0s autopkgtest [09:28:51]: starting date and time: 2024-03-23 09:28:51+0000 0s autopkgtest [09:28:51]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [09:28:51]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._2qxqmy_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade optimir --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-18.secgroup --name adt-noble-s390x-optimir-20240323-092851-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 89s autopkgtest [09:30:20]: testbed dpkg architecture: s390x 89s autopkgtest [09:30:20]: testbed apt version: 2.7.12 89s autopkgtest [09:30:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup 90s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 90s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 91s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3972 kB] 92s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 92s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 92s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [651 kB] 92s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 92s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 92s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 92s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4148 kB] 93s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 93s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB] 93s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 94s Fetched 9504 kB in 4s (2690 kB/s) 95s Reading package lists... 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 98s Calculating upgrade... 98s The following packages will be REMOVED: 98s libssl3 98s The following NEW packages will be installed: 98s libssl3t64 98s The following packages have been kept back: 98s curl 98s The following packages will be upgraded: 98s libbsd0 libc-bin libc6 locales openssl 98s 5 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 98s Need to get 10.5 MB of archives. 98s After this operation, 241 kB of additional disk space will be used. 98s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libc6 s390x 2.39-0ubuntu6 [2847 kB] 99s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc-bin s390x 2.39-0ubuntu6 [654 kB] 99s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB] 99s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB] 99s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1 [46.7 kB] 99s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x locales all 2.39-0ubuntu6 [4232 kB] 100s Preconfiguring packages ... 100s Fetched 10.5 MB in 2s (5267 kB/s) 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 100s Preparing to unpack .../libc6_2.39-0ubuntu6_s390x.deb ... 100s Unpacking libc6:s390x (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 101s Setting up libc6:s390x (2.39-0ubuntu6) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 101s Preparing to unpack .../libc-bin_2.39-0ubuntu6_s390x.deb ... 101s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 101s Setting up libc-bin (2.39-0ubuntu6) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 101s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ... 101s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 101s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 101s wget depends on libssl3 (>= 3.0.0). 101s tnftp depends on libssl3 (>= 3.0.0). 101s tcpdump depends on libssl3 (>= 3.0.0). 101s systemd-resolved depends on libssl3 (>= 3.0.0). 101s systemd depends on libssl3 (>= 3.0.0). 101s sudo depends on libssl3 (>= 3.0.0). 101s s390-tools depends on libssl3 (>= 3.0.0). 101s rsync depends on libssl3 (>= 3.0.0). 101s python3-cryptography depends on libssl3 (>= 3.0.0). 101s openssh-server depends on libssl3 (>= 3.0.10). 101s openssh-client depends on libssl3 (>= 3.0.10). 101s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 101s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 101s libssh-4:s390x depends on libssl3 (>= 3.0.0). 101s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 101s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 101s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 101s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 101s libnvme1 depends on libssl3 (>= 3.0.0). 101s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 101s libkmod2:s390x depends on libssl3 (>= 3.0.0). 101s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 101s libcurl4:s390x depends on libssl3 (>= 3.0.0). 101s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 101s kmod depends on libssl3 (>= 3.0.0). 101s dhcpcd-base depends on libssl3 (>= 3.0.0). 101s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 101s 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 101s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 101s Selecting previously unselected package libssl3t64:s390x. 