0s autopkgtest [11:02:50]: starting date and time: 2024-03-20 11:02:50+0000 0s autopkgtest [11:02:50]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [11:02:50]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fe_kwu4c/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:minimap2 --apt-upgrade nanolyse --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=minimap2/2.26+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-s390x-10.secgroup --name adt-noble-s390x-nanolyse-20240320-110250-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 79s autopkgtest [11:04:09]: testbed dpkg architecture: s390x 79s autopkgtest [11:04:09]: testbed apt version: 2.7.12 79s autopkgtest [11:04:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 79s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 80s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3766 kB] 80s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.7 kB] 80s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 80s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 80s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [653 kB] 80s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 80s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 80s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 80s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4051 kB] 80s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 80s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [34.4 kB] 80s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 83s Fetched 9188 kB in 2s (3720 kB/s) 83s Reading package lists... 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Calculating upgrade... 86s The following packages will be upgraded: 86s ubuntu-minimal ubuntu-standard 87s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 87s Need to get 21.5 kB of archives. 87s After this operation, 0 B of additional disk space will be used. 87s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-minimal s390x 1.536build1 [10.7 kB] 87s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-standard s390x 1.536build1 [10.7 kB] 87s Fetched 21.5 kB in 0s (97.1 kB/s) 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51778 files and directories currently installed.) 87s Preparing to unpack .../ubuntu-minimal_1.536build1_s390x.deb ... 87s Unpacking ubuntu-minimal (1.536build1) over (1.536) ... 87s Preparing to unpack .../ubuntu-standard_1.536build1_s390x.deb ... 87s Unpacking ubuntu-standard (1.536build1) over (1.536) ... 87s Setting up ubuntu-minimal (1.536build1) ... 87s Setting up ubuntu-standard (1.536build1) ... 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 88s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 89s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 89s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 89s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 90s Reading package lists... 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 91s Calculating upgrade... 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s autopkgtest [11:04:24]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 94s autopkgtest [11:04:24]: @@@@@@@@@@@@@@@@@@@@ apt-source nanolyse 96s Get:1 http://ftpmaster.internal/ubuntu noble/universe nanolyse 1.2.0-4 (dsc) [1999 B] 96s Get:2 http://ftpmaster.internal/ubuntu noble/universe nanolyse 1.2.0-4 (tar) [34.0 kB] 96s Get:3 http://ftpmaster.internal/ubuntu noble/universe nanolyse 1.2.0-4 (diff) [4788 B] 96s gpgv: Signature made Thu Nov 24 12:15:17 2022 UTC 96s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 96s gpgv: issuer "tille@debian.org" 96s gpgv: Can't check signature: No public key 96s dpkg-source: warning: cannot verify inline signature for ./nanolyse_1.2.0-4.dsc: no acceptable signature found 96s autopkgtest [11:04:26]: testing package nanolyse version 1.2.0-4 97s autopkgtest [11:04:27]: build not needed 97s autopkgtest [11:04:27]: test run-unit-test: preparing testbed 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Starting pkgProblemResolver with broken count: 0 99s Starting 2 pkgProblemResolver with broken count: 0 99s Done 99s The following additional packages will be installed: 99s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 99s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 99s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 99s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 99s libopenjp2-7 libpixman-1-0 libpython3.11-minimal libpython3.11-stdlib 99s libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 99s libxcb-render0 libxcb-shm0 libxrender1 nanolyse python3-biopython 99s python3-cairo python3-freetype python3-mappy python3-numpy python3-pil 99s python3-reportlab python3-rlpycairo