0s autopkgtest [04:28:54]: starting date and time: 2024-03-23 04:28:54+0000 0s autopkgtest [04:28:54]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [04:28:54]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dy6jzz9k/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python-pysam --apt-upgrade nanosv --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python-pysam/0.22.0+ds-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-17.secgroup --name adt-noble-s390x-nanosv-20240323-042853-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 90s autopkgtest [04:30:24]: testbed dpkg architecture: s390x 90s autopkgtest [04:30:24]: testbed apt version: 2.7.12 90s autopkgtest [04:30:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 91s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 91s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 92s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4001 kB] 94s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.7 kB] 94s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 94s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [661 kB] 94s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 94s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 94s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 94s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4154 kB] 95s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 95s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [47.5 kB] 95s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 97s Fetched 9552 kB in 5s (1832 kB/s) 99s Reading package lists... 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s Calculating upgrade... 102s The following packages will be upgraded: 102s libbsd0 102s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Need to get 46.7 kB of archives. 102s After this operation, 0 B of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1 [46.7 kB] 102s Fetched 46.7 kB in 0s (159 kB/s) 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 102s Preparing to unpack .../libbsd0_0.12.1-1_s390x.deb ... 102s Unpacking libbsd0:s390x (0.12.1-1) over (0.11.8-1) ... 102s Setting up libbsd0:s390x (0.12.1-1) ... 102s Processing triggers for libc-bin (2.39-0ubuntu2) ... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Unknown architecture, assuming PC-style ttyS0 104s sh: Attempting to set up Debian/Ubuntu apt sources automatically 104s sh: Distribution appears to be Ubuntu 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s eatmydata is already the newest version (131-1). 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s dbus is already the newest version (1.14.10-4ubuntu1). 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s rng-tools-debian is already the newest version (2.4). 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s The following packages will be REMOVED: 107s cloud-init* python3-configobj* python3-debconf* 107s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 107s After this operation, 3256 kB disk space will be freed. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 107s Removing cloud-init (24.1.2-0ubuntu1) ... 108s Removing python3-configobj (5.0.8-3) ... 108s Removing python3-debconf (1.5.86) ... 108s Processing triggers for man-db (2.12.0-3) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51781 files and directories currently installed.) 108s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 109s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 109s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 109s invoke-rc.d: policy-rc.d denied execution of try-restart. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s linux-generic is already the newest version (6.8.0-11.11+1). 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 110s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 110s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 112s Reading package lists... 112s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s Calculating upgrade... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s autopkgtest [04:30:48]: rebooting testbed after setup commands that affected boot 130s autopkgtest [04:31:04]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 133s autopkgtest [04:31:07]: @@@@@@@@@@@@@@@@@@@@ apt-source nanosv 136s Get:1 http://ftpmaster.internal/ubuntu noble/universe nanosv 1.2.4+git20190409.c1ae30c-6 (dsc) [2202 B] 136s Get:2 http://ftpmaster.internal/ubuntu noble/universe nanosv 1.2.4+git20190409.c1ae30c-6 (tar) [2895 kB] 136s Get:3 http://ftpmaster.internal/ubuntu noble/universe nanosv 1.2.4+git20190409.c1ae30c-6 (diff) [4472 B] 136s gpgv: Signature made Sun Oct 24 22:09:09 2021 UTC 136s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 136s gpgv: issuer "nilesh@debian.org" 136s gpgv: Can't check signature: No public key 136s dpkg-source: warning: cannot verify inline signature for ./nanosv_1.2.4+git20190409.c1ae30c-6.dsc: no acceptable signature found 137s autopkgtest [04:31:11]: testing package nanosv version 1.2.4+git20190409.c1ae30c-6 137s autopkgtest [04:31:11]: build not needed 141s autopkgtest [04:31:15]: test run-unit-test: preparing testbed 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Starting pkgProblemResolver with broken count: 1 148s Starting 2 pkgProblemResolver with broken count: 1 148s Investigating (0) autopkgtest-satdep:s390x < none -> 0 @un puN Ib > 148s Broken autopkgtest-satdep:s390x Depends on nanosv:s390x < none | 1.2.4+git20190409.c1ae30c-6 @un uH > 148s Considering nanosv:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 148s Reinst Failed early because of python3-pysam:s390x 148s Broken autopkgtest-satdep:s390x Depends on sambamba:s390x < none @un H > 148s Broken autopkgtest-satdep:s390x Depends on samtools:s390x < none | 1.19.2-1 @un uH > 148s Considering samtools:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 148s Re-Instated libdeflate0:s390x 148s Re-Instated libhtscodecs2:s390x 148s Re-Instated libhts3:s390x 148s Re-Instated samtools:s390x 148s Broken autopkgtest-satdep:s390x Depends on bedtools:s390x < none | 2.31.1+dfsg-2 @un uH > 148s Considering bedtools:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 148s Re-Instated bedtools:s390x 148s Done 148s Some packages could not be installed. This may mean that you have 148s requested an impossible situation or if you are using the unstable 148s distribution that some required packages have not yet been created 148s or been moved out of Incoming. 148s The following information may help to resolve the situation: 148s 148s The following packages have unmet dependencies: 148s autopkgtest-satdep : Depends: nanosv but it is not going to be installed 148s Depends: sambamba but it is not installable 148s E: Unable to correct problems, you have held broken packages. 148s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 149s Starting pkgProblemResolver with broken count: 1 149s Starting 2 pkgProblemResolver with broken count: 1 149s Investigating (0) autopkgtest-satdep:s390x < none -> 0 @un puN Ib > 149s Broken autopkgtest-satdep:s390x Depends on nanosv:s390x < none | 1.2.4+git20190409.c1ae30c-6 @un uH > 149s Considering nanosv:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 149s Reinst Failed early because of python3-pysam:s390x 149s Broken autopkgtest-satdep:s390x Depends on sambamba:s390x < none @un H > 149s Broken autopkgtest-satdep:s390x Depends on samtools:s390x < none | 1.19.2-1 @un uH > 149s Considering samtools:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 149s Re-Instated libdeflate0:s390x 149s Re-Instated libhtscodecs2:s390x 149s Re-Instated libhts3:s390x 149s Re-Instated samtools:s390x 149s Broken autopkgtest-satdep:s390x Depends on bedtools:s390x < none | 2.31.1+dfsg-2 @un uH > 149s Considering bedtools:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 149s Re-Instated bedtools:s390x 149s Done 149s Some packages could not be installed. This may mean that you have 149s requested an impossible situation or if you are using the unstable 149s distribution that some required packages have not yet been created 149s or been moved out of Incoming. 149s The following information may help to resolve the situation: 149s 149s The following packages have unmet dependencies: 150s autopkgtest-satdep : Depends: nanosv but it is not going to be installed 150s Depends: sambamba but it is not installable 150s E: Unable to correct problems, you have held broken packages. 150s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Package sambamba is not available, but is referred to by another package. 150s This may mean that the package is missing, has been obsoleted, or 150s is only available from another source 150s 150s E: Package 'sambamba' has no installation candidate 150s run-unit-test SKIP installation fails and skip-not-installable set 150s autopkgtest [04:31:24]: @@@@@@@@@@@@@@@@@@@@ summary 150s run-unit-test SKIP installation fails and skip-not-installable set 162s Creating nova instance adt-noble-s390x-nanosv-20240323-042853-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240322.img (UUID c8671f9a-0e89-48e3-af4f-3c79b89294e8)...