0s autopkgtest [19:58:57]: starting date and time: 2024-03-23 19:58:57+0000
  0s autopkgtest [19:58:57]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [19:58:57]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.s3vfemqj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:wxwidgets3.2,src:at-spi2-core,src:cups,src:curl,src:glib2.0,src:gnutls28,src:gst-plugins-bad1.0,src:gst-plugins-base1.0,src:gstreamer1.0,src:gtk+3.0,src:libpng1.6,src:libpsl,src:nettle,src:openssl,src:orc,src:orthanc-python,src:wp2latex --apt-upgrade openbabel --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=wxwidgets3.2/3.2.4+dfsg-4 at-spi2-core/2.51.90-3 cups/2.4.7-1.2ubuntu1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 gnutls28/3.8.3-1.1ubuntu2 gst-plugins-bad1.0/1.24.0-1ubuntu3 gst-plugins-base1.0/1.24.1-1 gstreamer1.0/1.24.1-1 gtk+3.0/3.24.41-1.1ubuntu3 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2 orc/1:0.4.38-1 orthanc-python/4.1+ds-2build3 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-s390x-10.secgroup --name adt-noble-s390x-openbabel-20240323-195857-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/
159s autopkgtest [20:01:36]: testbed dpkg architecture: s390x
159s autopkgtest [20:01:36]: testbed apt version: 2.7.12
159s autopkgtest [20:01:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup
160s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
160s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB]
160s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
160s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3981 kB]
161s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB]
161s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [652 kB]
161s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B]
161s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B]
161s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B]
161s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4246 kB]
161s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B]
161s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB]
161s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B]
163s Fetched 9613 kB in 2s (3980 kB/s)
163s Reading package lists...
166s Reading package lists...
167s Building dependency tree...
167s Reading state information...
167s Calculating upgrade...
167s The following packages will be REMOVED:
167s   libglib2.0-0 libssl3
167s The following NEW packages will be installed:
167s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
167s The following packages have been kept back:
167s   curl
167s The following packages will be upgraded:
167s   cloud-init debianutils fonts-ubuntu-console gir1.2-glib-2.0 libbsd0 libc-bin
167s   libc6 libglib2.0-data locales openssl python3-markupsafe
167s 11 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
167s Need to get 13.0 MB of archives.
167s After this operation, 388 kB of additional disk space will be used.
167s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x debianutils s390x 5.17 [90.1 kB]
167s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc6 s390x 2.39-0ubuntu6 [2847 kB]
168s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libc-bin s390x 2.39-0ubuntu6 [654 kB]
168s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gir1.2-glib-2.0 s390x 2.79.3-3ubuntu5 [180 kB]
168s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libglib2.0-0t64 s390x 2.79.3-3ubuntu5 [1566 kB]
168s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB]
168s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB]
168s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1 [46.7 kB]
168s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
168s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x locales all 2.39-0ubuntu6 [4232 kB]
168s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x xdg-user-dirs s390x 0.18-1 [18.5 kB]
168s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
168s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x python3-markupsafe s390x 2.1.5-1build1 [12.8 kB]
168s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x cloud-init all 24.1.2-0ubuntu1 [597 kB]
170s Preconfiguring packages ...
170s Fetched 13.0 MB in 1s (12.4 MB/s)
170s (Reading database ... 
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170s Preparing to unpack .../debianutils_5.17_s390x.deb ...
170s Unpacking debianutils (5.17) over (5.16) ...
170s Setting up debianutils (5.17) ...
170s (Reading database ... 
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170s Preparing to unpack .../libc6_2.39-0ubuntu6_s390x.deb ...
170s Unpacking libc6:s390x (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
170s Setting up libc6:s390x (2.39-0ubuntu6) ...
170s (Reading database ... 
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170s Preparing to unpack .../libc-bin_2.39-0ubuntu6_s390x.deb ...
170s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
170s Setting up libc-bin (2.39-0ubuntu6) ...
170s (Reading database ... 
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170s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_s390x.deb ...
170s Unpacking gir1.2-glib-2.0:s390x (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
170s dpkg: libglib2.0-0:s390x: dependency problems, but removing anyway as you requested:
170s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
170s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
170s  s390-tools depends on libglib2.0-0 (>= 2.77.0).
170s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
170s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
170s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
170s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
170s  libxmlb2:s390x depends on libglib2.0-0 (>= 2.54.0).
170s  libvolume-key1:s390x depends on libglib2.0-0 (>= 2.18.0).
170s  libudisks2-0:s390x depends on libglib2.0-0 (>= 2.75.3).
170s  libqrtr-glib0:s390x depends on libglib2.0-0 (>= 2.56).
170s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
170s  libqmi-glib5:s390x depends on libglib2.0-0 (>= 2.54.0).
170s  libpolkit-gobject-1-0:s390x depends on libglib2.0-0 (>= 2.38.0).
170s  libpolkit-agent-1-0:s390x depends on libglib2.0-0 (>= 2.38.0).
170s  libnetplan0:s390x depends on libglib2.0-0 (>= 2.75.3).
170s  libmm-glib0:s390x depends on libglib2.0-0 (>= 2.62.0).
170s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
170s  libmbim-glib4:s390x depends on libglib2.0-0 (>= 2.56).
170s  libjson-glib-1.0-0:s390x depends on libglib2.0-0 (>= 2.75.3).
170s  libjcat1:s390x depends on libglib2.0-0 (>= 2.75.3).
170s  libgusb2:s390x depends on libglib2.0-0 (>= 2.75.3).
170s  libgudev-1.0-0:s390x depends on libglib2.0-0 (>= 2.38.0).
170s  libgirepository-1.0-1:s390x depends on libglib2.0-0 (>= 2.79.0).
170s  libfwupd2:s390x depends on libglib2.0-0 (>= 2.79.0).
170s  libblockdev3:s390x depends on libglib2.0-0 (>= 2.42.2).
170s  libblockdev-utils3:s390x depends on libglib2.0-0 (>= 2.75.3).
170s  libblockdev-swap3:s390x depends on libglib2.0-0 (>= 2.42.2).
170s  libblockdev-part3:s390x depends on libglib2.0-0 (>= 2.42.2).
170s  libblockdev-nvme3:s390x depends on libglib2.0-0 (>= 2.42.2).
170s  libblockdev-mdraid3:s390x depends on libglib2.0-0 (>= 2.42.2).
170s  libblockdev-loop3:s390x depends on libglib2.0-0 (>= 2.42.2).
170s  libblockdev-fs3:s390x depends on libglib2.0-0 (>= 2.42.2).
170s  libblockdev-crypto3:s390x depends on libglib2.0-0 (>= 2.42.2).
170s  fwupd depends on libglib2.0-0 (>= 2.79.0).
170s  bolt depends on libglib2.0-0 (>= 2.56.0).
170s 
170s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 51778 files and directories currently installed.)
170s Removing libglib2.0-0:s390x (2.79.2-1~ubuntu1) ...
170s Selecting previously unselected package libglib2.0-0t64:s390x.
170s (Reading database ... 
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170s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_s390x.deb ...
170s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:s390x.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
170s removed '/var/lib/dpkg/info/libglib2.0-0:s390x.postrm'
170s Unpacking libglib2.0-0t64:s390x (2.79.3-3ubuntu5) ...
170s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ...
170s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ...
170s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested:
170s  wpasupplicant depends on libssl3 (>= 3.0.0).
170s  wget depends on libssl3 (>= 3.0.0).
170s  tnftp depends on libssl3 (>= 3.0.0).
170s  tcpdump depends on libssl3 (>= 3.0.0).
170s  systemd-resolved depends on libssl3 (>= 3.0.0).
170s  systemd depends on libssl3 (>= 3.0.0).
170s  sudo depends on libssl3 (>= 3.0.0).
170s  s390-tools depends on libssl3 (>= 3.0.0).
170s  rsync depends on libssl3 (>= 3.0.0).
170s  python3-cryptography depends on libssl3 (>= 3.0.0).