python3.11 python3.11-minimal sgml-base 99s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 99s Suggested packages: 99s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 99s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 99s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 99s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 99s gcc gfortran python3-dev python3-pytest python-pil-doc pdf-viewer 99s python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm 99s python3.11-venv python3.11-doc binfmt-support sgml-base-doc debhelper 99s Recommended packages: 99s python-biopython-doc ncbi-blast+ python3-olefile 99s The following NEW packages will be installed: 99s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-extra 99s fonts-dejavu-mono fonts-urw-base35 libblas3 libcairo2 libdeflate0 99s libfontconfig1 libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 99s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 99s liblcms2-2 libopenjp2-7 libpixman-1-0 libpython3.11-minimal 99s libpython3.11-stdlib libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 99s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 nanolyse 99s python3-biopython python3-cairo python3-freetype python3-mappy python3-numpy 99s python3-pil python3-reportlab python3-rlpycairo python3.11 99s python3.11-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings 99s xfonts-utils xml-core 99s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 99s Need to get 37.0 MB/37.0 MB of archives. 99s After this operation, 124 MB of additional disk space will be used. 99s Get:1 /tmp/autopkgtest.c8sje7/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [708 B] 100s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.11-minimal s390x 3.11.8-1 [838 kB] 100s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x python3.11-minimal s390x 3.11.8-1 [2248 kB] 100s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x sgml-base all 1.31 [11.4 kB] 100s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.11-stdlib s390x 3.11.8-1 [1938 kB] 100s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x python3.11 s390x 3.11.8-1 [589 kB] 100s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 100s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 100s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libfontenc1 s390x 1:1.1.8-1 [14.8 kB] 100s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 100s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 100s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 100s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x xfonts-utils s390x 1:7.7+6build2 [94.8 kB] 100s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 101s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 101s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-extra all 2.37-8 [1947 kB] 101s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 101s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 101s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 101s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 101s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 101s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 101s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 101s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 101s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 101s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 101s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 101s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 101s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libimagequant0 s390x 2.18.0-1 [42.9 kB] 101s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 101s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 101s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 101s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB] 101s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libraqm0 s390x 0.10.1-1 [14.4 kB] 101s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 101s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 101s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 101s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 101s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libwebpdemux2 s390x 1.3.2-0.4 [12.4 kB] 101s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libwebpmux3 s390x 1.3.2-0.4 [25.4 kB] 101s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x python3-numpy s390x 1:1.24.2-2 [5137 kB] 101s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libopenjp2-7 s390x 2.5.0-2 [169 kB] 101s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x python3-pil s390x 10.2.0-1 [519 kB] 101s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x