138s Preparing to unpack .../06-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 138s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 138s Selecting previously unselected package libjs-underscore. 138s Preparing to unpack .../07-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 138s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 138s Selecting previously unselected package libjs-sphinxdoc. 138s Preparing to unpack .../08-libjs-sphinxdoc_7.2.6-4_all.deb ... 138s Unpacking libjs-sphinxdoc (7.2.6-4) ... 138s Selecting previously unselected package liblapack3:s390x. 138s Preparing to unpack .../09-liblapack3_3.12.0-3_s390x.deb ... 138s Unpacking liblapack3:s390x (3.12.0-3) ... 138s Selecting previously unselected package liblbfgsb0:s390x. 138s Preparing to unpack .../10-liblbfgsb0_3.0+dfsg.4-1_s390x.deb ... 138s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1) ... 138s Selecting previously unselected package liblzf1:s390x. 138s Preparing to unpack .../11-liblzf1_3.6-4_s390x.deb ... 138s Unpacking liblzf1:s390x (3.6-4) ... 138s Selecting previously unselected package python-biom-format-doc. 138s Preparing to unpack .../12-python-biom-format-doc_2.1.15.2-3_all.deb ... 138s Unpacking python-biom-format-doc (2.1.15.2-3) ... 138s Selecting previously unselected package python3-numpy. 138s Preparing to unpack .../13-python3-numpy_1%3a1.24.2-2_s390x.deb ... 138s Unpacking python3-numpy (1:1.24.2-2) ... 139s Selecting previously unselected package python3-h5py-serial. 139s Preparing to unpack .../14-python3-h5py-serial_3.10.0-1ubuntu1_s390x.deb ... 139s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ... 139s Selecting previously unselected package python3-h5py. 139s Preparing to unpack .../15-python3-h5py_3.10.0-1ubuntu1_all.deb ... 139s Unpacking python3-h5py (3.10.0-1ubuntu1) ... 139s Selecting previously unselected package python3-colorama. 139s Preparing to unpack .../16-python3-colorama_0.4.6-4_all.deb ... 139s Unpacking python3-colorama (0.4.6-4) ... 139s Selecting previously unselected package python3-click. 139s Preparing to unpack .../17-python3-click_8.1.6-1_all.deb ... 139s Unpacking python3-click (8.1.6-1) ... 139s Selecting previously unselected package python3-dateutil. 139s Preparing to unpack .../18-python3-dateutil_2.8.2-3_all.deb ... 139s Unpacking python3-dateutil (2.8.2-3) ... 139s Selecting previously unselected package python3-pandas-lib:s390x. 139s Preparing to unpack .../19-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_s390x.deb ... 139s Unpacking python3-pandas-lib:s390x (2.1.4+dfsg-4ubuntu2) ... 139s Selecting previously unselected package python3-pandas. 139s Preparing to unpack .../20-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 139s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 139s Selecting previously unselected package python3-decorator. 139s Preparing to unpack .../21-python3-decorator_5.1.1-5_all.deb ... 139s Unpacking python3-decorator (5.1.1-5) ... 139s Selecting previously unselected package python3-scipy. 139s Preparing to unpack .../22-python3-scipy_1.11.4-6_s390x.deb ... 139s Unpacking python3-scipy (1.11.4-6) ... 140s Selecting previously unselected package python3-biom-format. 140s Preparing to unpack .../23-python3-biom-format_2.1.15.2-3_s390x.deb ... 140s Unpacking python3-biom-format (2.1.15.2-3) ... 140s Selecting previously unselected package autopkgtest-satdep. 140s Preparing to unpack .../24-1-autopkgtest-satdep.deb ... 140s Unpacking autopkgtest-satdep (0) ... 140s Setting up python3-colorama (0.4.6-4) ... 140s Setting up python3-click (8.1.6-1) ... 140s Setting up libaec0:s390x (1.1.2-1) ... 140s Setting up python3-decorator (5.1.1-5) ... 141s Setting up libblas3:s390x (3.12.0-3) ... 141s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 141s Setting up liblzf1:s390x (3.6-4) ... 141s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 141s Setting up python3-dateutil (2.8.2-3) ... 141s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 141s Setting up libsz2:s390x (1.1.2-1) ... 141s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 141s Setting up liblapack3:s390x (3.12.0-3) ... 