0s autopkgtest [14:13:26]: starting date and time: 2024-03-23 14:13:26+0000
  0s autopkgtest [14:13:26]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [14:13:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8wa5xexe/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed --apt-upgrade murasaki --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=imagemagick/8:6.9.12.98+dfsg1-5.2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-6.secgroup --name adt-noble-s390x-murasaki-20240323-141326-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
274s autopkgtest [14:18:00]: testbed dpkg architecture: s390x
274s autopkgtest [14:18:00]: testbed apt version: 2.7.12
274s autopkgtest [14:18:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup
275s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
275s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
275s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
276s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3994 kB]
276s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB]
276s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [652 kB]
276s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B]
276s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B]
276s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B]
276s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4143 kB]
277s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B]
277s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB]
277s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B]
279s Fetched 9522 kB in 3s (3327 kB/s)
279s Reading package lists...
281s Reading package lists...
281s Building dependency tree...
281s Reading state information...
281s Calculating upgrade...
281s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
281s Reading package lists...
281s Building dependency tree...
281s Reading state information...
282s 0 upgraded, 0 newly installed, 0 to remove and 240 not upgraded.
282s Unknown architecture, assuming PC-style ttyS0
282s sh: Attempting to set up Debian/Ubuntu apt sources automatically
282s sh: Distribution appears to be Ubuntu
283s Reading package lists...
283s Building dependency tree...
283s Reading state information...
283s eatmydata is already the newest version (131-1).
283s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
283s Reading package lists...
283s Building dependency tree...
283s Reading state information...
284s dbus is already the newest version (1.14.10-4ubuntu1).
284s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
284s Reading package lists...
284s Building dependency tree...
284s Reading state information...
284s rng-tools-debian is already the newest version (2.4).
284s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
284s Reading package lists...
284s Building dependency tree...
284s Reading state information...
285s The following packages will be REMOVED:
285s   cloud-init* python3-configobj* python3-debconf*
285s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
285s After this operation, 3256 kB disk space will be freed.
285s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 52170 files and directories currently installed.)
285s Removing cloud-init (24.1.2-0ubuntu1) ...
285s Removing python3-configobj (5.0.8-3) ...
285s Removing python3-debconf (1.5.86) ...
285s Processing triggers for man-db (2.12.0-3) ...
286s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 51781 files and directories currently installed.)
286s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
286s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
287s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
287s invoke-rc.d: policy-rc.d denied execution of try-restart.
287s Reading package lists...
287s Building dependency tree...
287s Reading state information...
287s linux-generic is already the newest version (6.8.0-11.11+1).
287s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
288s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
288s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
288s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
290s Reading package lists...
290s Reading package lists...
290s Building dependency tree...
290s Reading state information...
290s Calculating upgrade...
290s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
290s Reading package lists...
290s Building dependency tree...
290s Reading state information...
291s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
291s autopkgtest [14:18:17]: rebooting testbed after setup commands that affected boot
308s autopkgtest [14:18:34]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024
310s autopkgtest [14:18:36]: @@@@@@@@@@@@@@@@@@@@ apt-source murasaki
313s Get:1 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (dsc) [2787 B]
313s Get:2 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (tar) [3944 kB]
313s Get:3 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (tar) [308 kB]
313s Get:4 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (diff) [11.4 kB]
314s gpgv: Signature made Tue Dec 19 15:02:21 2023 UTC
314s gpgv:                using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37
314s gpgv: Can't check signature: No public key
314s dpkg-source: warning: cannot verify inline signature for ./murasaki_1.68.6-13build4.dsc: no acceptable signature found
314s autopkgtest [14:18:40]: testing package murasaki version 1.68.6-13build4
314s autopkgtest [14:18:40]: build not needed
315s autopkgtest [14:18:41]: test run-unit-test: preparing testbed
320s Reading package lists...
320s Building dependency tree...
320s Reading state information...
320s Starting pkgProblemResolver with broken count: 0
320s Starting 2 pkgProblemResolver with broken count: 0
320s Done
320s The following additional packages will be installed:
320s   adwaita-icon-theme aglfn at-spi2-common autoconf automake autotools-dev
320s   cpp-13-s390x-linux-gnu dconf-gsettings-backend dconf-service fontconfig
320s   fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-13
320s   gcc-13-s390x-linux-gnu gfortran-13 gfortran-13-s390x-linux-gnu gnuplot
320s   gnuplot-data gnuplot-qt gtk-update-icon-cache hicolor-icon-theme
320s   humanity-icon-theme icu-devtools imagemagick imagemagick-6-common
320s   imagemagick-6.q16 libasan8 libatk-bridge2.0-0 libatk1.0-0 libatomic1
320s   libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3
320s   libbio-perl-perl libblas3 libboost-atomic1.83-dev libboost-atomic1.83.0
320s   libboost-filesystem-dev libboost-filesystem1.83-dev
320s   libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev
320s   libboost-iostreams1.83.0 libboost-regex-dev libboost-regex1.83-dev
320s   libboost-regex1.83.0 libboost-system1.83-dev libboost-system1.83.0
320s   libboost1.83-dev libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcc1-0
320s   libcolord2 libcrypt-dev libcrypto++-dev libcrypto++8t64 libcups2
320s   libdata-stag-perl libdatrie1 libdav1d7 libdconf1 libde265-0 libdeflate0
320s   libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1
320s   libegl-mesa0 libegl1 libepoxy0 libevent-2.1-7 libevent-dev
320s   libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7
320s   libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgbm1
320s   libgcc-13-dev libgd3 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common
320s   libgfortran-13-dev libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa
320s   libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk-3-0
320s   libgtk-3-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265
320s   libheif1 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libice6
320s   libicu-dev libinput-bin libinput10 libio-string-perl libisl23 libitm1
320s   libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3
320s   liblcms2-2 libllvm17 liblqr-1-0 libltdl-dev libltdl7 liblua5.4-0
320s   libmagickcore-6.q16-7 libmagickwand-6.q16-7 libmd4c0 libmpc3 libmtdev1
320s   libmunge2 libnl-3-dev libnl-route-3-dev libnotify4 libnuma-dev libopenjp2-7
320s   libopenmpi-dev libopenmpi3 libpango-1.0-0 libpangocairo-1.0-0
320s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre2-16-0
320s   libpcre2-32-0 libpixman-1-0 libpmix-dev libpmix2 libpstreams-dev
320s   libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5
320s   libqt5svg5 libqt5widgets5 libraw23 librdmacm1t64 libsharpyuv0 libsm6
320s   libstdc++-13-dev libtcl8.6 libterm-readkey-perl libtext-wrapper-perl
320s   libthai-data libthai0 libtiff6 libtk8.6 libubsan1 libvulkan1 libwacom-common
320s   libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1
320s   libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1
320s   libwxgtk3.2-1 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
320s   libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
320s   libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
320s   libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
320s   libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6
320s   libxinerama1 libxkbcommon-x11-0 libxnvctrl0 libxpm4 libxrandr2 libxrender1
320s   libxshmfence1 libxss1 libxt6 libxtst6 libxxf86vm1 linux-libc-dev m4 murasaki
320s   murasaki-common murasaki-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common
320s   r-base-core r-cran-bitops r-cran-catools r-cran-gdata r-cran-gplots
320s   r-cran-gtools r-cran-kernsmooth r-cran-mass r-cran-rocr rpcsvc-proto
320s   ubuntu-mono unzip x11-common xdg-utils zip zlib1g-dev
320s Suggested packages:
320s   autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-13-locales
320s   cpp-13-doc gcc-13-multilib gcc-13-doc gfortran-13-multilib gfortran-13-doc
320s   libcoarrays-dev gnuplot-doc imagemagick-6-doc autotrace cups-bsd | lpr
320s   | lprng enscript ffmpeg gimp grads graphviz hp2xx html2ps libwmf-bin mplayer
320s   povray radiance sane-utils texlive-base-bin transfig libraw-bin bioperl
320s   libxml-sax-expatxs-perl libboost1.83-doc libboost-chrono1.83-dev
320s   libboost-container1.83-dev libboost-context1.83-dev
320s   libboost-contract1.83-dev libboost-coroutine1.83-dev
320s   libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
320s   libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-json1.83-dev
320s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
320s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
320s   libboost-numpy1.83-dev libboost-program-options1.83-dev
320s   libboost-python1.83-dev libboost-random1.83-dev
320s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
320s   libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev
320s   libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev
320s   libboost1.83-tools-dev libmpfrc++-dev libntl-dev glibc-doc manpages-dev
320s   colord cups-common libfftw3-bin libfftw3-dev libgd-tools gvfs
320s   libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc
320s   libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e
320s   libheif-plugin-svtenc icu-doc libjs-jquery-ui-docs liblcms2-utils
320s   libtool-doc libmagickcore-6.q16-7-extra notification-daemon openmpi-doc
320s   qgnomeplatform-qt5 qt5-image-formats-plugins libstdc++-13-doc tcl8.6 tk8.6
320s   libwacom-bin m4-doc opencl-icd gfortran | fortran-compiler elpa-ess
320s   r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rpart r-cran-knitr
320s   r-cran-rmarkdown
320s Recommended packages:
320s   librsvg2-common libmagickcore-6.q16-7-extra ghostscript netpbm at-spi2-core
320s   bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl
320s   libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl
320s   libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
320s   libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl
320s   libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl
320s   libset-scalar-perl libsoap-lite-perl libsort-naturally-perl
320s   libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl
320s   libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl
320s   libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl
320s   libxml-writer-perl libxml-libxml-perl libwww-perl manpages manpages-dev
320s   libc-devtools perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl
320s   libxml-libxslt-perl libmldbm-perl libxml-perl libgdk-pixbuf2.0-bin
320s   libgl1-amber-dri libgtk-3-bin libheif-plugin-aomenc libheif-plugin-x265
320s   javascript-common libtool fonts-urw-base35 libcoarrays-openmpi-dev
320s   qttranslations5-l10n qt5-gtk-platformtheme qtwayland5 mesa-vulkan-drivers
320s   | vulkan-icd r-recommended r-base-dev r-doc-html r-cran-testthat
320s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
320s   x11-xserver-utils
320s The following NEW packages will be installed:
320s   adwaita-icon-theme aglfn at-spi2-common autoconf automake autopkgtest-satdep
320s   autotools-dev cpp-13-s390x-linux-gnu dconf-gsettings-backend dconf-service
320s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-13
320s   gcc-13-s390x-linux-gnu gfortran-13 gfortran-13-s390x-linux-gnu gnuplot
320s   gnuplot-data gnuplot-qt gtk-update-icon-cache hicolor-icon-theme
320s   humanity-icon-theme icu-devtools imagemagick imagemagick-6-common
320s   imagemagick-6.q16 libasan8 libatk-bridge2.0-0 libatk1.0-0 libatomic1
320s   libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3
320s   libbio-perl-perl libblas3 libboost-atomic1.83-dev libboost-atomic1.83.0
320s   libboost-filesystem-dev libboost-filesystem1.83-dev
320s   libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev
320s   libboost-iostreams1.83.0 libboost-regex-dev libboost-regex1.83-dev
320s   libboost-regex1.83.0 libboost-system1.83-dev libboost-system1.83.0
320s   libboost1.83-dev libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcc1-0
320s   libcolord2 libcrypt-dev libcrypto++-dev libcrypto++8t64 libcups2
320s   libdata-stag-perl libdatrie1 libdav1d7 libdconf1 libde265-0 libdeflate0
320s   libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1
320s   libegl-mesa0 libegl1 libepoxy0 libevent-2.1-7 libevent-dev
320s   libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7
320s   libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgbm1
320s   libgcc-13-dev libgd3 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common
320s   libgfortran-13-dev libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa
320s   libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk-3-0
320s   libgtk-3-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265
320s   libheif1 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libice6
320s   libicu-dev libinput-bin libinput10 libio-string-perl libisl23 libitm1
320s   libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3
320s   liblcms2-2 libllvm17 liblqr-1-0 libltdl-dev libltdl7 liblua5.4-0
320s   libmagickcore-6.q16-7 libmagickwand-6.q16-7 libmd4c0 libmpc3 libmtdev1
320s   libmunge2 libnl-3-dev libnl-route-3-dev libnotify4 libnuma-dev libopenjp2-7
320s   libopenmpi-dev libopenmpi3 libpango-1.0-0 libpangocairo-1.0-0
320s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre2-16-0
320s   libpcre2-32-0 libpixman-1-0 libpmix-dev libpmix2 libpstreams-dev
320s   libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5
320s   libqt5svg5 libqt5widgets5 libraw23 librdmacm1t64 libsharpyuv0 libsm6
320s   libstdc++-13-dev libtcl8.6 libterm-readkey-perl libtext-wrapper-perl
320s   libthai-data libthai0 libtiff6 libtk8.6 libubsan1 libvulkan1 libwacom-common
320s   libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1
320s   libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1
320s   libwxgtk3.2-1 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
320s   libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
320s   libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
320s   libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
320s   libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6
320s   libxinerama1 libxkbcommon-x11-0 libxnvctrl0 libxpm4 libxrandr2 libxrender1
320s   libxshmfence1 libxss1 libxt6 libxtst6 libxxf86vm1 linux-libc-dev m4 murasaki
320s   murasaki-common murasaki-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common
320s   r-base-core r-cran-bitops r-cran-catools r-cran-gdata r-cran-gplots
320s   r-cran-gtools r-cran-kernsmooth r-cran-mass r-cran-rocr rpcsvc-proto
320s   ubuntu-mono unzip x11-common xdg-utils zip zlib1g-dev
320s 0 upgraded, 245 newly installed, 0 to remove and 0 not upgraded.
320s Need to get 220 MB/220 MB of archives.
320s After this operation, 926 MB of additional disk space will be used.