170s  openssh-server depends on libssl3 (>= 3.0.10).
170s  openssh-client depends on libssl3 (>= 3.0.10).
170s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
170s  libtss2-esys-3.0.2-0:s390x depends on libssl3 (>= 3.0.0).
170s  libsystemd-shared:s390x depends on libssl3 (>= 3.0.0).
170s  libssh-4:s390x depends on libssl3 (>= 3.0.0).
170s  libsasl2-modules:s390x depends on libssl3 (>= 3.0.0).
170s  libsasl2-2:s390x depends on libssl3 (>= 3.0.0).
170s  libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0).
170s  libnvme1 depends on libssl3 (>= 3.0.0).
170s  libkrb5-3:s390x depends on libssl3 (>= 3.0.0).
170s  libkmod2:s390x depends on libssl3 (>= 3.0.0).
170s  libfido2-1:s390x depends on libssl3 (>= 3.0.0).
170s  libcurl4:s390x depends on libssl3 (>= 3.0.0).
170s  libcryptsetup12:s390x depends on libssl3 (>= 3.0.0).
170s  kmod depends on libssl3 (>= 3.0.0).
170s  dhcpcd-base depends on libssl3 (>= 3.0.0).
170s  bind9-libs:s390x depends on libssl3 (>= 3.0.0).
170s 
170s (Reading database ... 
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(Reading database ... 51778 files and directories currently installed.)
170s Removing libssl3:s390x (3.0.10-1ubuntu4) ...
170s Selecting previously unselected package libssl3t64:s390x.
170s (Reading database ... 
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(Reading database ... 51767 files and directories currently installed.)
170s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu2_s390x.deb ...
170s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ...
170s Preparing to unpack .../1-libbsd0_0.12.1-1_s390x.deb ...
170s Unpacking libbsd0:s390x (0.12.1-1) over (0.11.8-1) ...
170s Preparing to unpack .../2-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
170s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
170s Preparing to unpack .../3-locales_2.39-0ubuntu6_all.deb ...
170s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
171s Selecting previously unselected package xdg-user-dirs.
171s Preparing to unpack .../4-xdg-user-dirs_0.18-1_s390x.deb ...
171s Unpacking xdg-user-dirs (0.18-1) ...
171s Preparing to unpack .../5-fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
171s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
171s Preparing to unpack .../6-python3-markupsafe_2.1.5-1build1_s390x.deb ...
171s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
171s Preparing to unpack .../7-cloud-init_24.1.2-0ubuntu1_all.deb ...
171s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
171s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
171s Setting up cloud-init (24.1.2-0ubuntu1) ...
172s Setting up xdg-user-dirs (0.18-1) ...
172s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ...
172s Setting up locales (2.39-0ubuntu6) ...
173s Generating locales (this might take a while)...
174s   en_US.UTF-8... done
174s Generation complete.
174s Setting up python3-markupsafe (2.1.5-1build1) ...
174s Setting up libglib2.0-0t64:s390x (2.79.3-3ubuntu5) ...
174s No schema files found: doing nothing.
174s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
174s Setting up gir1.2-glib-2.0:s390x (2.79.3-3ubuntu5) ...
174s Setting up openssl (3.0.13-0ubuntu2) ...
174s Setting up libbsd0:s390x (0.12.1-1) ...
174s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
175s Processing triggers for man-db (2.12.0-3) ...
175s Processing triggers for libc-bin (2.39-0ubuntu6) ...
176s Reading package lists...
176s Building dependency tree...
176s Reading state information...
176s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
177s Unknown architecture, assuming PC-style ttyS0
177s sh: Attempting to set up Debian/Ubuntu apt sources automatically
177s sh: Distribution appears to be Ubuntu
178s Reading package lists...
178s Building dependency tree...
178s Reading state information...
178s eatmydata is already the newest version (131-1).
178s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
178s Reading package lists...
178s Building dependency tree...
178s Reading state information...
179s dbus is already the newest version (1.14.10-4ubuntu1).
179s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
179s Reading package lists...
179s Building dependency tree...
179s Reading state information...
179s rng-tools-debian is already the newest version (2.4).
179s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
179s Reading package lists...
179s Building dependency tree...
179s Reading state information...
179s The following packages will be REMOVED:
179s   cloud-init* python3-configobj* python3-debconf*
180s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
180s After this operation, 3256 kB disk space will be freed.
180s (Reading database ... 
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(Reading database ... 51793 files and directories currently installed.)
180s Removing cloud-init (24.1.2-0ubuntu1) ...
180s Removing python3-configobj (5.0.8-3) ...
180s Removing python3-debconf (1.5.86) ...
180s Processing triggers for man-db (2.12.0-3) ...
181s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 51404 files and directories currently installed.)
181s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
181s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
182s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
182s invoke-rc.d: policy-rc.d denied execution of try-restart.
182s Reading package lists...
182s Building dependency tree...
182s Reading state information...
182s linux-generic is already the newest version (6.8.0-11.11+1).
182s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
183s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
183s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
183s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
185s Reading package lists...
185s Reading package lists...
185s Building dependency tree...
185s Reading state information...
185s Calculating upgrade...
185s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
186s Reading package lists...
186s Building dependency tree...
186s Reading state information...
186s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
186s autopkgtest [20:02:03]: rebooting testbed after setup commands that affected boot
328s autopkgtest [20:04:25]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024
331s autopkgtest [20:04:28]: @@@@@@@@@@@@@@@@@@@@ apt-source openbabel
337s Get:1 http://ftpmaster.internal/ubuntu noble/universe openbabel 3.1.1+dfsg-9ubuntu2 (dsc) [2903 B]
337s Get:2 http://ftpmaster.internal/ubuntu noble/universe openbabel 3.1.1+dfsg-9ubuntu2 (tar) [21.8 MB]
337s Get:3 http://ftpmaster.internal/ubuntu noble/universe openbabel 3.1.1+dfsg-9ubuntu2 (diff) [21.4 kB]
337s gpgv: Signature made Sat Jan 20 08:56:00 2024 UTC
337s gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
337s gpgv: Can't check signature: No public key
337s dpkg-source: warning: cannot verify inline signature for ./openbabel_3.1.1+dfsg-9ubuntu2.dsc: no acceptable signature found
343s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/src/CMakeLists.txt more than once
343s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/CMakeLists.txt more than once
343s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/OpenBabel3Config.cmake.in more than once
343s autopkgtest [20:04:40]: testing package openbabel version 3.1.1+dfsg-9ubuntu2
344s autopkgtest [20:04:41]: build not needed
372s autopkgtest [20:05:09]: test python3: preparing testbed
381s Reading package lists...
381s Building dependency tree...
381s Reading state information...