141s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 141s Setting up python3-numpy (1:1.24.2-2) ... 142s Setting up libjs-sphinxdoc (7.2.6-4) ... 142s Setting up libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 142s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1) ... 142s Setting up libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 142s Setting up python3-scipy (1.11.4-6) ... 145s Setting up python3-pandas-lib:s390x (2.1.4+dfsg-4ubuntu2) ... 145s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ... 145s Setting up python-biom-format-doc (2.1.15.2-3) ... 145s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 149s Setting up python3-h5py (3.10.0-1ubuntu1) ... 149s Setting up python3-biom-format (2.1.15.2-3) ... 149s Setting up autopkgtest-satdep (0) ... 149s Processing triggers for man-db (2.12.0-3) ... 150s Processing triggers for libc-bin (2.39-0ubuntu2) ... 152s (Reading database ... 56414 files and directories currently installed.) 152s Removing autopkgtest-satdep (0) ... 153s autopkgtest [13:00:52]: test run-unit-test: [----------------------- 154s 154s System information 154s ================== 154s Platform: linux 154s Python version: 3.12.2 (main, Feb 7 2024, 20:47:03) [GCC 13.2.0] 154s Python executable: /usr/bin/python3 154s 154s Dependency versions 154s =================== 154s click version: 8.1.6 154s NumPy version: 1.24.2 154s SciPy version: 1.11.4 154s h5py version: 3.10.0 154s 154s biom-format package information 154s =============================== 154s biom-format version: 2.1.15 154s 154s 154s The input file is a valid BIOM-formatted file. 155s 155s The input file is a valid BIOM-formatted file. 156s 156s The input file is a valid BIOM-formatted file. 156s 156s The input file is a valid BIOM-formatted file. 157s + table=examples/min_sparse_otu_table_hdf5.biom 157s + obsmd=examples/obs_md.txt 157s + [ ! -f examples/min_sparse_otu_table_hdf5.biom ] 157s + biom show-install-info 158s 158s System information 158s ================== 158s Platform: linux 158s Python version: 3.12.2 (main, Feb 7 2024, 20:47:03) [GCC 13.2.0] 158s Python executable: /usr/bin/python3 158s 158s Dependency versions 158s =================== 158s click version: 8.1.6 158s NumPy version: 1.24.2 158s SciPy version: 1.11.4 158s h5py version: 3.10.0 158s 158s biom-format package information 158s =============================== 158s biom-format version: 2.1.15 158s 158s + biom validate-table -i examples/min_sparse_otu_table_hdf5.biom 158s 158s The input file is a valid BIOM-formatted file. 159s + biom add-metadata -i examples/min_sparse_otu_table_hdf5.biom -o test_add_metadata.biom --observation-metadata-fp examples/obs_md.txt --sc-separated taxonomy 159s + biom convert -i examples/min_sparse_otu_table_hdf5.biom -o test_json.biom --to-json 160s + biom convert -i examples/min_sparse_otu_table_hdf5.biom -o test_tsv.txt --to-tsv 160s + biom validate-table -i test_json.biom 161s 161s The input file is a valid BIOM-formatted file. 161s + biom convert -i test_json.biom -o test_hdf5.biom --to-hdf5 161s + biom validate-table -i test_hdf5.biom 162s 162s The input file is a valid BIOM-formatted file. 162s + biom convert -i test_json.biom -o test_tsv.txt --to-tsv 163s + biom convert -i test_tsv.txt -o test_hdf5.biom --to-hdf5 --table-type OTU table 163s + biom validate-table -i test_hdf5.biom 164s 164s The input file is a valid BIOM-formatted file. 164s + biom convert -i test_tsv.txt -o test_json.biom --to-json --table-type OTU table 164s + biom validate-table -i test_json.biom 165s 165s The input file is a valid BIOM-formatted file. 165s + biom head -i examples/min_sparse_otu_table_hdf5.biom 165s # Constructed from biom file 165s #OTU ID Sample1 Sample2 Sample3 Sample4 Sample5 165s GG_OTU_1 0.0 0.0 1.0 0.0 0.0 165s GG_OTU_2 5.0 1.0 0.0 2.0 3.0 165s GG_OTU_3 0.0 0.0 1.0 4.0 0.0 165s GG_OTU_4 2.0 1.0 1.0 0.0 0.0 165s GG_OTU_5 0.0 1.0 1.0 0.0 0.0 166s + biom table-ids -i examples/min_sparse_otu_table_hdf5.biom 166s Sample1 166s Sample2 166s Sample3 166s Sample4 166s Sample5 166s Sample6 166s + biom normalize-table -i examples/min_sparse_otu_table_hdf5.biom -o test_norm.biom -p 167s + cat 167s + biom subset-table -i examples/min_sparse_otu_table_hdf5.biom -o test_subset.biom -a observation -s ids.txt 167s + biom summarize-table -i examples/min_sparse_otu_table_hdf5.biom 168s Num samples: 6 168s Num observations: 5 168s Total count: 27 168s Table density (fraction of non-zero values): 0.500 168s 168s Counts/sample summary: 168s Min: 3.000 168s Max: 7.000 168s Median: 4.000 168s Mean: 4.500 168s Std. dev.: 1.500 168s Sample Metadata Categories: None provided 168s Observation Metadata Categories: None provided 168s 168s Counts/sample detail: 168s Sample2: 3.000 168s Sample5: 3.000 168s Sample3: 4.000 168s Sample6: 4.000 168s Sample4: 6.000 168s Sample1: 7.000 168s + cat 168s + biom from-uc -i uctest -o test_uc.biom 169s If this message was shown, then all commands executed without failure 169s + echo If this message was shown, then all commands executed without failure 169s autopkgtest [13:01:08]: test run-unit-test: -----------------------] 170s autopkgtest [13:01:09]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 170s run-unit-test PASS 170s autopkgtest [13:01:09]: test autodep8-python3: preparing testbed 275s autopkgtest [13:02:54]: testbed dpkg architecture: s390x 275s autopkgtest [13:02:54]: testbed apt version: 2.7.12 275s autopkgtest [13:02:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 276s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 277s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [54.0 kB] 277s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 277s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 277s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3808 kB] 279s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [665 kB] 279s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 279s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 279s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 279s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3992 kB] 280s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 280s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [45.1 kB] 280s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 282s Fetched 9196 kB in 5s (1865 kB/s) 282s Reading package lists... 285s Reading package lists... 285s Building dependency tree... 285s Reading state information... 285s Calculating upgrade... 285s The following packages will be upgraded: 285s cloud-init debianutils fonts-ubuntu-console python3-markupsafe 285s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 285s Need to get 719 kB of archives. 285s After this operation, 11.3 kB disk space will be freed. 285s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x debianutils s390x 5.17 [90.1 kB] 286s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 286s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x python3-markupsafe s390x 2.1.5-1build1 [12.8 kB] 286s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x cloud-init all 24.1.2-0ubuntu1 [597 kB] 286s Preconfiguring packages ... 286s Fetched 719 kB in 1s (1329 kB/s) 286s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 286s Preparing to unpack .../debianutils_5.17_s390x.deb ... 286s Unpacking debianutils (5.17) over (5.16) ... 286s Setting up debianutils (5.17) ... 286s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 286s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 286s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 286s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_s390x.deb ... 286s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 286s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 287s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 287s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 287s Setting up cloud-init (24.1.2-0ubuntu1) ... 288s Setting up python3-markupsafe (2.1.5-1build1) ... 288s Processing triggers for man-db (2.12.0-3) ... 289s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 289s Reading package lists... 290s Building dependency tree... 290s Reading state information... 290s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 290s Unknown architecture, assuming PC-style ttyS0 290s sh: Attempting to set up Debian/Ubuntu apt sources automatically 290s sh: Distribution appears to be Ubuntu 291s Reading package lists... 