0s autopkgtest [21:59:04]: starting date and time: 2024-03-23 21:59:04+0000 0s autopkgtest [21:59:04]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [21:59:04]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gjmbuh67/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:netcdf4-python,src:curl,src:gnutls28,src:hdf5,src:libpsl,src:netcdf,src:nettle,src:openssl,src:orthanc-python --apt-upgrade python-ase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=netcdf4-python/1.6.5-1build2 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu3 libpsl/0.21.2-1.1 netcdf/1:4.9.2-5ubuntu3 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-20.secgroup --name adt-noble-s390x-python-ase-20240323-215903-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 109s autopkgtest [22:00:53]: testbed dpkg architecture: s390x 109s autopkgtest [22:00:53]: testbed apt version: 2.7.12 109s autopkgtest [22:00:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 110s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 111s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 111s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 111s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 111s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4028 kB] 111s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [654 kB] 111s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 111s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 111s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 111s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4150 kB] 112s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 112s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB] 112s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 114s Fetched 9565 kB in 3s (3782 kB/s) 114s Reading package lists... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Calculating upgrade... 117s The following packages will be REMOVED: 117s libssl3 117s The following NEW packages will be installed: 117s libssl3t64 117s The following packages have been kept back: 117s curl 117s The following packages will be upgraded: 117s openssl 117s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 117s Need to get 2685 kB of archives. 117s After this operation, 239 kB of additional disk space will be used. 117s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB] 118s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB] 118s Fetched 2685 kB in 1s (3013 kB/s) 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 118s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ... 118s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 119s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 119s wget depends on libssl3 (>= 3.0.0). 119s tnftp depends on libssl3 (>= 3.0.0). 119s tcpdump depends on libssl3 (>= 3.0.0). 119s systemd-resolved depends on libssl3 (>= 3.0.0). 119s systemd depends on libssl3 (>= 3.0.0). 119s sudo depends on libssl3 (>= 3.0.0). 119s s390-tools depends on libssl3 (>= 3.0.0). 119s rsync depends on libssl3 (>= 3.0.0). 119s python3-cryptography depends on libssl3 (>= 3.0.0). 119s openssh-server depends on libssl3 (>= 3.0.10). 119s openssh-client depends on libssl3 (>= 3.0.10). 119s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 119s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 119s libssh-4:s390x depends on libssl3 (>= 3.0.0). 119s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 119s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 119s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 119s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 119s libnvme1 depends on libssl3 (>= 3.0.0). 119s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 119s libkmod2:s390x depends on libssl3 (>= 3.0.0). 119s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 119s libcurl4:s390x depends on libssl3 (>= 3.0.0). 119s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 119s kmod depends on libssl3 (>= 3.0.0). 119s dhcpcd-base depends on libssl3 (>= 3.0.0). 119s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 119s 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 119s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 119s Selecting previously unselected package libssl3t64:s390x. 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52159 files and directories currently installed.) 119s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ... 119s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ... 119s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ... 119s Setting up openssl (3.0.13-0ubuntu2) ... 119s Processing triggers for man-db (2.12.0-3) ... 119s Processing triggers for libc-bin (2.39-0ubuntu6) ... 119s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 120s Unknown architecture, assuming PC-style ttyS0 120s sh: Attempting to set up Debian/Ubuntu apt sources automatically 120s sh: Distribution appears to be Ubuntu 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s eatmydata is already the newest version (131-1). 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s dbus is already the newest version (1.14.10-4ubuntu1). 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s rng-tools-debian is already the newest version (2.4). 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s The following packages will be REMOVED: 122s cloud-init* python3-configobj* python3-debconf* 122s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 122s After this operation, 3256 kB disk space will be freed. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52172 files and directories currently installed.) 123s Removing cloud-init (24.1.2-0ubuntu1) ... 123s Removing python3-configobj (5.0.8-3) ... 123s Removing python3-debconf (1.5.86) ... 123s Processing triggers for man-db (2.12.0-3) ... 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51783 files and directories currently installed.) 123s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 124s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 124s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 124s invoke-rc.d: policy-rc.d denied execution of try-restart. 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s linux-generic is already the newest version (6.8.0-11.11+1). 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 125s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 125s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 127s Reading package lists... 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s Calculating upgrade... 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s autopkgtest [22:01:12]: rebooting testbed after setup commands that affected boot 142s autopkgtest [22:01:26]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 145s autopkgtest [22:01:29]: @@@@@@@@@@@@@@@@@@@@ apt-source python-ase 148s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-ase 3.22.1-4 (dsc) [2586 B] 148s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-ase 3.22.1-4 (tar) [2837 kB] 148s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-ase 3.22.1-4 (diff) [15.4 kB] 149s gpgv: Signature made Sun Jan 7 11:26:42 2024 UTC 149s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 149s gpgv: Can't check signature: No public key 149s dpkg-source: warning: cannot verify inline signature for ./python-ase_3.22.1-4.dsc: no acceptable signature found 149s dpkg-source: warning: diff 'src/debian/patches/2629.patch' patches file src/ase/optimize/test/systems.py more than once 149s autopkgtest [22:01:33]: testing package python-ase version 3.22.1-4 149s autopkgtest [22:01:33]: build not needed 153s autopkgtest [22:01:37]: test command1: preparing testbed 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Starting pkgProblemResolver with broken count: 0 158s Starting 2 pkgProblemResolver with broken count: 0 158s Done 158s The following additional packages will be installed: 158s ase blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 158s fonts-font-awesome fonts-glyphicons-halflings fonts-lyx libaec0 libblas3 158s libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 158s libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libimagequant0 libjbig0 158s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui 158s liblapack3 liblbfgsb0 liblcms2-2 libnetcdf19 libopenjp2-7 libqhull-r8.0 158s libraqm0 libsharpyuv0 libsymspg2 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 158s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 158s python-matplotlib-data python3-all python3-appdirs python3-ase 158s python3-brotli python3-cftime python3-contourpy python3-cycler 158s python3-dateutil python3-decorator python3-fonttools python3-fs 158s python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 158s python3-matplotlib python3-mpmath python3-netcdf4 python3-numpy 158s python3-packaging python3-pil python3-pil.imagetk python3-pluggy 158s python3-pycodcif python3-pytest python3-pytest-mock python3-scipy 158s python3-spglib python3-sympy python3-tk python3-ufolib2 python3-unicodedata2 158s tk8.6-blt2.5 unicode-data x11-common 158s Suggested packages: 158s python-ase-doc blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 158s python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg 158s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 158s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 158s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 158s python3-gmpy2 gcc gfortran python3-dev python-pil-doc python-pytest-mock-doc 158s python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 158s Recommended packages: 158s javascript-common python3-bs4 python3-cssselect python3-html5lib 158s python3-olefile g++ | c++-compiler isympy-common 158s The following NEW packages will be installed: 158s ase autopkgtest-satdep blt fontconfig-config fonts-dejavu-core 158s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-lyx 158s libaec0 libblas3 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 158s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 158s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery 158s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libnetcdf19 libopenjp2-7 158s libqhull-r8.0 libraqm0 libsharpyuv0 libsymspg2 libsz2 libtcl8.6 libtiff6 158s libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 158s libxss1 python-matplotlib-data python3-all python3-appdirs python3-ase 158s python3-brotli python3-cftime python3-contourpy python3-cycler 158s python3-dateutil python3-decorator python3-fonttools python3-fs 158s python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 158s python3-matplotlib python3-mpmath python3-netcdf4 python3-numpy 158s python3-packaging python3-pil python3-pil.imagetk python3-pluggy 158s python3-pycodcif python3-pytest python3-pytest-mock python3-scipy 158s python3-spglib python3-sympy python3-tk python3-ufolib2 python3-unicodedata2 158s tk8.6-blt2.5 unicode-data x11-common 158s 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. 