320s Get:1 /tmp/autopkgtest.SNY1Dd/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [796 B]
321s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB]
321s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-double3 s390x 3.3.10-1ubuntu1 [465 kB]
321s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB]
321s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
321s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
321s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB]
321s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB]
321s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB]
321s Get:10 http://ftpmaster.internal/ubuntu noble/universe s390x libdav1d7 s390x 1.4.0-1 [316 kB]
321s Get:11 http://ftpmaster.internal/ubuntu noble/universe s390x libheif-plugin-dav1d s390x 1.17.6-1ubuntu1 [11.1 kB]
321s Get:12 http://ftpmaster.internal/ubuntu noble/universe s390x libde265-0 s390x 1.0.15-1 [201 kB]
321s Get:13 http://ftpmaster.internal/ubuntu noble/universe s390x libheif-plugin-libde265 s390x 1.17.6-1ubuntu1 [9250 B]
321s Get:14 http://ftpmaster.internal/ubuntu noble/universe s390x libheif1 s390x 1.17.6-1ubuntu1 [354 kB]
321s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB]
321s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB]
321s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
321s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB]
321s Get:19 http://ftpmaster.internal/ubuntu noble/universe s390x liblqr-1-0 s390x 0.4.2-2.1 [26.8 kB]
321s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libltdl7 s390x 2.4.7-7 [41.6 kB]
321s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libopenjp2-7 s390x 2.5.0-2 [169 kB]
322s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libraw23 s390x 0.21.2-2 [417 kB]
322s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB]
322s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB]
322s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB]
322s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libwebpdemux2 s390x 1.3.2-0.4 [12.4 kB]
322s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libwebpmux3 s390x 1.3.2-0.4 [25.4 kB]
322s Get:28 http://ftpmaster.internal/ubuntu noble/universe s390x imagemagick-6-common all 8:6.9.12.98+dfsg1-5 [69.2 kB]
322s Get:29 http://ftpmaster.internal/ubuntu noble/universe s390x libmagickcore-6.q16-7 s390x 8:6.9.12.98+dfsg1-5 [1891 kB]
322s Get:30 http://ftpmaster.internal/ubuntu noble/universe s390x libmagickwand-6.q16-7 s390x 8:6.9.12.98+dfsg1-5 [344 kB]
322s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B]
322s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libgdk-pixbuf-2.0-0 s390x 2.42.10+dfsg-3 [152 kB]
322s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x gtk-update-icon-cache s390x 3.24.40-2ubuntu1 [51.0 kB]
322s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x hicolor-icon-theme all 0.17-2 [9976 B]
322s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x humanity-icon-theme all 0.6.16 [1282 kB]
322s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-mono all 24.04-0ubuntu1 [151 kB]
322s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x adwaita-icon-theme all 46~rc-1 [723 kB]
322s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x at-spi2-common all 2.50.0-1 [7864 B]
322s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x m4 s390x 1.4.19-4 [255 kB]
322s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x autoconf all 2.71-3 [339 kB]
322s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x autotools-dev all 20220109.1 [44.9 kB]
322s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB]
322s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB]
322s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB]
322s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB]
323s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libdconf1 s390x 0.40.0-4 [38.9 kB]
323s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x dconf-service s390x 0.40.0-4 [27.0 kB]
323s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x dconf-gsettings-backend s390x 0.40.0-4 [21.6 kB]
323s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB]
323s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB]
323s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB]
323s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B]
323s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB]
323s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB]
323s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB]
323s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB]
324s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB]
324s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB]
324s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB]
324s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu6 [20.2 kB]
324s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB]
324s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB]
324s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB]
324s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu6 [1629 kB]
324s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB]
324s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB]
324s Get:67 http://ftpmaster.internal/ubuntu noble/universe s390x aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB]
324s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x gnuplot-data all 5.4.4+dfsg1-2build1 [74.6 kB]
324s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB]
324s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB]
324s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B]
324s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB]
324s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB]
324s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB]
324s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libgd3 s390x 2.3.3-9ubuntu1 [127 kB]
324s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB]
324s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB]
324s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB]
324s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB]
324s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB]
324s Get:81 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB]
324s Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB]
324s Get:83 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB]
324s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB]
325s Get:85 http://ftpmaster.internal/ubuntu noble/universe s390x libdouble-conversion3 s390x 3.3.0-1 [39.6 kB]
325s Get:86 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB]
325s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5core5a s390x 5.15.12+dfsg-3ubuntu1 [2258 kB]
325s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libglvnd0 s390x 1.7.0-1 [106 kB]
325s Get:89 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-server0 s390x 1.22.0-2.1 [34.9 kB]
325s Get:90 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-randr0 s390x 1.15-1 [19.0 kB]
325s Get:91 http://ftpmaster.internal/ubuntu noble/main s390x libgbm1 s390x 24.0.1-1ubuntu1 [44.0 kB]
325s Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libglapi-mesa s390x 24.0.1-1ubuntu1 [68.7 kB]
325s Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-client0 s390x 1.22.0-2.1 [26.1 kB]
325s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libx11-xcb1 s390x 2:1.8.7-1 [7778 B]
325s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri2-0 s390x 1.15-1 [7426 B]
325s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri3-0 s390x 1.15-1 [7270 B]
325s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-present0 s390x 1.15-1 [5752 B]
325s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-sync1 s390x 1.15-1 [9392 B]
325s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xfixes0 s390x 1.15-1 [10.5 kB]
325s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libxshmfence1 s390x 1.3-1build4 [5334 B]
325s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libegl-mesa0 s390x 24.0.1-1ubuntu1 [123 kB]
325s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libegl1 s390x 1.7.0-1 [30.9 kB]
325s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-glx0 s390x 1.15-1 [25.8 kB]
325s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libxfixes3 s390x 1:6.0.0-2 [10.6 kB]
325s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libxxf86vm1 s390x 1:1.1.4-1build3 [9900 B]
325s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libvulkan1 s390x 1.3.275.0-1 [155 kB]
325s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-amdgpu1 s390x 2.4.120-2 [21.1 kB]
325s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-nouveau2 s390x 2.4.120-2 [18.5 kB]
325s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-radeon1 s390x 2.4.120-2 [22.7 kB]
325s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libllvm17 s390x 1:17.0.6-5build1 [31.2 MB]
326s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x libgl1-mesa-dri s390x 24.0.1-1ubuntu1 [7184 kB]
327s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x libglx-mesa0 s390x 24.0.1-1ubuntu1 [182 kB]
327s Get:113 http://ftpmaster.internal/ubuntu noble/main s390x libglx0 s390x 1.7.0-1 [31.4 kB]
327s Get:114 http://ftpmaster.internal/ubuntu noble/main s390x libgl1 s390x 1.7.0-1 [137 kB]
327s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB]
327s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB]
327s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libmtdev1 s390x 1.1.6-1build4 [14.6 kB]
327s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libwacom-common all 2.10.0-1 [63.3 kB]
327s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libwacom9 s390x 2.10.0-1 [24.2 kB]
327s Get:120 http://ftpmaster.internal/ubuntu noble/main s390x libinput-bin s390x 1.25.0-1 [22.0 kB]
327s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libinput10 s390x 1.25.0-1 [136 kB]
327s Get:122 http://ftpmaster.internal/ubuntu noble/universe s390x libmd4c0 s390x 0.4.8-1 [43.6 kB]
327s Get:123 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5dbus5 s390x 5.15.12+dfsg-3ubuntu1 [244 kB]
327s Get:124 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5network5 s390x 5.15.12+dfsg-3ubuntu1 [798 kB]
327s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB]
327s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-icccm4 s390x 0.4.1-1.1build2 [11.5 kB]
327s Get:127 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-util1 s390x 0.4.0-1build2 [11.2 kB]
327s Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-image0 s390x 0.4.0-2 [11.8 kB]
327s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-keysyms1 s390x 0.4.0-1build3 [8780 B]
327s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render-util0 s390x 0.3.9-1build3 [10.1 kB]
327s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shape0 s390x 1.15-1 [6146 B]
327s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xinerama0 s390x 1.15-1 [5382 B]
327s Get:133 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xinput0 s390x 1.15-1 [34.6 kB]
327s Get:134 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xkb1 s390x 1.15-1 [32.3 kB]
327s Get:135 http://ftpmaster.internal/ubuntu noble/main s390x libxkbcommon-x11-0 s390x 1.6.0-1 [14.8 kB]
327s Get:136 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5gui5 s390x 5.15.12+dfsg-3ubuntu1 [4203 kB]
327s Get:137 http://ftpmaster.internal/ubuntu noble/main s390x libavahi-common-data s390x 0.8-13ubuntu2 [29.5 kB]
327s Get:138 http://ftpmaster.internal/ubuntu noble/main s390x libavahi-common3 s390x 0.8-13ubuntu2 [23.8 kB]
327s Get:139 http://ftpmaster.internal/ubuntu noble/main s390x libavahi-client3 s390x 0.8-13ubuntu2 [26.7 kB]
327s Get:140 http://ftpmaster.internal/ubuntu noble/main s390x libcups2 s390x 2.4.6-0ubuntu3 [277 kB]
327s Get:141 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5widgets5 s390x 5.15.12+dfsg-3ubuntu1 [2753 kB]
327s Get:142 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5printsupport5 s390x 5.15.12+dfsg-3ubuntu1 [220 kB]
327s Get:143 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5svg5 s390x 5.15.12-1 [192 kB]
327s Get:144 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB]
327s Get:145 http://ftpmaster.internal/ubuntu noble/universe s390x libwxbase3.2-1 s390x 3.2.4+dfsg-3 [925 kB]
327s Get:146 http://ftpmaster.internal/ubuntu noble/main s390x libatk1.0-0 s390x 2.50.0-1 [54.4 kB]
327s Get:147 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB]
327s Get:148 http://ftpmaster.internal/ubuntu noble/main s390x libatspi2.0-0 s390x 2.50.0-1 [77.9 kB]
327s Get:149 http://ftpmaster.internal/ubuntu noble/main s390x libatk-bridge2.0-0 s390x 2.50.0-1 [65.3 kB]
327s Get:150 http://ftpmaster.internal/ubuntu noble/main s390x libcairo-gobject2 s390x 1.18.0-1 [126 kB]
327s Get:151 http://ftpmaster.internal/ubuntu noble/main s390x libcolord2 s390x 1.4.7-1 [151 kB]
327s Get:152 http://ftpmaster.internal/ubuntu noble/main s390x libepoxy0 s390x 1.5.10-1 [232 kB]
327s Get:153 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-cursor0 s390x 1.22.0-2.1 [11.1 kB]
327s Get:154 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-egl1 s390x 1.22.0-2.1 [5452 B]
327s Get:155 http://ftpmaster.internal/ubuntu noble/main s390x libxcomposite1 s390x 1:0.4.5-1build2 [6952 B]
327s Get:156 http://ftpmaster.internal/ubuntu noble/main s390x libxcursor1 s390x 1:1.2.1-1 [22.2 kB]
327s Get:157 http://ftpmaster.internal/ubuntu noble/main s390x libxdamage1 s390x 1:1.1.6-1 [5810 B]
327s Get:158 http://ftpmaster.internal/ubuntu noble/main s390x libxinerama1 s390x 2:1.1.4-3 [7110 B]
327s Get:159 http://ftpmaster.internal/ubuntu noble/main s390x libxrandr2 s390x 2:1.5.2-2 [19.5 kB]
327s Get:160 http://ftpmaster.internal/ubuntu noble/main s390x libgtk-3-common all 3.24.40-2ubuntu1 [1200 kB]
327s Get:161 http://ftpmaster.internal/ubuntu noble/main s390x libgtk-3-0 s390x 3.24.40-2ubuntu1 [2952 kB]
327s Get:162 http://ftpmaster.internal/ubuntu noble/main s390x libnotify4 s390x 0.8.3-1 [25.0 kB]
327s Get:163 http://ftpmaster.internal/ubuntu noble/main s390x libxtst6 s390x 2:1.2.3-1.1 [13.4 kB]
327s Get:164 http://ftpmaster.internal/ubuntu noble/universe s390x libwxgtk3.2-1 s390x 3.2.4+dfsg-3 [4739 kB]
327s Get:165 http://ftpmaster.internal/ubuntu noble/universe s390x gnuplot-qt s390x 5.4.4+dfsg1-2build1 [1099 kB]
327s Get:166 http://ftpmaster.internal/ubuntu noble/universe s390x gnuplot all 5.4.4+dfsg1-2build1 [3584 B]
327s Get:167 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB]
327s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x imagemagick-6.q16 s390x 8:6.9.12.98+dfsg1-5 [254 kB]
327s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x imagemagick s390x 8:6.9.12.98+dfsg1-5 [14.2 kB]
327s Get:170 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB]
327s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x libdata-stag-perl all 0.14-3 [372 kB]
327s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x libbio-perl-perl all 1.7.8-1 [2580 kB]
328s Get:173 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB]
328s Get:174 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB]
328s Get:175 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB]
328s Get:176 http://ftpmaster.internal/ubuntu noble/main s390x libboost-atomic1.83.0 s390x 1.83.0-2ubuntu1 [316 kB]
328s Get:177 http://ftpmaster.internal/ubuntu noble/main s390x libboost-atomic1.83-dev s390x 1.83.0-2ubuntu1 [312 kB]
328s Get:178 http://ftpmaster.internal/ubuntu noble/main s390x libboost-filesystem1.83.0 s390x 1.83.0-2ubuntu1 [372 kB]
328s Get:179 http://ftpmaster.internal/ubuntu noble/main s390x libboost-system1.83.0 s390x 1.83.0-2ubuntu1 [312 kB]
328s Get:180 http://ftpmaster.internal/ubuntu noble/main s390x libboost-system1.83-dev s390x 1.83.0-2ubuntu1 [308 kB]
328s Get:181 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-filesystem1.83-dev s390x 1.83.0-2ubuntu1 [400 kB]
328s Get:182 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-filesystem-dev s390x 1.83.0.1ubuntu2 [4096 B]
328s Get:183 http://ftpmaster.internal/ubuntu noble/main s390x libboost-regex1.83.0 s390x 1.83.0-2ubuntu1 [449 kB]
328s Get:184 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB]
328s Get:185 http://ftpmaster.internal/ubuntu noble/main s390x libboost-regex1.83-dev s390x 1.83.0-2ubuntu1 [486 kB]
328s Get:186 http://ftpmaster.internal/ubuntu noble/main s390x libboost-iostreams1.83.0 s390x 1.83.0-2ubuntu1 [340 kB]
328s Get:187 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-iostreams1.83-dev s390x 1.83.0-2ubuntu1 [351 kB]
328s Get:188 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-iostreams-dev s390x 1.83.0.1ubuntu2 [4048 B]
328s Get:189 http://ftpmaster.internal/ubuntu noble/main s390x libboost-regex-dev s390x 1.83.0.1ubuntu2 [4324 B]
328s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x libcrypto++8t64 s390x 8.9.0-1.1 [1181 kB]
329s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x libcrypto++-dev s390x 8.9.0-1.1 [2051 kB]
329s Get:192 http://ftpmaster.internal/ubuntu noble/main s390x libevent-2.1-7 s390x 2.1.12-stable-9 [144 kB]
329s Get:193 http://ftpmaster.internal/ubuntu noble/main s390x libevent-extra-2.1-7 s390x 2.1.12-stable-9 [63.6 kB]
329s Get:194 http://ftpmaster.internal/ubuntu noble/main s390x libevent-pthreads-2.1-7 s390x 2.1.12-stable-9 [7692 B]
329s Get:195 http://ftpmaster.internal/ubuntu noble/main s390x libevent-openssl-2.1-7 s390x 2.1.12-stable-9 [15.0 kB]
329s Get:196 http://ftpmaster.internal/ubuntu noble/main s390x libevent-dev s390x 2.1.12-stable-9 [275 kB]
329s Get:197 http://ftpmaster.internal/ubuntu noble/main s390x librdmacm1t64 s390x 50.0-2 [74.1 kB]
329s Get:198 http://ftpmaster.internal/ubuntu noble/universe s390x libfabric1 s390x 1.17.0-3build1 [566 kB]
329s Get:199 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc15 s390x 2.10.0-1 [174 kB]
329s Get:200 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
329s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
329s Get:202 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB]
329s Get:203 http://ftpmaster.internal/ubuntu noble/main s390x libltdl-dev s390x 2.4.7-7 [170 kB]
329s Get:204 http://ftpmaster.internal/ubuntu noble/main s390x libnl-3-dev s390x 3.7.0-0.3 [104 kB]
329s Get:205 http://ftpmaster.internal/ubuntu noble/main s390x libnl-route-3-dev s390x 3.7.0-0.3 [218 kB]
329s Get:206 http://ftpmaster.internal/ubuntu noble/universe s390x libmunge2 s390x 0.5.15-3ubuntu1 [17.3 kB]
329s Get:207 http://ftpmaster.internal/ubuntu noble/main s390x libpciaccess0 s390x 0.17-3 [18.5 kB]
329s Get:208 http://ftpmaster.internal/ubuntu noble/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu1 [11.7 kB]
330s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1 [39.1 kB]
330s Get:210 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-plugins s390x 2.10.0-1 [16.1 kB]
330s Get:211 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix2 s390x 5.0.1-4 [722 kB]
330s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi3 s390x 4.1.6-5ubuntu1 [3024 kB]
331s Get:213 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB]
331s Get:214 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B]
331s Get:215 http://ftpmaster.internal/ubuntu noble/main s390x libnuma-dev s390x 2.0.18-1 [38.9 kB]
331s Get:216 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-dev s390x 2.10.0-1 [270 kB]
331s Get:217 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB]
332s Get:218 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix-dev s390x 5.0.1-4 [4027 kB]
333s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x libpstreams-dev all 1.0.3-1 [115 kB]
333s Get:220 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB]
333s Get:221 http://ftpmaster.internal/ubuntu noble/main s390x libterm-readkey-perl s390x 2.38-2build2 [23.0 kB]
333s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x libtext-wrapper-perl all 1.05-4 [9820 B]
333s Get:223 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB]
334s Get:224 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B]
334s Get:225 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.14-1 [833 kB]
334s Get:226 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB]
334s Get:227 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB]
334s Get:228 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB]
334s Get:229 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
334s Get:230 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB]
341s Get:231 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtools s390x 3.9.5-1 [340 kB]
341s Get:232 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB]
341s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-catools s390x 1.18.2-1 [201 kB]
341s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB]
341s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-kernsmooth s390x 2.23-22-1 [93.0 kB]
341s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gdata all 3.0.0-1 [483 kB]
341s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gplots all 3.1.3.1-1 [589 kB]
341s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rocr all 1.0-11-2build1 [446 kB]
341s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x murasaki-common all 1.68.6-13build4 [146 kB]
341s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x murasaki s390x 1.68.6-13build4 [971 kB]
341s Get:241 http://ftpmaster.internal/ubuntu noble/universe s390x murasaki-mpi s390x 1.68.6-13build4 [1201 kB]
342s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-common all 4.1.6-5ubuntu1 [178 kB]
342s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-bin s390x 4.1.6-5ubuntu1 [92.5 kB]
342s Get:244 http://ftpmaster.internal/ubuntu noble/main s390x libibverbs-dev s390x 50.0-2 [717 kB]
342s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi-dev s390x 4.1.6-5ubuntu1 [1571 kB]
343s Preconfiguring packages ...
343s Fetched 220 MB in 22s (10.1 MB/s)
343s Selecting previously unselected package libgomp1:s390x.
343s (Reading database ... 
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(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 51726 files and directories currently installed.)
343s Preparing to unpack .../000-libgomp1_14-20240303-1ubuntu1_s390x.deb ...
343s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ...
343s Selecting previously unselected package libfftw3-double3:s390x.
343s Preparing to unpack .../001-libfftw3-double3_3.3.10-1ubuntu1_s390x.deb ...
343s Unpacking libfftw3-double3:s390x (3.3.10-1ubuntu1) ...
343s Selecting previously unselected package libfreetype6:s390x.
343s Preparing to unpack .../002-libfreetype6_2.13.2+dfsg-1_s390x.deb ...
343s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ...
343s Selecting previously unselected package fonts-dejavu-mono.
343s Preparing to unpack .../003-fonts-dejavu-mono_2.37-8_all.deb ...
343s Unpacking fonts-dejavu-mono (2.37-8) ...
343s Selecting previously unselected package fonts-dejavu-core.
343s Preparing to unpack .../004-fonts-dejavu-core_2.37-8_all.deb ...
343s Unpacking fonts-dejavu-core (2.37-8) ...
343s Selecting previously unselected package fontconfig-config.
343s Preparing to unpack .../005-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ...
343s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
343s Selecting previously unselected package libfontconfig1:s390x.