291s Building dependency tree... 291s Reading state information... 291s eatmydata is already the newest version (131-1). 291s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 291s Reading package lists... 291s Building dependency tree... 291s Reading state information... 292s dbus is already the newest version (1.14.10-4ubuntu1). 292s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 292s Reading package lists... 292s Building dependency tree... 292s Reading state information... 292s rng-tools-debian is already the newest version (2.4). 292s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 292s Reading package lists... 292s Building dependency tree... 292s Reading state information... 292s The following packages will be REMOVED: 292s cloud-init* python3-configobj* python3-debconf* 293s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 293s After this operation, 3256 kB disk space will be freed. 293s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 293s Removing cloud-init (24.1.2-0ubuntu1) ... 293s Removing python3-configobj (5.0.8-3) ... 293s Removing python3-debconf (1.5.86) ... 293s Processing triggers for man-db (2.12.0-3) ... 294s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51781 files and directories currently installed.) 294s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 295s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 295s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 295s invoke-rc.d: policy-rc.d denied execution of try-restart. 295s Reading package lists... 295s Building dependency tree... 295s Reading state information... 296s linux-generic is already the newest version (6.8.0-11.11+1). 296s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 296s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 296s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 296s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 298s Reading package lists... 298s Reading package lists... 298s Building dependency tree... 298s Reading state information... 298s Calculating upgrade... 298s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 298s Reading package lists... 299s Building dependency tree... 299s Reading state information... 299s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 299s autopkgtest [13:03:18]: rebooting testbed after setup commands that affected boot 317s Reading package lists... 317s Building dependency tree... 317s Reading state information... 317s Starting pkgProblemResolver with broken count: 0 317s Starting 2 pkgProblemResolver with broken count: 0 317s Done 318s The following additional packages will be installed: 318s libaec0 libblas3 libgfortran5 libhdf5-103-1 libhdf5-hl-100 liblapack3 318s liblbfgsb0 liblzf1 libsz2 python3-all python3-biom-format python3-click 318s python3-colorama python3-dateutil python3-decorator python3-h5py 318s python3-h5py-serial python3-numpy python3-pandas python3-pandas-lib 318s python3-scipy 318s Suggested packages: 318s python-biom-format-doc python-h5py-doc gcc gfortran python3-dev 318s python3-pytest python-pandas-doc python3-statsmodels python-scipy-doc 318s Recommended packages: 318s python3-matplotlib python3-bottleneck python3-numexpr python3-odf 318s python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables 318s g++ | c++-compiler python3-pil 318s The following NEW packages will be installed: 318s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1 318s libhdf5-hl-100 liblapack3 liblbfgsb0 liblzf1 libsz2 python3-all 318s python3-biom-format python3-click python3-colorama python3-dateutil 318s python3-decorator python3-h5py python3-h5py-serial python3-numpy 318s python3-pandas python3-pandas-lib python3-scipy 318s 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. 318s Need to get 44.5 MB/44.5 MB of archives. 