381s Starting pkgProblemResolver with broken count: 0
381s Starting 2 pkgProblemResolver with broken count: 0
381s Done
381s The following additional packages will be installed:
381s   adwaita-icon-theme at-spi2-common dconf-gsettings-backend dconf-service
381s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
381s   gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme
381s   libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0 libavahi-client3
381s   libavahi-common-data libavahi-common3 libboost-iostreams1.83.0
381s   libcairo-gobject2 libcairo2 libchemistry-openbabel-perl libcolord2 libcups2
381s   libdatrie1 libdconf1 libdeflate0 libepoxy0 libfontconfig1 libfreetype6
381s   libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgomp1 libgraphite2-3
381s   libgtk-3-0 libgtk-3-common libharfbuzz0b libice6 libinchi1 libjbig0
381s   libjpeg-turbo8 libjpeg8 libjs-jquery liblcms2-2 libmaeparser1 libnotify4
381s   libopenbabel-dev libopenbabel-doc libopenbabel7 libpango-1.0-0
381s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-32-0 libpixman-1-0
381s   libpython3.12 libsharpyuv0 libsm6 libthai-data libthai0 libtiff6
381s   libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7
381s   libwxbase3.2-1 libwxgtk3.2-1 libxcb-render0 libxcb-shm0 libxcomposite1
381s   libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2
381s   libxrender1 libxtst6 openbabel openbabel-gui python3-openbabel ubuntu-mono
381s   x11-common
381s Suggested packages:
381s   colord cups-common gvfs liblcms2-utils notification-daemon
381s Recommended packages:
381s   librsvg2-common at-spi2-core libgdk-pixbuf2.0-bin libgtk-3-bin
381s   javascript-common
381s The following NEW packages will be installed:
381s   adwaita-icon-theme at-spi2-common autopkgtest-satdep dconf-gsettings-backend
381s   dconf-service fontconfig fontconfig-config fonts-dejavu-core
381s   fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme
381s   humanity-icon-theme libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0
381s   libavahi-client3 libavahi-common-data libavahi-common3
381s   libboost-iostreams1.83.0 libcairo-gobject2 libcairo2
381s   libchemistry-openbabel-perl libcolord2 libcups2 libdatrie1 libdconf1
381s   libdeflate0 libepoxy0 libfontconfig1 libfreetype6 libgdk-pixbuf-2.0-0
381s   libgdk-pixbuf2.0-common libgomp1 libgraphite2-3 libgtk-3-0 libgtk-3-common
381s   libharfbuzz0b libice6 libinchi1 libjbig0 libjpeg-turbo8 libjpeg8
381s   libjs-jquery liblcms2-2 libmaeparser1 libnotify4 libopenbabel-dev
381s   libopenbabel-doc libopenbabel7 libpango-1.0-0 libpangocairo-1.0-0
381s   libpangoft2-1.0-0 libpcre2-32-0 libpixman-1-0 libpython3.12 libsharpyuv0
381s   libsm6 libthai-data libthai0 libtiff6 libwayland-client0 libwayland-cursor0
381s   libwayland-egl1 libwebp7 libwxbase3.2-1 libwxgtk3.2-1 libxcb-render0
381s   libxcb-shm0 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6
381s   libxinerama1 libxrandr2 libxrender1 libxtst6 openbabel openbabel-gui
381s   python3-openbabel ubuntu-mono x11-common
381s 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded.
381s Need to get 33.5 MB/33.5 MB of archives.
381s After this operation, 160 MB of additional disk space will be used.
381s Get:1 /tmp/autopkgtest.wnBrGE/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [748 B]
382s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B]
382s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB]
382s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
382s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB]
382s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB]
382s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB]
382s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB]
382s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB]
382s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libgdk-pixbuf-2.0-0 s390x 2.42.10+dfsg-3 [152 kB]
382s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x gtk-update-icon-cache s390x 3.24.40-2ubuntu1 [51.0 kB]
382s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x hicolor-icon-theme all 0.17-2 [9976 B]
382s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x humanity-icon-theme all 0.6.16 [1282 kB]
382s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-mono all 24.04-0ubuntu1 [151 kB]
382s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x adwaita-icon-theme all 46~rc-1 [723 kB]
382s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x at-spi2-common all 2.50.0-1 [7864 B]
382s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libdconf1 s390x 0.40.0-4 [38.9 kB]
382s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x dconf-service s390x 0.40.0-4 [27.0 kB]
382s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x dconf-gsettings-backend s390x 0.40.0-4 [21.6 kB]
382s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB]
382s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
382s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
382s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB]
382s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB]
382s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB]
382s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libatk1.0-0 s390x 2.50.0-1 [54.4 kB]
382s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB]
382s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libatspi2.0-0 s390x 2.50.0-1 [77.9 kB]
382s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libatk-bridge2.0-0 s390x 2.50.0-1 [65.3 kB]
382s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libavahi-common-data s390x 0.8-13ubuntu2 [29.5 kB]
382s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libavahi-common3 s390x 0.8-13ubuntu2 [23.8 kB]
382s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libavahi-client3 s390x 0.8-13ubuntu2 [26.7 kB]
382s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libboost-iostreams1.83.0 s390x 1.83.0-2ubuntu1 [340 kB]
382s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB]
382s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB]
382s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B]
382s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB]
382s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB]
382s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libcairo-gobject2 s390x 1.18.0-1 [126 kB]
382s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB]
382s Get:41 http://ftpmaster.internal/ubuntu noble/universe s390x libinchi1 s390x 1.03+dfsg-4 [452 kB]
382s Get:42 http://ftpmaster.internal/ubuntu noble/universe s390x libmaeparser1 s390x 1.3.1-1build1 [107 kB]
382s Get:43 http://ftpmaster.internal/ubuntu noble/universe s390x libopenbabel7 s390x 3.1.1+dfsg-9ubuntu2 [3394 kB]
383s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x libchemistry-openbabel-perl s390x 3.1.1+dfsg-9ubuntu2 [785 kB]
383s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB]
383s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libcolord2 s390x 1.4.7-1 [151 kB]
383s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libcups2 s390x 2.4.6-0ubuntu3 [277 kB]
383s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB]
383s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libepoxy0 s390x 1.5.10-1 [232 kB]
383s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB]
383s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB]
383s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB]
383s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB]
383s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB]
383s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB]
383s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB]
383s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-client0 s390x 1.22.0-2.1 [26.1 kB]
383s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-cursor0 s390x 1.22.0-2.1 [11.1 kB]
383s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-egl1 s390x 1.22.0-2.1 [5452 B]
383s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libxcomposite1 s390x 1:0.4.5-1build2 [6952 B]
383s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libxfixes3 s390x 1:6.0.0-2 [10.6 kB]
383s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libxcursor1 s390x 1:1.2.1-1 [22.2 kB]
383s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxdamage1 s390x 1:1.1.6-1 [5810 B]
383s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxinerama1 s390x 2:1.1.4-3 [7110 B]
383s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libxrandr2 s390x 2:1.5.2-2 [19.5 kB]
383s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libgtk-3-common all 3.24.40-2ubuntu1 [1200 kB]
383s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libgtk-3-0 s390x 3.24.40-2ubuntu1 [2952 kB]
383s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB]
383s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB]
383s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
383s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libnotify4 s390x 0.8.3-1 [25.0 kB]
383s Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x libopenbabel-dev s390x 3.1.1+dfsg-9ubuntu2 [181 kB]
383s Get:73 http://ftpmaster.internal/ubuntu noble/universe s390x libopenbabel-doc all 3.1.1+dfsg-9ubuntu2 [5613 kB]
383s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB]
383s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12 s390x 3.12.2-1 [2561 kB]
383s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB]
383s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x libwxbase3.2-1 s390x 3.2.4+dfsg-3 [925 kB]
383s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libxtst6 s390x 2:1.2.3-1.1 [13.4 kB]
383s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x libwxgtk3.2-1 s390x 3.2.4+dfsg-3 [4739 kB]
383s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x openbabel s390x 3.1.1+dfsg-9ubuntu2 [132 kB]
383s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x openbabel-gui s390x 3.1.1+dfsg-9ubuntu2 [88.7 kB]
383s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x python3-openbabel s390x 3.1.1+dfsg-9ubuntu2 [613 kB]
384s Fetched 33.5 MB in 2s (16.9 MB/s)
384s Selecting previously unselected package libgdk-pixbuf2.0-common.
384s (Reading database ... 
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(Reading database ... 51347 files and directories currently installed.)
384s Preparing to unpack .../00-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ...
384s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ...
384s Selecting previously unselected package libjpeg-turbo8:s390x.
384s Preparing to unpack .../01-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ...
384s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ...
384s Selecting previously unselected package libjpeg8:s390x.
384s Preparing to unpack .../02-libjpeg8_8c-2ubuntu11_s390x.deb ...
384s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
384s Selecting previously unselected package libdeflate0:s390x.
384s Preparing to unpack .../03-libdeflate0_1.19-1_s390x.deb ...
384s Unpacking libdeflate0:s390x (1.19-1) ...
384s Selecting previously unselected package libjbig0:s390x.
384s Preparing to unpack .../04-libjbig0_2.1-6.1ubuntu1_s390x.deb ...
384s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ...
384s Selecting previously unselected package libsharpyuv0:s390x.