343s Preparing to unpack .../006-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ...
343s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ...
343s Selecting previously unselected package libsharpyuv0:s390x.
343s Preparing to unpack .../007-libsharpyuv0_1.3.2-0.4_s390x.deb ...
343s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ...
343s Selecting previously unselected package libdav1d7:s390x.
343s Preparing to unpack .../008-libdav1d7_1.4.0-1_s390x.deb ...
343s Unpacking libdav1d7:s390x (1.4.0-1) ...
343s Selecting previously unselected package libheif-plugin-dav1d:s390x.
343s Preparing to unpack .../009-libheif-plugin-dav1d_1.17.6-1ubuntu1_s390x.deb ...
343s Unpacking libheif-plugin-dav1d:s390x (1.17.6-1ubuntu1) ...
343s Selecting previously unselected package libde265-0:s390x.
343s Preparing to unpack .../010-libde265-0_1.0.15-1_s390x.deb ...
343s Unpacking libde265-0:s390x (1.0.15-1) ...
343s Selecting previously unselected package libheif-plugin-libde265:s390x.
343s Preparing to unpack .../011-libheif-plugin-libde265_1.17.6-1ubuntu1_s390x.deb ...
343s Unpacking libheif-plugin-libde265:s390x (1.17.6-1ubuntu1) ...
343s Selecting previously unselected package libheif1:s390x.
343s Preparing to unpack .../012-libheif1_1.17.6-1ubuntu1_s390x.deb ...
343s Unpacking libheif1:s390x (1.17.6-1ubuntu1) ...
343s Selecting previously unselected package libjbig0:s390x.
343s Preparing to unpack .../013-libjbig0_2.1-6.1ubuntu1_s390x.deb ...
343s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ...
343s Selecting previously unselected package libjpeg-turbo8:s390x.
343s Preparing to unpack .../014-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ...
343s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ...
343s Selecting previously unselected package libjpeg8:s390x.
343s Preparing to unpack .../015-libjpeg8_8c-2ubuntu11_s390x.deb ...
343s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
343s Selecting previously unselected package liblcms2-2:s390x.
343s Preparing to unpack .../016-liblcms2-2_2.14-2_s390x.deb ...
343s Unpacking liblcms2-2:s390x (2.14-2) ...
343s Selecting previously unselected package liblqr-1-0:s390x.
343s Preparing to unpack .../017-liblqr-1-0_0.4.2-2.1_s390x.deb ...
343s Unpacking liblqr-1-0:s390x (0.4.2-2.1) ...
344s Selecting previously unselected package libltdl7:s390x.
344s Preparing to unpack .../018-libltdl7_2.4.7-7_s390x.deb ...
344s Unpacking libltdl7:s390x (2.4.7-7) ...
344s Selecting previously unselected package libopenjp2-7:s390x.
344s Preparing to unpack .../019-libopenjp2-7_2.5.0-2_s390x.deb ...
344s Unpacking libopenjp2-7:s390x (2.5.0-2) ...
344s Selecting previously unselected package libraw23:s390x.
344s Preparing to unpack .../020-libraw23_0.21.2-2_s390x.deb ...
344s Unpacking libraw23:s390x (0.21.2-2) ...
344s Selecting previously unselected package libdeflate0:s390x.
344s Preparing to unpack .../021-libdeflate0_1.19-1_s390x.deb ...
344s Unpacking libdeflate0:s390x (1.19-1) ...
344s Selecting previously unselected package libwebp7:s390x.
344s Preparing to unpack .../022-libwebp7_1.3.2-0.4_s390x.deb ...
344s Unpacking libwebp7:s390x (1.3.2-0.4) ...
344s Selecting previously unselected package libtiff6:s390x.
344s Preparing to unpack .../023-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ...
344s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ...
344s Selecting previously unselected package libwebpdemux2:s390x.
344s Preparing to unpack .../024-libwebpdemux2_1.3.2-0.4_s390x.deb ...
344s Unpacking libwebpdemux2:s390x (1.3.2-0.4) ...
344s Selecting previously unselected package libwebpmux3:s390x.
344s Preparing to unpack .../025-libwebpmux3_1.3.2-0.4_s390x.deb ...
344s Unpacking libwebpmux3:s390x (1.3.2-0.4) ...
344s Selecting previously unselected package imagemagick-6-common.
344s Preparing to unpack .../026-imagemagick-6-common_8%3a6.9.12.98+dfsg1-5_all.deb ...
344s Unpacking imagemagick-6-common (8:6.9.12.98+dfsg1-5) ...
344s Selecting previously unselected package libmagickcore-6.q16-7:s390x.
344s Preparing to unpack .../027-libmagickcore-6.q16-7_8%3a6.9.12.98+dfsg1-5_s390x.deb ...
344s Unpacking libmagickcore-6.q16-7:s390x (8:6.9.12.98+dfsg1-5) ...
344s Selecting previously unselected package libmagickwand-6.q16-7:s390x.
344s Preparing to unpack .../028-libmagickwand-6.q16-7_8%3a6.9.12.98+dfsg1-5_s390x.deb ...
344s Unpacking libmagickwand-6.q16-7:s390x (8:6.9.12.98+dfsg1-5) ...
344s Selecting previously unselected package libgdk-pixbuf2.0-common.
344s Preparing to unpack .../029-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ...
344s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ...
344s Selecting previously unselected package libgdk-pixbuf-2.0-0:s390x.
344s Preparing to unpack .../030-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_s390x.deb ...
344s Unpacking libgdk-pixbuf-2.0-0:s390x (2.42.10+dfsg-3) ...
344s Selecting previously unselected package gtk-update-icon-cache.
344s Preparing to unpack .../031-gtk-update-icon-cache_3.24.40-2ubuntu1_s390x.deb ...
344s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ...
344s Selecting previously unselected package hicolor-icon-theme.
344s Preparing to unpack .../032-hicolor-icon-theme_0.17-2_all.deb ...
344s Unpacking hicolor-icon-theme (0.17-2) ...
344s Selecting previously unselected package humanity-icon-theme.
344s Preparing to unpack .../033-humanity-icon-theme_0.6.16_all.deb ...
344s Unpacking humanity-icon-theme (0.6.16) ...
345s Selecting previously unselected package ubuntu-mono.
345s Preparing to unpack .../034-ubuntu-mono_24.04-0ubuntu1_all.deb ...
345s Unpacking ubuntu-mono (24.04-0ubuntu1) ...
345s Selecting previously unselected package adwaita-icon-theme.
345s Preparing to unpack .../035-adwaita-icon-theme_46~rc-1_all.deb ...
345s Unpacking adwaita-icon-theme (46~rc-1) ...
345s Selecting previously unselected package at-spi2-common.
345s Preparing to unpack .../036-at-spi2-common_2.50.0-1_all.deb ...
345s Unpacking at-spi2-common (2.50.0-1) ...
345s Selecting previously unselected package m4.
345s Preparing to unpack .../037-m4_1.4.19-4_s390x.deb ...
345s Unpacking m4 (1.4.19-4) ...
345s Selecting previously unselected package autoconf.
345s Preparing to unpack .../038-autoconf_2.71-3_all.deb ...
345s Unpacking autoconf (2.71-3) ...
345s Selecting previously unselected package autotools-dev.
345s Preparing to unpack .../039-autotools-dev_20220109.1_all.deb ...
345s Unpacking autotools-dev (20220109.1) ...
345s Selecting previously unselected package automake.
345s Preparing to unpack .../040-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
345s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
345s Selecting previously unselected package libisl23:s390x.
345s Preparing to unpack .../041-libisl23_0.26-3_s390x.deb ...
345s Unpacking libisl23:s390x (0.26-3) ...
345s Selecting previously unselected package libmpc3:s390x.
345s Preparing to unpack .../042-libmpc3_1.3.1-1_s390x.deb ...
345s Unpacking libmpc3:s390x (1.3.1-1) ...
345s Selecting previously unselected package cpp-13-s390x-linux-gnu.
345s Preparing to unpack .../043-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
345s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
345s Selecting previously unselected package libdconf1:s390x.
345s Preparing to unpack .../044-libdconf1_0.40.0-4_s390x.deb ...
345s Unpacking libdconf1:s390x (0.40.0-4) ...
345s Selecting previously unselected package dconf-service.
345s Preparing to unpack .../045-dconf-service_0.40.0-4_s390x.deb ...
345s Unpacking dconf-service (0.40.0-4) ...
345s Selecting previously unselected package dconf-gsettings-backend:s390x.
345s Preparing to unpack .../046-dconf-gsettings-backend_0.40.0-4_s390x.deb ...
345s Unpacking dconf-gsettings-backend:s390x (0.40.0-4) ...
345s Selecting previously unselected package fontconfig.
345s Preparing to unpack .../047-fontconfig_2.15.0-1ubuntu1_s390x.deb ...
345s Unpacking fontconfig (2.15.0-1ubuntu1) ...
345s Selecting previously unselected package libcc1-0:s390x.
345s Preparing to unpack .../048-libcc1-0_14-20240303-1ubuntu1_s390x.deb ...
345s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ...
346s Selecting previously unselected package libitm1:s390x.
346s Preparing to unpack .../049-libitm1_14-20240303-1ubuntu1_s390x.deb ...
346s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ...
346s Selecting previously unselected package libatomic1:s390x.
346s Preparing to unpack .../050-libatomic1_14-20240303-1ubuntu1_s390x.deb ...
346s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ...
346s Selecting previously unselected package libasan8:s390x.
346s Preparing to unpack .../051-libasan8_14-20240303-1ubuntu1_s390x.deb ...
346s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ...
346s Selecting previously unselected package libubsan1:s390x.
346s Preparing to unpack .../052-libubsan1_14-20240303-1ubuntu1_s390x.deb ...
346s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ...
346s Selecting previously unselected package libgcc-13-dev:s390x.
346s Preparing to unpack .../053-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ...
346s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ...
346s Selecting previously unselected package gcc-13-s390x-linux-gnu.
346s Preparing to unpack .../054-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
346s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
346s Selecting previously unselected package gcc-13.
346s Preparing to unpack .../055-gcc-13_13.2.0-17ubuntu2_s390x.deb ...
346s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
346s Selecting previously unselected package libgfortran5:s390x.
346s Preparing to unpack .../056-libgfortran5_14-20240303-1ubuntu1_s390x.deb ...
346s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ...
346s Selecting previously unselected package libgfortran-13-dev:s390x.
346s Preparing to unpack .../057-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ...
346s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ...
346s Selecting previously unselected package libc-dev-bin.
346s Preparing to unpack .../058-libc-dev-bin_2.39-0ubuntu6_s390x.deb ...
346s Unpacking libc-dev-bin (2.39-0ubuntu6) ...
346s Selecting previously unselected package linux-libc-dev:s390x.
346s Preparing to unpack .../059-linux-libc-dev_6.8.0-11.11_s390x.deb ...
346s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ...
347s Selecting previously unselected package libcrypt-dev:s390x.
347s Preparing to unpack .../060-libcrypt-dev_1%3a4.4.36-4_s390x.deb ...
347s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ...
347s Selecting previously unselected package rpcsvc-proto.
347s Preparing to unpack .../061-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ...
347s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
347s Selecting previously unselected package libc6-dev:s390x.
347s Preparing to unpack .../062-libc6-dev_2.39-0ubuntu6_s390x.deb ...
347s Unpacking libc6-dev:s390x (2.39-0ubuntu6) ...
347s Selecting previously unselected package gfortran-13-s390x-linux-gnu.
347s Preparing to unpack .../063-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ...
347s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
347s Selecting previously unselected package gfortran-13.
347s Preparing to unpack .../064-gfortran-13_13.2.0-17ubuntu2_s390x.deb ...
347s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
347s Selecting previously unselected package aglfn.
347s Preparing to unpack .../065-aglfn_1.7+git20191031.4036a9c-2_all.deb ...
347s Unpacking aglfn (1.7+git20191031.4036a9c-2) ...
347s Selecting previously unselected package gnuplot-data.
347s Preparing to unpack .../066-gnuplot-data_5.4.4+dfsg1-2build1_all.deb ...
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347s Selecting previously unselected package libpixman-1-0:s390x.
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347s Selecting previously unselected package libxcb-render0:s390x.
347s Preparing to unpack .../068-libxcb-render0_1.15-1_s390x.deb ...
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347s Selecting previously unselected package libxcb-shm0:s390x.
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347s Selecting previously unselected package libxrender1:s390x.
347s Preparing to unpack .../070-libxrender1_1%3a0.9.10-1.1_s390x.deb ...
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347s Selecting previously unselected package libcairo2:s390x.
347s Preparing to unpack .../071-libcairo2_1.18.0-1_s390x.deb ...
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347s Selecting previously unselected package libxpm4:s390x.
347s Preparing to unpack .../072-libxpm4_1%3a3.5.17-1_s390x.deb ...
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347s Selecting previously unselected package libgd3:s390x.
347s Preparing to unpack .../073-libgd3_2.3.3-9ubuntu1_s390x.deb ...
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347s Selecting previously unselected package liblua5.4-0:s390x.
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347s Selecting previously unselected package libgraphite2-3:s390x.
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347s Selecting previously unselected package libharfbuzz0b:s390x.
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347s Selecting previously unselected package libthai-data.
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347s Selecting previously unselected package libdatrie1:s390x.
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347s Selecting previously unselected package libpango-1.0-0:s390x.
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347s Selecting previously unselected package libpangoft2-1.0-0:s390x.
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347s Selecting previously unselected package libpangocairo-1.0-0:s390x.
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347s Selecting previously unselected package libdouble-conversion3:s390x.
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347s Selecting previously unselected package libpcre2-16-0:s390x.
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347s Selecting previously unselected package libqt5core5a:s390x.
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347s Selecting previously unselected package libglvnd0:s390x.
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347s Selecting previously unselected package libwayland-server0:s390x.
347s Preparing to unpack .../087-libwayland-server0_1.22.0-2.1_s390x.deb ...
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347s Selecting previously unselected package libxcb-randr0:s390x.
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348s Selecting previously unselected package libgbm1:s390x.
348s Preparing to unpack .../089-libgbm1_24.0.1-1ubuntu1_s390x.deb ...
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348s Selecting previously unselected package libglapi-mesa:s390x.
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348s Selecting previously unselected package libwayland-client0:s390x.
348s Preparing to unpack .../091-libwayland-client0_1.22.0-2.1_s390x.deb ...
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348s Selecting previously unselected package libx11-xcb1:s390x.
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348s Selecting previously unselected package libxcb-dri2-0:s390x.
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348s Selecting previously unselected package libxcb-dri3-0:s390x.
348s Preparing to unpack .../094-libxcb-dri3-0_1.15-1_s390x.deb ...
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348s Selecting previously unselected package libxcb-present0:s390x.
348s Preparing to unpack .../095-libxcb-present0_1.15-1_s390x.deb ...
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348s Selecting previously unselected package libxcb-sync1:s390x.
348s Preparing to unpack .../096-libxcb-sync1_1.15-1_s390x.deb ...
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348s Selecting previously unselected package libxcb-xfixes0:s390x.
348s Preparing to unpack .../097-libxcb-xfixes0_1.15-1_s390x.deb ...
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348s Selecting previously unselected package libxshmfence1:s390x.
348s Preparing to unpack .../098-libxshmfence1_1.3-1build4_s390x.deb ...
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348s Selecting previously unselected package libegl-mesa0:s390x.
348s Preparing to unpack .../099-libegl-mesa0_24.0.1-1ubuntu1_s390x.deb ...
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348s Selecting previously unselected package libegl1:s390x.
348s Preparing to unpack .../100-libegl1_1.7.0-1_s390x.deb ...
348s Unpacking libegl1:s390x (1.7.0-1) ...
348s Selecting previously unselected package libxcb-glx0:s390x.
348s Preparing to unpack .../101-libxcb-glx0_1.15-1_s390x.deb ...
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348s Selecting previously unselected package libxfixes3:s390x.
348s Preparing to unpack .../102-libxfixes3_1%3a6.0.0-2_s390x.deb ...
348s Unpacking libxfixes3:s390x (1:6.0.0-2) ...
348s Selecting previously unselected package libxxf86vm1:s390x.
348s Preparing to unpack .../103-libxxf86vm1_1%3a1.1.4-1build3_s390x.deb ...
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348s Selecting previously unselected package libvulkan1:s390x.
348s Preparing to unpack .../104-libvulkan1_1.3.275.0-1_s390x.deb ...
348s Unpacking libvulkan1:s390x (1.3.275.0-1) ...
348s Selecting previously unselected package libdrm-amdgpu1:s390x.
348s Preparing to unpack .../105-libdrm-amdgpu1_2.4.120-2_s390x.deb ...
348s Unpacking libdrm-amdgpu1:s390x (2.4.120-2) ...
348s Selecting previously unselected package libdrm-nouveau2:s390x.
348s Preparing to unpack .../106-libdrm-nouveau2_2.4.120-2_s390x.deb ...
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348s Selecting previously unselected package libdrm-radeon1:s390x.
348s Preparing to unpack .../107-libdrm-radeon1_2.4.120-2_s390x.deb ...
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348s Selecting previously unselected package libllvm17:s390x.
348s Preparing to unpack .../108-libllvm17_1%3a17.0.6-5build1_s390x.deb ...
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349s Selecting previously unselected package libgl1-mesa-dri:s390x.