158s Need to get 72.1 MB/72.1 MB of archives. 158s After this operation, 324 MB of additional disk space will be used. 158s Get:1 /tmp/autopkgtest.3PgpJi/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [744 B] 158s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 159s Get:3 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 159s Get:4 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 159s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 159s Get:6 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 159s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 159s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 159s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 160s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x python3-numpy s390x 1:1.24.2-2 [5137 kB] 161s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 161s Get:12 http://ftpmaster.internal/ubuntu noble/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1 [28.4 kB] 161s Get:13 http://ftpmaster.internal/ubuntu noble/universe s390x python3-scipy s390x 1.11.4-6 [20.1 MB] 164s Get:14 http://ftpmaster.internal/ubuntu noble/universe s390x libsymspg2 s390x 2.2.0-3 [214 kB] 164s Get:15 http://ftpmaster.internal/ubuntu noble/universe s390x python3-spglib s390x 2.2.0-3 [28.7 kB] 164s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 164s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 164s Get:18 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lyx all 2.4.0~RC3-1 [170 kB] 164s Get:19 http://ftpmaster.internal/ubuntu noble/universe s390x python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 164s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x python3-dateutil all 2.8.2-3 [79.2 kB] 164s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 164s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 164s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libimagequant0 s390x 2.18.0-1 [42.9 kB] 164s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 164s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 164s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB] 164s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libopenjp2-7 s390x 2.5.0-2 [169 kB] 164s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 164s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 164s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libraqm0 s390x 0.10.1-1 [14.4 kB] 164s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 164s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 164s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 164s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 164s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 164s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libwebpdemux2 s390x 1.3.2-0.4 [12.4 kB] 164s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libwebpmux3 s390x 1.3.2-0.4 [25.4 kB] 164s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x python3-pil s390x 10.2.0-1 [519 kB] 164s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 164s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 164s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 164s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 164s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 164s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 164s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 164s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.14-1 [833 kB] 164s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-7 [661 kB] 164s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x blt s390x 2.5.3+dfsg-7 [4826 B] 164s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x python3-tk s390x 3.11.5-1 [114 kB] 164s Get:50 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pil.imagetk s390x 10.2.0-1 [9578 B] 164s Get:51 http://ftpmaster.internal/ubuntu noble/universe s390x python3-contourpy s390x 1.0.7-1build2 [271 kB] 164s Get:52 http://ftpmaster.internal/ubuntu noble/universe s390x python3-cycler all 0.11.0-2 [8202 B] 164s Get:53 http://ftpmaster.internal/ubuntu noble/universe s390x python3-brotli s390x 1.1.0-2 [383 kB] 164s Get:54 http://ftpmaster.internal/ubuntu noble/universe s390x python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 164s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x python3-mpmath all 1.2.1-3 [421 kB] 164s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x python3-sympy all 1.12-7 [3966 kB] 165s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x python3-appdirs all 1.4.4-4 [10.9 kB] 165s Get:58 http://ftpmaster.internal/ubuntu noble/universe s390x python3-fs all 2.4.16-3 [91.1 kB] 165s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libxslt1.1 s390x 1.1.39-0exp1 [170 kB] 165s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x python3-lxml s390x 5.1.0-1 [2268 kB] 165s Get:61 http://ftpmaster.internal/ubuntu noble/universe s390x python3-lz4 s390x 4.0.2+dfsg-1build2 [26.8 kB] 165s Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x python3-unicodedata2 s390x 15.1.0+ds-1 [370 kB] 165s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x python3-all s390x 3.12.1-0ubuntu2 [908 B] 165s Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x unicode-data all 15.1.0-1 [8878 kB] 166s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x python3-fonttools s390x 4.46.0-1 [1668 kB] 166s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x python3-kiwisolver s390x 1.4.4-2 [53.3 kB] 166s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x python3-packaging all 23.2-1 [40.6 kB] 166s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x libqhull-r8.0 s390x 2020.2-6 [181 kB] 166s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x python3-matplotlib s390x 3.6.3-1ubuntu3 [7346 kB] 167s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x python3-ase all 3.22.1-4 [1405 kB] 167s Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x ase all 3.22.1-4 [31.3 kB] 167s Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x libaec0 s390x 1.1.2-1 [25.7 kB] 167s Get:73 http://ftpmaster.internal/ubuntu noble/universe s390x libsz2 s390x 1.1.2-1 [5346 B] 167s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-103-1 s390x 1.10.10+repack-3ubuntu1 [1425 kB] 167s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-100 s390x 1.10.10+repack-3ubuntu1 [57.5 kB] 167s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x libnetcdf19 s390x 1:4.9.2-3ubuntu1 [506 kB] 167s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x python3-cftime s390x 1.6.3-1build1 [342 kB] 167s Get:78 http://ftpmaster.internal/ubuntu noble/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 167s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x python3-netcdf4 s390x 1.6.5-1build1 [851 kB] 168s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pluggy all 1.4.0-1 [20.4 kB] 168s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pycodcif s390x 3.8.1+dfsg-1build1 [81.4 kB] 168s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pytest all 7.4.4-1 [305 kB] 168s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x python3-pytest-mock all 3.12.0-1.1 [11.3 kB] 168s Fetched 72.1 MB in 10s (7399 kB/s) 168s Selecting previously unselected package fonts-font-awesome. 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51728 files and directories currently installed.) 168s Preparing to unpack .../00-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 168s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 168s Selecting previously unselected package fonts-glyphicons-halflings. 168s Preparing to unpack .../01-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 168s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 168s Selecting previously unselected package libjs-bootstrap. 168s Preparing to unpack .../02-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 168s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 168s Selecting previously unselected package libjs-jquery. 168s Preparing to unpack .../03-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 168s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 168s Selecting previously unselected package libjs-jquery-ui. 168s Preparing to unpack .../04-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 168s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 168s Selecting previously unselected package libblas3:s390x. 168s Preparing to unpack .../05-libblas3_3.12.0-3_s390x.deb ... 168s Unpacking libblas3:s390x (3.12.0-3) ... 168s Selecting previously unselected package libgfortran5:s390x. 168s Preparing to unpack .../06-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 168s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 168s Selecting previously unselected package liblapack3:s390x. 168s Preparing to unpack .../07-liblapack3_3.12.0-3_s390x.deb ... 168s Unpacking liblapack3:s390x (3.12.0-3) ... 168s Selecting previously unselected package python3-numpy. 168s Preparing to unpack .../08-python3-numpy_1%3a1.24.2-2_s390x.deb ... 168s Unpacking python3-numpy (1:1.24.2-2) ... 169s Selecting previously unselected package python3-decorator. 169s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ... 169s Unpacking python3-decorator (5.1.1-5) ... 169s Selecting previously unselected package liblbfgsb0:s390x. 169s Preparing to unpack .../10-liblbfgsb0_3.0+dfsg.4-1_s390x.deb ... 169s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1) ... 169s Selecting previously unselected package python3-scipy. 169s Preparing to unpack .../11-python3-scipy_1.11.4-6_s390x.deb ... 169s Unpacking python3-scipy (1.11.4-6) ... 169s Selecting previously unselected package libsymspg2:s390x. 169s Preparing to unpack .../12-libsymspg2_2.2.0-3_s390x.deb ... 169s Unpacking libsymspg2:s390x (2.2.0-3) ... 169s Selecting previously unselected package python3-spglib. 169s Preparing to unpack .../13-python3-spglib_2.2.0-3_s390x.deb ... 169s Unpacking python3-spglib (2.2.0-3) ... 169s Selecting previously unselected package fonts-dejavu-mono. 169s Preparing to unpack .../14-fonts-dejavu-mono_2.37-8_all.deb ... 169s Unpacking fonts-dejavu-mono (2.37-8) ... 169s Selecting previously unselected package fonts-dejavu-core. 169s Preparing to unpack .../15-fonts-dejavu-core_2.37-8_all.deb ... 169s Unpacking fonts-dejavu-core (2.37-8) ... 170s Selecting previously unselected package fonts-lyx. 170s Preparing to unpack .../16-fonts-lyx_2.4.0~RC3-1_all.deb ... 170s Unpacking fonts-lyx (2.4.0~RC3-1) ... 170s Selecting previously unselected package python-matplotlib-data. 170s Preparing to unpack .../17-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 170s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 170s Selecting previously unselected package python3-dateutil. 170s Preparing to unpack .../18-python3-dateutil_2.8.2-3_all.deb ... 170s Unpacking python3-dateutil (2.8.2-3) ... 