384s Preparing to unpack .../05-libsharpyuv0_1.3.2-0.4_s390x.deb ...
384s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ...
384s Selecting previously unselected package libwebp7:s390x.
384s Preparing to unpack .../06-libwebp7_1.3.2-0.4_s390x.deb ...
384s Unpacking libwebp7:s390x (1.3.2-0.4) ...
384s Selecting previously unselected package libtiff6:s390x.
384s Preparing to unpack .../07-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ...
384s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ...
384s Selecting previously unselected package libgdk-pixbuf-2.0-0:s390x.
384s Preparing to unpack .../08-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_s390x.deb ...
384s Unpacking libgdk-pixbuf-2.0-0:s390x (2.42.10+dfsg-3) ...
384s Selecting previously unselected package gtk-update-icon-cache.
384s Preparing to unpack .../09-gtk-update-icon-cache_3.24.40-2ubuntu1_s390x.deb ...
384s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ...
384s Selecting previously unselected package hicolor-icon-theme.
384s Preparing to unpack .../10-hicolor-icon-theme_0.17-2_all.deb ...
384s Unpacking hicolor-icon-theme (0.17-2) ...
384s Selecting previously unselected package humanity-icon-theme.
384s Preparing to unpack .../11-humanity-icon-theme_0.6.16_all.deb ...
384s Unpacking humanity-icon-theme (0.6.16) ...
385s Selecting previously unselected package ubuntu-mono.
385s Preparing to unpack .../12-ubuntu-mono_24.04-0ubuntu1_all.deb ...
385s Unpacking ubuntu-mono (24.04-0ubuntu1) ...
385s Selecting previously unselected package adwaita-icon-theme.
385s Preparing to unpack .../13-adwaita-icon-theme_46~rc-1_all.deb ...
385s Unpacking adwaita-icon-theme (46~rc-1) ...
386s Selecting previously unselected package at-spi2-common.
386s Preparing to unpack .../14-at-spi2-common_2.50.0-1_all.deb ...
386s Unpacking at-spi2-common (2.50.0-1) ...
386s Selecting previously unselected package libdconf1:s390x.
386s Preparing to unpack .../15-libdconf1_0.40.0-4_s390x.deb ...
386s Unpacking libdconf1:s390x (0.40.0-4) ...
386s Selecting previously unselected package dconf-service.
386s Preparing to unpack .../16-dconf-service_0.40.0-4_s390x.deb ...
386s Unpacking dconf-service (0.40.0-4) ...
386s Selecting previously unselected package dconf-gsettings-backend:s390x.
386s Preparing to unpack .../17-dconf-gsettings-backend_0.40.0-4_s390x.deb ...
386s Unpacking dconf-gsettings-backend:s390x (0.40.0-4) ...
386s Selecting previously unselected package libfreetype6:s390x.
386s Preparing to unpack .../18-libfreetype6_2.13.2+dfsg-1_s390x.deb ...
386s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ...
386s Selecting previously unselected package fonts-dejavu-mono.
386s Preparing to unpack .../19-fonts-dejavu-mono_2.37-8_all.deb ...
386s Unpacking fonts-dejavu-mono (2.37-8) ...
386s Selecting previously unselected package fonts-dejavu-core.
386s Preparing to unpack .../20-fonts-dejavu-core_2.37-8_all.deb ...
386s Unpacking fonts-dejavu-core (2.37-8) ...
386s Selecting previously unselected package fontconfig-config.
386s Preparing to unpack .../21-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ...
386s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
386s Selecting previously unselected package libfontconfig1:s390x.
386s Preparing to unpack .../22-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ...
386s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ...
386s Selecting previously unselected package fontconfig.
386s Preparing to unpack .../23-fontconfig_2.15.0-1ubuntu1_s390x.deb ...
386s Unpacking fontconfig (2.15.0-1ubuntu1) ...
386s Selecting previously unselected package libatk1.0-0:s390x.
386s Preparing to unpack .../24-libatk1.0-0_2.50.0-1_s390x.deb ...
386s Unpacking libatk1.0-0:s390x (2.50.0-1) ...
386s Selecting previously unselected package libxi6:s390x.
386s Preparing to unpack .../25-libxi6_2%3a1.8.1-1_s390x.deb ...
386s Unpacking libxi6:s390x (2:1.8.1-1) ...
386s Selecting previously unselected package libatspi2.0-0:s390x.
386s Preparing to unpack .../26-libatspi2.0-0_2.50.0-1_s390x.deb ...
386s Unpacking libatspi2.0-0:s390x (2.50.0-1) ...
386s Selecting previously unselected package libatk-bridge2.0-0:s390x.
386s Preparing to unpack .../27-libatk-bridge2.0-0_2.50.0-1_s390x.deb ...
386s Unpacking libatk-bridge2.0-0:s390x (2.50.0-1) ...
386s Selecting previously unselected package libavahi-common-data:s390x.
386s Preparing to unpack .../28-libavahi-common-data_0.8-13ubuntu2_s390x.deb ...
386s Unpacking libavahi-common-data:s390x (0.8-13ubuntu2) ...
386s Selecting previously unselected package libavahi-common3:s390x.
386s Preparing to unpack .../29-libavahi-common3_0.8-13ubuntu2_s390x.deb ...
386s Unpacking libavahi-common3:s390x (0.8-13ubuntu2) ...
386s Selecting previously unselected package libavahi-client3:s390x.
386s Preparing to unpack .../30-libavahi-client3_0.8-13ubuntu2_s390x.deb ...
386s Unpacking libavahi-client3:s390x (0.8-13ubuntu2) ...
386s Selecting previously unselected package libboost-iostreams1.83.0:s390x.
386s Preparing to unpack .../31-libboost-iostreams1.83.0_1.83.0-2ubuntu1_s390x.deb ...
386s Unpacking libboost-iostreams1.83.0:s390x (1.83.0-2ubuntu1) ...
386s Selecting previously unselected package libpixman-1-0:s390x.
386s Preparing to unpack .../32-libpixman-1-0_0.42.2-1_s390x.deb ...
386s Unpacking libpixman-1-0:s390x (0.42.2-1) ...
386s Selecting previously unselected package libxcb-render0:s390x.
386s Preparing to unpack .../33-libxcb-render0_1.15-1_s390x.deb ...
386s Unpacking libxcb-render0:s390x (1.15-1) ...
386s Selecting previously unselected package libxcb-shm0:s390x.
386s Preparing to unpack .../34-libxcb-shm0_1.15-1_s390x.deb ...
386s Unpacking libxcb-shm0:s390x (1.15-1) ...
386s Selecting previously unselected package libxrender1:s390x.
386s Preparing to unpack .../35-libxrender1_1%3a0.9.10-1.1_s390x.deb ...
386s Unpacking libxrender1:s390x (1:0.9.10-1.1) ...
386s Selecting previously unselected package libcairo2:s390x.
386s Preparing to unpack .../36-libcairo2_1.18.0-1_s390x.deb ...
386s Unpacking libcairo2:s390x (1.18.0-1) ...
386s Selecting previously unselected package libcairo-gobject2:s390x.
386s Preparing to unpack .../37-libcairo-gobject2_1.18.0-1_s390x.deb ...
386s Unpacking libcairo-gobject2:s390x (1.18.0-1) ...
386s Selecting previously unselected package libgomp1:s390x.
386s Preparing to unpack .../38-libgomp1_14-20240303-1ubuntu1_s390x.deb ...
386s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ...
386s Selecting previously unselected package libinchi1.
386s Preparing to unpack .../39-libinchi1_1.03+dfsg-4_s390x.deb ...
386s Unpacking libinchi1 (1.03+dfsg-4) ...
386s Selecting previously unselected package libmaeparser1:s390x.
386s Preparing to unpack .../40-libmaeparser1_1.3.1-1build1_s390x.deb ...
386s Unpacking libmaeparser1:s390x (1.3.1-1build1) ...
386s Selecting previously unselected package libopenbabel7.