349s Preparing to unpack .../109-libgl1-mesa-dri_24.0.1-1ubuntu1_s390x.deb ...
349s Unpacking libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ...
349s Selecting previously unselected package libglx-mesa0:s390x.
349s Preparing to unpack .../110-libglx-mesa0_24.0.1-1ubuntu1_s390x.deb ...
349s Unpacking libglx-mesa0:s390x (24.0.1-1ubuntu1) ...
349s Selecting previously unselected package libglx0:s390x.
349s Preparing to unpack .../111-libglx0_1.7.0-1_s390x.deb ...
349s Unpacking libglx0:s390x (1.7.0-1) ...
349s Selecting previously unselected package libgl1:s390x.
349s Preparing to unpack .../112-libgl1_1.7.0-1_s390x.deb ...
349s Unpacking libgl1:s390x (1.7.0-1) ...
349s Selecting previously unselected package x11-common.
349s Preparing to unpack .../113-x11-common_1%3a7.7+23ubuntu2_all.deb ...
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349s Selecting previously unselected package libice6:s390x.
349s Preparing to unpack .../114-libice6_2%3a1.0.10-1build2_s390x.deb ...
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349s Selecting previously unselected package libmtdev1:s390x.
349s Preparing to unpack .../115-libmtdev1_1.1.6-1build4_s390x.deb ...
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349s Selecting previously unselected package libwacom-common.
349s Preparing to unpack .../116-libwacom-common_2.10.0-1_all.deb ...
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349s Selecting previously unselected package libwacom9:s390x.
349s Preparing to unpack .../117-libwacom9_2.10.0-1_s390x.deb ...
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349s Selecting previously unselected package libinput-bin.
349s Preparing to unpack .../118-libinput-bin_1.25.0-1_s390x.deb ...
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349s Selecting previously unselected package libinput10:s390x.
349s Preparing to unpack .../119-libinput10_1.25.0-1_s390x.deb ...
349s Unpacking libinput10:s390x (1.25.0-1) ...
349s Selecting previously unselected package libmd4c0:s390x.
349s Preparing to unpack .../120-libmd4c0_0.4.8-1_s390x.deb ...
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349s Selecting previously unselected package libqt5dbus5:s390x.
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349s Selecting previously unselected package libqt5network5:s390x.
349s Preparing to unpack .../122-libqt5network5_5.15.12+dfsg-3ubuntu1_s390x.deb ...
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349s Selecting previously unselected package libsm6:s390x.
349s Preparing to unpack .../123-libsm6_2%3a1.2.3-1build2_s390x.deb ...
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349s Selecting previously unselected package libxcb-icccm4:s390x.
349s Preparing to unpack .../124-libxcb-icccm4_0.4.1-1.1build2_s390x.deb ...
349s Unpacking libxcb-icccm4:s390x (0.4.1-1.1build2) ...
349s Selecting previously unselected package libxcb-util1:s390x.
349s Preparing to unpack .../125-libxcb-util1_0.4.0-1build2_s390x.deb ...
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349s Selecting previously unselected package libxcb-image0:s390x.
349s Preparing to unpack .../126-libxcb-image0_0.4.0-2_s390x.deb ...
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349s Selecting previously unselected package libxcb-keysyms1:s390x.
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349s Selecting previously unselected package libxcb-render-util0:s390x.
349s Preparing to unpack .../128-libxcb-render-util0_0.3.9-1build3_s390x.deb ...
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350s Selecting previously unselected package libxcb-shape0:s390x.
350s Preparing to unpack .../129-libxcb-shape0_1.15-1_s390x.deb ...
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350s Selecting previously unselected package libxcb-xinerama0:s390x.
350s Preparing to unpack .../130-libxcb-xinerama0_1.15-1_s390x.deb ...
350s Unpacking libxcb-xinerama0:s390x (1.15-1) ...
350s Selecting previously unselected package libxcb-xinput0:s390x.
350s Preparing to unpack .../131-libxcb-xinput0_1.15-1_s390x.deb ...
350s Unpacking libxcb-xinput0:s390x (1.15-1) ...
350s Selecting previously unselected package libxcb-xkb1:s390x.
350s Preparing to unpack .../132-libxcb-xkb1_1.15-1_s390x.deb ...
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350s Selecting previously unselected package libxkbcommon-x11-0:s390x.
350s Preparing to unpack .../133-libxkbcommon-x11-0_1.6.0-1_s390x.deb ...
350s Unpacking libxkbcommon-x11-0:s390x (1.6.0-1) ...
350s Selecting previously unselected package libqt5gui5:s390x.
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350s Selecting previously unselected package libavahi-common-data:s390x.
350s Preparing to unpack .../135-libavahi-common-data_0.8-13ubuntu2_s390x.deb ...
350s Unpacking libavahi-common-data:s390x (0.8-13ubuntu2) ...
350s Selecting previously unselected package libavahi-common3:s390x.
350s Preparing to unpack .../136-libavahi-common3_0.8-13ubuntu2_s390x.deb ...
350s Unpacking libavahi-common3:s390x (0.8-13ubuntu2) ...
350s Selecting previously unselected package libavahi-client3:s390x.
350s Preparing to unpack .../137-libavahi-client3_0.8-13ubuntu2_s390x.deb ...
350s Unpacking libavahi-client3:s390x (0.8-13ubuntu2) ...
350s Selecting previously unselected package libcups2:s390x.
350s Preparing to unpack .../138-libcups2_2.4.6-0ubuntu3_s390x.deb ...
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350s Selecting previously unselected package libqt5widgets5:s390x.
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350s Unpacking libqt5widgets5:s390x (5.15.12+dfsg-3ubuntu1) ...
350s Selecting previously unselected package libqt5printsupport5:s390x.
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350s Unpacking libqt5printsupport5:s390x (5.15.12+dfsg-3ubuntu1) ...
350s Selecting previously unselected package libqt5svg5:s390x.
350s Preparing to unpack .../141-libqt5svg5_5.15.12-1_s390x.deb ...
350s Unpacking libqt5svg5:s390x (5.15.12-1) ...
350s Selecting previously unselected package libpcre2-32-0:s390x.
350s Preparing to unpack .../142-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ...
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350s Selecting previously unselected package libwxbase3.2-1:s390x.
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350s Unpacking libwxbase3.2-1:s390x (3.2.4+dfsg-3) ...
350s Selecting previously unselected package libatk1.0-0:s390x.
350s Preparing to unpack .../144-libatk1.0-0_2.50.0-1_s390x.deb ...
350s Unpacking libatk1.0-0:s390x (2.50.0-1) ...
350s Selecting previously unselected package libxi6:s390x.
350s Preparing to unpack .../145-libxi6_2%3a1.8.1-1_s390x.deb ...
350s Unpacking libxi6:s390x (2:1.8.1-1) ...
350s Selecting previously unselected package libatspi2.0-0:s390x.
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350s Unpacking libatspi2.0-0:s390x (2.50.0-1) ...
350s Selecting previously unselected package libatk-bridge2.0-0:s390x.
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350s Unpacking libatk-bridge2.0-0:s390x (2.50.0-1) ...
350s Selecting previously unselected package libcairo-gobject2:s390x.
350s Preparing to unpack .../148-libcairo-gobject2_1.18.0-1_s390x.deb ...
350s Unpacking libcairo-gobject2:s390x (1.18.0-1) ...
350s Selecting previously unselected package libcolord2:s390x.
350s Preparing to unpack .../149-libcolord2_1.4.7-1_s390x.deb ...
350s Unpacking libcolord2:s390x (1.4.7-1) ...
350s Selecting previously unselected package libepoxy0:s390x.
350s Preparing to unpack .../150-libepoxy0_1.5.10-1_s390x.deb ...
350s Unpacking libepoxy0:s390x (1.5.10-1) ...
350s Selecting previously unselected package libwayland-cursor0:s390x.
350s Preparing to unpack .../151-libwayland-cursor0_1.22.0-2.1_s390x.deb ...
350s Unpacking libwayland-cursor0:s390x (1.22.0-2.1) ...
350s Selecting previously unselected package libwayland-egl1:s390x.
350s Preparing to unpack .../152-libwayland-egl1_1.22.0-2.1_s390x.deb ...
350s Unpacking libwayland-egl1:s390x (1.22.0-2.1) ...
350s Selecting previously unselected package libxcomposite1:s390x.
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350s Selecting previously unselected package libxcursor1:s390x.
350s Preparing to unpack .../154-libxcursor1_1%3a1.2.1-1_s390x.deb ...
350s Unpacking libxcursor1:s390x (1:1.2.1-1) ...
350s Selecting previously unselected package libxdamage1:s390x.
350s Preparing to unpack .../155-libxdamage1_1%3a1.1.6-1_s390x.deb ...
350s Unpacking libxdamage1:s390x (1:1.1.6-1) ...
350s Selecting previously unselected package libxinerama1:s390x.
350s Preparing to unpack .../156-libxinerama1_2%3a1.1.4-3_s390x.deb ...
350s Unpacking libxinerama1:s390x (2:1.1.4-3) ...
350s Selecting previously unselected package libxrandr2:s390x.
350s Preparing to unpack .../157-libxrandr2_2%3a1.5.2-2_s390x.deb ...
350s Unpacking libxrandr2:s390x (2:1.5.2-2) ...
350s Selecting previously unselected package libgtk-3-common.
350s Preparing to unpack .../158-libgtk-3-common_3.24.40-2ubuntu1_all.deb ...
350s Unpacking libgtk-3-common (3.24.40-2ubuntu1) ...
350s Selecting previously unselected package libgtk-3-0:s390x.
350s Preparing to unpack .../159-libgtk-3-0_3.24.40-2ubuntu1_s390x.deb ...
350s Unpacking libgtk-3-0:s390x (3.24.40-2ubuntu1) ...
350s Selecting previously unselected package libnotify4:s390x.
350s Preparing to unpack .../160-libnotify4_0.8.3-1_s390x.deb ...
350s Unpacking libnotify4:s390x (0.8.3-1) ...
350s Selecting previously unselected package libxtst6:s390x.
350s Preparing to unpack .../161-libxtst6_2%3a1.2.3-1.1_s390x.deb ...
350s Unpacking libxtst6:s390x (2:1.2.3-1.1) ...
350s Selecting previously unselected package libwxgtk3.2-1:s390x.
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350s Unpacking libwxgtk3.2-1:s390x (3.2.4+dfsg-3) ...
351s Selecting previously unselected package gnuplot-qt.
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351s Unpacking gnuplot-qt (5.4.4+dfsg1-2build1) ...
351s Selecting previously unselected package gnuplot.
351s Preparing to unpack .../164-gnuplot_5.4.4+dfsg1-2build1_all.deb ...
351s Unpacking gnuplot (5.4.4+dfsg1-2build1) ...
351s Selecting previously unselected package icu-devtools.
351s Preparing to unpack .../165-icu-devtools_74.2-1ubuntu1_s390x.deb ...
351s Unpacking icu-devtools (74.2-1ubuntu1) ...
351s Selecting previously unselected package imagemagick-6.q16.
351s Preparing to unpack .../166-imagemagick-6.q16_8%3a6.9.12.98+dfsg1-5_s390x.deb ...
351s Unpacking imagemagick-6.q16 (8:6.9.12.98+dfsg1-5) ...
351s Selecting previously unselected package imagemagick.
351s Preparing to unpack .../167-imagemagick_8%3a6.9.12.98+dfsg1-5_s390x.deb ...
351s Unpacking imagemagick (8:6.9.12.98+dfsg1-5) ...
351s Selecting previously unselected package libio-string-perl.
351s Preparing to unpack .../168-libio-string-perl_1.08-4_all.deb ...
351s Unpacking libio-string-perl (1.08-4) ...
351s Selecting previously unselected package libdata-stag-perl.
351s Preparing to unpack .../169-libdata-stag-perl_0.14-3_all.deb ...
351s Unpacking libdata-stag-perl (0.14-3) ...
351s Selecting previously unselected package libbio-perl-perl.
351s Preparing to unpack .../170-libbio-perl-perl_1.7.8-1_all.deb ...
351s Unpacking libbio-perl-perl (1.7.8-1) ...
351s Selecting previously unselected package libblas3:s390x.
351s Preparing to unpack .../171-libblas3_3.12.0-3_s390x.deb ...
351s Unpacking libblas3:s390x (3.12.0-3) ...
351s Selecting previously unselected package libstdc++-13-dev:s390x.
351s Preparing to unpack .../172-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ...
351s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ...
351s Selecting previously unselected package libboost1.83-dev:s390x.
351s Preparing to unpack .../173-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ...
351s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ...
354s Selecting previously unselected package libboost-atomic1.83.0:s390x.
354s Preparing to unpack .../174-libboost-atomic1.83.0_1.83.0-2ubuntu1_s390x.deb ...
354s Unpacking libboost-atomic1.83.0:s390x (1.83.0-2ubuntu1) ...
354s Selecting previously unselected package libboost-atomic1.83-dev:s390x.
354s Preparing to unpack .../175-libboost-atomic1.83-dev_1.83.0-2ubuntu1_s390x.deb ...
354s Unpacking libboost-atomic1.83-dev:s390x (1.83.0-2ubuntu1) ...
354s Selecting previously unselected package libboost-filesystem1.83.0:s390x.
354s Preparing to unpack .../176-libboost-filesystem1.83.0_1.83.0-2ubuntu1_s390x.deb ...
354s Unpacking libboost-filesystem1.83.0:s390x (1.83.0-2ubuntu1) ...
354s Selecting previously unselected package libboost-system1.83.0:s390x.
354s Preparing to unpack .../177-libboost-system1.83.0_1.83.0-2ubuntu1_s390x.deb ...
354s Unpacking libboost-system1.83.0:s390x (1.83.0-2ubuntu1) ...
354s Selecting previously unselected package libboost-system1.83-dev:s390x.
354s Preparing to unpack .../178-libboost-system1.83-dev_1.83.0-2ubuntu1_s390x.deb ...
354s Unpacking libboost-system1.83-dev:s390x (1.83.0-2ubuntu1) ...
354s Selecting previously unselected package libboost-filesystem1.83-dev:s390x.
354s Preparing to unpack .../179-libboost-filesystem1.83-dev_1.83.0-2ubuntu1_s390x.deb ...
354s Unpacking libboost-filesystem1.83-dev:s390x (1.83.0-2ubuntu1) ...
354s Selecting previously unselected package libboost-filesystem-dev:s390x.
354s Preparing to unpack .../180-libboost-filesystem-dev_1.83.0.1ubuntu2_s390x.deb ...
354s Unpacking libboost-filesystem-dev:s390x (1.83.0.1ubuntu2) ...
354s Selecting previously unselected package libboost-regex1.83.0:s390x.
354s Preparing to unpack .../181-libboost-regex1.83.0_1.83.0-2ubuntu1_s390x.deb ...
354s Unpacking libboost-regex1.83.0:s390x (1.83.0-2ubuntu1) ...
354s Selecting previously unselected package libicu-dev:s390x.
354s Preparing to unpack .../182-libicu-dev_74.2-1ubuntu1_s390x.deb ...
354s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ...
354s Selecting previously unselected package libboost-regex1.83-dev:s390x.
354s Preparing to unpack .../183-libboost-regex1.83-dev_1.83.0-2ubuntu1_s390x.deb ...
354s Unpacking libboost-regex1.83-dev:s390x (1.83.0-2ubuntu1) ...
354s Selecting previously unselected package libboost-iostreams1.83.0:s390x.
354s Preparing to unpack .../184-libboost-iostreams1.83.0_1.83.0-2ubuntu1_s390x.deb ...
354s Unpacking libboost-iostreams1.83.0:s390x (1.83.0-2ubuntu1) ...
354s Selecting previously unselected package libboost-iostreams1.83-dev:s390x.
354s Preparing to unpack .../185-libboost-iostreams1.83-dev_1.83.0-2ubuntu1_s390x.deb ...
354s Unpacking libboost-iostreams1.83-dev:s390x (1.83.0-2ubuntu1) ...
354s Selecting previously unselected package libboost-iostreams-dev:s390x.
355s Preparing to unpack .../186-libboost-iostreams-dev_1.83.0.1ubuntu2_s390x.deb ...
355s Unpacking libboost-iostreams-dev:s390x (1.83.0.1ubuntu2) ...
355s Selecting previously unselected package libboost-regex-dev:s390x.
355s Preparing to unpack .../187-libboost-regex-dev_1.83.0.1ubuntu2_s390x.deb ...
355s Unpacking libboost-regex-dev:s390x (1.83.0.1ubuntu2) ...
355s Selecting previously unselected package libcrypto++8t64:s390x.
355s Preparing to unpack .../188-libcrypto++8t64_8.9.0-1.1_s390x.deb ...
355s Unpacking libcrypto++8t64:s390x (8.9.0-1.1) ...
355s Selecting previously unselected package libcrypto++-dev:s390x.
355s Preparing to unpack .../189-libcrypto++-dev_8.9.0-1.1_s390x.deb ...
355s Unpacking libcrypto++-dev:s390x (8.9.0-1.1) ...
355s Selecting previously unselected package libevent-2.1-7:s390x.
355s Preparing to unpack .../190-libevent-2.1-7_2.1.12-stable-9_s390x.deb ...
355s Unpacking libevent-2.1-7:s390x (2.1.12-stable-9) ...