170s Selecting previously unselected package libfreetype6:s390x. 170s Preparing to unpack .../19-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 170s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 170s Selecting previously unselected package libgomp1:s390x. 170s Preparing to unpack .../20-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 170s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 170s Selecting previously unselected package libimagequant0:s390x. 170s Preparing to unpack .../21-libimagequant0_2.18.0-1_s390x.deb ... 170s Unpacking libimagequant0:s390x (2.18.0-1) ... 170s Selecting previously unselected package libjpeg-turbo8:s390x. 170s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 170s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 170s Selecting previously unselected package libjpeg8:s390x. 170s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_s390x.deb ... 170s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 170s Selecting previously unselected package liblcms2-2:s390x. 170s Preparing to unpack .../24-liblcms2-2_2.14-2_s390x.deb ... 170s Unpacking liblcms2-2:s390x (2.14-2) ... 170s Selecting previously unselected package libopenjp2-7:s390x. 170s Preparing to unpack .../25-libopenjp2-7_2.5.0-2_s390x.deb ... 170s Unpacking libopenjp2-7:s390x (2.5.0-2) ... 170s Selecting previously unselected package libgraphite2-3:s390x. 170s Preparing to unpack .../26-libgraphite2-3_1.3.14-2_s390x.deb ... 170s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 170s Selecting previously unselected package libharfbuzz0b:s390x. 170s Preparing to unpack .../27-libharfbuzz0b_8.3.0-2_s390x.deb ... 170s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 170s Selecting previously unselected package libraqm0:s390x. 170s Preparing to unpack .../28-libraqm0_0.10.1-1_s390x.deb ... 170s Unpacking libraqm0:s390x (0.10.1-1) ... 170s Selecting previously unselected package libdeflate0:s390x. 170s Preparing to unpack .../29-libdeflate0_1.19-1_s390x.deb ... 170s Unpacking libdeflate0:s390x (1.19-1) ... 170s Selecting previously unselected package libjbig0:s390x. 170s Preparing to unpack .../30-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 170s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 170s Selecting previously unselected package libsharpyuv0:s390x. 170s Preparing to unpack .../31-libsharpyuv0_1.3.2-0.4_s390x.deb ... 170s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 170s Selecting previously unselected package libwebp7:s390x. 170s Preparing to unpack .../32-libwebp7_1.3.2-0.4_s390x.deb ... 170s Unpacking libwebp7:s390x (1.3.2-0.4) ... 170s Selecting previously unselected package libtiff6:s390x. 170s Preparing to unpack .../33-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 170s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 170s Selecting previously unselected package libwebpdemux2:s390x. 170s Preparing to unpack .../34-libwebpdemux2_1.3.2-0.4_s390x.deb ... 170s Unpacking libwebpdemux2:s390x (1.3.2-0.4) ... 170s Selecting previously unselected package libwebpmux3:s390x. 170s Preparing to unpack .../35-libwebpmux3_1.3.2-0.4_s390x.deb ... 170s Unpacking libwebpmux3:s390x (1.3.2-0.4) ... 170s Selecting previously unselected package python3-pil:s390x. 170s Preparing to unpack .../36-python3-pil_10.2.0-1_s390x.deb ... 170s Unpacking python3-pil:s390x (10.2.0-1) ... 170s Selecting previously unselected package libtcl8.6:s390x. 170s Preparing to unpack .../37-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 170s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 170s Selecting previously unselected package fontconfig-config. 170s Preparing to unpack .../38-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 170s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 170s Selecting previously unselected package libfontconfig1:s390x. 170s Preparing to unpack .../39-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 170s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 170s Selecting previously unselected package libxrender1:s390x. 170s Preparing to unpack .../40-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 170s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 170s Selecting previously unselected package libxft2:s390x. 170s Preparing to unpack .../41-libxft2_2.3.6-1_s390x.deb ... 170s Unpacking libxft2:s390x (2.3.6-1) ... 170s Selecting previously unselected package x11-common. 170s Preparing to unpack .../42-x11-common_1%3a7.7+23ubuntu2_all.deb ... 170s Unpacking x11-common (1:7.7+23ubuntu2) ... 170s Selecting previously unselected package libxss1:s390x. 170s Preparing to unpack .../43-libxss1_1%3a1.2.3-1build2_s390x.deb ... 170s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 170s Selecting previously unselected package libtk8.6:s390x. 170s Preparing to unpack .../44-libtk8.6_8.6.14-1_s390x.deb ... 170s Unpacking libtk8.6:s390x (8.6.14-1) ... 170s Selecting previously unselected package tk8.6-blt2.5. 170s Preparing to unpack .../45-tk8.6-blt2.5_2.5.3+dfsg-7_s390x.deb ... 170s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 170s Selecting previously unselected package blt. 170s Preparing to unpack .../46-blt_2.5.3+dfsg-7_s390x.deb ... 170s Unpacking blt (2.5.3+dfsg-7) ... 170s Selecting previously unselected package python3-tk:s390x. 170s Preparing to unpack .../47-python3-tk_3.11.5-1_s390x.deb ... 170s Unpacking python3-tk:s390x (3.11.5-1) ... 170s Selecting previously unselected package python3-pil.imagetk:s390x. 170s Preparing to unpack .../48-python3-pil.imagetk_10.2.0-1_s390x.deb ... 170s Unpacking python3-pil.imagetk:s390x (10.2.0-1) ... 170s Selecting previously unselected package python3-contourpy. 170s Preparing to unpack .../49-python3-contourpy_1.0.7-1build2_s390x.deb ... 170s Unpacking python3-contourpy (1.0.7-1build2) ... 170s Selecting previously unselected package python3-cycler. 170s Preparing to unpack .../50-python3-cycler_0.11.0-2_all.deb ... 170s Unpacking python3-cycler (0.11.0-2) ... 170s Selecting previously unselected package python3-brotli. 170s Preparing to unpack .../51-python3-brotli_1.1.0-2_s390x.deb ... 170s Unpacking python3-brotli (1.1.0-2) ... 170s Selecting previously unselected package python3-ufolib2. 170s Preparing to unpack .../52-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 170s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 170s Selecting previously unselected package python3-mpmath. 170s Preparing to unpack .../53-python3-mpmath_1.2.1-3_all.deb ... 170s Unpacking python3-mpmath (1.2.1-3) ... 170s Selecting previously unselected package python3-sympy. 170s Preparing to unpack .../54-python3-sympy_1.12-7_all.deb ... 170s Unpacking python3-sympy (1.12-7) ... 171s Selecting previously unselected package python3-appdirs. 171s Preparing to unpack .../55-python3-appdirs_1.4.4-4_all.deb ... 171s Unpacking python3-appdirs (1.4.4-4) ... 171s Selecting previously unselected package python3-fs. 171s Preparing to unpack .../56-python3-fs_2.4.16-3_all.deb ... 171s Unpacking python3-fs (2.4.16-3) ... 171s Selecting previously unselected package libxslt1.1:s390x. 171s Preparing to unpack .../57-libxslt1.1_1.1.39-0exp1_s390x.deb ... 171s Unpacking libxslt1.1:s390x (1.1.39-0exp1) ... 171s Selecting previously unselected package python3-lxml:s390x. 171s Preparing to unpack .../58-python3-lxml_5.1.0-1_s390x.deb ... 171s Unpacking python3-lxml:s390x (5.1.0-1) ... 171s Selecting previously unselected package python3-lz4. 171s Preparing to unpack .../59-python3-lz4_4.0.2+dfsg-1build2_s390x.deb ... 171s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 171s Selecting previously unselected package python3-unicodedata2. 171s Preparing to unpack .../60-python3-unicodedata2_15.1.0+ds-1_s390x.deb ... 171s Unpacking python3-unicodedata2 (15.1.0+ds-1) ... 171s Selecting previously unselected package python3-all. 171s Preparing to unpack .../61-python3-all_3.12.1-0ubuntu2_s390x.deb ... 171s Unpacking python3-all (3.12.1-0ubuntu2) ... 171s Selecting previously unselected package unicode-data. 171s Preparing to unpack .../62-unicode-data_15.1.0-1_all.deb ... 171s Unpacking unicode-data (15.1.0-1) ... 171s Selecting previously unselected package python3-fonttools. 171s Preparing to unpack .../63-python3-fonttools_4.46.0-1_s390x.deb ... 171s Unpacking python3-fonttools (4.46.0-1) ... 171s Selecting previously unselected package python3-kiwisolver. 171s Preparing to unpack .../64-python3-kiwisolver_1.4.4-2_s390x.deb ... 171s Unpacking python3-kiwisolver (1.4.4-2) ... 171s Selecting previously unselected package python3-packaging. 171s Preparing to unpack .../65-python3-packaging_23.2-1_all.deb ... 171s Unpacking python3-packaging (23.2-1) ... 171s Selecting previously unselected package libqhull-r8.0:s390x. 171s Preparing to unpack .../66-libqhull-r8.0_2020.2-6_s390x.deb ... 171s Unpacking libqhull-r8.0:s390x (2020.2-6) ... 171s Selecting previously unselected package python3-matplotlib. 171s Preparing to unpack .../67-python3-matplotlib_3.6.3-1ubuntu3_s390x.deb ... 171s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... 172s Selecting previously unselected package python3-ase. 172s Preparing to unpack .../68-python3-ase_3.22.1-4_all.deb ... 172s Unpacking python3-ase (3.22.1-4) ... 172s Selecting previously unselected package ase. 172s Preparing to unpack .../69-ase_3.22.1-4_all.deb ... 172s Unpacking ase (3.22.1-4) ... 172s Selecting previously unselected package libaec0:s390x. 172s Preparing to unpack .../70-libaec0_1.1.2-1_s390x.deb ... 172s Unpacking libaec0:s390x (1.1.2-1) ... 172s Selecting previously unselected package libsz2:s390x. 172s Preparing to unpack .../71-libsz2_1.1.2-1_s390x.deb ... 172s Unpacking libsz2:s390x (1.1.2-1) ... 172s Selecting previously unselected package libhdf5-103-1:s390x. 172s Preparing to unpack .../72-libhdf5-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 172s Unpacking libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 172s Selecting previously unselected package libhdf5-hl-100:s390x. 172s Preparing to unpack .../73-libhdf5-hl-100_1.10.10+repack-3ubuntu1_s390x.deb ... 172s Unpacking libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 172s Selecting previously unselected package libnetcdf19:s390x. 172s Preparing to unpack .../74-libnetcdf19_1%3a4.9.2-3ubuntu1_s390x.deb ... 172s Unpacking libnetcdf19:s390x (1:4.9.2-3ubuntu1) ... 172s Selecting previously unselected package python3-cftime. 172s Preparing to unpack .../75-python3-cftime_1.6.3-1build1_s390x.deb ... 172s Unpacking python3-cftime (1.6.3-1build1) ... 172s Selecting previously unselected package python3-iniconfig. 172s Preparing to unpack .../76-python3-iniconfig_1.1.1-2_all.deb ... 172s Unpacking python3-iniconfig (1.1.1-2) ... 172s Selecting previously unselected package python3-netcdf4. 172s Preparing to unpack .../77-python3-netcdf4_1.6.5-1build1_s390x.deb ... 172s Unpacking python3-netcdf4 (1.6.5-1build1) ... 