386s Preparing to unpack .../41-libopenbabel7_3.1.1+dfsg-9ubuntu2_s390x.deb ...
386s Unpacking libopenbabel7 (3.1.1+dfsg-9ubuntu2) ...
386s Selecting previously unselected package libchemistry-openbabel-perl.
386s Preparing to unpack .../42-libchemistry-openbabel-perl_3.1.1+dfsg-9ubuntu2_s390x.deb ...
386s Unpacking libchemistry-openbabel-perl (3.1.1+dfsg-9ubuntu2) ...
386s Selecting previously unselected package liblcms2-2:s390x.
386s Preparing to unpack .../43-liblcms2-2_2.14-2_s390x.deb ...
386s Unpacking liblcms2-2:s390x (2.14-2) ...
386s Selecting previously unselected package libcolord2:s390x.
386s Preparing to unpack .../44-libcolord2_1.4.7-1_s390x.deb ...
386s Unpacking libcolord2:s390x (1.4.7-1) ...
387s Selecting previously unselected package libcups2:s390x.
387s Preparing to unpack .../45-libcups2_2.4.6-0ubuntu3_s390x.deb ...
387s Unpacking libcups2:s390x (2.4.6-0ubuntu3) ...
387s Selecting previously unselected package libdatrie1:s390x.
387s Preparing to unpack .../46-libdatrie1_0.2.13-3_s390x.deb ...
387s Unpacking libdatrie1:s390x (0.2.13-3) ...
387s Selecting previously unselected package libepoxy0:s390x.
387s Preparing to unpack .../47-libepoxy0_1.5.10-1_s390x.deb ...
387s Unpacking libepoxy0:s390x (1.5.10-1) ...
387s Selecting previously unselected package libgraphite2-3:s390x.
387s Preparing to unpack .../48-libgraphite2-3_1.3.14-2_s390x.deb ...
387s Unpacking libgraphite2-3:s390x (1.3.14-2) ...
387s Selecting previously unselected package libharfbuzz0b:s390x.
387s Preparing to unpack .../49-libharfbuzz0b_8.3.0-2_s390x.deb ...
387s Unpacking libharfbuzz0b:s390x (8.3.0-2) ...
387s Selecting previously unselected package libthai-data.
387s Preparing to unpack .../50-libthai-data_0.1.29-2_all.deb ...
387s Unpacking libthai-data (0.1.29-2) ...
387s Selecting previously unselected package libthai0:s390x.
387s Preparing to unpack .../51-libthai0_0.1.29-2_s390x.deb ...
387s Unpacking libthai0:s390x (0.1.29-2) ...
387s Selecting previously unselected package libpango-1.0-0:s390x.
387s Preparing to unpack .../52-libpango-1.0-0_1.51.0+ds-4_s390x.deb ...
387s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ...
387s Selecting previously unselected package libpangoft2-1.0-0:s390x.
387s Preparing to unpack .../53-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ...
387s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ...
387s Selecting previously unselected package libpangocairo-1.0-0:s390x.
387s Preparing to unpack .../54-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ...
387s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ...
387s Selecting previously unselected package libwayland-client0:s390x.
387s Preparing to unpack .../55-libwayland-client0_1.22.0-2.1_s390x.deb ...
387s Unpacking libwayland-client0:s390x (1.22.0-2.1) ...
387s Selecting previously unselected package libwayland-cursor0:s390x.
387s Preparing to unpack .../56-libwayland-cursor0_1.22.0-2.1_s390x.deb ...
387s Unpacking libwayland-cursor0:s390x (1.22.0-2.1) ...
387s Selecting previously unselected package libwayland-egl1:s390x.
387s Preparing to unpack .../57-libwayland-egl1_1.22.0-2.1_s390x.deb ...
387s Unpacking libwayland-egl1:s390x (1.22.0-2.1) ...
387s Selecting previously unselected package libxcomposite1:s390x.
387s Preparing to unpack .../58-libxcomposite1_1%3a0.4.5-1build2_s390x.deb ...
387s Unpacking libxcomposite1:s390x (1:0.4.5-1build2) ...
387s Selecting previously unselected package libxfixes3:s390x.
387s Preparing to unpack .../59-libxfixes3_1%3a6.0.0-2_s390x.deb ...
387s Unpacking libxfixes3:s390x (1:6.0.0-2) ...
387s Selecting previously unselected package libxcursor1:s390x.
387s Preparing to unpack .../60-libxcursor1_1%3a1.2.1-1_s390x.deb ...
387s Unpacking libxcursor1:s390x (1:1.2.1-1) ...
387s Selecting previously unselected package libxdamage1:s390x.
387s Preparing to unpack .../61-libxdamage1_1%3a1.1.6-1_s390x.deb ...
387s Unpacking libxdamage1:s390x (1:1.1.6-1) ...
387s Selecting previously unselected package libxinerama1:s390x.
387s Preparing to unpack .../62-libxinerama1_2%3a1.1.4-3_s390x.deb ...
387s Unpacking libxinerama1:s390x (2:1.1.4-3) ...
387s Selecting previously unselected package libxrandr2:s390x.
387s Preparing to unpack .../63-libxrandr2_2%3a1.5.2-2_s390x.deb ...
387s Unpacking libxrandr2:s390x (2:1.5.2-2) ...
387s Selecting previously unselected package libgtk-3-common.
387s Preparing to unpack .../64-libgtk-3-common_3.24.40-2ubuntu1_all.deb ...
387s Unpacking libgtk-3-common (3.24.40-2ubuntu1) ...
387s Selecting previously unselected package libgtk-3-0:s390x.
387s Preparing to unpack .../65-libgtk-3-0_3.24.40-2ubuntu1_s390x.deb ...
387s Unpacking libgtk-3-0:s390x (3.24.40-2ubuntu1) ...
387s Selecting previously unselected package x11-common.
387s Preparing to unpack .../66-x11-common_1%3a7.7+23ubuntu2_all.deb ...
387s Unpacking x11-common (1:7.7+23ubuntu2) ...
387s Selecting previously unselected package libice6:s390x.
387s Preparing to unpack .../67-libice6_2%3a1.0.10-1build2_s390x.deb ...
387s Unpacking libice6:s390x (2:1.0.10-1build2) ...
387s Selecting previously unselected package libjs-jquery.
387s Preparing to unpack .../68-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
387s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
387s Selecting previously unselected package libnotify4:s390x.
387s Preparing to unpack .../69-libnotify4_0.8.3-1_s390x.deb ...
387s Unpacking libnotify4:s390x (0.8.3-1) ...
387s Selecting previously unselected package libopenbabel-dev.
387s Preparing to unpack .../70-libopenbabel-dev_3.1.1+dfsg-9ubuntu2_s390x.deb ...
387s Unpacking libopenbabel-dev (3.1.1+dfsg-9ubuntu2) ...
387s Selecting previously unselected package libopenbabel-doc.
387s Preparing to unpack .../71-libopenbabel-doc_3.1.1+dfsg-9ubuntu2_all.deb ...
387s Unpacking libopenbabel-doc (3.1.1+dfsg-9ubuntu2) ...
388s Selecting previously unselected package libpcre2-32-0:s390x.
388s Preparing to unpack .../72-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ...
388s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ...
388s Selecting previously unselected package libpython3.12:s390x.
388s Preparing to unpack .../73-libpython3.12_3.12.2-1_s390x.deb ...
388s Unpacking libpython3.12:s390x (3.12.2-1) ...
388s Selecting previously unselected package libsm6:s390x.
388s Preparing to unpack .../74-libsm6_2%3a1.2.3-1build2_s390x.deb ...
388s Unpacking libsm6:s390x (2:1.2.3-1build2) ...
388s Selecting previously unselected package libwxbase3.2-1:s390x.
388s Preparing to unpack .../75-libwxbase3.2-1_3.2.4+dfsg-3_s390x.deb ...
388s Unpacking libwxbase3.2-1:s390x (3.2.4+dfsg-3) ...
388s Selecting previously unselected package libxtst6:s390x.