355s Selecting previously unselected package libevent-extra-2.1-7:s390x.
355s Preparing to unpack .../191-libevent-extra-2.1-7_2.1.12-stable-9_s390x.deb ...
355s Unpacking libevent-extra-2.1-7:s390x (2.1.12-stable-9) ...
355s Selecting previously unselected package libevent-pthreads-2.1-7:s390x.
355s Preparing to unpack .../192-libevent-pthreads-2.1-7_2.1.12-stable-9_s390x.deb ...
355s Unpacking libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ...
355s Selecting previously unselected package libevent-openssl-2.1-7:s390x.
355s Preparing to unpack .../193-libevent-openssl-2.1-7_2.1.12-stable-9_s390x.deb ...
355s Unpacking libevent-openssl-2.1-7:s390x (2.1.12-stable-9) ...
355s Selecting previously unselected package libevent-dev.
355s Preparing to unpack .../194-libevent-dev_2.1.12-stable-9_s390x.deb ...
355s Unpacking libevent-dev (2.1.12-stable-9) ...
355s Selecting previously unselected package librdmacm1t64:s390x.
355s Preparing to unpack .../195-librdmacm1t64_50.0-2_s390x.deb ...
355s Unpacking librdmacm1t64:s390x (50.0-2) ...
355s Selecting previously unselected package libfabric1:s390x.
355s Preparing to unpack .../196-libfabric1_1.17.0-3build1_s390x.deb ...
355s Unpacking libfabric1:s390x (1.17.0-3build1) ...
355s Selecting previously unselected package libhwloc15:s390x.
355s Preparing to unpack .../197-libhwloc15_2.10.0-1_s390x.deb ...
355s Unpacking libhwloc15:s390x (2.10.0-1) ...
355s Selecting previously unselected package libjs-jquery.
355s Preparing to unpack .../198-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
355s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
355s Selecting previously unselected package libjs-jquery-ui.
355s Preparing to unpack .../199-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
355s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
355s Selecting previously unselected package liblapack3:s390x.
355s Preparing to unpack .../200-liblapack3_3.12.0-3_s390x.deb ...
355s Unpacking liblapack3:s390x (3.12.0-3) ...
355s Selecting previously unselected package libltdl-dev:s390x.
355s Preparing to unpack .../201-libltdl-dev_2.4.7-7_s390x.deb ...
355s Unpacking libltdl-dev:s390x (2.4.7-7) ...
355s Selecting previously unselected package libnl-3-dev:s390x.
355s Preparing to unpack .../202-libnl-3-dev_3.7.0-0.3_s390x.deb ...
355s Unpacking libnl-3-dev:s390x (3.7.0-0.3) ...
355s Selecting previously unselected package libnl-route-3-dev:s390x.
355s Preparing to unpack .../203-libnl-route-3-dev_3.7.0-0.3_s390x.deb ...
355s Unpacking libnl-route-3-dev:s390x (3.7.0-0.3) ...
355s Selecting previously unselected package libmunge2:s390x.
355s Preparing to unpack .../204-libmunge2_0.5.15-3ubuntu1_s390x.deb ...
355s Unpacking libmunge2:s390x (0.5.15-3ubuntu1) ...
355s Selecting previously unselected package libpciaccess0:s390x.
355s Preparing to unpack .../205-libpciaccess0_0.17-3_s390x.deb ...
355s Unpacking libpciaccess0:s390x (0.17-3) ...
355s Selecting previously unselected package libxnvctrl0:s390x.
355s Preparing to unpack .../206-libxnvctrl0_510.47.03-0ubuntu1_s390x.deb ...
355s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu1) ...
355s Selecting previously unselected package ocl-icd-libopencl1:s390x.
355s Preparing to unpack .../207-ocl-icd-libopencl1_2.3.2-1_s390x.deb ...
355s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1) ...
355s Selecting previously unselected package libhwloc-plugins:s390x.
355s Preparing to unpack .../208-libhwloc-plugins_2.10.0-1_s390x.deb ...
355s Unpacking libhwloc-plugins:s390x (2.10.0-1) ...
355s Selecting previously unselected package libpmix2:s390x.
355s Preparing to unpack .../209-libpmix2_5.0.1-4_s390x.deb ...
355s Unpacking libpmix2:s390x (5.0.1-4) ...
355s Selecting previously unselected package libopenmpi3:s390x.
355s Preparing to unpack .../210-libopenmpi3_4.1.6-5ubuntu1_s390x.deb ...
355s Unpacking libopenmpi3:s390x (4.1.6-5ubuntu1) ...
355s Selecting previously unselected package libpaper1:s390x.
355s Preparing to unpack .../211-libpaper1_1.1.29_s390x.deb ...
355s Unpacking libpaper1:s390x (1.1.29) ...
355s Selecting previously unselected package libpaper-utils.
355s Preparing to unpack .../212-libpaper-utils_1.1.29_s390x.deb ...
355s Unpacking libpaper-utils (1.1.29) ...
355s Selecting previously unselected package libnuma-dev:s390x.
355s Preparing to unpack .../213-libnuma-dev_2.0.18-1_s390x.deb ...
355s Unpacking libnuma-dev:s390x (2.0.18-1) ...
355s Selecting previously unselected package libhwloc-dev:s390x.
355s Preparing to unpack .../214-libhwloc-dev_2.10.0-1_s390x.deb ...
355s Unpacking libhwloc-dev:s390x (2.10.0-1) ...
356s Selecting previously unselected package zlib1g-dev:s390x.
356s Preparing to unpack .../215-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ...
356s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ...
356s Selecting previously unselected package libpmix-dev:s390x.
356s Preparing to unpack .../216-libpmix-dev_5.0.1-4_s390x.deb ...
356s Unpacking libpmix-dev:s390x (5.0.1-4) ...
356s Selecting previously unselected package libpstreams-dev.
356s Preparing to unpack .../217-libpstreams-dev_1.0.3-1_all.deb ...
356s Unpacking libpstreams-dev (1.0.3-1) ...
356s Selecting previously unselected package libtcl8.6:s390x.
356s Preparing to unpack .../218-libtcl8.6_8.6.13+dfsg-2_s390x.deb ...
356s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ...
356s Selecting previously unselected package libterm-readkey-perl.
356s Preparing to unpack .../219-libterm-readkey-perl_2.38-2build2_s390x.deb ...
356s Unpacking libterm-readkey-perl (2.38-2build2) ...
356s Selecting previously unselected package libtext-wrapper-perl.
356s Preparing to unpack .../220-libtext-wrapper-perl_1.05-4_all.deb ...
356s Unpacking libtext-wrapper-perl (1.05-4) ...
356s Selecting previously unselected package libxft2:s390x.
356s Preparing to unpack .../221-libxft2_2.3.6-1_s390x.deb ...
356s Unpacking libxft2:s390x (2.3.6-1) ...
356s Selecting previously unselected package libxss1:s390x.
356s Preparing to unpack .../222-libxss1_1%3a1.2.3-1build2_s390x.deb ...
356s Unpacking libxss1:s390x (1:1.2.3-1build2) ...
356s Selecting previously unselected package libtk8.6:s390x.
356s Preparing to unpack .../223-libtk8.6_8.6.14-1_s390x.deb ...
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356s Selecting previously unselected package libxt6:s390x.
356s Preparing to unpack .../224-libxt6_1%3a1.2.1-1.1_s390x.deb ...
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356s Selecting previously unselected package zip.
356s Preparing to unpack .../225-zip_3.0-13_s390x.deb ...
356s Unpacking zip (3.0-13) ...
356s Selecting previously unselected package unzip.
356s Preparing to unpack .../226-unzip_6.0-28ubuntu3_s390x.deb ...
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356s Selecting previously unselected package xdg-utils.
356s Preparing to unpack .../227-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
356s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
356s Selecting previously unselected package r-base-core.
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356s Unpacking r-base-core (4.3.2-1build1) ...
356s Selecting previously unselected package r-cran-gtools.
356s Preparing to unpack .../229-r-cran-gtools_3.9.5-1_s390x.deb ...
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357s Selecting previously unselected package r-cran-bitops.
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357s Selecting previously unselected package r-cran-catools.
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357s Selecting previously unselected package r-cran-kernsmooth.
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357s Selecting previously unselected package r-cran-gdata.
357s Preparing to unpack .../234-r-cran-gdata_3.0.0-1_all.deb ...
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357s Selecting previously unselected package r-cran-gplots.
357s Preparing to unpack .../235-r-cran-gplots_3.1.3.1-1_all.deb ...
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357s Selecting previously unselected package r-cran-rocr.
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357s Unpacking r-cran-rocr (1.0-11-2build1) ...
357s Selecting previously unselected package murasaki-common.
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357s Selecting previously unselected package murasaki.
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357s Unpacking murasaki (1.68.6-13build4) ...
357s Selecting previously unselected package murasaki-mpi.
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357s Selecting previously unselected package openmpi-common.
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357s Selecting previously unselected package libibverbs-dev:s390x.
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357s Selecting previously unselected package libopenmpi-dev:s390x.
357s Preparing to unpack .../243-libopenmpi-dev_4.1.6-5ubuntu1_s390x.deb ...
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357s Selecting previously unselected package autopkgtest-satdep.
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357s Unpacking autopkgtest-satdep (0) ...
357s Setting up libgraphite2-3:s390x (1.3.14-2) ...
357s Setting up libxcb-dri3-0:s390x (1.15-1) ...
357s Setting up liblcms2-2:s390x (2.14-2) ...
357s Setting up libpixman-1-0:s390x (0.42.2-1) ...
357s Setting up libsharpyuv0:s390x (1.3.2-0.4) ...
357s Setting up libwayland-server0:s390x (1.22.0-2.1) ...
357s Setting up libpaper1:s390x (1.1.29) ...
357s 
357s Creating config file /etc/papersize with new version
357s Setting up libx11-xcb1:s390x (2:1.8.7-1) ...
357s Setting up libpciaccess0:s390x (0.17-3) ...
357s Setting up imagemagick-6-common (8:6.9.12.98+dfsg1-5) ...
357s Setting up libdouble-conversion3:s390x (3.3.0-1) ...
357s Setting up libevent-extra-2.1-7:s390x (2.1.12-stable-9) ...
357s Setting up libdrm-nouveau2:s390x (2.4.120-2) ...
357s Setting up libxdamage1:s390x (1:1.1.6-1) ...
357s Setting up libxcb-xfixes0:s390x (1.15-1) ...
357s Setting up libxpm4:s390x (1:3.5.17-1) ...
357s Setting up hicolor-icon-theme (0.17-2) ...
357s Setting up libxi6:s390x (2:1.8.1-1) ...
357s Setting up libxcb-xinput0:s390x (1.15-1) ...
357s Setting up libxrender1:s390x (1:0.9.10-1.1) ...
357s Setting up libdatrie1:s390x (0.2.13-3) ...
357s Setting up libxcb-render0:s390x (1.15-1) ...
357s Setting up libdrm-radeon1:s390x (2.4.120-2) ...
357s Setting up libglvnd0:s390x (1.7.0-1) ...
357s Setting up libboost-regex1.83.0:s390x (1.83.0-2ubuntu1) ...
357s Setting up libxcb-glx0:s390x (1.15-1) ...
357s Setting up unzip (6.0-28ubuntu3) ...
357s Setting up libboost-system1.83.0:s390x (1.83.0-2ubuntu1) ...
357s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ...
357s Setting up libxcb-keysyms1:s390x (0.4.0-1build3) ...
357s Setting up libxcb-shape0:s390x (1.15-1) ...
357s Setting up x11-common (1:7.7+23ubuntu2) ...
358s Setting up libdeflate0:s390x (1.19-1) ...
358s Setting up linux-libc-dev:s390x (6.8.0-11.11) ...
358s Setting up libevent-openssl-2.1-7:s390x (2.1.12-stable-9) ...
358s Setting up m4 (1.4.19-4) ...
358s Setting up libxcb-render-util0:s390x (0.3.9-1build3) ...
358s Setting up libxcb-shm0:s390x (1.15-1) ...
358s Setting up libxcb-icccm4:s390x (0.4.1-1.1build2) ...
358s Setting up libpaper-utils (1.1.29) ...
358s Setting up libatspi2.0-0:s390x (2.50.0-1) ...
358s Setting up libtext-wrapper-perl (1.05-4) ...
358s Setting up libboost-filesystem1.83.0:s390x (1.83.0-2ubuntu1) ...
358s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ...
358s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ...
358s Setting up libpcre2-16-0:s390x (10.42-4ubuntu1) ...
358s Setting up libcolord2:s390x (1.4.7-1) ...
358s Setting up libxcb-util1:s390x (0.4.0-1build2) ...
358s Setting up libxxf86vm1:s390x (1:1.1.4-1build3) ...
358s Setting up libxcb-xkb1:s390x (1.15-1) ...
358s Setting up libxcb-image0:s390x (0.4.0-2) ...
358s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu1) ...
358s Setting up libboost-atomic1.83.0:s390x (1.83.0-2ubuntu1) ...
358s Setting up libxcb-present0:s390x (1.15-1) ...
358s Setting up libdconf1:s390x (0.40.0-4) ...
358s Setting up libio-string-perl (1.08-4) ...
358s Setting up zip (3.0-13) ...
358s Setting up autotools-dev (20220109.1) ...
358s Setting up libpcre2-32-0:s390x (10.42-4ubuntu1) ...
358s Setting up libblas3:s390x (3.12.0-3) ...
358s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
358s Setting up libxcb-xinerama0:s390x (1.15-1) ...
358s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
358s Setting up libmunge2:s390x (0.5.15-3ubuntu1) ...
358s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ...
358s Setting up libepoxy0:s390x (1.5.10-1) ...
358s Setting up libxfixes3:s390x (1:6.0.0-2) ...
358s Setting up libxcb-sync1:s390x (1.15-1) ...
358s Setting up libboost-iostreams1.83.0:s390x (1.83.0-2ubuntu1) ...
358s Setting up aglfn (1.7+git20191031.4036a9c-2) ...
358s Setting up libavahi-common-data:s390x (0.8-13ubuntu2) ...
358s Setting up libxinerama1:s390x (2:1.1.4-3) ...
358s Setting up libxkbcommon-x11-0:s390x (1.6.0-1) ...
358s Setting up fonts-dejavu-mono (2.37-8) ...
358s Setting up libhwloc15:s390x (2.10.0-1) ...
358s Setting up libmpc3:s390x (1.3.1-1) ...
358s Setting up libcrypto++8t64:s390x (8.9.0-1.1) ...
358s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ...
358s Setting up libevent-2.1-7:s390x (2.1.12-stable-9) ...
358s Setting up libxrandr2:s390x (2:1.5.2-2) ...
358s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ...
358s Setting up icu-devtools (74.2-1ubuntu1) ...
358s Setting up fonts-dejavu-core (2.37-8) ...
358s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ...
358s Setting up libqt5core5a:s390x (5.15.12+dfsg-3ubuntu1) ...
358s Setting up libltdl7:s390x (2.4.7-7) ...
358s Setting up libfftw3-double3:s390x (3.3.10-1ubuntu1) ...
358s Setting up libglapi-mesa:s390x (24.0.1-1ubuntu1) ...
358s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ...
358s Setting up libmtdev1:s390x (1.1.6-1build4) ...
358s Setting up libvulkan1:s390x (1.3.275.0-1) ...
358s Setting up autoconf (2.71-3) ...
358s Setting up libwebp7:s390x (1.3.2-0.4) ...
358s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ...
358s Setting up libxcb-dri2-0:s390x (1.15-1) ...
358s Setting up libdata-stag-perl (0.14-3) ...
358s Setting up libdav1d7:s390x (1.4.0-1) ...
358s Setting up libnl-3-dev:s390x (3.7.0-0.3) ...
358s Setting up liblqr-1-0:s390x (0.4.2-2.1) ...
358s Setting up ocl-icd-libopencl1:s390x (2.3.2-1) ...
358s Setting up libxshmfence1:s390x (1.3-1build4) ...
358s Setting up at-spi2-common (2.50.0-1) ...
358s Setting up libqt5dbus5:s390x (5.15.12+dfsg-3ubuntu1) ...
358s Setting up libcrypt-dev:s390x (1:4.4.36-4) ...
358s Setting up libxcb-randr0:s390x (1.15-1) ...
358s Setting up libasan8:s390x (14-20240303-1ubuntu1) ...
358s Setting up openmpi-common (4.1.6-5ubuntu1) ...
358s Setting up libmd4c0:s390x (0.4.8-1) ...
358s Setting up librdmacm1t64:s390x (50.0-2) ...
358s Setting up liblua5.4-0:s390x (5.4.6-3) ...
358s Setting up libopenjp2-7:s390x (2.5.0-2) ...
358s Setting up libharfbuzz0b:s390x (8.3.0-2) ...
358s Setting up libthai-data (0.1.29-2) ...
358s Setting up libatk1.0-0:s390x (2.50.0-1) ...
358s Setting up libwayland-egl1:s390x (1.22.0-2.1) ...
358s Setting up libbio-perl-perl (1.7.8-1) ...
358s Setting up libxss1:s390x (1:1.2.3-1build2) ...
358s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
358s Setting up libterm-readkey-perl (2.38-2build2) ...
358s Setting up libisl23:s390x (0.26-3) ...
358s Setting up libde265-0:s390x (1.0.15-1) ...