172s Selecting previously unselected package python3-pluggy. 172s Preparing to unpack .../78-python3-pluggy_1.4.0-1_all.deb ... 172s Unpacking python3-pluggy (1.4.0-1) ... 172s Selecting previously unselected package python3-pycodcif. 172s Preparing to unpack .../79-python3-pycodcif_3.8.1+dfsg-1build1_s390x.deb ... 172s Unpacking python3-pycodcif (3.8.1+dfsg-1build1) ... 172s Selecting previously unselected package python3-pytest. 172s Preparing to unpack .../80-python3-pytest_7.4.4-1_all.deb ... 172s Unpacking python3-pytest (7.4.4-1) ... 172s Selecting previously unselected package python3-pytest-mock. 172s Preparing to unpack .../81-python3-pytest-mock_3.12.0-1.1_all.deb ... 172s Unpacking python3-pytest-mock (3.12.0-1.1) ... 172s Selecting previously unselected package autopkgtest-satdep. 172s Preparing to unpack .../82-1-autopkgtest-satdep.deb ... 172s Unpacking autopkgtest-satdep (0) ... 172s Setting up libgraphite2-3:s390x (1.3.14-2) ... 172s Setting up liblcms2-2:s390x (2.14-2) ... 172s Setting up python3-iniconfig (1.1.1-2) ... 172s Setting 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pluggy-1.4.0 -- /usr/bin/python3.12 195s 195s Libraries 195s ========= 195s 195s ase-3.22.1 /usr/lib/python3/dist-packages/ase 195s numpy-1.24.2 /usr/lib/python3/dist-packages/numpy 195s scipy-1.11.4 /usr/lib/python3/dist-packages/scipy 195s matplotlib-3.6.3 /usr/lib/python3/dist-packages/matplotlib 195s spglib-2.2.0 /usr/lib/python3/dist-packages/spglib 195s ase_ext not installed 195s flask not installed 195s psycopg2 not installed 195s pyamg not installed 195s 195s 195s Calculators 195s =========== 195s Config: No configuration file specified 195s Datafiles: ase-datafiles package not installed 195s 195s [ ] abinit not installed 195s [ ] aims not installed 195s [ ] asap not installed 195s [ ] castep not installed 195s [ ] cp2k not installed 195s [ ] dftb not installed 195s [ ] dftd3 not installed 195s [ ] elk not installed 195s [ ] espresso not installed 195s [ ] exciting not installed 195s [ ] gpaw not installed 195s [ ] gromacs not installed 195s [ ] lammpslib not installed 195s [ ] lammpsrun not installed 195s [ ] nwchem not installed 195s [ ] octopus not installed 195s [ ] openmx not installed 195s [ ] siesta not installed 195s [ ] vasp not installed 195s 195s * Use --calculators option to select calculators. 195s 195s * See "ase test --help-calculators" on how to configure calculators. 195s 195s * This listing only includes external calculators known by the test 195s system. Others are "configured" by setting an environment variable 195s like "ASE_xxx_COMMAND" in order to allow tests to run. Please see 195s the documentation of that individual calculator. 195s 195s 195s rootdir: /usr/lib/python3/dist-packages/ase/test 195s configfile: pytest.ini 195s plugins: mock-3.12.0 198s collecting ... collected 1963 items 198s 198s test_analysis.py::test_analysis PASSED [ 0%] 198s test_bader.py::test_bader PASSED [ 0%] 198s test_bandgap.py::test_bandgap PASSED [ 0%] 198s test_bandpath_kpts_axis.py::test_bandpath_kpts_axis PASSED [ 0%] 200s test_basin.py::test_basin PASSED [ 0%] 200s test_calc_outputs_big.py::test_properties_big PASSED [ 0%] 200s test_calc_properties.py::test_print_props[natoms] PASSED [ 0%] 200s test_calc_properties.py::test_print_props[energy] PASSED [ 0%] 200s test_calc_properties.py::test_print_props[energies] PASSED [ 0%] 201s test_calc_properties.py::test_print_props[free_energy] PASSED [ 0%] 201s test_calc_properties.py::test_print_props[forces] PASSED [ 0%] 201s test_calc_properties.py::test_print_props[stress] PASSED [ 0%] 201s 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bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[TRI2a] PASSED [ 34%] 218s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[TRI2b] PASSED [ 34%] 218s bandstructure/test_bandstructure_transform_mcl.py::test_bandstructure_transform_mcl PASSED [ 34%] 218s bandstructure/test_resolve_custom_kpoints.py::test_str PASSED [ 34%] 218s bandstructure/test_resolve_custom_kpoints.py::test_recognize_points_from_coords PASSED [ 34%] 218s bandstructure/test_resolve_custom_kpoints.py::test_autolabel_points_from_coords[kptcoords0] PASSED [ 34%] 218s bandstructure/test_resolve_custom_kpoints.py::test_autolabel_points_from_coords[kptcoords1] PASSED [ 34%] 218s bandstructure/test_resolve_custom_kpoints.py::test_bad_shape PASSED [ 34%] 218s bravais/test_2d_cell_pbc.py::test_bravais_2d_cell_pbc PASSED [ 34%] 218s bravais/test_classification_engine.py::test_generate_niggli_table[FCC-1] PASSED [ 34%] 218s 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build_/test_attach.py::test_attach_molecules PASSED [ 36%] 220s build_/test_attach.py::test_pbc PASSED [ 36%] 220s build_/test_attach.py::test_attach_to_surface PASSED [ 36%] 220s build_/test_attach.py::test_attach_randomly PASSED [ 36%] 220s build_/test_build_bulk.py::test_build_bulk PASSED [ 36%] 220s build_/test_bulk.py::test_bulk PASSED [ 36%] 220s build_/test_connected.py::test_split_biphenyl PASSED [ 36%] 220s build_/test_connected.py::test_connected_atoms PASSED [ 36%] 220s build_/test_connected.py::test_separate_dimer PASSED [ 36%] 220s build_/test_surface.py::test_surface PASSED [ 37%] 220s build_/test_surface_stack.py::test_surface_stack PASSED [ 37%] 220s build_/test_surface_terminations.py::test_surface_terminations PASSED [ 37%] 220s calculator/test_al.py::test_al[elk] SKIPPED (Not installed: elk) [ 37%] 221s calculator/test_al.py::test_al[openmx] SKIPPED (Not installed: openmx) [ 37%] 221s calculator/test_al.py::test_al[abinit] SKIPPED (Not installed: abinit) [ 37%] 221s calculator/test_al.py::test_al_old[aims] SKIPPED (use --calculators=...) [ 37%] 221s calculator/test_bond_polarizability.py::test_CC_bond PASSED [ 37%] 221s calculator/test_bond_polarizability.py::test_symmetry PASSED [ 37%] 221s calculator/test_bond_polarizability.py::test_2to3 PASSED [ 37%] 221s calculator/test_calculator.py::test_directory_and_label PASSED [ 37%] 221s calculator/test_calculator.py::test_deprecated_get_spin_polarized PASSED [ 37%] 221s calculator/test_ch4_energy.py::test_ch4[gamess_us] SKIPPED (use --ca...) [ 37%] 221s calculator/test_ch4_energy.py::test_ch4[gaussian] SKIPPED (use --cal...) [ 37%] 221s calculator/test_ch4_energy.py::test_ch4_reaction[siesta] SKIPPED (No...) [ 37%] 221s calculator/test_ch4_energy.py::test_ch4_reaction[openmx] SKIPPED (No...) [ 37%] 221s calculator/test_ch4_energy.py::test_ch4_reaction[octopus] SKIPPED (N...) [ 37%] 221s calculator/test_ch4_energy.py::test_ch4_reaction[nwchem] SKIPPED (No...) [ 37%] 221s calculator/test_ch4_energy.py::test_ch4_reaction[gpaw] SKIPPED (Not ...) 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[ 39%] 221s calculator/test_h2.py::test_h2dft[cp2k] SKIPPED (Not installed: cp2k) [ 39%] 221s calculator/test_h2_bond_force.py::test_h2_bond[siesta] SKIPPED (Not ...) [ 39%] 221s calculator/test_h2_bond_force.py::test_h2_bond[nwchem] SKIPPED (Not ...) [ 39%] 221s calculator/test_h2_bond_force.py::test_h2_bond[gpaw] SKIPPED (Not in...) [ 39%] 221s calculator/test_h2_bond_force.py::test_h2_bond[espresso] SKIPPED (No...) [ 39%] 221s calculator/test_h2_bond_force.py::test_h2_bond[cp2k] SKIPPED (Not in...) [ 39%] 221s calculator/test_h2_bond_force.py::test_h2_bond[abinit] SKIPPED (Not ...) [ 39%] 221s calculator/test_h2morse.py::test_gs_minimum PASSED [ 39%] 221s calculator/test_h2morse.py::test_gs_io_overlap PASSED [ 39%] 221s calculator/test_h2morse.py::test_excited_state PASSED [ 39%] 221s calculator/test_h2morse.py::test_excited_io PASSED [ 39%] 221s calculator/test_h2morse.py::test_traditional PASSED [ 39%] 221s calculator/test_lj.py::test_minimum_energy PASSED [ 39%] 221s calculator/test_lj.py::test_minimum_forces PASSED [ 39%] 221s calculator/test_lj.py::test_system_changes PASSED [ 39%] 221s calculator/test_lj.py::test_finite_difference PASSED [ 39%] 221s calculator/test_lj.py::test_bulk_energies PASSED [ 39%] 221s calculator/test_lj.py::test_bulk_forces PASSED [ 39%] 221s calculator/test_lj.py::test_bulk_stress PASSED [ 39%] 221s calculator/test_mopac.py::test_mopac SKIPPED (use --calculators=mopa...) 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[ 41%] 221s calculator/aims/test_aims_interface.py::test_aims_interface SKIPPED [ 41%] 221s calculator/aims/test_aims_parser.py::test_parse_socketio PASSED [ 41%] 221s calculator/aims/test_aims_parser.py::test_run PASSED [ 41%] 221s calculator/aims/test_version.py::test_get_aims_version PASSED [ 41%] 221s calculator/amber/test_amber.py::test_amber SKIPPED (Use --calculator...) 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[ 66%] 260s fio/test_gaussian.py::test_read_gaussian_regex PASSED [ 66%] 260s fio/test_gaussian_out.py::test_match_magic PASSED [ 66%] 260s fio/test_gaussian_out.py::test_gaussian_out PASSED [ 66%] 260s fio/test_gen.py::test_gen[gen-None-False] PASSED [ 66%] 260s fio/test_gen.py::test_gen[gen-None-pbc1] PASSED [ 66%] 260s fio/test_gen.py::test_gen[gen-None-True] PASSED [ 66%] 260s fio/test_gen.py::test_gen[gen-cell1-False] PASSED [ 66%] 260s fio/test_gen.py::test_gen[gen-cell1-pbc1] PASSED [ 66%] 260s fio/test_gen.py::test_gen[gen-cell1-True] PASSED [ 66%] 260s fio/test_gen.py::test_gen[dftb-None-False] PASSED [ 66%] 260s fio/test_gen.py::test_gen[dftb-None-pbc1] PASSED [ 66%] 260s fio/test_gen.py::test_gen[dftb-None-True] PASSED [ 66%] 260s fio/test_gen.py::test_gen[dftb-cell1-False] PASSED [ 67%] 260s fio/test_gen.py::test_gen[dftb-cell1-pbc1] PASSED [ 67%] 260s fio/test_gen.py::test_gen[dftb-cell1-True] PASSED [ 67%] 260s fio/test_gen.py::test_gen_multiple PASSED [ 67%] 260s fio/test_gpaw.py::test_gpaw_output PASSED [ 67%] 260s fio/test_gpumd.py::test_read_gpumd_input PASSED [ 67%] 260s fio/test_gpumd.py::test_load_gpumd_input PASSED [ 67%] 260s fio/test_gpumd.py::test_gpumd_input_write PASSED [ 67%] 260s fio/test_info.py::test_atoms_info_in_traj PASSED [ 67%] 260s fio/test_ioformats.py::test_manually PASSED [ 67%] 260s fio/test_ioformats.py::test_ioformat[abinit-in] PASSED [ 67%] 260s fio/test_ioformats.py::test_ioformat[abinit-out] PASSED [ 67%] 260s fio/test_ioformats.py::test_ioformat[aims] PASSED [ 67%] 260s fio/test_ioformats.py::test_ioformat[aims-output] PASSED [ 67%] 260s fio/test_ioformats.py::test_ioformat[bundletrajectory] PASSED [ 67%] 260s fio/test_ioformats.py::test_ioformat[castep-castep] PASSED [ 67%] 260s fio/test_ioformats.py::test_ioformat[castep-cell] PASSED [ 67%] 260s fio/test_ioformats.py::test_ioformat[castep-geom] PASSED [ 67%] 260s fio/test_ioformats.py::test_ioformat[castep-md] PASSED [ 67%] 260s