388s Preparing to unpack .../76-libxtst6_2%3a1.2.3-1.1_s390x.deb ...
388s Unpacking libxtst6:s390x (2:1.2.3-1.1) ...
388s Selecting previously unselected package libwxgtk3.2-1:s390x.
388s Preparing to unpack .../77-libwxgtk3.2-1_3.2.4+dfsg-3_s390x.deb ...
388s Unpacking libwxgtk3.2-1:s390x (3.2.4+dfsg-3) ...
388s Selecting previously unselected package openbabel.
388s Preparing to unpack .../78-openbabel_3.1.1+dfsg-9ubuntu2_s390x.deb ...
388s Unpacking openbabel (3.1.1+dfsg-9ubuntu2) ...
388s Selecting previously unselected package openbabel-gui.
388s Preparing to unpack .../79-openbabel-gui_3.1.1+dfsg-9ubuntu2_s390x.deb ...
388s Unpacking openbabel-gui (3.1.1+dfsg-9ubuntu2) ...
388s Selecting previously unselected package python3-openbabel.
388s Preparing to unpack .../80-python3-openbabel_3.1.1+dfsg-9ubuntu2_s390x.deb ...
388s Unpacking python3-openbabel (3.1.1+dfsg-9ubuntu2) ...
388s Selecting previously unselected package autopkgtest-satdep.
388s Preparing to unpack .../81-1-autopkgtest-satdep.deb ...
388s Unpacking autopkgtest-satdep (0) ...
388s Setting up libgraphite2-3:s390x (1.3.14-2) ...
388s Setting up liblcms2-2:s390x (2.14-2) ...
388s Setting up libpixman-1-0:s390x (0.42.2-1) ...
388s Setting up libsharpyuv0:s390x (1.3.2-0.4) ...
388s Setting up libxdamage1:s390x (1:1.1.6-1) ...
388s Setting up hicolor-icon-theme (0.17-2) ...
388s Setting up libxi6:s390x (2:1.8.1-1) ...
388s Setting up libxrender1:s390x (1:0.9.10-1.1) ...
388s Setting up libdatrie1:s390x (0.2.13-3) ...
388s Setting up libxcb-render0:s390x (1.15-1) ...
388s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ...
388s Setting up x11-common (1:7.7+23ubuntu2) ...
389s Setting up libdeflate0:s390x (1.19-1) ...
389s Setting up libxcb-shm0:s390x (1.15-1) ...
389s Setting up libatspi2.0-0:s390x (2.50.0-1) ...
389s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ...
389s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ...
389s Setting up libcolord2:s390x (1.4.7-1) ...
389s Setting up libdconf1:s390x (0.40.0-4) ...
389s Setting up libpcre2-32-0:s390x (10.42-4ubuntu1) ...
389s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ...
389s Setting up libepoxy0:s390x (1.5.10-1) ...
389s Setting up libxfixes3:s390x (1:6.0.0-2) ...
389s Setting up libboost-iostreams1.83.0:s390x (1.83.0-2ubuntu1) ...
389s Setting up libavahi-common-data:s390x (0.8-13ubuntu2) ...
389s Setting up libxinerama1:s390x (2:1.1.4-3) ...
389s Setting up fonts-dejavu-mono (2.37-8) ...
389s Setting up libxrandr2:s390x (2:1.5.2-2) ...
389s Setting up fonts-dejavu-core (2.37-8) ...
389s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ...
389s Setting up libwebp7:s390x (1.3.2-0.4) ...
389s Setting up at-spi2-common (2.50.0-1) ...
389s Setting up libharfbuzz0b:s390x (8.3.0-2) ...
389s Setting up libthai-data (0.1.29-2) ...
389s Setting up libatk1.0-0:s390x (2.50.0-1) ...
389s Setting up libwayland-egl1:s390x (1.22.0-2.1) ...
389s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
389s Setting up libxcomposite1:s390x (1:0.4.5-1build2) ...
389s Setting up libpython3.12:s390x (3.12.2-1) ...
389s Setting up libinchi1 (1.03+dfsg-4) ...
389s Setting up libwayland-client0:s390x (1.22.0-2.1) ...
389s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
389s Setting up libice6:s390x (2:1.0.10-1build2) ...
389s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
389s Setting up libxtst6:s390x (2:1.2.3-1.1) ...
389s Setting up libxcursor1:s390x (1:1.2.1-1) ...
389s Setting up libavahi-common3:s390x (0.8-13ubuntu2) ...
389s Setting up dconf-service (0.40.0-4) ...
389s Setting up libopenbabel-doc (3.1.1+dfsg-9ubuntu2) ...
389s Setting up libwxbase3.2-1:s390x (3.2.4+dfsg-3) ...
389s Setting up libmaeparser1:s390x (1.3.1-1build1) ...
389s Setting up libatk-bridge2.0-0:s390x (2.50.0-1) ...
389s Setting up libthai0:s390x (0.1.29-2) ...
389s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ...
389s Setting up libwayland-cursor0:s390x (1.22.0-2.1) ...
389s Setting up libgdk-pixbuf-2.0-0:s390x (2.42.10+dfsg-3) ...
389s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ...
389s Setting up libsm6:s390x (2:1.2.3-1build2) ...
389s Setting up libavahi-client3:s390x (0.8-13ubuntu2) ...
389s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ...
389s Setting up fontconfig (2.15.0-1ubuntu1) ...
391s Regenerating fonts cache... done.
391s Setting up dconf-gsettings-backend:s390x (0.40.0-4) ...
391s Setting up libpango-1.0-0:s390x (1.51.0+ds-4) ...
391s Setting up libcairo2:s390x (1.18.0-1) ...
391s Setting up libnotify4:s390x (0.8.3-1) ...
391s Setting up libcups2:s390x (2.4.6-0ubuntu3) ...
391s Setting up libcairo-gobject2:s390x (1.18.0-1) ...
391s Setting up libpangoft2-1.0-0:s390x (1.51.0+ds-4) ...
391s Setting up libgtk-3-common (3.24.40-2ubuntu1) ...
391s Setting up libpangocairo-1.0-0:s390x (1.51.0+ds-4) ...
391s Setting up libopenbabel7 (3.1.1+dfsg-9ubuntu2) ...
391s Setting up libopenbabel-dev (3.1.1+dfsg-9ubuntu2) ...
391s Setting up libchemistry-openbabel-perl (3.1.1+dfsg-9ubuntu2) ...
391s Setting up python3-openbabel (3.1.1+dfsg-9ubuntu2) ...
391s Setting up openbabel (3.1.1+dfsg-9ubuntu2) ...
391s Setting up adwaita-icon-theme (46~rc-1) ...
391s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
391s Setting up humanity-icon-theme (0.6.16) ...
391s Setting up ubuntu-mono (24.04-0ubuntu1) ...
391s Processing triggers for man-db (2.12.0-3) ...
392s Processing triggers for libglib2.0-0t64:s390x (2.79.3-3ubuntu5) ...
392s Setting up libgtk-3-0:s390x (3.24.40-2ubuntu1) ...
392s Processing triggers for libc-bin (2.39-0ubuntu6) ...
392s Setting up libwxgtk3.2-1:s390x (3.2.4+dfsg-3) ...
392s Setting up openbabel-gui (3.1.1+dfsg-9ubuntu2) ...
392s Setting up autopkgtest-satdep (0) ...
392s Processing triggers for libc-bin (2.39-0ubuntu6) ...
398s (Reading database ... 66423 files and directories currently installed.)
398s Removing autopkgtest-satdep (0) ...
399s autopkgtest [20:05:36]: test python3: [-----------------------
399s Running test/testRInChI.py ...
399s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testRInChI.py:1: SyntaxWarning: invalid escape sequence '\P'
399s   """Test OpenBabel executables from Python
399s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testbabel.py:1: SyntaxWarning: invalid escape sequence '\P'
399s   """Test OpenBabel executables from Python
399s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d'
399s   pat = "(-?\d.*) molecule(?:s?) converted"
400s ..