358s Setting up libc-dev-bin (2.39-0ubuntu6) ...
358s Setting up libwebpmux3:s390x (1.3.2-0.4) ...
358s Setting up libllvm17:s390x (1:17.0.6-5build1) ...
358s Setting up libxcomposite1:s390x (1:0.4.5-1build2) ...
358s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
358s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
358s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ...
358s Setting up libitm1:s390x (14-20240303-1ubuntu1) ...
358s Setting up libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ...
358s Setting up libdrm-amdgpu1:s390x (2.4.120-2) ...
358s Setting up libwacom-common (2.10.0-1) ...
358s Setting up libwayland-client0:s390x (1.22.0-2.1) ...
358s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
358s Setting up automake (1:1.16.5-1.3ubuntu1) ...
358s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
358s Setting up libfabric1:s390x (1.17.0-3build1) ...
358s Setting up gnuplot-data (5.4.4+dfsg1-2build1) ...
358s Setting up libice6:s390x (2:1.0.10-1build2) ...
358s Setting up liblapack3:s390x (3.12.0-3) ...
358s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
358s Setting up libgbm1:s390x (24.0.1-1ubuntu1) ...
358s Setting up libwacom9:s390x (2.10.0-1) ...
358s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
358s Setting up libxtst6:s390x (2:1.2.3-1.1) ...
358s Setting up libwebpdemux2:s390x (1.3.2-0.4) ...
358s Setting up libxcursor1:s390x (1:1.2.1-1) ...
358s Setting up libcrypto++-dev:s390x (8.9.0-1.1) ...
358s Setting up libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ...
358s Setting up libavahi-common3:s390x (0.8-13ubuntu2) ...
358s Setting up dconf-service (0.40.0-4) ...
358s Setting up libhwloc-plugins:s390x (2.10.0-1) ...
358s Setting up libwxbase3.2-1:s390x (3.2.4+dfsg-3) ...
358s Setting up libqt5network5:s390x (5.15.12+dfsg-3ubuntu1) ...
358s Setting up libinput-bin (1.25.0-1) ...
358s Setting up libatk-bridge2.0-0:s390x (2.50.0-1) ...
358s Setting up libnl-route-3-dev:s390x (3.7.0-0.3) ...
358s Setting up libltdl-dev:s390x (2.4.7-7) ...
358s Setting up libthai0:s390x (0.1.29-2) ...
358s Setting up libegl-mesa0:s390x (24.0.1-1ubuntu1) ...
358s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
358s Setting up cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
358s Setting up libevent-dev (2.1.12-stable-9) ...
358s Setting up libpstreams-dev (1.0.3-1) ...
358s Setting up libgcc-13-dev:s390x (13.2.0-17ubuntu2) ...
358s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ...
358s Setting up libwayland-cursor0:s390x (1.22.0-2.1) ...
358s Setting up libegl1:s390x (1.7.0-1) ...
358s Setting up libc6-dev:s390x (2.39-0ubuntu6) ...
358s Setting up libgdk-pixbuf-2.0-0:s390x (2.42.10+dfsg-3) ...
358s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ...
358s Setting up libraw23:s390x (0.21.2-2) ...
358s Setting up libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ...
358s Setting up libsm6:s390x (2:1.2.3-1build2) ...
358s Setting up libicu-dev:s390x (74.2-1ubuntu1) ...
358s Setting up libavahi-client3:s390x (0.8-13ubuntu2) ...
358s Setting up libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ...
358s Setting up libinput10:s390x (1.25.0-1) ...
358s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ...
358s Setting up fontconfig (2.15.0-1ubuntu1) ...
360s Regenerating fonts cache... done.
360s Setting up libxft2:s390x (2.3.6-1) ...
360s Setting up libboost1.83-dev:s390x (1.83.0-2ubuntu1) ...
360s Setting up libglx-mesa0:s390x (24.0.1-1ubuntu1) ...
360s Setting up libglx0:s390x (1.7.0-1) ...
360s Setting up dconf-gsettings-backend:s390x (0.40.0-4) ...
360s Setting up libpmix2:s390x (5.0.1-4) ...
360s Setting up libopenmpi3:s390x (4.1.6-5ubuntu1) ...
360s Setting up libtk8.6:s390x (8.6.14-1) ...
360s Setting up libpango-1.0-0:s390x (1.51.0+ds-4) ...
360s Setting up libibverbs-dev:s390x (50.0-2) ...
360s Setting up libcairo2:s390x (1.18.0-1) ...
360s Setting up libnuma-dev:s390x (2.0.18-1) ...
360s Setting up libgl1:s390x (1.7.0-1) ...
360s Setting up gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
360s Setting up libnotify4:s390x (0.8.3-1) ...
360s Setting up libgd3:s390x (2.3.3-9ubuntu1) ...
360s Setting up gcc-13 (13.2.0-17ubuntu2) ...
360s Setting up libboost-regex1.83-dev:s390x (1.83.0-2ubuntu1) ...
360s Setting up libxt6:s390x (1:1.2.1-1.1) ...
360s Setting up libboost-atomic1.83-dev:s390x (1.83.0-2ubuntu1) ...
360s Setting up libcups2:s390x (2.4.6-0ubuntu3) ...
360s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ...
360s Setting up gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ...
360s Setting up libcairo-gobject2:s390x (1.18.0-1) ...
360s Setting up libhwloc-dev:s390x (2.10.0-1) ...
360s Setting up libboost-system1.83-dev:s390x (1.83.0-2ubuntu1) ...
360s Setting up libpangoft2-1.0-0:s390x (1.51.0+ds-4) ...
360s Setting up libboost-regex-dev:s390x (1.83.0.1ubuntu2) ...
360s Setting up libpmix-dev:s390x (5.0.1-4) ...
360s Setting up openmpi-bin (4.1.6-5ubuntu1) ...
360s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
360s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
360s Setting up libgtk-3-common (3.24.40-2ubuntu1) ...
360s Setting up libpangocairo-1.0-0:s390x (1.51.0+ds-4) ...
360s Setting up libboost-iostreams1.83-dev:s390x (1.83.0-2ubuntu1) ...
360s Setting up libqt5gui5:s390x (5.15.12+dfsg-3ubuntu1) ...
360s Setting up libqt5widgets5:s390x (5.15.12+dfsg-3ubuntu1) ...
360s Setting up libboost-filesystem1.83-dev:s390x (1.83.0-2ubuntu1) ...
360s Setting up libboost-iostreams-dev:s390x (1.83.0.1ubuntu2) ...
360s Setting up libqt5printsupport5:s390x (5.15.12+dfsg-3ubuntu1) ...
360s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
360s Setting up r-base-core (4.3.2-1build1) ...
360s 
360s Creating config file /etc/R/Renviron with new version
360s Setting up libopenmpi-dev:s390x (4.1.6-5ubuntu1) ...
360s update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode
360s Setting up libboost-filesystem-dev:s390x (1.83.0.1ubuntu2) ...
360s Setting up libqt5svg5:s390x (5.15.12-1) ...
360s Setting up r-cran-mass (7.3-60.0.1-1) ...
360s Setting up r-cran-gtools (3.9.5-1) ...
360s Setting up r-cran-bitops (1.0-7-1) ...
360s Setting up r-cran-kernsmooth (2.23-22-1) ...
360s Setting up r-cran-catools (1.18.2-1) ...
360s Setting up r-cran-gdata (3.0.0-1) ...
360s Setting up r-cran-gplots (3.1.3.1-1) ...
360s Setting up r-cran-rocr (1.0-11-2build1) ...
360s Setting up adwaita-icon-theme (46~rc-1) ...
360s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
360s Setting up libheif-plugin-dav1d:s390x (1.17.6-1ubuntu1) ...
360s Setting up libheif-plugin-libde265:s390x (1.17.6-1ubuntu1) ...
360s Setting up libheif1:s390x (1.17.6-1ubuntu1) ...
360s Setting up libmagickcore-6.q16-7:s390x (8:6.9.12.98+dfsg1-5) ...
360s Setting up humanity-icon-theme (0.6.16) ...
361s Setting up libmagickwand-6.q16-7:s390x (8:6.9.12.98+dfsg1-5) ...
361s Setting up ubuntu-mono (24.04-0ubuntu1) ...
361s Setting up imagemagick-6.q16 (8:6.9.12.98+dfsg1-5) ...
361s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode
361s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode
361s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode
361s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode
361s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode
361s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode
361s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode
361s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode
361s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode
361s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode
361s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode
361s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode
361s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode
361s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode
361s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode
361s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode
361s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode
361s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode
361s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode
361s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode
361s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode
361s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode
361s Setting up imagemagick (8:6.9.12.98+dfsg1-5) ...
361s Processing triggers for install-info (7.1-3) ...
361s Processing triggers for libglib2.0-0:s390x (2.79.2-1~ubuntu1) ...
361s Setting up libgtk-3-0:s390x (3.24.40-2ubuntu1) ...
361s Processing triggers for libc-bin (2.39-0ubuntu6) ...
361s Processing triggers for man-db (2.12.0-3) ...
362s Processing triggers for udev (255.2-3ubuntu2) ...
362s Setting up libwxgtk3.2-1:s390x (3.2.4+dfsg-3) ...
362s Setting up gnuplot-qt (5.4.4+dfsg1-2build1) ...
362s update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode
362s Setting up murasaki-common (1.68.6-13build4) ...
362s Setting up gnuplot (5.4.4+dfsg1-2build1) ...
362s Setting up murasaki (1.68.6-13build4) ...
362s Setting up murasaki-mpi (1.68.6-13build4) ...
362s Setting up autopkgtest-satdep (0) ...
362s Processing triggers for libc-bin (2.39-0ubuntu6) ...
370s (Reading database ... 93557 files and directories currently installed.)
370s Removing autopkgtest-satdep (0) ...
371s autopkgtest [14:19:37]: test run-unit-test: [-----------------------
371s Test Murasaki on NZ_GG705055.fna
371s Created output directory: /tmp/autopkgtest.SNY1Dd/autopkgtest_tmp/output
371s Verbosity level is: 0
371s Writing to: output/test
371s Pattern is: 101
371s Max usable hash bits: 27
371s Hit filter is: 0
371s Hash table type is: EcoHash
371s Hashing every: 1 base
371s Histogram detail is: 0
371s Hashing function is: 3
371s Collision profiling is: disabled
371s Repeats are: unmasked
371s Mergefilter is at: 100
371s Random seed: 1711203577 (automatic)
371s Bitscore output: on
371s Leave status records: no
371s Join neighbors is: off
371s Target memory is: 1.30 GB
371s Retain members is: true
371s Store repeatmap? yes
371s Reverse complement data is generated on the fly
371s Rifts allowed: 0
371s Fuzzy Extension: yes
371s Score by minimum pair: yes
371s Gapped anchors: no
371s Large sequence support is: enabled => seqpos is 8 bytes
371s Murasaki version 1.68.6 (LARGESEQ)
371s Loading NZ_GG705055.fna
371s Read 398859bp (389.51 KBp) in 0.018 seconds (20.6 MBp/s)
371s Done with forward strand (410644bp). Preparing reverse complement...
371s  <-> Reversing metdata.
371s Done.
371s Seq NZ_GG705055.fna loaded. 401.02 KB
371s Loading NZ_GG705055.gbk
371s Read 398859bp (389.51 KBp) in 0.022 seconds (17.2 MBp/s)
371s Done with forward strand (410644bp). Preparing reverse complement...
371s  <-> Reversing metdata.
371s Done.
371s Seq NZ_GG705055.gbk loaded. 401.02 KB
371s Sequence loading took: 0.041 seconds
371s Forward frequencies:  A:28.0367%  C:23.1004%  G:20.9036%  T:27.9593%
371s Global base frequencies:  A/T:55.996%  C/G:44.004%
371s Pat: 3 bases long with weight 2
371s    1 101 
371s Computing hash parameters...
371s Using 4 hashbits
371s  0%......... (T -0.097 seconds) ETA: Sat Mar 23 14:19:37 2024
371s 10%......... (T -0.087 seconds) ETA: Sat Mar 23 14:19:37 2024
371s 20%......... (T -0.076 seconds) ETA: Sat Mar 23 14:19:37 2024
371s 30%......... (T -0.065 seconds) ETA: Sat Mar 23 14:19:37 2024
371s 40%......... (T -0.056 seconds) ETA: Sat Mar 23 14:19:37 2024
371s 50%......... (T -0.045 seconds) ETA: Sat Mar 23 14:19:37 2024
371s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:37 2024
371s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:37 2024
371s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:37 2024
371s 91%........
371s Acceptable hash function found after 1000 cycles.
371s Best uses 2/2 bases and has 0 empties from 2 inputs.
371s Score: 0.96875 (cf. worst: -4.51562)
371s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
371s Total correlation penalty: 0
371s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
371s                                             10
371s                                             ==
371s w[ 0]>>29:                                 -.C
371s w[ 0]>>30:                                  A.-
371s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
371s Ecolist (optimistic): Expcted entries per list: 17
371s Ecolist (optimistic): Minimum chunks per list: 2
371s Would take minimum 256.000000 bytes to make perfect hash.
371s Hashing 1.52 MB of sequence requires: 
371s  ~ linear (in seq length) hashing cost of 4.18 MB
371s  ~ linear (in seq length) expected anchor cost of 37.60 MB
371s Initial hash table uses: 256 bytes (4 bits, 16 entries)
371s Expected memory usage (without anchors): 4.18 MB
371s Expected memory usage (with anchors): 41.78 MB
371s Hash parameters computed in 0.111 seconds
371s Creating storage structures: 16 entries in 256 bytes space.
371s Storage structures created in: 0.000 seconds
371s 
371s Hashing NZ_GG705055.fna forwards
371s  0%......... (T -0.063 seconds) ETA: Sat Mar 23 14:19:38 2024
371s 10%......... (T -0.070 seconds) ETA: Sat Mar 23 14:19:38 2024
371s 20%......... (T -0.054 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 30%......... (T -0.048 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 40%......... (T -0.038 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 50%......... (T -0.035 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 60%......... (T -0.026 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 70%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 80%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 90%.........
372s Hashing NZ_GG705055.fna backwards
372s  0%......... (T -0.040 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 10%......... (T -0.032 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 20%......... (T -0.027 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 30%......... (T -0.029 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 40%......... (T -0.025 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 50%......... (T -0.019 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 60%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 70%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 80%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 90%.........
372s Hashing NZ_GG705055.gbk forwards
372s  0%......... (T -0.031 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 10%......... (T -0.028 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 20%......... (T -0.025 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 30%......... (T -0.021 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 40%......... (T -0.018 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 50%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 60%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 70%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 80%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 90%.........
372s Hashing NZ_GG705055.gbk backwards
372s  0%......... (T -0.031 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 10%......... (T -0.028 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 20%......... (T -0.025 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 30%......... (T -0.021 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 40%......... (T -0.018 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 50%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 60%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 70%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 80%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:38 2024
372s 90%.........
372s Initial hashing took: 0.201 seconds
372s Extracting anchors from hash-space.
372s  (T -1.408 seconds) ETA: Sat Mar 23 14:19:39 2024
372s  6%. (T -1.425 seconds) ETA: Sat Mar 23 14:19:39 2024
372s 18%. (T -1.115 seconds) ETA: Sat Mar 23 14:19:39 2024
372s 31%. (T -0.886 seconds) ETA: Sat Mar 23 14:19:39 2024
372s 43%. (T -0.608 seconds) ETA: Sat Mar 23 14:19:39 2024
373s 56%. (T -0.456 seconds) ETA: Sat Mar 23 14:19:39 2024
373s 68%. (T -0.265 seconds) ETA: Sat Mar 23 14:19:39 2024
373s 81%. (T -0.103 seconds) ETA: Sat Mar 23 14:19:39 2024
373s 93%.
373s Anchor extraction completed in: 1.457 seconds
373s Total anchors: 0
373s Anchor extraction + merge time: 1.457 seconds
373s Total processing time: 1.811 seconds
373s Writing anchors...
373s Total seeds used in anchors: 16
373s Hash performance:
373s  Keys used: 16 out of 16 possible (100.00%).
373s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
373s  Average pigeons per pigeon hole: 1
373s Writing 16 repeats...Output writing finished in: 0.256 seconds
373s Total time: 2.067 seconds
373s Murasaki finished!
373s PASSED MURASAKI
373s 
373s Testing Genepare on NZ_GG705055.fna
373s 1001
373s PASSED GENEPARSE
373s 
373s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
373s Testing mbfa on NZ_GG705055.fna
373s PASSED mbfa
373s 
373s Test Murasaki on NZ_GG705056.fna
373s Verbosity level is: 0
373s Writing to: output/test
373s Pattern is: 101
373s Max usable hash bits: 27
373s Hit filter is: 0
373s Hash table type is: EcoHash
373s Hashing every: 1 base
373s Histogram detail is: 0
373s Hashing function is: 3
373s Collision profiling is: disabled
373s Repeats are: unmasked
373s Mergefilter is at: 100
373s Random seed: 1711203579 (automatic)
373s Bitscore output: on
373s Leave status records: no
373s Join neighbors is: off
373s Target memory is: 1.30 GB
373s Retain members is: true
373s Store repeatmap? yes
373s Reverse complement data is generated on the fly
373s Rifts allowed: 0
373s Fuzzy Extension: yes
373s Score by minimum pair: yes
373s Gapped anchors: no
373s Large sequence support is: enabled => seqpos is 8 bytes
373s Murasaki version 1.68.6 (LARGESEQ)
373s Loading NZ_GG705056.fna
373s Read 395160bp (385.90 KBp) in 0.018 seconds (20.7 MBp/s)
373s Done with forward strand (409732bp). Preparing reverse complement...