fio/test_ioformats.py::test_ioformat[castep-phonon] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[cfg] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[cif] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[cmdft] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[cml] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[cp2k-dcd] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[cp2k-restart] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[crystal] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[cube] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[dacapo-text] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[db] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[dftb] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[dlp4] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[dlp-history] PASSED [ 68%] 260s fio/test_ioformats.py::test_ioformat[dmol-arc] PASSED [ 68%] 260s 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fio/test_ioformats.py::test_ioformat[gaussian-out] PASSED [ 69%] 260s fio/test_ioformats.py::test_ioformat[acemolecule-out] PASSED [ 69%] 260s fio/test_ioformats.py::test_ioformat[acemolecule-input] PASSED [ 69%] 260s fio/test_ioformats.py::test_ioformat[gen] PASSED [ 69%] 260s fio/test_ioformats.py::test_ioformat[gif] PASSED [ 69%] 260s fio/test_ioformats.py::test_ioformat[gpaw-out] PASSED [ 69%] 260s fio/test_ioformats.py::test_ioformat[gpumd] PASSED [ 69%] 260s fio/test_ioformats.py::test_ioformat[gpw] PASSED [ 69%] 260s fio/test_ioformats.py::test_ioformat[gromacs] PASSED [ 69%] 260s fio/test_ioformats.py::test_ioformat[gromos] PASSED [ 69%] 260s fio/test_ioformats.py::test_ioformat[html] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[json] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[jsv] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[lammps-dump-text] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[lammps-dump-binary] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[lammps-data] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[magres] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[mol] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[mp4] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[mustem] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[mysql] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[netcdftrajectory] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[nomad-json] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[nwchem-in] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[nwchem-out] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[octopus-in] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[proteindatabank] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[png] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[postgresql] PASSED [ 70%] 260s fio/test_ioformats.py::test_ioformat[pov] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[prismatic] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[py] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[sys] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[qbox] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[res] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[rmc6f] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[sdf] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[siesta-xv] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[struct] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[struct_out] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[traj] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[turbomole] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[turbomole-gradient] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[v-sim] PASSED [ 71%] 260s fio/test_ioformats.py::test_ioformat[vasp] PASSED [ 71%] 260s 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fio/test_lammpsdump.py::test_recognize_lammpsdump[ITEM: TIMESTEP] PASSED [ 72%] 260s fio/test_lammpsdump.py::test_recognize_lammpsdump[anything\nITEM: TIMESTEP\nanything] PASSED [ 72%] 260s fio/test_lammpsdump.py::test_lammpsdump_order PASSED [ 72%] 260s fio/test_lammpsdump.py::test_lammpsdump_element PASSED [ 72%] 260s fio/test_lammpsdump.py::test_lammpsdump_errors PASSED [ 72%] 260s fio/test_lammpsdump.py::test_lammpsdump_position_reading[xs ys zs-True] PASSED [ 72%] 260s fio/test_lammpsdump.py::test_lammpsdump_position_reading[xsu ysu zsu-True] PASSED [ 72%] 260s fio/test_lammpsdump.py::test_lammpsdump_position_reading[x y z-False] PASSED [ 73%] 260s fio/test_lammpsdump.py::test_lammpsdump_position_reading[xu yu zu-False] PASSED [ 73%] 260s fio/test_lammpsdump.py::test_lammpsdump_bounds[pp pp pp-expected0] PASSED [ 73%] 260s fio/test_lammpsdump.py::test_lammpsdump_bounds[ss mm ff-expected1] PASSED [ 73%] 260s fio/test_lammpsdump.py::test_lammpsdump_bounds[fs sm mf-expected2] PASSED [ 73%] 260s fio/test_lammpsdump.py::test_lammpsdump_bounds[sf ms ff-expected3] PASSED [ 73%] 260s fio/test_lammpsdump.py::test_lammpsdump_bounds[pp ms ff-expected4] PASSED [ 73%] 260s fio/test_lammpsdump.py::test_lammpsdump_bounds[ff pp ff-expected5] PASSED [ 73%] 260s fio/test_lammpsdump.py::test_lammpsdump_bounds[ff mm pp-expected6] PASSED [ 73%] 260s fio/test_lammpsdump.py::test_lammpsdump_bounds[pp ff pp-expected7] PASSED [ 73%] 260s fio/test_magmom.py::test_magmom PASSED [ 73%] 260s fio/test_magres.py::test_magres PASSED [ 73%] 260s fio/test_match_magic.py::test_match_magic PASSED [ 73%] 260s fio/test_mustem.py::test_mustem_several_elements PASSED [ 73%] 260s fio/test_mustem.py::test_mustem_single_elements PASSED [ 73%] 260s fio/test_netcdftrajectory.py::test_netcdftrajectory PASSED [ 73%] 260s fio/test_netcdftrajectory.py::test_netcdf_with_variable_atomic_numbers PASSED [ 73%] 260s fio/test_netcdftrajectory.py::test_netcdf_with_nonconsecutive_index PASSED [ 73%] 260s fio/test_netcdftrajectory.py::test_types_to_numbers_argument PASSED [ 73%] 260s fio/test_nomad.py::test_nomad PASSED [ 73%] 261s fio/test_nwchem.py::test_nwchem PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[abinit-in] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[abinit-out] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[acemolecule-input] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[acemolecule-out] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[aims] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[aims-output] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[bundletrajectory] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[castep-castep] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[castep-cell] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[castep-geom] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[castep-md] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[castep-phonon] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[cfg] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[cif] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[cmdft] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[cml] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[cp2k-dcd] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[cp2k-restart] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[crystal] PASSED [ 74%] 261s fio/test_oi.py::test_ioformat[cube] PASSED [ 75%] 261s fio/test_oi.py::test_ioformat[dacapo-text] PASSED [ 75%] 261s fio/test_oi.py::test_ioformat[db] PASSED [ 75%] 261s fio/test_oi.py::test_ioformat[dlp-history] PASSED [ 75%] 261s fio/test_oi.py::test_ioformat[dlp4] PASSED [ 75%] 261s fio/test_oi.py::test_ioformat[elk] PASSED [ 75%] 261s fio/test_oi.py::test_ioformat[elk-in] PASSED [ 75%] 261s fio/test_oi.py::test_ioformat[eps] PASSED [ 75%] 261s fio/test_oi.py::test_ioformat[espresso-in] PASSED [ 75%] 261s fio/test_oi.py::test_ioformat[espresso-out] PASSED [ 75%] 261s fio/test_oi.py::test_ioformat[exciting] PASSED [ 75%] 261s 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261s fio/test_oi.py::test_ioformat[lammps-dump-text] PASSED [ 76%] 261s fio/test_oi.py::test_ioformat[magres] PASSED [ 76%] 261s fio/test_oi.py::test_ioformat[mol] PASSED [ 76%] 261s fio/test_oi.py::test_ioformat[netcdftrajectory] PASSED [ 76%] 261s fio/test_oi.py::test_ioformat[nomad-json] PASSED [ 76%] 261s fio/test_oi.py::test_ioformat[nwchem-in] PASSED [ 76%] 261s fio/test_oi.py::test_ioformat[nwchem-out] PASSED [ 76%] 261s fio/test_oi.py::test_ioformat[octopus-in] PASSED [ 76%] 261s fio/test_oi.py::test_ioformat[png] PASSED [ 76%] 261s fio/test_oi.py::test_ioformat[pov] PASSED [ 76%] 261s fio/test_oi.py::test_ioformat[proteindatabank] PASSED [ 76%] 261s fio/test_oi.py::test_ioformat[py] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[qbox] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[res] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[rmc6f] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[sdf] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[siesta-xv] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[struct] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[struct_out] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[sys] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[traj] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[turbomole] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[turbomole-gradient] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[vasp] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[vasp-out] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[vasp-xdatcar] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[vasp-xml] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[wout] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[x3d] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[xsd] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[xsf] PASSED [ 77%] 261s fio/test_oi.py::test_ioformat[xtd] PASSED [ 78%] 261s fio/test_oi.py::test_ioformat[xyz] PASSED [ 78%] 261s fio/test_oldtraj.py::test_oldtraj PASSED [ 78%] 261s fio/test_openmx.py::test_openmx_out PASSED [ 78%] 261s fio/test_openmx.py::test_openmx_read_eigenvalues PASSED [ 78%] 261s fio/test_opls.py::test_opls_write_lammps PASSED [ 78%] 261s fio/test_parallel.py::test_parallel PASSED [ 78%] 261s fio/test_pdb_cell_io.py::test_pdb_cell_io PASSED [ 78%] 261s fio/test_pdb_extra.py::test_pdb_read PASSED [ 78%] 261s fio/test_pdb_extra.py::test_pdb_read_with_arrays PASSED [ 78%] 261s fio/test_pickle_bundle_trajectory.py::test_raises PASSED [ 78%] 261s fio/test_pickle_bundle_trajectory.py::test_write_read_pickle PASSED [ 78%] 262s fio/test_pickle_bundle_trajectory.py::test_write_read_bundle XFAIL (...) [ 78%] 262s fio/test_pickle_bundle_trajectory.py::test_append_pickle PASSED [ 78%] 262s fio/test_pickle_bundle_trajectory.py::test_append_bundle XFAIL (same...) [ 78%] 262s fio/test_pickle_bundle_trajectory.py::test_old_trajectory_conversion_utility PASSED [ 78%] 262s fio/test_pickle_bundle_trajectory.py::test_bundletrajectory_info PASSED [ 78%] 262s fio/test_povray.py::test_povray_io SKIPPED (povray not installed) [ 78%] 262s fio/test_povray.py::test_povray_highorder SKIPPED (povray not installed) [ 78%] 262s fio/test_povray.py::test_deprecated PASSED [ 79%] 262s