318s After this operation, 218 MB of additional disk space will be used. 318s Get:1 /tmp/autopkgtest.mEtzQl/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B] 318s Get:2 http://ftpmaster.internal/ubuntu noble/universe s390x libaec0 s390x 1.1.2-1 [25.7 kB] 318s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 318s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 319s Get:5 http://ftpmaster.internal/ubuntu noble/universe s390x libsz2 s390x 1.1.2-1 [5346 B] 319s Get:6 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-103-1 s390x 1.10.10+repack-3ubuntu1 [1425 kB] 320s Get:7 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-100 s390x 1.10.10+repack-3ubuntu1 [57.5 kB] 320s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 321s Get:9 http://ftpmaster.internal/ubuntu noble/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1 [28.4 kB] 321s Get:10 http://ftpmaster.internal/ubuntu noble/universe s390x liblzf1 s390x 3.6-4 [7020 B] 321s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x python3-all s390x 3.12.1-0ubuntu2 [908 B] 321s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x python3-numpy s390x 1:1.24.2-2 [5137 kB] 322s Get:13 http://ftpmaster.internal/ubuntu noble/universe s390x python3-h5py-serial s390x 3.10.0-1ubuntu1 [1535 kB] 322s Get:14 http://ftpmaster.internal/ubuntu noble/universe s390x python3-h5py all 3.10.0-1ubuntu1 [7970 B] 322s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x python3-colorama all 0.4.6-4 [32.1 kB] 322s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x python3-click all 8.1.6-1 [79.0 kB] 323s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x python3-dateutil all 2.8.2-3 [79.2 kB] 323s Get:18 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pandas-lib s390x 2.1.4+dfsg-4ubuntu2 [8852 kB] 324s Get:19 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 325s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 325s Get:21 http://ftpmaster.internal/ubuntu noble/universe s390x python3-scipy s390x 1.11.4-6 [20.1 MB] 330s Get:22 http://ftpmaster.internal/ubuntu noble/universe s390x python3-biom-format s390x 2.1.15.2-3 [190 kB] 330s Fetched 44.5 MB in 12s (3610 kB/s) 330s Selecting previously unselected package libaec0:s390x. 330s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51726 files and directories currently installed.) 330s Preparing to unpack .../00-libaec0_1.1.2-1_s390x.deb ... 330s Unpacking libaec0:s390x (1.1.2-1) ... 330s Selecting previously unselected package libblas3:s390x. 330s Preparing to unpack .../01-libblas3_3.12.0-3_s390x.deb ... 331s Unpacking libblas3:s390x (3.12.0-3) ... 331s Selecting previously unselected package libgfortran5:s390x. 331s Preparing to unpack .../02-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 331s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 331s Selecting previously unselected package libsz2:s390x. 331s Preparing to unpack .../03-libsz2_1.1.2-1_s390x.deb ... 331s Unpacking libsz2:s390x (1.1.2-1) ... 331s Selecting previously unselected package libhdf5-103-1:s390x. 331s Preparing to unpack .../04-libhdf5-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 331s Unpacking libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 331s Selecting previously unselected package libhdf5-hl-100:s390x. 331s Preparing to unpack .../05-libhdf5-hl-100_1.10.10+repack-3ubuntu1_s390x.deb ... 331s Unpacking libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 331s Selecting previously unselected package liblapack3:s390x. 331s Preparing to unpack .../06-liblapack3_3.12.0-3_s390x.deb ... 331s Unpacking liblapack3:s390x (3.12.0-3) ... 331s Selecting previously unselected package liblbfgsb0:s390x. 331s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1_s390x.deb ... 331s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1) ... 331s Selecting previously unselected package liblzf1:s390x. 331s Preparing to unpack .../08-liblzf1_3.6-4_s390x.deb ... 331s Unpacking liblzf1:s390x (3.6-4) ... 331s Selecting previously unselected package python3-all. 331s Preparing to unpack .../09-python3-all_3.12.1-0ubuntu2_s390x.deb ... 331s Unpacking python3-all (3.12.1-0ubuntu2) ... 331s Selecting previously unselected package python3-numpy. 331s Preparing to unpack .../10-python3-numpy_1%3a1.24.2-2_s390x.deb ... 331s Unpacking python3-numpy (1:1.24.2-2) ... 331s Selecting previously unselected package python3-h5py-serial. 331s Preparing to unpack .../11-python3-h5py-serial_3.10.0-1ubuntu1_s390x.deb ... 331s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ... 331s Selecting previously unselected package python3-h5py. 331s Preparing to unpack .../12-python3-h5py_3.10.0-1ubuntu1_all.deb ... 