373s  <-> Reversing metdata.
373s Done.
373s Seq NZ_GG705056.fna loaded. 400.13 KB
373s Loading NZ_GG705056.gbk
374s Read 395160bp (385.90 KBp) in 0.022 seconds (16.8 MBp/s)
374s Done with forward strand (409732bp). Preparing reverse complement...
374s  <-> Reversing metdata.
374s Done.
374s Seq NZ_GG705056.gbk loaded. 400.13 KB
374s Sequence loading took: 0.041 seconds
374s Forward frequencies:  A:28.3574%  C:22.4405%  G:20.4591%  T:28.743%
374s Global base frequencies:  A/T:57.1004%  C/G:42.8996%
374s Pat: 3 bases long with weight 2
374s    1 101 
374s Computing hash parameters...
374s Using 4 hashbits
374s  0%......... (T -0.099 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 20%......... (T -0.086 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 30%......... (T -0.080 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 40%......... (T -0.071 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 50%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 60%......... (T -0.040 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 70%......... (T -0.026 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 91%........
374s Acceptable hash function found after 1000 cycles.
374s Best uses 2/2 bases and has 0 empties from 2 inputs.
374s Score: 0.96875 (cf. worst: -4.51562)
374s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
374s Total correlation penalty: 0
374s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
374s                                             10
374s                                             ==
374s w[ 0]>>29:                                 -.C
374s w[ 0]>>30:                                  A.-
374s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
374s Ecolist (optimistic): Expcted entries per list: 17
374s Ecolist (optimistic): Minimum chunks per list: 2
374s Would take minimum 256.000000 bytes to make perfect hash.
374s Hashing 1.51 MB of sequence requires: 
374s  ~ linear (in seq length) hashing cost of 4.15 MB
374s  ~ linear (in seq length) expected anchor cost of 37.51 MB
374s Initial hash table uses: 256 bytes (4 bits, 16 entries)
374s Expected memory usage (without anchors): 4.15 MB
374s Expected memory usage (with anchors): 41.66 MB
374s Hash parameters computed in 0.126 seconds
374s Creating storage structures: 16 entries in 256 bytes space.
374s Storage structures created in: 0.000 seconds
374s 
374s Hashing NZ_GG705056.fna forwards
374s  0%......... (T -0.027 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 10%......... (T -0.025 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 20%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 30%......... (T -0.019 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 40%......... (T -0.016 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 50%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 60%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 70%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 80%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 90%.........
374s Hashing NZ_GG705056.fna backwards
374s  0%......... (T -0.032 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 10%......... (T -0.028 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 20%......... (T -0.025 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 30%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 40%......... (T -0.018 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 50%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 60%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 70%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 80%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 90%.........
374s Hashing NZ_GG705056.gbk forwards
374s  0%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 10%......... (T -0.030 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 20%......... (T -0.026 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 30%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 40%......... (T -0.018 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 50%......... (T -0.015 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 60%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 70%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 80%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 90%.........
374s Hashing NZ_GG705056.gbk backwards
374s  0%......... (T -0.049 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 10%......... (T -0.067 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 20%......... (T -0.050 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 30%......... (T -0.038 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 40%......... (T -0.029 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 50%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 60%......... (T -0.016 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 70%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 80%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:40 2024
374s 90%.........
374s Initial hashing took: 0.154 seconds
374s Extracting anchors from hash-space.
374s  (T -1.871 seconds) ETA: Sat Mar 23 14:19:42 2024
374s  6%. (T -1.377 seconds) ETA: Sat Mar 23 14:19:41 2024
374s 18%. (T -1.111 seconds) ETA: Sat Mar 23 14:19:41 2024
374s 31%. (T -0.842 seconds) ETA: Sat Mar 23 14:19:41 2024
375s 43%. (T -0.635 seconds) ETA: Sat Mar 23 14:19:41 2024
375s 56%. (T -0.440 seconds) ETA: Sat Mar 23 14:19:41 2024
375s 68%. (T -0.272 seconds) ETA: Sat Mar 23 14:19:41 2024
375s 81%. (T -0.100 seconds) ETA: Sat Mar 23 14:19:41 2024
375s 93%.
375s Anchor extraction completed in: 1.451 seconds
375s Total anchors: 0
375s Anchor extraction + merge time: 1.451 seconds
375s Total processing time: 1.773 seconds
375s Writing anchors...
375s Total seeds used in anchors: 16
375s Hash performance:
375s  Keys used: 16 out of 16 possible (100.00%).
375s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
375s  Average pigeons per pigeon hole: 1
375s Writing 16 repeats...Output writing finished in: 0.250 seconds
375s Total time: 2.023 seconds
375s Murasaki finished!
376s PASSED MURASAKI
376s 
376s Testing Genepare on NZ_GG705056.fna
376s 1001
376s PASSED GENEPARSE
376s 
376s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
376s Testing mbfa on NZ_GG705056.fna
376s PASSED mbfa
376s 
376s Test Murasaki on NZ_GG705057.fna
376s Verbosity level is: 0
376s Writing to: output/test
376s Pattern is: 101
376s Max usable hash bits: 27
376s Hit filter is: 0
376s Hash table type is: EcoHash
376s Hashing every: 1 base
376s Histogram detail is: 0
376s Hashing function is: 3
376s Collision profiling is: disabled
376s Repeats are: unmasked
376s Mergefilter is at: 100
376s Random seed: 1711203582 (automatic)
376s Bitscore output: on
376s Leave status records: no
376s Join neighbors is: off
376s Target memory is: 1.30 GB
376s Retain members is: true
376s Store repeatmap? yes
376s Reverse complement data is generated on the fly
376s Rifts allowed: 0
376s Fuzzy Extension: yes
376s Score by minimum pair: yes
376s Gapped anchors: no
376s Large sequence support is: enabled => seqpos is 8 bytes
376s Murasaki version 1.68.6 (LARGESEQ)
376s Loading NZ_GG705057.fna
376s Read 295987bp (289.05 KBp) in 0.013 seconds (21.6 MBp/s)
376s Done with forward strand (304045bp). Preparing reverse complement...
376s  <-> Reversing metdata.
376s Done.
376s Seq NZ_GG705057.fna loaded. 296.92 KB
376s Loading NZ_GG705057.gbk
376s Read 295987bp (289.05 KBp) in 0.022 seconds (12.6 MBp/s)
376s Done with forward strand (304045bp). Preparing reverse complement...
376s  <-> Reversing metdata.
376s Done.
376s Seq NZ_GG705057.gbk loaded. 296.92 KB
376s Sequence loading took: 0.036 seconds
376s Forward frequencies:  A:28.7229%  C:20.2448%  G:22.7206%  T:28.3117%
376s Global base frequencies:  A/T:57.0346%  C/G:42.9654%
376s Pat: 3 bases long with weight 2
376s    1 101 
376s Computing hash parameters...
376s Using 4 hashbits
376s  0%......... (T -0.111 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 10%......... (T -0.100 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 20%......... (T -0.084 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 30%......... (T -0.070 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 40%......... (T -0.058 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 60%......... (T -0.037 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 70%......... (T -0.025 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 91%........
376s Acceptable hash function found after 1000 cycles.
376s Best uses 2/2 bases and has 0 empties from 2 inputs.
376s Score: 0.96875 (cf. worst: -4.51562)
376s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
376s Total correlation penalty: 0
376s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
376s                                             10
376s                                             ==
376s w[ 0]>>29:                                 -.C
376s w[ 0]>>30:                                  A.-
376s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
376s Ecolist (optimistic): Expcted entries per list: 17
376s Ecolist (optimistic): Minimum chunks per list: 2
376s Would take minimum 256.000000 bytes to make perfect hash.
376s Hashing 1.13 MB of sequence requires: 
376s  ~ linear (in seq length) hashing cost of 3.11 MB
376s  ~ linear (in seq length) expected anchor cost of 27.84 MB
376s Initial hash table uses: 256 bytes (4 bits, 16 entries)
376s Expected memory usage (without anchors): 3.11 MB
376s Expected memory usage (with anchors): 30.94 MB
376s Hash parameters computed in 0.123 seconds
376s Creating storage structures: 16 entries in 256 bytes space.
376s Storage structures created in: 0.000 seconds
376s 
376s Hashing NZ_GG705057.fna forwards
376s  0%......... (T -0.026 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 10%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 20%......... (T -0.019 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 30%......... (T -0.016 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 40%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 50%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 60%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 70%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 80%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 90%.........
376s Hashing NZ_GG705057.fna backwards
376s  0%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 10%......... (T -0.020 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 20%......... (T -0.018 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 30%......... (T -0.015 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 40%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 50%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 60%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 70%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 80%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 90%.........
376s Hashing NZ_GG705057.gbk forwards
376s  0%......... (T -0.025 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 10%......... (T -0.028 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 20%......... (T -0.026 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 30%......... (T -0.020 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 40%......... (T -0.016 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 50%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 60%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 70%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 80%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 90%.........
376s Hashing NZ_GG705057.gbk backwards
376s  0%......... (T -0.032 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 10%......... (T -0.024 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 20%......... (T -0.020 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 30%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 40%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 50%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 60%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 70%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 80%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:42 2024
376s 90%.........
376s Initial hashing took: 0.113 seconds
376s Extracting anchors from hash-space.
376s  (T -1.062 seconds) ETA: Sat Mar 23 14:19:43 2024
376s  6%. (T -1.161 seconds) ETA: Sat Mar 23 14:19:43 2024
376s 18%. (T -0.826 seconds) ETA: Sat Mar 23 14:19:43 2024
376s 31%. (T -0.701 seconds) ETA: Sat Mar 23 14:19:43 2024
376s 43%. (T -0.514 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 56%. (T -0.385 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 68%. (T -0.218 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 81%. (T -0.084 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 93%.
377s Anchor extraction completed in: 1.199 seconds
377s Total anchors: 0
377s Anchor extraction + merge time: 1.199 seconds
377s Total processing time: 1.472 seconds
377s Writing anchors...
377s Total seeds used in anchors: 16
377s Hash performance:
377s  Keys used: 16 out of 16 possible (100.00%).
377s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
377s  Average pigeons per pigeon hole: 1
377s Writing 16 repeats...Output writing finished in: 0.211 seconds
377s Total time: 1.682 seconds
377s Murasaki finished!
377s PASSED MURASAKI
377s 
377s Testing Genepare on NZ_GG705057.fna
377s 1001
377s PASSED GENEPARSE
377s 
377s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
377s Testing mbfa on NZ_GG705057.fna
377s PASSED mbfa
377s 
377s Test Murasaki on NZ_GG705058.fna
377s Verbosity level is: 0
377s Writing to: output/test
377s Pattern is: 101
377s Max usable hash bits: 27
377s Hit filter is: 0
377s Hash table type is: EcoHash
377s Hashing every: 1 base
377s Histogram detail is: 0
377s Hashing function is: 3
377s Collision profiling is: disabled
377s Repeats are: unmasked
377s Mergefilter is at: 100
377s Random seed: 1711203583 (automatic)
377s Bitscore output: on
377s Leave status records: no
377s Join neighbors is: off
377s Target memory is: 1.30 GB
377s Retain members is: true
377s Store repeatmap? yes
377s Reverse complement data is generated on the fly
377s Rifts allowed: 0
377s Fuzzy Extension: yes
377s Score by minimum pair: yes
377s Gapped anchors: no
377s Large sequence support is: enabled => seqpos is 8 bytes
377s Murasaki version 1.68.6 (LARGESEQ)
377s Loading NZ_GG705058.fna
377s Read 261113bp (254.99 KBp) in 0.014 seconds (17.4 MBp/s)
377s Done with forward strand (268087bp). Preparing reverse complement...
377s  <-> Reversing metdata.
377s Done.
377s Seq NZ_GG705058.fna loaded. 261.80 KB
377s Loading NZ_GG705058.gbk
377s Read 261113bp (254.99 KBp) in 0.015 seconds (17.0 MBp/s)
377s Done with forward strand (268087bp). Preparing reverse complement...
377s  <-> Reversing metdata.
377s Done.
377s Seq NZ_GG705058.gbk loaded. 261.80 KB
377s Sequence loading took: 0.029 seconds
377s Forward frequencies:  A:29.3149%  C:19.6057%  G:21.8568%  T:29.2226%
377s Global base frequencies:  A/T:58.5375%  C/G:41.4625%
377s Pat: 3 bases long with weight 2
377s    1 101 
377s Computing hash parameters...
377s Using 4 hashbits
377s  0%......... (T -0.099 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 10%......... (T -0.096 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 20%......... (T -0.082 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 30%......... (T -0.069 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 40%......... (T -0.057 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 50%......... (T -0.048 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 60%......... (T -0.036 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 91%........
377s Acceptable hash function found after 1000 cycles.
377s Best uses 2/2 bases and has 0 empties from 2 inputs.
377s Score: 0.96875 (cf. worst: -4.51562)
377s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
377s Total correlation penalty: 0
377s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
377s                                             10
377s                                             ==
377s w[ 0]>>29:                                 -.C
377s w[ 0]>>30:                                  A.-
377s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
377s Ecolist (optimistic): Expcted entries per list: 16
377s Ecolist (optimistic): Minimum chunks per list: 2
377s Would take minimum 256.000000 bytes to make perfect hash.
377s Hashing 1019.97 KB of sequence requires: 
377s  ~ linear (in seq length) hashing cost of 2.74 MB
377s  ~ linear (in seq length) expected anchor cost of 24.54 MB
377s Initial hash table uses: 256 bytes (4 bits, 16 entries)
377s Expected memory usage (without anchors): 2.74 MB
377s Expected memory usage (with anchors): 27.28 MB
377s Hash parameters computed in 0.121 seconds
377s Creating storage structures: 16 entries in 256 bytes space.
377s Storage structures created in: 0.000 seconds
377s 
377s Hashing NZ_GG705058.fna forwards
377s  0%......... (T -0.018 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 10%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 20%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 30%......... (T -0.012 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 40%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 50%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:43 2024
377s 60%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:43 2024
378s 70%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:43 2024
378s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:43 2024
378s 90%.........
378s Hashing NZ_GG705058.fna backwards
378s  0%......... (T -0.037 seconds) ETA: Sat Mar 23 14:19:43 2024
378s 10%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:43 2024
378s 20%......... (T -0.025 seconds) ETA: Sat Mar 23 14:19:43 2024
378s 30%......... (T -0.020 seconds) ETA: Sat Mar 23 14:19:43 2024
378s 40%......... (T -0.016 seconds) ETA: Sat Mar 23 14:19:43 2024
378s 50%......... (T -0.012 seconds) ETA: Sat Mar 23 14:19:43 2024
378s 60%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:43 2024
378s 70%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:43 2024
378s 80%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:43 2024
378s 90%.........
378s Hashing NZ_GG705058.gbk forwards
378s  0%......... (T -0.021 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 10%......... (T -0.019 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 20%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 30%......... (T -0.015 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 40%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 50%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 60%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 70%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 80%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 90%.........
378s Hashing NZ_GG705058.gbk backwards
378s  0%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 10%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 20%......... (T -0.018 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 30%......... (T -0.015 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 40%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 50%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 60%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 70%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 90%.........
378s Initial hashing took: 0.101 seconds
378s Extracting anchors from hash-space.
378s  (T -0.832 seconds) ETA: Sat Mar 23 14:19:44 2024
378s  6%. (T -1.039 seconds) ETA: Sat Mar 23 14:19:45 2024
378s 18%. (T -0.714 seconds) ETA: Sat Mar 23 14:19:45 2024
378s 31%. (T -0.590 seconds) ETA: Sat Mar 23 14:19:45 2024
378s 43%. (T -0.426 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 56%. (T -0.309 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 68%. (T -0.174 seconds) ETA: Sat Mar 23 14:19:44 2024
378s 81%. (T -0.070 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 93%.
379s Anchor extraction completed in: 0.995 seconds
379s Total anchors: 0
379s Anchor extraction + merge time: 0.995 seconds
379s Total processing time: 1.246 seconds
379s Writing anchors...
379s Total seeds used in anchors: 16
379s Hash performance:
379s  Keys used: 16 out of 16 possible (100.00%).
379s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
379s  Average pigeons per pigeon hole: 1
379s Writing 16 repeats...Output writing finished in: 0.213 seconds
379s Total time: 1.459 seconds
379s Murasaki finished!