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52159 files and directories currently installed.) 101s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ... 101s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ... 101s Preparing to unpack .../libbsd0_0.12.1-1_s390x.deb ... 101s Unpacking libbsd0:s390x (0.12.1-1) over (0.11.8-1) ... 101s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 101s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 102s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ... 102s Setting up locales (2.39-0ubuntu6) ... 102s Generating locales (this might take a while)... 104s en_US.UTF-8... done 104s Generation complete. 104s Setting up openssl (3.0.13-0ubuntu2) ... 104s Setting up libbsd0:s390x (0.12.1-1) ... 104s Processing triggers for man-db (2.12.0-3) ... 104s Processing triggers for libc-bin (2.39-0ubuntu6) ... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 105s Unknown architecture, assuming PC-style ttyS0 105s sh: Attempting to set up Debian/Ubuntu apt sources automatically 105s sh: Distribution appears to be Ubuntu 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s eatmydata is already the newest version (131-1). 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s dbus is already the newest version (1.14.10-4ubuntu1). 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s rng-tools-debian is already the newest version (2.4). 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s The following packages will be REMOVED: 108s cloud-init* python3-configobj* python3-debconf* 108s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 108s After this operation, 3256 kB disk space will be freed. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52172 files and directories currently installed.) 108s Removing cloud-init (24.1.2-0ubuntu1) ... 108s Removing python3-configobj (5.0.8-3) ... 108s Removing python3-debconf (1.5.86) ... 108s Processing triggers for man-db (2.12.0-3) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51783 files and directories currently installed.) 109s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 109s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 109s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 109s invoke-rc.d: policy-rc.d denied execution of try-restart. 109s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s linux-generic is already the newest version (6.8.0-11.11+1). 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 110s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 110s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 112s Reading package lists... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s Calculating upgrade... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s autopkgtest [09:30:44]: rebooting testbed after setup commands that affected boot 131s autopkgtest [09:31:02]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 134s autopkgtest [09:31:05]: @@@@@@@@@@@@@@@@@@@@ apt-source optimir 136s Get:1 http://ftpmaster.internal/ubuntu noble/universe optimir 1.2-1 (dsc) [1984 B] 136s Get:2 http://ftpmaster.internal/ubuntu noble/universe optimir 1.2-1 (tar) [1748 kB] 136s Get:3 http://ftpmaster.internal/ubuntu noble/universe optimir 1.2-1 (diff) [3476 B] 136s gpgv: Signature made Fri Mar 18 14:54:34 2022 UTC 136s gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 136s gpgv: issuer "daissi@debian.org" 136s gpgv: Can't check signature: No public key 136s dpkg-source: warning: cannot verify inline signature for ./optimir_1.2-1.dsc: no acceptable signature found 136s autopkgtest [09:31:07]: testing package optimir version 1.2-1 136s autopkgtest [09:31:07]: build not needed 137s autopkgtest [09:31:08]: test run-unit-test: preparing testbed 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s Starting pkgProblemResolver with broken count: 1 142s Starting 2 pkgProblemResolver with broken count: 1 142s Investigating (0) optimir:s390x < none -> 1.2-1 @un puN Ib > 142s Broken optimir:s390x Depends on python3-biopython:s390x < none | 1.81+dfsg-3 @un uH > 142s Considering python3-biopython:s390x 1 as a solution to optimir:s390x 0 142s Re-Instated libblas3:s390x 142s Re-Instated libgfortran5:s390x 142s Re-Instated liblapack3:s390x 142s Re-Instated python3-numpy:s390x 142s Re-Instated libfreetype6:s390x 142s Re-Instated libgomp1:s390x 142s Re-Instated libimagequant0:s390x 142s Re-Instated libjpeg-turbo8:s390x 142s Re-Instated libjpeg8:s390x 142s Re-Instated liblcms2-2:s390x 142s Re-Instated libopenjp2-7:s390x 142s Re-Instated libgraphite2-3:s390x 142s Re-Instated libharfbuzz0b:s390x 142s Re-Instated libraqm0:s390x 142s Re-Instated libdeflate0:s390x 142s Re-Instated libjbig0:s390x 142s Re-Instated libsharpyuv0:s390x 