fio/test_prismatic.py::test_write_read_cycle_xyz_prismatic PASSED [ 79%] 262s fio/test_prismatic.py::test_write_error PASSED [ 79%] 262s fio/test_pycodcif_read.py::test_pycodcif PASSED [ 79%] 262s fio/test_qbox.py::test_read_output PASSED [ 79%] 262s fio/test_qbox.py::test_format PASSED [ 79%] 262s fio/test_readwrite_errors.py::test_readwrite_errors PASSED [ 79%] 262s fio/test_readwrite_errors.py::test_parse_filename_with_at_in_ext PASSED [ 79%] 262s fio/test_readwrite_errors.py::test_parse_filename_with_at_in_path PASSED [ 79%] 262s 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fio/test_rmc6f.py::test_rmc6f_read_line_of_atoms_section_style_magnetic PASSED [ 80%] 262s fio/test_rmc6f.py::test_rmc6f_read_process_rmc6f_lines_to_pos_and_cell PASSED [ 80%] 262s fio/test_rmc6f.py::test_rmc6f_read_process_rmc6f_lines_to_pos_and_cell_padded_whitespace PASSED [ 80%] 262s fio/test_rmc6f.py::test_rmc6f_write_output_column_format PASSED [ 80%] 262s fio/test_rmc6f.py::test_rmc6f_write_output PASSED [ 80%] 262s fio/test_siesta.py::test_read_struct_out PASSED [ 80%] 262s fio/test_siesta.py::test_read_fdf PASSED [ 80%] 262s fio/test_siesta.py::test_read_xv PASSED [ 80%] 262s fio/test_traj_bytesio.py::test_traj_bytesio PASSED [ 80%] 262s fio/test_trajectory.py::test_trajectory PASSED [ 80%] 262s fio/test_trajectory.py::test_append_nonexistent_file PASSED [ 80%] 262s fio/test_trajectory.py::test_only_energy PASSED [ 80%] 262s fio/test_trajectory.py::test_constraint_and_momenta PASSED [ 80%] 262s fio/test_trajectory_heterogeneous.py::test_trajectory_heterogeneous PASSED [ 80%] 262s fio/test_turbomole.py::test_turbomole PASSED [ 80%] 262s fio/test_ulm.py::test_open_anypathlike PASSED [ 80%] 262s fio/test_ulm.py::test_ulm PASSED [ 80%] 262s fio/test_ulm.py::test_append PASSED [ 80%] 262s fio/test_ulm.py::test_ulm_copy PASSED [ 81%] 262s fio/test_ulm_dummy.py::test_dummy_write PASSED [ 81%] 262s fio/test_v_sim.py::test_v_sim PASSED [ 81%] 262s fio/test_vasp_structure.py::TestXdatcarRoundtrip::test_roundtrip PASSED [ 81%] 262s fio/test_vasp_structure.py::TestXdatcarRoundtrip::test_roundtrip_single_atoms PASSED [ 81%] 262s fio/test_vasp_structure.py::TestXdatcarRoundtrip::test_typeerror PASSED [ 81%] 262s fio/test_vasp_structure.py::test_wrap PASSED [ 81%] 262s fio/test_wout.py::test_wout PASSED [ 81%] 262s fio/test_wout.py::test_wout_all PASSED [ 81%] 262s fio/test_xsd_bond.py::test_xsd_bond PASSED [ 81%] 263s fio/test_xsf_spec.py::test_xsf_spec PASSED [ 81%] 263s fio/test_xyz.py::test_single_write_and_read PASSED [ 81%] 263s fio/test_xyz.py::test_single_write_with_forces PASSED [ 81%] 263s fio/test_xyz.py::test_single_write_and_read_with_comment PASSED [ 81%] 263s fio/test_xyz.py::test_single_write_with_newline_comment[xyz] PASSED [ 81%] 263s fio/test_xyz.py::test_single_write_with_newline_comment[extxyz] PASSED [ 81%] 263s fio/test_xyz.py::test_multiple_write_and_read PASSED [ 81%] 263s forcefields/test_acn.py::test_acn PASSED [ 81%] 263s forcefields/test_aic.py::test_aic PASSED [ 81%] 263s forcefields/test_combine_mm.py::test_combine_mm PASSED [ 82%] 268s forcefields/test_combine_mm2.py::test_combine_mm2 PASSED [ 82%] 270s forcefields/test_counterions.py::test_counterions PASSED [ 82%] 270s forcefields/test_forceqmmm.py::test_qm_buffer_mask PASSED [ 82%] 270s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs0] PASSED [ 82%] 270s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs1] PASSED [ 82%] 270s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs2] PASSED [ 82%] 270s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs3] PASSED [ 82%] 270s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs4] PASSED [ 82%] 270s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs5] PASSED [ 82%] 270s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs6] PASSED [ 82%] 270s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs7] PASSED [ 82%] 270s forcefields/test_forceqmmm.py::test_rescaled_calculator PASSED [ 82%] 273s forcefields/test_forceqmmm.py::test_forceqmmm PASSED [ 82%] 273s forcefields/test_forceqmmm.py::test_export_xyz PASSED [ 82%] 273s forcefields/test_forceqmmm.py::test_set_masks_from_region PASSED [ 82%] 273s forcefields/test_forceqmmm.py::test_import_xyz PASSED [ 82%] 274s forcefields/test_qmmm.py::test_qmmm PASSED [ 82%] 274s forcefields/test_qmmm_acn.py::test_qmmm_acn PASSED [ 82%] 276s forcefields/test_rattle.py::test_rattle PASSED [ 82%] 277s forcefields/test_rattle_linear.py::test_rattle_linear PASSED [ 83%] 277s forcefields/test_tip4p.py::test_tip4p PASSED [ 83%] 277s forcefields/test_tipnp.py::test_tipnp PASSED [ 83%] 277s ga/test_add_candidates.py::test_add_candidates PASSED [ 83%] 280s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] PASSED [ 83%] 284s ga/test_bulk_operators.py::test_bulk_operators[0] PASSED [ 83%] 284s ga/test_chain_operators.py::test_chain_operators[0] PASSED [ 83%] 284s ga/test_create_database.py::test_create_database PASSED [ 83%] 284s ga/test_cutandsplicepairing.py::test_cutandsplicepairing[0] PASSED [ 83%] 284s ga/test_database_logic.py::test_database_logic[0] PASSED [ 83%] 284s ga/test_element_operators.py::test_element_operators[0] PASSED [ 83%] 285s ga/test_film_operators.py::test_film_operators[0] PASSED [ 83%] 285s ga/test_mutations.py::test_mutations[0] PASSED [ 83%] 285s ga/test_particle_comparators.py::test_particle_comparators[0] PASSED [ 83%] 285s ga/test_particle_operators.py::test_particle_operators[0] PASSED [ 83%] 285s ga/test_slab_operators.py::test_cut_splice[0] PASSED [ 83%] 285s ga/test_slab_operators.py::test_random_composition_mutation[0] PASSED [ 83%] 285s ga/test_slab_operators.py::test_random_element_mutation[0] PASSED [ 83%] 285s ga/test_slab_operators.py::test_neighborhood_element_mutation[0] PASSED [ 83%] 285s ga/test_slab_operators.py::test_random_permutation[0] PASSED [ 84%] 285s ga/test_standardcomparator.py::test_standardcomparator PASSED [ 84%] 285s ga/test_utilities.py::test_utilities PASSED [ 84%] 285s gui/test_run.py::test_nanotube SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_nanoparticle SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_color SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_settings SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_rotate SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_open_and_save SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_export_graphics[None] SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_export_graphics[output.png] SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_export_graphics[output.eps] SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_export_graphics[output.pov] SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_export_graphics[output.traj] SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_export_graphics[output.traj@0] SKIPPED (no dis...) [ 84%] 285s gui/test_run.py::test_fracocc SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_povray SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_select_atoms SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_modify_element SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_modify_tag SKIPPED (no display) [ 84%] 285s gui/test_run.py::test_modify_magmom SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_repeat SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_surface SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_movie SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_reciprocal SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_bad_reciprocal SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_add_atoms SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_cell_editor SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_constrain SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_quickinfo[atoms0] SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_quickinfo[atoms1] SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_quickinfo[atoms2] SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_quickinfo[atoms3] SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_clipboard_copy SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_clipboard_cut_paste SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_clipboard_paste_onto_empty SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_clipboard_paste_onto_existing SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_clipboard_paste_invalid[] SKIPPED (no display) [ 85%] 285s gui/test_run.py::test_clipboard_paste_invalid[invalid_atoms] SKIPPED [ 85%] 285s gui/test_run.py::test_clipboard_paste_invalid[[1, 2, 3]] SKIPPED (no...) [ 85%] 285s gui/test_run.py::test_callbacks SKIPPED (no display) [ 86%] 285s lammpsdata/test_lammpsdata_read.py::test_lammpsdata_read PASSED [ 86%] 287s md/test_CO2linear_Au111_langevin.py::test_CO2linear_Au111_langevin PASSED [ 86%] 287s md/test_ce_curvature.py::test_curvature1 PASSED [ 86%] 288s md/test_ce_curvature.py::test_curvature2 PASSED [ 86%] 288s md/test_ce_logging.py::test_logging PASSED [ 86%] 289s md/test_ce_potentiostat.py::test_potentiostat PASSED [ 86%] 289s md/test_ce_potentiostat.py::test_potentiostat_no_fs PASSED [ 86%] 289s md/test_fixrotation.py::test_fixrotation_asap SKIPPED (could not imp...) [ 86%] 289s md/test_idealgas.py::test_idealgas PASSED [ 86%] 291s md/test_langevin_switching.py::test_langevin_switching PASSED [ 86%] 291s md/test_maxwellboltzmann.py::test_maxwellboltzmann PASSED [ 86%] 291s md/test_md.py::test_md PASSED [ 86%] 292s md/test_md_logger.py::test_optimizer[FIRE] PASSED [ 86%] 292s md/test_md_logger.py::test_optimizer[BFGS] PASSED [ 86%] 292s md/test_md_logger.py::test_md[cls_and_kwargs0] PASSED [ 86%] 292s md/test_md_logger.py::test_md[cls_and_kwargs1] PASSED [ 86%] 292s md/test_md_logger_interval.py::test_optimization_log_and_trajectory_length[FIRE] PASSED [ 86%] 293s md/test_md_logger_interval.py::test_optimization_log_and_trajectory_length[BFGS] PASSED [ 86%] 293s md/test_md_logger_interval.py::test_md_log_and_trajectory_length[VelocityVerlet-kwargs0-1] PASSED [ 87%] 293s md/test_md_logger_interval.py::test_md_log_and_trajectory_length[VelocityVerlet-kwargs0-2] PASSED [ 87%] 293s md/test_md_logger_interval.py::test_md_log_and_trajectory_length[Langevin-kwargs1-1] PASSED [ 87%] 293s md/test_md_logger_interval.py::test_md_log_and_trajectory_length[Langevin-kwargs1-2] PASSED [ 87%] 293s md/test_nvt_npt.py::test_nvtberendsen SKIPPED (could not import 'asa...) [ 87%] 293s md/test_nvt_npt.py::test_nptberendsen SKIPPED (could not import 'asa...) [ 87%] 293s md/test_nvt_npt.py::test_npt SKIPPED (could not import 'asap3': No m...) [ 87%] 293s md/test_phonon_md_init.py::test_phonon_md_init SKIPPED (could not im...) [ 87%] 293s md/test_velocity_distribution.py::test_stationary PASSED [ 87%] 293s md/test_velocity_distribution.py::test_stationary_propagate PASSED [ 87%] 293s md/test_velocity_distribution.py::test_zero_rotation PASSED [ 87%] 