400s ----------------------------------------------------------------------
400s Ran 2 tests in 0.955s
400s 
400s OK
400s Running test/test_pybel.py ...
400s /tmp/autopkgtest.wnBrGE/build.XES/src/test/test_pybel.py:1: SyntaxWarning: invalid escape sequence '\P'
400s   """Test OpenBabel Python bindings
400s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testbindings.py:1: SyntaxWarning: invalid escape sequence '\P'
400s   """Test OpenBabel Python bindings
400s .........................==============================
400s *** Open Babel Warning  in WriteMolecule
400s   No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D.
400s .....==============================
400s *** Open Babel Error  in SMARTSError
400s   SMARTS Error:
400s [#NOEL][#NOEL]
400s   ^
400s 
401s ....
401s ----------------------------------------------------------------------
401s Ran 34 tests in 0.350s
401s 
401s OK
401s Running test/testbabel.py ...
401s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testbabel.py:1: SyntaxWarning: invalid escape sequence '\P'
401s   """Test OpenBabel executables from Python
401s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d'
401s   pat = "(-?\d.*) molecule(?:s?) converted"
402s ......./usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
402s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
402s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
402s   self.stdout = io.open(c2pread, 'rb', bufsize)
402s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
402s   self.stderr = io.open(errread, 'rb', bufsize)
404s ......
404s ----------------------------------------------------------------------
404s Ran 13 tests in 3.420s
404s 
404s OK
404s Running test/testbindings.py ...
404s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testbindings.py:1: SyntaxWarning: invalid escape sequence '\P'
404s   """Test OpenBabel Python bindings
404s ...==============================
404s *** Open Babel Warning  in WriteMolecule
404s   No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D.
404s ....==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Too many greater-than signs in SMILES string
404s 
404s ==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Too many greater-than signs in SMILES string
404s 
404s ==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Too many greater-than signs in SMILES string
404s 
404s ==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Invalid reaction SMILES string: only a single '>' sign found (two required to be valid).
404s ==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Invalid reaction SMILES string: only a single '>' sign found (two required to be valid).
404s ==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Invalid reaction SMILES string: only a single '>' sign found (two required to be valid).
404s ..==============================
404s *** Open Babel Warning  in IsValid
404s   The molecule is not marked as a reaction. Use SetIsReaction().
404s ==============================
404s *** Open Babel Warning  in IsValid
404s   Reaction roles should be in the range 0 to 3 inclusive.
404s ==============================
404s *** Open Babel Warning  in IsValid
404s   Reaction component Ids should all be non-zero positive integers.
404s ==============================
404s *** Open Babel Warning  in IsValid
404s   The molecule contains an atom that is missing a reaction component Id. Use SetComponentId().
404s ==============================
404s *** Open Babel Warning  in IsValid
404s   A reaction component Id has been stored using a data type that is not an OBPairInteger.
404s ==============================
404s *** Open Babel Warning  in IsValid
404s   The molecule contains a connected component that contains atoms with different reaction component Ids. All atoms in a particular connected component should have the same value.
404s ==============================
404s *** Open Babel Warning  in IsValid
404s   The molecule contains a connected component that contains atoms with different reaction roles. All atoms in a particular connected component should have the same role.
404s ...........==============================
404s *** Open Babel Warning  in ReadMolecule
404s   WARNING: Problem interpreting the valence field of an atom
404s The valence field specifies a valence 0 that is
404s less than the observed explicit valence 1.
404s 
404s .==============================
404s *** Open Babel Warning  in WriteMolecule
404s   No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D.
404s ..........==============================
404s *** Open Babel Error  in ParseComplex
404s   SMILES string contains a character '#' which is invalid
404s ==============================
404s *** Open Babel Error  in ParseComplex
404s   Element number must be <= 255)
404s ==============================
404s *** Open Babel Error  in ParseComplex
404s   SMILES string contains a character '#' which is invalid
404s ..==============================
404s *** Open Babel Warning  in ParseRingBond
404s   Warning: Tetrahedral stereo specified for atom with more than 4 connections.
404s ==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Failed to kekulize aromatic SMILES
404s 
433s ...terminate called after throwing an instance of 'std::bad_alloc'
433s   what():  std::bad_alloc
435s Ignoring test/testbindings.py on s390x ...
435s /tmp/autopkgtest.wnBrGE/build.XES/src/debian/tests/python3: line 9:  2831 Aborted                 (core dumped) python3 ${TEST}
435s Running test/testcdjsonformat.py ...
435s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testcdjsonformat.py:1: SyntaxWarning: invalid escape sequence '\P'
435s   """Test ChemDoodle JSON format using the OpenBabel Python bindings
435s ..........Running test/testdistgeom.py ...
435s 
435s ----------------------------------------------------------------------
435s Ran 10 tests in 0.004s
435s 
435s OK
435s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testdistgeom.py:1: SyntaxWarning: invalid escape sequence '\P'
435s   """Test OpenBabel executables from Python
435s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
435s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
435s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
435s   self.stdout = io.open(c2pread, 'rb', bufsize)
435s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
435s   self.stderr = io.open(errread, 'rb', bufsize)
596s .
596s ----------------------------------------------------------------------
596s Ran 1 test in 161.244s
596s 
596s OK
596s Running test/testexample.py ...
596s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testexample.py:1: SyntaxWarning: invalid escape sequence '\P'
596s   """Example test that uses the OpenBabel Python bindings
596s ..
596s ----------------------------------------------------------------------
596s Ran 2 tests in 0.001s
596s 
596s OK
596s Running test/testfastsearch.py ...
596s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testfastsearch.py:1: SyntaxWarning: invalid escape sequence '\P'
596s   """Test OpenBabel executables from Python
596s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testfastsearch.py:30: SyntaxWarning: invalid escape sequence '\C'
596s   smiles = """C12(C(N(C(=O)C)c3c2cccc3)=O)Nc2c(ccc(c2N1)OCCCC)OCCCC
596s .
596s ----------------------------------------------------------------------
596s Ran 1 test in 0.060s
596s 
596s OK
596s Running test/testkekule.py ...
596s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testkekule.py:1: SyntaxWarning: invalid escape sequence '\P'
596s   """Test OpenBabel executables from Python
596s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
596s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
596s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
596s   self.stdout = io.open(c2pread, 'rb', bufsize)
596s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
596s   self.stderr = io.open(errread, 'rb', bufsize)
597s ...
597s ----------------------------------------------------------------------
597s Ran 3 tests in 0.439s
597s 
597s OK
597s Running test/testobconv_writers.py ...
597s ........................F.................................................................F..................................................