python3-cairo s390x 1.25.1-2 [150 kB] 101s Get:45 http://ftpmaster.internal/ubuntu noble/universe s390x python3-freetype all 2.4.0-1 [83.1 kB] 101s Get:46 http://ftpmaster.internal/ubuntu noble/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B] 101s Get:47 http://ftpmaster.internal/ubuntu noble/universe s390x python3-reportlab all 4.1.0-1 [683 kB] 101s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x xml-core all 0.19 [20.3 kB] 101s Get:49 http://ftpmaster.internal/ubuntu noble/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] 101s Get:50 http://ftpmaster.internal/ubuntu noble/universe s390x python3-biopython s390x 1.81+dfsg-3 [2234 kB] 101s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x python3-mappy s390x 2.26+dfsg-1 [207 kB] 101s Get:52 http://ftpmaster.internal/ubuntu noble/universe s390x nanolyse s390x 1.2.0-4 [25.3 kB] 102s Fetched 37.0 MB in 2s (19.0 MB/s) 102s Selecting previously unselected package libpython3.11-minimal:s390x. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51778 files and directories currently installed.) 102s Preparing to unpack .../00-libpython3.11-minimal_3.11.8-1_s390x.deb ... 102s Unpacking libpython3.11-minimal:s390x (3.11.8-1) ... 102s Selecting previously unselected package python3.11-minimal. 102s Preparing to unpack .../01-python3.11-minimal_3.11.8-1_s390x.deb ... 102s Unpacking python3.11-minimal (3.11.8-1) ... 102s Selecting previously unselected package sgml-base. 102s Preparing to unpack .../02-sgml-base_1.31_all.deb ... 102s Unpacking sgml-base (1.31) ... 102s Selecting previously unselected package libpython3.11-stdlib:s390x. 102s Preparing to unpack .../03-libpython3.11-stdlib_3.11.8-1_s390x.deb ... 102s Unpacking libpython3.11-stdlib:s390x (3.11.8-1) ... 102s Selecting previously unselected package python3.11. 102s Preparing to unpack .../04-python3.11_3.11.8-1_s390x.deb ... 102s Unpacking python3.11 (3.11.8-1) ... 102s Selecting previously unselected package fonts-dejavu-mono. 102s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8_all.deb ... 102s Unpacking fonts-dejavu-mono (2.37-8) ... 102s Selecting previously unselected package fonts-dejavu-core. 102s Preparing to unpack .../06-fonts-dejavu-core_2.37-8_all.deb ... 102s Unpacking fonts-dejavu-core (2.37-8) ... 102s Selecting previously unselected package libfontenc1:s390x. 102s Preparing to unpack .../07-libfontenc1_1%3a1.1.8-1_s390x.deb ... 102s Unpacking libfontenc1:s390x (1:1.1.8-1) ... 102s Selecting previously unselected package libfreetype6:s390x. 102s Preparing to unpack .../08-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 102s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 102s Selecting previously unselected package x11-common. 102s Preparing to unpack .../09-x11-common_1%3a7.7+23ubuntu2_all.deb ... 102s Unpacking x11-common (1:7.7+23ubuntu2) ... 102s Selecting previously unselected package xfonts-encodings. 102s Preparing to unpack .../10-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 102s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 102s Selecting previously unselected package xfonts-utils. 102s Preparing to unpack .../11-xfonts-utils_1%3a7.7+6build2_s390x.deb ... 102s Unpacking xfonts-utils (1:7.7+6build2) ... 102s Selecting previously unselected package fonts-urw-base35. 102s Preparing to unpack .../12-fonts-urw-base35_20200910-8_all.deb ... 102s Unpacking fonts-urw-base35 (20200910-8) ... 103s Selecting previously unselected package fontconfig-config. 103s Preparing to unpack .../13-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 103s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 103s Selecting previously unselected package fonts-dejavu-extra. 103s Preparing to unpack .../14-fonts-dejavu-extra_2.37-8_all.deb ... 103s Unpacking fonts-dejavu-extra (2.37-8) ... 103s Selecting previously unselected package libblas3:s390x. 103s Preparing to unpack .../15-libblas3_3.12.0-3_s390x.deb ... 103s Unpacking libblas3:s390x (3.12.0-3) ... 103s Selecting previously unselected package libfontconfig1:s390x. 103s Preparing to unpack .../16-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 103s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 103s Selecting previously unselected package libpixman-1-0:s390x. 103s Preparing to unpack .../17-libpixman-1-0_0.42.2-1_s390x.deb ... 103s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 103s Selecting previously unselected package libxcb-render0:s390x. 103s Preparing to unpack .../18-libxcb-render0_1.15-1_s390x.deb ... 103s Unpacking libxcb-render0:s390x (1.15-1) ... 103s Selecting previously unselected package libxcb-shm0:s390x. 103s Preparing to unpack .../19-libxcb-shm0_1.15-1_s390x.deb ... 103s Unpacking libxcb-shm0:s390x (1.15-1) ... 