293s md/test_verlet_thermostats_asap.py::test_verlet_thermostats_asap SKIPPED [ 87%] 293s neb/test_COCu111.py::test_COCu111 PASSED [ 87%] 295s neb/test_COCu111_2.py::test_COCu111_2 PASSED [ 87%] 295s neb/test_autoneb.py::test_autoneb SKIPPED (could not import 'asap3':...) [ 87%] 313s neb/test_dynamic_neb.py::test_dynamic_neb PASSED [ 87%] 313s neb/test_idpp.py::test_idpp PASSED [ 87%] 313s neb/test_interpolate_images.py::test_interpolate_images_default PASSED [ 87%] 313s neb/test_interpolate_images.py::test_interpolate_images_fixed PASSED [ 87%] 313s neb/test_interpolate_images.py::test_interpolate_images_scaled_coord PASSED [ 87%] 313s neb/test_interpolate_images.py::test_interpolate_images_cell PASSED [ 88%] 313s neb/test_interpolate_images.py::test_interpolate_images_cell_default_interpolate_cell_scaled_coord PASSED [ 88%] 315s neb/test_neb_tr.py::test_neb_tr PASSED [ 88%] 318s neb/test_precon_neb.py::test_neb_methods[aseneb-BFGS-None-None] PASSED [ 88%] 320s neb/test_precon_neb.py::test_neb_methods[improvedtangent-BFGS-None-None] PASSED [ 88%] 323s neb/test_precon_neb.py::test_neb_methods[spline-NEBOptimizer-None-ODE] PASSED [ 88%] 325s neb/test_precon_neb.py::test_neb_methods[string-NEBOptimizer-Exp-ODE] PASSED [ 88%] 326s neb/test_precon_neb.py::test_neb_optimizers[ODE] PASSED [ 88%] 326s neb/test_precon_neb.py::test_neb_optimizers[static] PASSED [ 88%] 326s neb/test_precon_neb.py::test_precon_initialisation PASSED [ 88%] 326s neb/test_precon_neb.py::test_single_precon_initialisation PASSED [ 88%] 327s neb/test_precon_neb.py::test_precon_assembly PASSED [ 88%] 327s neb/test_precon_neb.py::test_spline_fit PASSED [ 88%] 327s neb/test_precon_neb.py::test_integrate_forces PASSED [ 88%] 327s neb/test_shared_calculator_neb.py::test_get_neb_method PASSED [ 88%] 327s neb/test_shared_calculator_neb.py::TestNEB::test_deprecations PASSED [ 88%] 327s neb/test_shared_calculator_neb.py::TestNEB::test_neb_default PASSED [ 88%] 327s neb/test_shared_calculator_neb.py::TestNEB::test_raising_parallel_errors PASSED [ 88%] 327s neb/test_shared_calculator_neb.py::TestNEB::test_no_shared_calc PASSED [ 88%] 327s neb/test_shared_calculator_neb.py::TestNEB::test_init_checks PASSED [ 88%] 327s neb/test_shared_calculator_neb.py::TestNEB::test_freeze_method PASSED [ 89%] 327s neighbor/test_neighbor.py::test_supercell PASSED [ 89%] 327s neighbor/test_neighbor.py::test_H2 PASSED [ 89%] 327s neighbor/test_neighbor.py::test_H2_shape_and_type PASSED [ 89%] 327s neighbor/test_neighbor.py::test_fcc PASSED [ 89%] 327s neighbor/test_neighbor.py::test_empty_neighbor_list PASSED [ 89%] 327s neighbor/test_neighbor.py::test_hexagonal_cell_and_large_cutoff PASSED [ 89%] 327s neighbor/test_neighbor.py::test_small_cell_and_large_cutoff PASSED [ 89%] 327s neighbor/test_neighbor_initialization.py::test_neighborlist_initialization PASSED [ 89%] 330s neighbor/test_neighbor_kernel.py::test_neighbor_kernel PASSED [ 89%] 330s optimize/test_bad_restart.py::test_bad_restart PASSED [ 89%] 332s optimize/test_fire.py::test_fire PASSED [ 89%] 332s optimize/test_minimahop.py::test_minimahop SKIPPED (could not import...) [ 89%] 332s optimize/test_optimizers.py::test_optimize[MDMin] PASSED [ 89%] 333s optimize/test_optimizers.py::test_optimize[FIRE] PASSED [ 89%] 333s optimize/test_optimizers.py::test_optimize[LBFGS] PASSED [ 89%] 333s optimize/test_optimizers.py::test_optimize[LBFGSLineSearch] PASSED [ 89%] 333s optimize/test_optimizers.py::test_optimize[BFGSLineSearch] PASSED [ 89%] 333s optimize/test_optimizers.py::test_optimize[BFGS] PASSED [ 89%] 333s optimize/test_optimizers.py::test_optimize[GoodOldQuasiNewton] PASSED [ 90%] 333s optimize/test_optimizers.py::test_optimize[GPMin] PASSED [ 90%] 334s optimize/test_optimizers.py::test_optimize[SciPyFminCG] PASSED [ 90%] 334s optimize/test_optimizers.py::test_optimize[SciPyFminBFGS] PASSED [ 90%] 334s optimize/test_optimizers.py::test_optimize[PreconLBFGS] PASSED [ 90%] 335s optimize/test_optimizers.py::test_optimize[PreconFIRE] PASSED [ 90%] 335s optimize/test_optimizers.py::test_optimize[Berny] SKIPPED (could not...) [ 90%] 335s optimize/test_optimizers.py::test_optimize[ODE12r] PASSED [ 90%] 335s optimize/test_optimizers.py::test_optimize[PreconODE12r] PASSED [ 90%] 335s optimize/test_replay.py::test_replay PASSED [ 90%] 337s precon/test_amin.py::test_precon_amin PASSED [ 90%] 355s precon/test_ff_and_precon_c60.py::test_opt_with_precon PASSED [ 90%] 357s precon/test_lbfgs.py::test_preconlbfgs PASSED [ 90%] 357s precon/test_precon_assembly.py::test_assembly_ref_atoms[None] PASSED [ 90%] 357s precon/test_precon_assembly.py::test_assembly_ref_atoms[C1] PASSED [ 90%] 357s precon/test_precon_assembly.py::test_assembly_ref_atoms[Exp] PASSED [ 90%] 357s precon/test_precon_assembly.py::test_assembly_ref_atoms[Pfrommer] PASSED [ 90%] 357s precon/test_precon_assembly.py::test_assembly_ref_atoms[FF] PASSED [ 90%] 357s precon/test_precon_assembly.py::test_assembly_ref_atoms[Exp_FF] PASSED [ 90%] 357s precon/test_precon_assembly.py::test_assembly_atoms[None] PASSED [ 90%] 357s precon/test_precon_assembly.py::test_assembly_atoms[C1] PASSED [ 91%] 357s precon/test_precon_assembly.py::test_assembly_atoms[Exp] PASSED [ 91%] 357s precon/test_precon_assembly.py::test_assembly_atoms[Pfrommer] PASSED [ 91%] 357s precon/test_precon_assembly.py::test_assembly_atoms[FF] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_atoms[Exp_FF] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_var_cell[None] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_var_cell[C1] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_var_cell[Exp] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_var_cell[Pfrommer] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_var_cell[FF] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_var_cell[Exp_FF] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_fixed_atoms[None] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_fixed_atoms[C1] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_fixed_atoms[Exp] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_fixed_atoms[Pfrommer] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_fixed_atoms[FF] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_assembly_fixed_atoms[Exp_FF] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_apply_atoms[None] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_apply_atoms[C1] PASSED [ 91%] 358s precon/test_precon_assembly.py::test_apply_atoms[Exp] PASSED [ 92%] 358s precon/test_precon_assembly.py::test_apply_atoms[Pfrommer] PASSED [ 92%] 358s precon/test_precon_assembly.py::test_apply_atoms[FF] PASSED [ 92%] 358s precon/test_precon_assembly.py::test_apply_atoms[Exp_FF] PASSED [ 92%] 358s precon/test_precon_assembly.py::test_apply_fixed_atoms[None] PASSED [ 92%] 359s precon/test_precon_assembly.py::test_apply_fixed_atoms[C1] PASSED [ 92%] 359s precon/test_precon_assembly.py::test_apply_fixed_atoms[Exp] PASSED [ 92%] 359s precon/test_precon_assembly.py::test_apply_fixed_atoms[Pfrommer] PASSED [ 92%] 359s precon/test_precon_assembly.py::test_apply_fixed_atoms[FF] PASSED [ 92%] 359s precon/test_precon_assembly.py::test_apply_fixed_atoms[Exp_FF] PASSED [ 92%] 359s precon/test_smallcell.py::test_precon_warn PASSED [ 92%] 359s precon/test_smallcell.py::test_precon_nowarn PASSED [ 92%] 360s precon/test_unitcellfilter.py::test_precon PASSED [ 92%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_sequence[0] PASSED [ 92%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_sequence[1] PASSED [ 92%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_sequence[3] PASSED [ 92%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_plot[1] PASSED [ 92%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_plot[5] PASSED [ 92%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_plot[None] PASSED [ 92%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_slicing PASSED [ 92%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_collection_equality PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[True] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[1] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[0.5] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[string] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[rawdos] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_addition PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_sample[options0] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_sample[options1] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_sample_grid[options0] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_sample_grid[options1] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_sample_empty PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_from_data[x0-weights0-bad_info0] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_from_data[x1-weights1-bad_info1] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_sum_all[collection_data0-collection_info0-expected0] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_sum_all[collection_data1-collection_info1-expected1] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_sum_all[collection_data2-collection_info2-expected2] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_sum_empty PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_total[collection_data0-collection_info0] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_total[collection_data1-collection_info1] PASSED [ 93%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_total[collection_data2-collection_info2] PASSED [ 94%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_select[select_info0-select_query0-select_result0-select_not_result0-sum_by_result0] PASSED [ 94%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_select[select_info1-select_query1-select_result1-None-sum_by_result1] PASSED [ 94%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_select[select_info2-select_query2-None-select_not_result2-sum_by_result2] PASSED [ 94%] 360s spectrum/test_doscollection.py::TestDOSCollection::test_select[select_info3-select_query3-select_result3-select_not_result3-sum_by_result3] PASSED [ 94%] 360s spectrum/test_doscollection.py::TestRawDOSCollection::test_init PASSED [ 94%] 360s spectrum/test_doscollection.py::TestGridDOSCollection::test_init_errors PASSED [ 94%] 360s spectrum/test_doscollection.py::TestGridDOSCollection::test_select PASSED [ 94%] 360s spectrum/test_doscollection.py::TestGridDOSCollection::test_sequence PASSED [ 94%] 360s spectrum/test_doscollection.py::TestGridDOSCollection::test_slicing PASSED [ 94%] 360s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x0-weights0-info0-None] PASSED [ 94%] 360s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x1-weights1-info1-None] PASSED [ 94%] 360s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x2-weights2-None-IndexError] PASSED [ 94%] 