597s ======================================================================
597s FAIL: test_default (__main__.TestCSR.test_default)
597s ----------------------------------------------------------------------
597s Traceback (most recent call last):
597s   File "/tmp/autopkgtest.wnBrGE/build.XES/src/test/testobconv_writers.py", line 1230, in test_default
597s     self.assertBinaryWriters(self.fmt, b'\x04\x00\x00\x00V33 \x04\x00\x00\x00\x08\x00\x00\x00\x07\x00\x00\x00\x01\x00\x00\x00\x08\x00\x00\x00d\x00\x00\x00phenol                                                                                             \x00d\x00\x00\x00\x04\x00\x00\x00\x07\x00\x00\x00\x04\x00\x00\x00\\\x00\x00\x00\x01\x00\x00\x00\x05\x17+j0\xad\x04\xc0phenol:1                                                                       \x00\\\x00\x00\x008\x00\x00\x00\x98\xdd\x93\x87\x85Z\xf9?r\x8a\x8e\xe4\xf2\x1f\xf9?V\x0e-\xb2\x9do\x03@?W[\xb1\xbfl\n@\n\xd7\xa3p=\x8a\n@\x00\x00\x00\x00\x00\x00\x00\x005^\xbaI\x0c\x02\xf0\xbf8\x00\x00\x008\x00\x00\x00V}\xae\xb6b\x7f\x99\xbf\x9e\xef\xa7\xc6K7\xef?\xe4\x83\x9e\xcd\xaa\xcf\xf7?\xc4\xb1.n\xa3\x01\xf0?\x00\x00\x00\x00\x00\x00\x00\x80\x00\x00\x00\x00\x00\x00\x00\x00\x88\x85Z\xd3\xbc\xe3t?8\x00\x00\x008\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x008\x00\x00\x00')
597s   File "/tmp/autopkgtest.wnBrGE/build.XES/src/test/testobconv_writers.py", line 283, in assertBinaryWriters
597s     test_binary_write_string(self, mol, conv, expected_output, normalize)
597s   File "/tmp/autopkgtest.wnBrGE/build.XES/src/test/testobconv_writers.py", line 176, in test_binary_write_string
597s     test_case.assertEqual(output, expected_output)
597s AssertionError: b'\x00\x00\x00\x04V33 \x00\x00\x00\x04\x00\x00[1027 chars]x008' != b'\x04\x00\x00\x00V33 \x04\x00\x00\x00\x08\x00[1027 chars]\x00'
597s 
597s ======================================================================
597s FAIL: test_default (__main__.TestPCJSON.test_default)
597s ----------------------------------------------------------------------
597s Traceback (most recent call last):
597s   File "/tmp/autopkgtest.wnBrGE/build.XES/src/test/testobconv_writers.py", line 2761, in test_default
597s     self.assertWriters(self.fmt, """\
597s   File "/tmp/autopkgtest.wnBrGE/build.XES/src/test/testobconv_writers.py", line 258, in assertWriters
597s     test_write_string(self, mol, conv, expected_output, normalize)
597s   File "/tmp/autopkgtest.wnBrGE/build.XES/src/test/testobconv_writers.py", line 165, in test_write_string
597s     test_case.assertMultiLineEqual(output.replace("\r\n", "\n"), expected_output.replace("\r\n", "\n"))
597s AssertionError: '{\n [1926 chars]102014\n              ],\n              "y": [[1070 chars]]\n}' != '{\n [1926 chars]102012\n              ],\n              "y": [[1070 chars]]\n}'
597s   {
597s     "PC_Compounds": [
597s       {
597s         "atoms": {
597s           "aids": [
597s             1,
597s             2,
597s             3,
597s             4,
597s             5,
597s             6,
597s             7,
597s             8,
597s             9,
597s             10,
597s             11,
597s             12,
597s             13
597s           ],
597s           "element": [
597s             6,
597s             6,
597s             6,
597s             6,
597s             6,
597s             6,
597s             8,
597s             1,
597s             1,
597s             1,
597s             1,
597s             1,
597s             1
597s           ]
597s         },
597s         "bonds": {
597s           "aid1": [
597s             1,
597s             1,
597s             2,
597s             3,
597s             4,
597s             5,
597s             6,
597s             1,
597s             2,
597s             3,
597s             4,
597s             5,
597s             7
597s           ],
597s           "aid2": [
597s             6,
597s             2,
597s             3,
597s             4,
597s             5,
597s             6,
597s             7,
597s             8,
597s             9,
597s             10,
597s             11,
597s             12,
597s             13
597s           ],
597s           "order": [
597s             2,
597s             1,
597s             2,
597s             1,
597s             2,
597s             1,
597s             1,
597s             1,
597s             1,
597s             1,
597s             1,
597s             1,
597s             1
597s           ]
597s         },
597s         "coords": [
597s           {
597s             "type": [
597s               1
597s             ],
597s             "aids": [
597s               1,
597s               2,
597s               3,
597s               4,
597s               5,
597s               6,
597s               7,
597s               8,
597s               9,
597s               10,
597s               11,
597s               12,
597s               13
597s             ],
597s             "conformers": [
597s               {
597s                 "x": [
597s                   1.5846,
597s                   1.5703,
597s                   2.4295,
597s                   3.3031,
597s                   3.3175,
597s                   0.0,
597s                   -1.0005,
597s                   2.313816216007316,
597s                   0.669250157347277,
597s                   2.4146659588503769,
597s                   4.189331679349326,
597s                   4.052466878708012,
597s -                 -1.4648575597102014
597s ?                                   ^
597s +                 -1.4648575597102012
597s ?                                   ^
597s                 ],
597s                 "y": [
597s                   1.5846,
597s                   1.5703,
597s                   2.4295,
597s                   3.3031,
597s                   3.3175,
597s                   0.0,
597s                   -1.0005,
597s                   2.313816216007316,
597s                   0.669250157347277,
597s                   2.4146659588503769,
597s                   4.189331679349326,
597s                   4.052466878708012,
597s -                 -1.4648575597102014
597s ?                                   ^
597s +                 -1.4648575597102012
597s ?                                   ^
597s                 ],
597s                 "style": {
597s                   "annotation": [
597s                     8,
597s                     8,
597s                     8,
597s                     8,
597s                     8,
597s                     8
597s                   ],
597s                   "aid1": [
597s                     1,
597s                     1,
597s                     2,
597s                     3,
597s                     4,
597s                     5
597s                   ],
597s                   "aid2": [
597s                     6,
597s                     2,
597s                     3,
597s                     4,
597s                     5,
597s                     6
597s                   ]
597s                 }
597s               }
597s             ]
597s           }
597s         ],
597s         "charge": 0
597s       }
597s     ]
597s   }
597s 
597s 
597s ----------------------------------------------------------------------
597s Ran 141 tests in 0.135s
597s 
597s FAILED (failures=2)
597s Ignoring test/testobconv_writers.py on s390x ...
597s Running test/testpcjsonformat.py ...
597s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testpcjsonformat.py:1: SyntaxWarning: invalid escape sequence '\P'
597s   """Test PubChem JSON format using the OpenBabel Python bindings
597s .................
597s ----------------------------------------------------------------------
597s Ran 17 tests in 0.017s
597s 
597s OK
597s Running test/testpdbformat.py ...
597s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testpdbformat.py:1: SyntaxWarning: invalid escape sequence '\P'
597s   """Test OpenBabel executables from Python
597s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
597s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
597s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
597s   self.stdout = io.open(c2pread, 'rb', bufsize)
597s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
597s   self.stderr = io.open(errread, 'rb', bufsize)
597s .
597s ----------------------------------------------------------------------
597s Ran 1 test in 0.022s
597s 
597s OK
597s Skipping test/testroundtrip.py ...
597s Running test/testsmartssym.py ...
597s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testsmartssym.py:1: SyntaxWarning: invalid escape sequence '\P'
597s   """Test OpenBabel executables from Python
597s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
597s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
597s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
597s   self.stdout = io.open(c2pread, 'rb', bufsize)
597s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
597s   self.stderr = io.open(errread, 'rb', bufsize)
598s ....
598s ----------------------------------------------------------------------
598s Ran 4 tests in 0.917s
598s 
598s OK
598s Skipping test/testsym.py ...
598s Running test/testunique.py ...
598s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testunique.py:1: SyntaxWarning: invalid escape sequence '\P'
598s   """Test OpenBabel executables from Python
598s /tmp/autopkgtest.wnBrGE/build.XES/src/test/testunique.py:26: SyntaxWarning: invalid escape sequence '\F'
598s   self.smiles = """C	methane
598s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
598s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
598s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
598s   self.stdout = io.open(c2pread, 'rb', bufsize)
598s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
598s   self.stderr = io.open(errread, 'rb', bufsize)
599s .
599s ----------------------------------------------------------------------
599s Ran 1 test in 0.196s
599s 
599s OK
599s autopkgtest [20:08:56]: test python3: -----------------------]
599s autopkgtest [20:08:56]: test python3:  - - - - - - - - - - results - - - - - - - - - -
599s python3              PASS
600s autopkgtest [20:08:57]: @@@@@@@@@@@@@@@@@@@@ summary
600s python3              PASS
616s Creating nova instance adt-noble-s390x-openbabel-20240323-195857-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240321.img (UUID a4b1c77c-a35e-4d28-a8d9-902a1febb465)...