0s autopkgtest [09:28:16]: starting date and time: 2024-03-23 09:28:16+0000 0s autopkgtest [09:28:16]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [09:28:16]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5l3c7yez/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade nanosv --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-14.secgroup --name adt-noble-s390x-nanosv-20240323-092816-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 91s autopkgtest [09:29:47]: testbed dpkg architecture: s390x 91s autopkgtest [09:29:47]: testbed apt version: 2.7.12 91s autopkgtest [09:29:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 92s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 93s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 93s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 93s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 93s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3972 kB] 93s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [651 kB] 93s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 93s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 93s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 93s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4148 kB] 94s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 94s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB] 94s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 96s Fetched 9504 kB in 3s (3447 kB/s) 96s Reading package lists... 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Calculating upgrade... 99s The following packages will be REMOVED: 99s libssl3 99s The following NEW packages will be installed: 99s libssl3t64 99s The following packages have been kept back: 99s curl 99s The following packages will be upgraded: 99s libbsd0 libc-bin libc6 locales openssl 99s 5 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 99s Need to get 10.5 MB of archives. 99s After this operation, 241 kB of additional disk space will be used. 99s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libc6 s390x 2.39-0ubuntu6 [2847 kB] 101s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc-bin s390x 2.39-0ubuntu6 [654 kB] 101s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB] 101s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB] 101s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1 [46.7 kB] 101s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x locales all 2.39-0ubuntu6 [4232 kB] 102s Preconfiguring packages ... 102s Fetched 10.5 MB in 3s (3974 kB/s) 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 102s Preparing to unpack .../libc6_2.39-0ubuntu6_s390x.deb ... 102s Unpacking libc6:s390x (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 103s Setting up libc6:s390x (2.39-0ubuntu6) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 103s Preparing to unpack .../libc-bin_2.39-0ubuntu6_s390x.deb ... 103s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 103s Setting up libc-bin (2.39-0ubuntu6) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 103s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ... 103s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 103s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 103s wget depends on libssl3 (>= 3.0.0). 103s tnftp depends on libssl3 (>= 3.0.0). 103s tcpdump depends on libssl3 (>= 3.0.0). 103s systemd-resolved depends on libssl3 (>= 3.0.0). 103s systemd depends on libssl3 (>= 3.0.0). 103s sudo depends on libssl3 (>= 3.0.0). 103s s390-tools depends on libssl3 (>= 3.0.0). 103s rsync depends on libssl3 (>= 3.0.0). 103s python3-cryptography depends on libssl3 (>= 3.0.0). 103s openssh-server depends on libssl3 (>= 3.0.10). 103s openssh-client depends on libssl3 (>= 3.0.10). 103s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 103s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 103s libssh-4:s390x depends on libssl3 (>= 3.0.0). 103s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 103s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 103s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 103s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 103s libnvme1 depends on libssl3 (>= 3.0.0). 103s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 103s libkmod2:s390x depends on libssl3 (>= 3.0.0). 103s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 103s libcurl4:s390x depends on libssl3 (>= 3.0.0). 103s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 103s kmod depends on libssl3 (>= 3.0.0). 103s dhcpcd-base depends on libssl3 (>= 3.0.0). 103s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 103s 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 103s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 103s Selecting previously unselected package libssl3t64:s390x. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52159 files and directories currently installed.) 103s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ... 103s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ... 103s Preparing to unpack .../libbsd0_0.12.1-1_s390x.deb ... 103s Unpacking libbsd0:s390x (0.12.1-1) over (0.11.8-1) ... 103s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 103s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 104s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ... 104s Setting up locales (2.39-0ubuntu6) ... 104s Generating locales (this might take a while)... 106s en_US.UTF-8... done 106s Generation complete. 106s Setting up openssl (3.0.13-0ubuntu2) ... 106s Setting up libbsd0:s390x (0.12.1-1) ... 106s Processing triggers for man-db (2.12.0-3) ... 106s Processing triggers for libc-bin (2.39-0ubuntu6) ... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 108s Unknown architecture, assuming PC-style ttyS0 108s sh: Attempting to set up Debian/Ubuntu apt sources automatically 108s sh: Distribution appears to be Ubuntu 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s eatmydata is already the newest version (131-1). 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s dbus is already the newest version (1.14.10-4ubuntu1). 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s rng-tools-debian is already the newest version (2.4). 