360s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x3-weights3-None-IndexError] PASSED [ 94%] 360s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x4-weights4-None-IndexError] PASSED [ 94%] 360s spectrum/test_doscollection.py::TestGridDOSCollection::test_plot_no_resample PASSED [ 94%] 360s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[None-expected0] PASSED [ 94%] 360s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[info1-expected1] PASSED [ 94%] 360s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[info2-expected2] PASSED [ 94%] 360s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[notadict-TypeError] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[False-TypeError] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info0-] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info1-key1: value1] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info2-key1: value1; key2: value2] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info3-xyz] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info4-xyz] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_init PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_access PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_copy PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_equality_wrongtype[True] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_equality_wrongtype[1] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_equality_wrongtype[0.5] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_equality_wrongtype[string] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_10-data_20-True] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_11-data_21-False] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_12-data_22-False] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_13-data_23-False] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_14-data_24-False] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_15-data_25-False] PASSED [ 95%] 360s spectrum/test_dosdata.py::TestRawDosData::test_addition PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data0-args0-result0] PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data1-args1-result1] PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data2-args2-result2] PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data3-args3-result3] PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data4-args4-result4] PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_sampling_error PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_sample_grid PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_plot[1] PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_plot[5] PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_plot[None] PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_plot_deltas[1] PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_plot_deltas[5] PASSED [ 96%] 360s spectrum/test_dosdata.py::TestRawDosData::test_plot_deltas[None] PASSED [ 96%] 360s spectrum/test_dosdata.py::TestGridDosData::test_init PASSED [ 96%] 360s spectrum/test_dosdata.py::TestGridDosData::test_access PASSED [ 96%] 360s spectrum/test_dosdata.py::TestGridDosData::test_copy PASSED [ 96%] 360s spectrum/test_dosdata.py::TestGridDosData::test_addition PASSED [ 96%] 360s spectrum/test_dosdata.py::TestGridDosData::test_check_spacing PASSED [ 96%] 360s spectrum/test_dosdata.py::TestGridDosData::test_resampling_consistency PASSED [ 96%] 360s spectrum/test_dosdata.py::TestGridDosData::test_plot[1] PASSED [ 97%] 360s spectrum/test_dosdata.py::TestGridDosData::test_plot[5] PASSED [ 97%] 360s spectrum/test_dosdata.py::TestGridDosData::test_plot[None] PASSED [ 97%] 360s spectrum/test_dosdata.py::TestGridDosData::test_plot_broad_dos PASSED [ 97%] 360s spectrum/test_dosdata.py::TestGridDosData::test_smearing_args_interpreter[inputs0-expected0] PASSED [ 97%] 360s spectrum/test_dosdata.py::TestGridDosData::test_smearing_args_interpreter[inputs1-expected1] PASSED [ 97%] 360s spectrum/test_dosdata.py::TestGridDosData::test_smearing_args_interpreter[inputs2-expected2] PASSED [ 97%] 360s spectrum/test_dosdata.py::TestGridDosData::test_smearing_args_interpreter[inputs3-expected3] PASSED [ 97%] 360s spectrum/test_dosdata.py::TestMultiDosData::test_addition PASSED [ 97%] 360s standardization/test_properties.py::test_calc_properties PASSED [ 97%] 362s transport/test_transport_calculator.py::test_transport_calculator PASSED [ 97%] 362s vibrations/test_albrecht.py::test_one_state PASSED [ 97%] 362s vibrations/test_albrecht.py::test_all_states PASSED [ 97%] 362s vibrations/test_albrecht.py::test_multiples PASSED [ 97%] 362s vibrations/test_albrecht.py::test_summary PASSED [ 97%] 363s vibrations/test_bond_polarizability_raman.py::test_bulk PASSED [ 97%] 363s vibrations/test_bond_polarizability_raman.py::test_bulk_kpts PASSED [ 97%] 363s vibrations/test_bond_polarizability_raman.py::test_c3 PASSED [ 97%] 363s vibrations/test_combine.py::test_combine PASSED [ 97%] 363s vibrations/test_folding.py::test_folding PASSED [ 98%] 363s vibrations/test_franck_condon.py::test_franck_condon PASSED [ 98%] 363s vibrations/test_franck_condon.py::test_ch4_all PASSED [ 98%] 364s vibrations/test_franck_condon.py::test_ch4_minfreq PASSED [ 98%] 364s vibrations/test_pickle2json.py::test_pickle2json PASSED [ 98%] 364s vibrations/test_placzek.py::test_summary PASSED [ 98%] 364s vibrations/test_placzek.py::test_names PASSED [ 98%] 364s vibrations/test_placzek.py::test_overlap PASSED [ 98%] 364s vibrations/test_placzek.py::test_compare_placzek_implementation_intensities PASSED [ 98%] 364s vibrations/test_profeta_albrecht.py::test_compare_placzek_albrecht_intensities PASSED [ 98%] 364s vibrations/test_vib.py::TestHarmonicVibrations::test_harmonic_vibrations PASSED [ 98%] 364s vibrations/test_vib.py::TestHarmonicVibrations::test_consistency_with_vibrationsdata PASSED [ 98%] 364s vibrations/test_vib.py::TestHarmonicVibrations::test_json_manipulation PASSED [ 98%] 364s vibrations/test_vib.py::TestHarmonicVibrations::test_vibrations_methods PASSED [ 98%] 364s vibrations/test_vib.py::TestHarmonicVibrations::test_vibrations_restart_dir PASSED [ 98%] 364s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask0-expected_indices0] PASSED [ 98%] 364s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask1-expected_indices1] PASSED [ 98%] 364s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask2-expected_indices2] PASSED [ 98%] 364s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask3-expected_indices3] PASSED [ 98%] 364s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask4-expected_indices4] PASSED [ 98%] 364s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask5-expected_indices5] PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_tabulate_energies PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_get_jmol_images[kwargs0-expected0] PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_init PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_energies_and_modes PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_imaginary_energies PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_zero_mass PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_new_mass PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_fixed_atoms PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_dos PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_pdos PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_todict PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_dict_roundtrip PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_dict_indices[indices0-expected_mask0] PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_dict_indices[None-expected_mask1] PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_jmol_roundtrip PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_bad_hessian PASSED [ 99%] 364s vibrations/test_vib.py::TestVibrationsData::test_bad_hessian2d PASSED [ 99%] 364s vibrations/test_vib.py::TestSlab::test_vibration_on_surface PASSED [ 99%] 364s vibrations/test_vibrations_example.py::test_vibrations_example PASSED [100%] 364s 364s =============================== warnings summary =============================== 364s :488 364s :488: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject 364s 364s test_doctests.py::test_doctest[ase.phasediagram] 364s test_pourbaix.py::test_pourbaix 364s /usr/lib/python3/dist-packages/ase/phasediagram.py:253: OptimizeWarning: Unrecognized options detected: {'lstsq': True}. These will be passed to HiGHS verbatim. 364s result = linprog(c=energies, 364s 364s test_forcecurve.py::test_forcecurve 364s /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). 364s EPOCH = datetime.datetime.utcfromtimestamp(0) 364s 364s test_parsemath.py: 109 warnings 364s constraints/test_parameteric_constr.py: 66 warnings 364s fio/test_aims_io.py: 66 warnings 364s /usr/lib/python3/dist-packages/ase/utils/parsemath.py:146: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead 364s if isinstance(node, ast.Num): # 364s 364s test_parsemath.py: 50 warnings 364s constraints/test_parameteric_constr.py: 64 warnings 364s fio/test_aims_io.py: 45 warnings 364s /usr/lib/python3/dist-packages/ase/utils/parsemath.py:147: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead 364s return node.n 364s 364s calculator/abinit/test_main.py::test_au[abinit-fhi] 364s /usr/lib/python3.12/pathlib.py:357: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 364s def __init__(self, *args): 364s Enable tracemalloc to get traceback where the object was allocated. 364s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 364s 364s forcefields/test_tipnp.py::test_tipnp 364s /usr/lib/python3/dist-packages/numpy/core/arrayprint.py:989: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 364s int_part, frac_part = zip(*(s.split('.') for s in strs)) 364s Enable tracemalloc to get traceback where the object was allocated. 364s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 364s 364s gui/test_run.py::test_settings 364s /usr/lib/python3/dist-packages/pluggy/_manager.py:514: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='w' encoding='UTF-8'> 364s plugins_to_remove = {plug for plug in remove_plugins if hasattr(plug, name)} 364s Enable tracemalloc to get traceback where the object was allocated. 364s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 364s 364s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 364s = 1659 passed, 300 skipped, 2 xfailed, 2 xpassed, 407 warnings in 169.87s (0:02:49) = 365s autopkgtest [22:05:09]: test command1: -----------------------] 366s autopkgtest [22:05:10]: test command1: - - - - - - - - - - results - - - - - - - - - - 366s command1 PASS 366s autopkgtest [22:05:10]: @@@@@@@@@@@@@@@@@@@@ summary 366s command1 PASS 381s Creating nova instance adt-noble-s390x-python-ase-20240323-215903-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240323.img (UUID 15bd59e1-c29b-45d7-aba1-73ff15182fb5)...