142s Re-Instated libwebp7:s390x 142s Re-Instated libtiff6:s390x 142s Re-Instated libwebpdemux2:s390x 142s Re-Instated libwebpmux3:s390x 142s Re-Instated python3-pil:s390x 142s Re-Instated fonts-dejavu-mono:s390x 142s Re-Instated fonts-dejavu-core:s390x 142s Re-Instated fontconfig-config:s390x 142s Re-Instated libfontconfig1:s390x 142s Re-Instated libpixman-1-0:s390x 142s Re-Instated libxcb-render0:s390x 142s Re-Instated libxcb-shm0:s390x 142s Re-Instated libxrender1:s390x 142s Re-Instated libcairo2:s390x 142s Re-Instated python3-cairo:s390x 142s Re-Instated python3-freetype:s390x 142s Re-Instated python3-rlpycairo:s390x 142s Re-Instated fonts-dejavu-extra:s390x 142s Re-Instated libfontenc1:s390x 142s Re-Instated x11-common:s390x 142s Re-Instated xfonts-encodings:s390x 142s Re-Instated xfonts-utils:s390x 142s Re-Instated fonts-urw-base35:s390x 142s Re-Instated python3-reportlab:s390x 142s Re-Instated sgml-base:s390x 142s Re-Instated xml-core:s390x 142s Re-Instated w3c-sgml-lib:s390x 142s Re-Instated python3-biopython:s390x 142s Broken optimir:s390x Depends on python3-pysam:s390x < none @un H > 142s Broken optimir:s390x Depends on bowtie2:s390x < none @un H > 142s Broken optimir:s390x Depends on cutadapt:s390x < none | 4.4-1build1 @un uH > 142s Considering cutadapt:s390x 1 as a solution to optimir:s390x 0 142s Re-Instated pigz:s390x 142s Re-Instated python3-xopen:s390x 142s Re-Instated python3-dnaio:s390x 142s Re-Instated python3-cutadapt:s390x 142s Re-Instated cutadapt:s390x 142s Broken optimir:s390x Depends on samtools:s390x < none | 1.19.2-1 @un uH > 142s Considering samtools:s390x 1 as a solution to optimir:s390x 0 142s Re-Instated libhtscodecs2:s390x 142s Re-Instated libhts3:s390x 142s Re-Instated samtools:s390x 142s Done 142s Some packages could not be installed. This may mean that you have 142s requested an impossible situation or if you are using the unstable 142s distribution that some required packages have not yet been created 142s or been moved out of Incoming. 142s The following information may help to resolve the situation: 142s 142s The following packages have unmet dependencies: 142s optimir : Depends: python3-pysam but it is not installable 142s Depends: bowtie2 but it is not installable 142s E: Unable to correct problems, you have held broken packages. 142s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 143s Reading package lists... 143s Building dependency tree... 143s Reading state information... 143s Starting pkgProblemResolver with broken count: 1 143s Starting 2 pkgProblemResolver with broken count: 1 143s Investigating (0) optimir:s390x < none -> 1.2-1 @un puN Ib > 143s Broken optimir:s390x Depends on python3-biopython:s390x < none | 1.81+dfsg-3 @un uH > 143s Considering python3-biopython:s390x 1 as a solution to optimir:s390x 0 143s Re-Instated libblas3:s390x 143s Re-Instated libgfortran5:s390x 143s Re-Instated liblapack3:s390x 143s Re-Instated python3-numpy:s390x 143s Re-Instated libfreetype6:s390x 143s Re-Instated libgomp1:s390x 143s Re-Instated libimagequant0:s390x 143s Re-Instated libjpeg-turbo8:s390x 143s Re-Instated libjpeg8:s390x 143s Re-Instated liblcms2-2:s390x 143s Re-Instated libopenjp2-7:s390x 143s Re-Instated libgraphite2-3:s390x 143s Re-Instated libharfbuzz0b:s390x 143s Re-Instated libraqm0:s390x 143s Re-Instated libdeflate0:s390x 143s Re-Instated libjbig0:s390x 143s Re-Instated libsharpyuv0:s390x 143s Re-Instated libwebp7:s390x 143s Re-Instated libtiff6:s390x 143s Re-Instated libwebpdemux2:s390x 143s Re-Instated libwebpmux3:s390x 143s Re-Instated python3-pil:s390x 143s Re-Instated fonts-dejavu-mono:s390x 143s Re-Instated fonts-dejavu-core:s390x 143s Re-Instated fontconfig-config:s390x 143s Re-Instated libfontconfig1:s390x 143s Re-Instated libpixman-1-0:s390x 143s Re-Instated libxcb-render0:s390x 143s Re-Instated libxcb-shm0:s390x 143s Re-Instated libxrender1:s390x 143s Re-Instated libcairo2:s390x 143s Re-Instated python3-cairo:s390x 143s Re-Instated python3-freetype:s390x 143s Re-Instated python3-rlpycairo:s390x 143s Re-Instated fonts-dejavu-extra:s390x 143s Re-Instated libfontenc1:s390x 143s Re-Instated x11-common:s390x 143s Re-Instated xfonts-encodings:s390x 143s Re-Instated xfonts-utils:s390x 143s Re-Instated fonts-urw-base35:s390x 143s Re-Instated python3-reportlab:s390x 143s Re-Instated sgml-base:s390x 143s Re-Instated xml-core:s390x 143s Re-Instated w3c-sgml-lib:s390x 143s Re-Instated python3-biopython:s390x 143s Broken optimir:s390x Depends on python3-pysam:s390x < none @un H > 143s Broken optimir:s390x Depends on bowtie2:s390x < none @un H > 143s Broken optimir:s390x Depends on cutadapt:s390x < none | 4.4-1build1 @un uH > 143s Considering cutadapt:s390x 1 as a solution to optimir:s390x 0 143s Re-Instated pigz:s390x 143s Re-Instated python3-xopen:s390x 143s Re-Instated python3-dnaio:s390x 143s Re-Instated python3-cutadapt:s390x 143s Re-Instated cutadapt:s390x 143s Broken optimir:s390x Depends on samtools:s390x < none | 1.19.2-1 @un uH > 143s Considering samtools:s390x 1 as a solution to optimir:s390x 0 143s Re-Instated libhtscodecs2:s390x 143s Re-Instated libhts3:s390x 143s Re-Instated samtools:s390x 143s Done 143s Some packages could not be installed. This may mean that you have 143s requested an impossible situation or if you are using the unstable 143s distribution that some required packages have not yet been created 143s or been moved out of Incoming. 