103s Selecting previously unselected package libxrender1:s390x. 103s Preparing to unpack .../20-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 103s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 103s Selecting previously unselected package libcairo2:s390x. 103s Preparing to unpack .../21-libcairo2_1.18.0-1_s390x.deb ... 103s Unpacking libcairo2:s390x (1.18.0-1) ... 103s Selecting previously unselected package libdeflate0:s390x. 103s Preparing to unpack .../22-libdeflate0_1.19-1_s390x.deb ... 103s Unpacking libdeflate0:s390x (1.19-1) ... 103s Selecting previously unselected package libgfortran5:s390x. 103s Preparing to unpack .../23-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 103s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 103s Selecting previously unselected package libgomp1:s390x. 103s Preparing to unpack .../24-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 103s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 103s Selecting previously unselected package libgraphite2-3:s390x. 103s Preparing to unpack .../25-libgraphite2-3_1.3.14-2_s390x.deb ... 103s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 103s Selecting previously unselected package libharfbuzz0b:s390x. 103s Preparing to unpack .../26-libharfbuzz0b_8.3.0-2_s390x.deb ... 103s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 103s Selecting previously unselected package libimagequant0:s390x. 103s Preparing to unpack .../27-libimagequant0_2.18.0-1_s390x.deb ... 103s Unpacking libimagequant0:s390x (2.18.0-1) ... 103s Selecting previously unselected package libjpeg-turbo8:s390x. 103s Preparing to unpack .../28-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 103s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 103s Selecting previously unselected package libjpeg8:s390x. 103s Preparing to unpack .../29-libjpeg8_8c-2ubuntu11_s390x.deb ... 103s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 103s Selecting previously unselected package liblapack3:s390x. 103s Preparing to unpack .../30-liblapack3_3.12.0-3_s390x.deb ... 103s Unpacking liblapack3:s390x (3.12.0-3) ... 103s Selecting previously unselected package liblcms2-2:s390x. 103s Preparing to unpack .../31-liblcms2-2_2.14-2_s390x.deb ... 103s Unpacking liblcms2-2:s390x (2.14-2) ... 103s Selecting previously unselected package libraqm0:s390x. 103s Preparing to unpack .../32-libraqm0_0.10.1-1_s390x.deb ... 103s Unpacking libraqm0:s390x (0.10.1-1) ... 103s Selecting previously unselected package libsharpyuv0:s390x. 103s Preparing to unpack .../33-libsharpyuv0_1.3.2-0.4_s390x.deb ... 103s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 103s Selecting previously unselected package libjbig0:s390x. 103s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 103s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 103s Selecting previously unselected package libwebp7:s390x. 103s Preparing to unpack .../35-libwebp7_1.3.2-0.4_s390x.deb ... 103s Unpacking libwebp7:s390x (1.3.2-0.4) ... 103s Selecting previously unselected package libtiff6:s390x. 103s Preparing to unpack .../36-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 103s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 103s Selecting previously unselected package libwebpdemux2:s390x. 103s Preparing to unpack .../37-libwebpdemux2_1.3.2-0.4_s390x.deb ... 103s Unpacking libwebpdemux2:s390x (1.3.2-0.4) ... 103s Selecting previously unselected package libwebpmux3:s390x. 103s Preparing to unpack .../38-libwebpmux3_1.3.2-0.4_s390x.deb ... 103s Unpacking libwebpmux3:s390x (1.3.2-0.4) ... 103s Selecting previously unselected package python3-numpy. 103s Preparing to unpack .../39-python3-numpy_1%3a1.24.2-2_s390x.deb ... 103s Unpacking python3-numpy (1:1.24.2-2) ... 104s Selecting previously unselected package libopenjp2-7:s390x. 104s Preparing to unpack .../40-libopenjp2-7_2.5.0-2_s390x.deb ... 104s Unpacking libopenjp2-7:s390x (2.5.0-2) ... 104s Selecting previously unselected package python3-pil:s390x. 104s Preparing to unpack .../41-python3-pil_10.2.0-1_s390x.deb ... 104s Unpacking python3-pil:s390x (10.2.0-1) ... 104s Selecting previously unselected package python3-cairo. 104s Preparing to unpack .../42-python3-cairo_1.25.1-2_s390x.deb ... 104s Unpacking python3-cairo (1.25.1-2) ... 104s Selecting previously unselected package python3-freetype. 104s Preparing to unpack .../43-python3-freetype_2.4.0-1_all.deb ... 104s Unpacking python3-freetype (2.4.0-1) ... 104s Selecting previously unselected package python3-rlpycairo. 104s Preparing to unpack .../44-python3-rlpycairo_0.3.0-3_all.deb ... 104s Unpacking python3-rlpycairo (0.3.0-3) ... 104s Selecting previously unselected package python3-reportlab. 