331s Unpacking python3-h5py (3.10.0-1ubuntu1) ... 331s Selecting previously unselected package python3-colorama. 331s Preparing to unpack .../13-python3-colorama_0.4.6-4_all.deb ... 331s Unpacking python3-colorama (0.4.6-4) ... 331s Selecting previously unselected package python3-click. 331s Preparing to unpack .../14-python3-click_8.1.6-1_all.deb ... 331s Unpacking python3-click (8.1.6-1) ... 331s Selecting previously unselected package python3-dateutil. 331s Preparing to unpack .../15-python3-dateutil_2.8.2-3_all.deb ... 331s Unpacking python3-dateutil (2.8.2-3) ... 331s Selecting previously unselected package python3-pandas-lib:s390x. 331s Preparing to unpack .../16-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_s390x.deb ... 331s Unpacking python3-pandas-lib:s390x (2.1.4+dfsg-4ubuntu2) ... 332s Selecting previously unselected package python3-pandas. 332s Preparing to unpack .../17-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 332s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 332s Selecting previously unselected package python3-decorator. 332s Preparing to unpack .../18-python3-decorator_5.1.1-5_all.deb ... 332s Unpacking python3-decorator (5.1.1-5) ... 332s Selecting previously unselected package python3-scipy. 332s Preparing to unpack .../19-python3-scipy_1.11.4-6_s390x.deb ... 332s Unpacking python3-scipy (1.11.4-6) ... 333s Selecting previously unselected package python3-biom-format. 333s Preparing to unpack .../20-python3-biom-format_2.1.15.2-3_s390x.deb ... 333s Unpacking python3-biom-format (2.1.15.2-3) ... 333s Selecting previously unselected package autopkgtest-satdep. 333s Preparing to unpack .../21-2-autopkgtest-satdep.deb ... 333s Unpacking autopkgtest-satdep (0) ... 333s Setting up python3-colorama (0.4.6-4) ... 333s Setting up python3-all (3.12.1-0ubuntu2) ... 333s Setting up python3-click (8.1.6-1) ... 333s Setting up libaec0:s390x (1.1.2-1) ... 333s Setting up python3-decorator (5.1.1-5) ... 333s Setting up libblas3:s390x (3.12.0-3) ... 333s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 333s Setting up liblzf1:s390x (3.6-4) ... 333s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 333s Setting up python3-dateutil (2.8.2-3) ... 333s Setting up libsz2:s390x (1.1.2-1) ... 333s Setting up liblapack3:s390x (3.12.0-3) ... 333s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 333s Setting up python3-numpy (1:1.24.2-2) ... 335s Setting up libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 335s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1) ... 335s Setting up libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 335s Setting up python3-scipy (1.11.4-6) ... 338s Setting up python3-pandas-lib:s390x (2.1.4+dfsg-4ubuntu2) ... 338s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ... 339s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 343s Setting up python3-h5py (3.10.0-1ubuntu1) ... 344s Setting up python3-biom-format (2.1.15.2-3) ... 344s Setting up autopkgtest-satdep (0) ... 344s Processing triggers for man-db (2.12.0-3) ... 345s Processing triggers for libc-bin (2.39-0ubuntu2) ... 347s (Reading database ... 56315 files and directories currently installed.) 347s Removing autopkgtest-satdep (0) ... 355s autopkgtest [13:04:14]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import biom; print(biom)" ; done 355s autopkgtest [13:04:14]: test autodep8-python3: [----------------------- 355s Testing with python3.12: 356s 356s autopkgtest [13:04:15]: test autodep8-python3: -----------------------] 357s autodep8-python3 PASS (superficial) 357s autopkgtest [13:04:16]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 357s autopkgtest [13:04:16]: @@@@@@@@@@@@@@@@@@@@ summary 357s run-unit-test PASS 357s autodep8-python3 PASS (superficial) 369s Creating nova instance adt-noble-s390x-python-biom-format-20240322-125819-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240321.img (UUID f7ee8f0f-480f-4014-94f0-3be2a19e259d)... 369s Creating nova instance adt-noble-s390x-python-biom-format-20240322-125819-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240321.img (UUID f7ee8f0f-480f-4014-94f0-3be2a19e259d)...