143s The following information may help to resolve the situation: 143s 143s The following packages have unmet dependencies: 143s optimir : Depends: python3-pysam but it is not installable 143s Depends: bowtie2 but it is not installable 143s E: Unable to correct problems, you have held broken packages. 143s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 143s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Starting pkgProblemResolver with broken count: 1 144s Starting 2 pkgProblemResolver with broken count: 1 144s Investigating (0) optimir:s390x < none -> 1.2-1 @un puN Ib > 144s Broken optimir:s390x Depends on python3-biopython:s390x < none | 1.81+dfsg-3 @un uH > 144s Considering python3-biopython:s390x 1 as a solution to optimir:s390x 9999 144s Re-Instated libblas3:s390x 144s Re-Instated libgfortran5:s390x 144s Re-Instated liblapack3:s390x 144s Re-Instated python3-numpy:s390x 144s Re-Instated libfreetype6:s390x 144s Re-Instated libgomp1:s390x 144s Re-Instated libimagequant0:s390x 144s Re-Instated libjpeg-turbo8:s390x 144s Re-Instated libjpeg8:s390x 144s Re-Instated liblcms2-2:s390x 144s Re-Instated libopenjp2-7:s390x 144s Re-Instated libgraphite2-3:s390x 144s Re-Instated libharfbuzz0b:s390x 144s Re-Instated libraqm0:s390x 144s Re-Instated libdeflate0:s390x 144s Re-Instated libjbig0:s390x 144s Re-Instated libsharpyuv0:s390x 144s Re-Instated libwebp7:s390x 144s Re-Instated libtiff6:s390x 144s Re-Instated libwebpdemux2:s390x 144s Re-Instated libwebpmux3:s390x 144s Re-Instated python3-pil:s390x 144s Re-Instated fonts-dejavu-mono:s390x 144s Re-Instated fonts-dejavu-core:s390x 144s Re-Instated fontconfig-config:s390x 144s Re-Instated libfontconfig1:s390x 144s Re-Instated libpixman-1-0:s390x 144s Re-Instated libxcb-render0:s390x 144s Re-Instated libxcb-shm0:s390x 144s Re-Instated libxrender1:s390x 144s Re-Instated libcairo2:s390x 144s Re-Instated python3-cairo:s390x 144s Re-Instated python3-freetype:s390x 144s Re-Instated python3-rlpycairo:s390x 144s Re-Instated fonts-dejavu-extra:s390x 144s Re-Instated libfontenc1:s390x 144s Re-Instated x11-common:s390x 144s Re-Instated xfonts-encodings:s390x 144s Re-Instated xfonts-utils:s390x 144s Re-Instated fonts-urw-base35:s390x 144s Re-Instated python3-reportlab:s390x 144s Re-Instated sgml-base:s390x 144s Re-Instated xml-core:s390x 144s Re-Instated w3c-sgml-lib:s390x 144s Re-Instated python3-biopython:s390x 144s Broken optimir:s390x Depends on python3-pysam:s390x < none @un H > 144s Broken optimir:s390x Depends on bowtie2:s390x < none @un H > 144s Broken optimir:s390x Depends on cutadapt:s390x < none | 4.4-1build1 @un uH > 144s Considering cutadapt:s390x 1 as a solution to optimir:s390x 9999 144s Re-Instated pigz:s390x 144s Re-Instated python3-xopen:s390x 144s Re-Instated python3-dnaio:s390x 144s Re-Instated python3-cutadapt:s390x 144s Re-Instated cutadapt:s390x 144s Broken optimir:s390x Depends on samtools:s390x < none | 1.19.2-1 @un uH > 144s Considering samtools:s390x 1 as a solution to optimir:s390x 9999 144s Re-Instated libhtscodecs2:s390x 144s Re-Instated libhts3:s390x 144s Re-Instated samtools:s390x 144s Done 144s Some packages could not be installed. This may mean that you have 144s requested an impossible situation or if you are using the unstable 144s distribution that some required packages have not yet been created 144s or been moved out of Incoming. 144s The following information may help to resolve the situation: 144s 144s The following packages have unmet dependencies: 144s optimir : Depends: python3-pysam but it is not installable 144s Depends: bowtie2 but it is not installable 144s E: Unable to correct problems, you have held broken packages. 144s run-unit-test FAIL badpkg 144s blame: optimir 144s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 144s autopkgtest [09:31:15]: @@@@@@@@@@@@@@@@@@@@ summary 144s run-unit-test FAIL badpkg 144s blame: optimir 144s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 155s Creating nova instance adt-noble-s390x-optimir-20240323-092851-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240322.img (UUID c8671f9a-0e89-48e3-af4f-3c79b89294e8)...