104s Preparing to unpack .../45-python3-reportlab_4.1.0-1_all.deb ... 104s Unpacking python3-reportlab (4.1.0-1) ... 104s Selecting previously unselected package xml-core. 104s Preparing to unpack .../46-xml-core_0.19_all.deb ... 104s Unpacking xml-core (0.19) ... 104s Selecting previously unselected package w3c-sgml-lib. 104s Preparing to unpack .../47-w3c-sgml-lib_1.3-3_all.deb ... 104s Unpacking w3c-sgml-lib (1.3-3) ... 104s Selecting previously unselected package python3-biopython. 104s Preparing to unpack .../48-python3-biopython_1.81+dfsg-3_s390x.deb ... 104s Unpacking python3-biopython (1.81+dfsg-3) ... 104s Selecting previously unselected package python3-mappy. 104s Preparing to unpack .../49-python3-mappy_2.26+dfsg-1_s390x.deb ... 104s Unpacking python3-mappy (2.26+dfsg-1) ... 104s Selecting previously unselected package nanolyse. 104s Preparing to unpack .../50-nanolyse_1.2.0-4_s390x.deb ... 104s Unpacking nanolyse (1.2.0-4) ... 104s Selecting previously unselected package autopkgtest-satdep. 104s Preparing to unpack .../51-1-autopkgtest-satdep.deb ... 104s Unpacking autopkgtest-satdep (0) ... 104s Setting up libgraphite2-3:s390x (1.3.14-2) ... 104s Setting up liblcms2-2:s390x (2.14-2) ... 104s Setting up libpixman-1-0:s390x (0.42.2-1) ... 104s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 104s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 104s Setting up libxcb-render0:s390x (1.15-1) ... 104s Setting up x11-common (1:7.7+23ubuntu2) ... 105s Setting up libdeflate0:s390x (1.19-1) ... 105s Setting up python3-mappy (2.26+dfsg-1) ... 105s Setting up libxcb-shm0:s390x (1.15-1) ... 105s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 105s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 105s Setting up libfontenc1:s390x (1:1.1.8-1) ... 105s Setting up libblas3:s390x (3.12.0-3) ... 105s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 105s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 105s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 105s Setting up libimagequant0:s390x (2.18.0-1) ... 105s Setting up fonts-dejavu-mono (2.37-8) ... 105s Setting up fonts-dejavu-core (2.37-8) ... 105s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 105s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 105s Setting up libwebp7:s390x (1.3.2-0.4) ... 105s Setting up fonts-dejavu-extra (2.37-8) ... 105s Setting up libopenjp2-7:s390x (2.5.0-2) ... 105s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 105s Setting up sgml-base (1.31) ... 105s Setting up libpython3.11-minimal:s390x (3.11.8-1) ... 105s Setting up libwebpmux3:s390x (1.3.2-0.4) ... 105s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 105s Setting up python3.11-minimal (3.11.8-1) ... 106s Setting up liblapack3:s390x (3.12.0-3) ... 106s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 106s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 106s Setting up libwebpdemux2:s390x (1.3.2-0.4) ... 106s Setting up libpython3.11-stdlib:s390x (3.11.8-1) ... 106s Setting up python3-freetype (2.4.0-1) ... 106s Setting up xfonts-utils (1:7.7+6build2) ... 106s Setting up libraqm0:s390x (0.10.1-1) ... 106s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 106s Setting up xml-core (0.19) ... 106s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 106s Setting up python3.11 (3.11.8-1) ... 107s Setting up fonts-urw-base35 (20200910-8) ... 107s Setting up libcairo2:s390x (1.18.0-1) ... 107s Setting up python3-pil:s390x (10.2.0-1) ... 107s Setting up python3-numpy (1:1.24.2-2) ... 109s Setting up python3-cairo (1.25.1-2) ... 109s Setting up python3-rlpycairo (0.3.0-3) ... 110s Setting up python3-reportlab (4.1.0-1) ... 110s Processing triggers for libc-bin (2.39-0ubuntu2) ... 110s Processing triggers for systemd (255.2-3ubuntu2) ... 110s Processing triggers for man-db (2.12.0-3) ... 111s Processing triggers for sgml-base (1.31) ... 111s Setting up w3c-sgml-lib (1.3-3) ... 139s Setting up python3-biopython (1.81+dfsg-3) ... 141s Setting up nanolyse (1.2.0-4) ... 141s Setting up autopkgtest-satdep (0) ... 145s (Reading database ... 55750 files and directories currently installed.) 145s Removing autopkgtest-satdep (0) ... 146s autopkgtest [11:05:16]: test run-unit-test: [----------------------- 147s NanoLyse: removed 0 reads. 147s autopkgtest [11:05:17]: test run-unit-test: -----------------------] 148s run-unit-test PASS 148s autopkgtest [11:05:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 148s autopkgtest [11:05:18]: @@@@@@@@@@@@@@@@@@@@ summary 148s run-unit-test PASS 162s Creating nova instance adt-noble-s390x-nanolyse-20240320-110250-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240319.img (UUID fdb88291-221e-4465-b557-6bcc22878017)...