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s The following packages will be REMOVED: 110s cloud-init* python3-configobj* python3-debconf* 110s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 110s After this operation, 3256 kB disk space will be freed. 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52172 files and directories currently installed.) 111s Removing cloud-init (24.1.2-0ubuntu1) ... 111s Removing python3-configobj (5.0.8-3) ... 111s Removing python3-debconf (1.5.86) ... 111s Processing triggers for man-db (2.12.0-3) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51783 files and directories currently installed.) 111s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 112s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 112s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 112s invoke-rc.d: policy-rc.d denied execution of try-restart. 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s linux-generic is already the newest version (6.8.0-11.11+1). 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 113s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 113s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 115s Reading package lists... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Calculating upgrade... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s autopkgtest [09:30:12]: rebooting testbed after setup commands that affected boot 137s autopkgtest [09:30:33]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 140s autopkgtest [09:30:36]: @@@@@@@@@@@@@@@@@@@@ apt-source nanosv 142s Get:1 http://ftpmaster.internal/ubuntu noble/universe nanosv 1.2.4+git20190409.c1ae30c-6 (dsc) [2202 B] 142s Get:2 http://ftpmaster.internal/ubuntu noble/universe nanosv 1.2.4+git20190409.c1ae30c-6 (tar) [2895 kB] 142s Get:3 http://ftpmaster.internal/ubuntu noble/universe nanosv 1.2.4+git20190409.c1ae30c-6 (diff) [4472 B] 142s gpgv: Signature made Sun Oct 24 22:09:09 2021 UTC 142s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 142s gpgv: issuer "nilesh@debian.org" 142s gpgv: Can't check signature: No public key 142s dpkg-source: warning: cannot verify inline signature for ./nanosv_1.2.4+git20190409.c1ae30c-6.dsc: no acceptable signature found 143s autopkgtest [09:30:39]: testing package nanosv version 1.2.4+git20190409.c1ae30c-6 143s autopkgtest [09:30:39]: build not needed 144s autopkgtest [09:30:40]: test run-unit-test: preparing testbed 147s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Starting pkgProblemResolver with broken count: 1 148s Starting 2 pkgProblemResolver with broken count: 1 148s Investigating (0) autopkgtest-satdep:s390x < none -> 0 @un puN Ib > 148s Broken autopkgtest-satdep:s390x Depends on nanosv:s390x < none | 1.2.4+git20190409.c1ae30c-6 @un uH > 148s Considering nanosv:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 148s Reinst Failed early because of python3-pysam:s390x 148s Broken autopkgtest-satdep:s390x Depends on sambamba:s390x < none @un H > 148s Broken autopkgtest-satdep:s390x Depends on samtools:s390x < none | 1.19.2-1 @un uH > 148s Considering samtools:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 148s Re-Instated libdeflate0:s390x 148s Re-Instated libhtscodecs2:s390x 148s Re-Instated libhts3:s390x 148s Re-Instated samtools:s390x 148s Broken autopkgtest-satdep:s390x Depends on bedtools:s390x < none | 2.31.1+dfsg-2 @un uH > 148s Considering bedtools:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 148s Re-Instated bedtools:s390x 148s Done 148s Some packages could not be installed. This may mean that you have 148s requested an impossible situation or if you are using the unstable 148s distribution that some required packages have not yet been created 148s or been moved out of Incoming. 148s The following information may help to resolve the situation: 148s 148s The following packages have unmet dependencies: 148s autopkgtest-satdep : Depends: nanosv but it is not going to be installed 148s Depends: sambamba but it is not installable 148s E: Unable to correct problems, you have held broken packages. 148s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 149s Starting pkgProblemResolver with broken count: 1 149s Starting 2 pkgProblemResolver with broken count: 1 149s Investigating (0) autopkgtest-satdep:s390x < none -> 0 @un puN Ib > 149s Broken autopkgtest-satdep:s390x Depends on nanosv:s390x < none | 1.2.4+git20190409.c1ae30c-6 @un uH > 149s Considering nanosv:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 149s Reinst Failed early because of python3-pysam:s390x 149s Broken autopkgtest-satdep:s390x Depends on sambamba:s390x < none @un H > 149s Broken autopkgtest-satdep:s390x Depends on samtools:s390x < none | 1.19.2-1 @un uH > 149s Considering samtools:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 149s Re-Instated libdeflate0:s390x 149s Re-Instated libhtscodecs2:s390x 149s Re-Instated libhts3:s390x 149s Re-Instated samtools:s390x 149s Broken autopkgtest-satdep:s390x Depends on bedtools:s390x < none | 2.31.1+dfsg-2 @un uH > 149s Considering bedtools:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 149s Re-Instated bedtools:s390x 149s Done 149s Some packages could not be installed. This may mean that you have 149s requested an impossible situation or if you are using the unstable 149s distribution that some required packages have not yet been created 149s or been moved out of Incoming. 149s The following information may help to resolve the situation: 149s 149s The following packages have unmet dependencies: 149s autopkgtest-satdep : Depends: nanosv but it is not going to be installed 149s Depends: sambamba but it is not installable 149s E: Unable to correct problems, you have held broken packages. 149s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 149s Package sambamba is not available, but is referred to by another package. 149s This may mean that the package is missing, has been obsoleted, or 149s is only available from another source 149s 149s E: Package 'sambamba' has no installation candidate 149s run-unit-test SKIP installation fails and skip-not-installable set 149s autopkgtest [09:30:45]: @@@@@@@@@@@@@@@@@@@@ summary 149s run-unit-test SKIP installation fails and skip-not-installable set 160s Creating nova instance adt-noble-s390x-nanosv-20240323-092816-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240322.img (UUID c8671f9a-0e89-48e3-af4f-3c79b89294e8)...