379s PASSED MURASAKI
379s 
379s Testing Genepare on NZ_GG705058.fna
379s 1001
379s PASSED GENEPARSE
379s 
379s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
379s Testing mbfa on NZ_GG705058.fna
379s PASSED mbfa
379s 
379s Test Murasaki on NZ_GG705059.fna
379s Verbosity level is: 0
379s Writing to: output/test
379s Pattern is: 101
379s Max usable hash bits: 27
379s Hit filter is: 0
379s Hash table type is: EcoHash
379s Hashing every: 1 base
379s Histogram detail is: 0
379s Hashing function is: 3
379s Collision profiling is: disabled
379s Repeats are: unmasked
379s Mergefilter is at: 100
379s Random seed: 1711203585 (automatic)
379s Bitscore output: on
379s Leave status records: no
379s Join neighbors is: off
379s Target memory is: 1.30 GB
379s Retain members is: true
379s Store repeatmap? yes
379s Reverse complement data is generated on the fly
379s Rifts allowed: 0
379s Fuzzy Extension: yes
379s Score by minimum pair: yes
379s Gapped anchors: no
379s Large sequence support is: enabled => seqpos is 8 bytes
379s Murasaki version 1.68.6 (LARGESEQ)
379s Loading NZ_GG705059.fna
379s Read 254292bp (248.33 KBp) in 0.012 seconds (19.4 MBp/s)
379s Done with forward strand (263842bp). Preparing reverse complement...
379s  <-> Reversing metdata.
379s Done.
379s Seq NZ_GG705059.fna loaded. 257.66 KB
379s Loading NZ_GG705059.gbk
379s Read 254292bp (248.33 KBp) in 0.017 seconds (14.1 MBp/s)
379s Done with forward strand (263842bp). Preparing reverse complement...
379s  <-> Reversing metdata.
379s Done.
379s Seq NZ_GG705059.gbk loaded. 257.66 KB
379s Sequence loading took: 0.030 seconds
379s Forward frequencies:  A:28.2899%  C:22.6452%  G:20.7128%  T:28.3521%
379s Global base frequencies:  A/T:56.642%  C/G:43.358%
379s Pat: 3 bases long with weight 2
379s    1 101 
379s Computing hash parameters...
379s Using 4 hashbits
379s  0%......... (T -0.101 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 10%......... (T -0.094 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 20%......... (T -0.087 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 30%......... (T -0.074 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 40%......... (T -0.061 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 50%......... (T -0.049 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 60%......... (T -0.037 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 70%......... (T -0.025 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 91%........
379s Acceptable hash function found after 1000 cycles.
379s Best uses 2/2 bases and has 0 empties from 2 inputs.
379s Score: 0.96875 (cf. worst: -4.51562)
379s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
379s Total correlation penalty: 0
379s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
379s                                             10
379s                                             ==
379s w[ 0]>>29:                                 -.C
379s w[ 0]>>30:                                  A.-
379s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
379s Ecolist (optimistic): Expcted entries per list: 16
379s Ecolist (optimistic): Minimum chunks per list: 2
379s Would take minimum 256.000000 bytes to make perfect hash.
379s Hashing 993.33 KB of sequence requires: 
379s  ~ linear (in seq length) hashing cost of 2.67 MB
379s  ~ linear (in seq length) expected anchor cost of 24.16 MB
379s Initial hash table uses: 256 bytes (4 bits, 16 entries)
379s Expected memory usage (without anchors): 2.67 MB
379s Expected memory usage (with anchors): 26.82 MB
379s Hash parameters computed in 0.123 seconds
379s Creating storage structures: 16 entries in 256 bytes space.
379s Storage structures created in: 0.000 seconds
379s 
379s Hashing NZ_GG705059.fna forwards
379s  0%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 10%......... (T -0.031 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 20%......... (T -0.026 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 30%......... (T -0.021 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 40%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 50%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 60%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 70%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 80%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 90%.........
379s Hashing NZ_GG705059.fna backwards
379s  0%......... (T -0.021 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 10%......... (T -0.019 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 20%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 30%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 40%......... (T -0.012 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 50%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 60%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 70%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 80%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 90%.........
379s Hashing NZ_GG705059.gbk forwards
379s  0%......... (T -0.021 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 10%......... (T -0.018 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 20%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 30%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 40%......... (T -0.012 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 50%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 60%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 70%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 90%.........
379s Hashing NZ_GG705059.gbk backwards
379s  0%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 10%......... (T -0.020 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 20%......... (T -0.018 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 30%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 40%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 50%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 60%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 70%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 80%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:45 2024
379s 90%.........
379s Initial hashing took: 0.107 seconds
379s Extracting anchors from hash-space.
379s  (T -0.891 seconds) ETA: Sat Mar 23 14:19:46 2024
379s  6%. (T -0.669 seconds) ETA: Sat Mar 23 14:19:46 2024
379s 18%. (T -0.613 seconds) ETA: Sat Mar 23 14:19:46 2024
379s 31%. (T -0.516 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 43%. (T -0.425 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 56%. (T -0.305 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 68%. (T -0.186 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 81%. (T -0.066 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 93%.
380s Anchor extraction completed in: 0.931 seconds
380s Total anchors: 0
380s Anchor extraction + merge time: 0.931 seconds
380s Total processing time: 1.191 seconds
380s Writing anchors...
380s Total seeds used in anchors: 16
380s Hash performance:
380s  Keys used: 16 out of 16 possible (100.00%).
380s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
380s  Average pigeons per pigeon hole: 1
380s Writing 16 repeats...Output writing finished in: 0.168 seconds
380s Total time: 1.359 seconds
380s Murasaki finished!
380s PASSED MURASAKI
380s 
380s Testing Genepare on NZ_GG705059.fna
380s 1001
380s PASSED GENEPARSE
380s 
380s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
380s Testing mbfa on NZ_GG705059.fna
380s PASSED mbfa
380s 
380s Test Murasaki on NZ_GG705060.fna
380s Verbosity level is: 0
380s Writing to: output/test
380s Pattern is: 101
380s Max usable hash bits: 27
380s Hit filter is: 0
380s Hash table type is: EcoHash
380s Hashing every: 1 base
380s Histogram detail is: 0
380s Hashing function is: 3
380s Collision profiling is: disabled
380s Repeats are: unmasked
380s Mergefilter is at: 100
380s Random seed: 1711203586 (automatic)
380s Bitscore output: on
380s Leave status records: no
380s Join neighbors is: off
380s Target memory is: 1.30 GB
380s Retain members is: true
380s Store repeatmap? yes
380s Reverse complement data is generated on the fly
380s Rifts allowed: 0
380s Fuzzy Extension: yes
380s Score by minimum pair: yes
380s Gapped anchors: no
380s Large sequence support is: enabled => seqpos is 8 bytes
380s Murasaki version 1.68.6 (LARGESEQ)
380s Loading NZ_GG705060.fna
380s Read 250160bp (244.30 KBp) in 0.013 seconds (18.6 MBp/s)
380s Done with forward strand (261824bp). Preparing reverse complement...
380s  <-> Reversing metdata.
380s Done.
380s Seq NZ_GG705060.fna loaded. 255.69 KB
380s Loading NZ_GG705060.gbk
380s Read 250160bp (244.30 KBp) in 0.014 seconds (16.8 MBp/s)
380s Done with forward strand (261824bp). Preparing reverse complement...
380s  <-> Reversing metdata.
380s Done.
380s Seq NZ_GG705060.gbk loaded. 255.69 KB
380s Sequence loading took: 0.027 seconds
380s Forward frequencies:  A:28.3151%  C:22.1794%  G:20.8447%  T:28.6609%
380s Global base frequencies:  A/T:56.9759%  C/G:43.0241%
380s Pat: 3 bases long with weight 2
380s    1 101 
380s Computing hash parameters...
380s Using 4 hashbits
380s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 40%......... (T -0.056 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 91%........
380s Acceptable hash function found after 1000 cycles.
380s Best uses 2/2 bases and has 0 empties from 2 inputs.
380s Score: 0.96875 (cf. worst: -4.51562)
380s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
380s Total correlation penalty: 0
380s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
380s                                             10
380s                                             ==
380s w[ 0]>>29:                                 -.C
380s w[ 0]>>30:                                  A.-
380s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
380s Ecolist (optimistic): Expcted entries per list: 16
380s Ecolist (optimistic): Minimum chunks per list: 3
380s Would take minimum 256.000000 bytes to make perfect hash.
380s Hashing 977.19 KB of sequence requires: 
380s  ~ linear (in seq length) hashing cost of 2.50 MB
380s  ~ linear (in seq length) expected anchor cost of 23.97 MB
380s Initial hash table uses: 256 bytes (4 bits, 16 entries)
380s Expected memory usage (without anchors): 2.51 MB
380s Expected memory usage (with anchors): 26.48 MB
380s Hash parameters computed in 0.113 seconds
380s Creating storage structures: 16 entries in 256 bytes space.
380s Storage structures created in: 0.000 seconds
380s 
380s Hashing NZ_GG705060.fna forwards
380s  0%......... (T -0.016 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 10%......... (T -0.015 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 20%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 30%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 40%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 50%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 60%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 70%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 90%.........
380s Hashing NZ_GG705060.fna backwards
380s  0%......... (T -0.021 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 10%......... (T -0.018 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 20%......... (T -0.015 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 30%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 40%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 50%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 60%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 70%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 80%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 90%.........
380s Hashing NZ_GG705060.gbk forwards
380s  0%......... (T -0.019 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 10%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 20%......... (T -0.015 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 30%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 40%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 50%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 60%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 70%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 90%.........
380s Hashing NZ_GG705060.gbk backwards
380s  0%......... (T -0.019 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 10%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 20%......... (T -0.015 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 30%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 40%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:46 2024
380s 50%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:46 2024
381s 60%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:46 2024
381s 70%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:46 2024
381s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:46 2024
381s 90%.........
381s Initial hashing took: 0.090 seconds
381s Extracting anchors from hash-space.
381s  (T -0.630 seconds) ETA: Sat Mar 23 14:19:47 2024
381s  6%. (T -0.502 seconds) ETA: Sat Mar 23 14:19:47 2024
381s 18%. (T -0.471 seconds) ETA: Sat Mar 23 14:19:47 2024
381s 31%. (T -0.390 seconds) ETA: Sat Mar 23 14:19:47 2024
381s 43%. (T -0.329 seconds) ETA: Sat Mar 23 14:19:47 2024
381s 56%. (T -0.237 seconds) ETA: Sat Mar 23 14:19:47 2024
381s 68%. (T -0.143 seconds) ETA: Sat Mar 23 14:19:47 2024
381s 81%. (T -0.050 seconds) ETA: Sat Mar 23 14:19:47 2024
381s 93%.
381s Anchor extraction completed in: 0.717 seconds
381s Total anchors: 0
381s Anchor extraction + merge time: 0.717 seconds
381s Total processing time: 0.948 seconds
381s Writing anchors...
381s Total seeds used in anchors: 16
381s Hash performance:
381s  Keys used: 16 out of 16 possible (100.00%).
381s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
381s  Average pigeons per pigeon hole: 1
381s Writing 16 repeats...Output writing finished in: 0.156 seconds
381s Total time: 1.104 seconds
381s Murasaki finished!
381s PASSED MURASAKI
381s 
381s Testing Genepare on NZ_GG705060.fna
381s 1001
381s PASSED GENEPARSE
381s 
381s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
381s Testing mbfa on NZ_GG705060.fna
381s PASSED mbfa
381s 
381s Test Murasaki on NZ_GG705061.fna
381s Verbosity level is: 0
381s Writing to: output/test
381s Pattern is: 101
381s Max usable hash bits: 27
381s Hit filter is: 0
381s Hash table type is: EcoHash
381s Hashing every: 1 base
381s Histogram detail is: 0
381s Hashing function is: 3
381s Collision profiling is: disabled
381s Repeats are: unmasked
381s Mergefilter is at: 100
381s Random seed: 1711203587 (automatic)
381s Bitscore output: on
381s Leave status records: no
381s Join neighbors is: off
381s Target memory is: 1.30 GB
381s Retain members is: true
381s Store repeatmap? yes
381s Reverse complement data is generated on the fly
381s Rifts allowed: 0
381s Fuzzy Extension: yes
381s Score by minimum pair: yes
381s Gapped anchors: no
381s Large sequence support is: enabled => seqpos is 8 bytes
381s Murasaki version 1.68.6 (LARGESEQ)
381s Loading NZ_GG705061.fna
381s Read 229103bp (223.73 KBp) in 0.010 seconds (21.3 MBp/s)
381s Done with forward strand (233240bp). Preparing reverse complement...
381s  <-> Reversing metdata.
381s Done.
381s Seq NZ_GG705061.fna loaded. 227.77 KB
381s Loading NZ_GG705061.gbk
381s Read 229103bp (223.73 KBp) in 0.013 seconds (17.1 MBp/s)
381s Done with forward strand (233240bp). Preparing reverse complement...
381s  <-> Reversing metdata.
381s Done.
381s Seq NZ_GG705061.gbk loaded. 227.77 KB
381s Sequence loading took: 0.023 seconds
381s Forward frequencies:  A:28.2371%  C:22.8212%  G:21.0028%  T:27.939%
381s Global base frequencies:  A/T:56.176%  C/G:43.824%
381s Pat: 3 bases long with weight 2
381s    1 101 
381s Computing hash parameters...
381s Using 4 hashbits
381s  0%......... (T -0.101 seconds) ETA: Sat Mar 23 14:19:48 2024
381s 10%......... (T -0.091 seconds) ETA: Sat Mar 23 14:19:48 2024
381s 20%......... (T -0.078 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 91%........
382s Acceptable hash function found after 1000 cycles.
382s Best uses 2/2 bases and has 0 empties from 2 inputs.
382s Score: 0.96875 (cf. worst: -4.51562)
382s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
382s Total correlation penalty: 0
382s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
382s                                             10
382s                                             ==
382s w[ 0]>>29:                                 -.C
382s w[ 0]>>30:                                  A.-
382s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
382s Ecolist (optimistic): Expcted entries per list: 16
382s Ecolist (optimistic): Minimum chunks per list: 3
382s Would take minimum 256.000000 bytes to make perfect hash.
382s Hashing 894.93 KB of sequence requires: 
382s  ~ linear (in seq length) hashing cost of 2.29 MB
382s  ~ linear (in seq length) expected anchor cost of 21.35 MB
382s Initial hash table uses: 256 bytes (4 bits, 16 entries)
382s Expected memory usage (without anchors): 2.29 MB
382s Expected memory usage (with anchors): 23.65 MB
382s Hash parameters computed in 0.110 seconds
382s Creating storage structures: 16 entries in 256 bytes space.
382s Storage structures created in: 0.000 seconds
382s 
382s Hashing NZ_GG705061.fna forwards
382s  0%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 10%......... (T -0.020 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 20%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 30%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 40%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 50%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 60%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 70%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 90%.........
382s Hashing NZ_GG705061.fna backwards
382s  0%......... (T -0.018 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 10%......... (T -0.015 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 20%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 30%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 40%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 50%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 60%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 70%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 90%.........
382s Hashing NZ_GG705061.gbk forwards
382s  0%......... (T -0.019 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 10%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 20%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 30%......... (T -0.012 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 40%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 50%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 60%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 70%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 90%.........
382s Hashing NZ_GG705061.gbk backwards
382s  0%......... (T -0.019 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 10%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 20%......... (T -0.015 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 30%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 40%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 50%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 60%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 70%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 90%.........
382s Initial hashing took: 0.084 seconds
382s Extracting anchors from hash-space.
382s  (T -0.563 seconds) ETA: Sat Mar 23 14:19:48 2024
382s  6%. (T -0.657 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 18%. (T -0.519 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 31%. (T -0.508 seconds) ETA: Sat Mar 23 14:19:49 2024
382s 43%. (T -0.376 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 56%. (T -0.289 seconds) ETA: Sat Mar 23 14:19:49 2024
382s 68%. (T -0.167 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 81%. (T -0.060 seconds) ETA: Sat Mar 23 14:19:48 2024
382s 93%.
382s Anchor extraction completed in: 0.830 seconds
382s Total anchors: 0
382s Anchor extraction + merge time: 0.830 seconds
382s Total processing time: 1.048 seconds
382s Writing anchors...
382s Total seeds used in anchors: 16
382s Hash performance:
382s  Keys used: 16 out of 16 possible (100.00%).
382s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
382s  Average pigeons per pigeon hole: 1
383s Writing 16 repeats...Output writing finished in: 0.165 seconds
383s Total time: 1.213 seconds
383s Murasaki finished!
383s PASSED MURASAKI
383s 
383s Testing Genepare on NZ_GG705061.fna
383s 1001
383s PASSED GENEPARSE
383s 
383s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
383s Testing mbfa on NZ_GG705061.fna
383s PASSED mbfa
383s 
383s Test Murasaki on NZ_GG705062.fna
383s Verbosity level is: 0
383s Writing to: output/test
383s Pattern is: 101
383s Max usable hash bits: 27
383s Hit filter is: 0
383s Hash table type is: EcoHash
383s Hashing every: 1 base
383s Histogram detail is: 0
383s Hashing function is: 3
383s Collision profiling is: disabled
383s Repeats are: unmasked
383s Mergefilter is at: 100
383s Random seed: 1711203589 (automatic)
383s Bitscore output: on
383s Leave status records: no
383s Join neighbors is: off
383s Target memory is: 1.30 GB
383s Retain members is: true
383s Store repeatmap? yes
383s Reverse complement data is generated on the fly
383s Rifts allowed: 0
383s Fuzzy Extension: yes
383s Score by minimum pair: yes
383s Gapped anchors: no
383s Large sequence support is: enabled => seqpos is 8 bytes
383s Murasaki version 1.68.6 (LARGESEQ)
383s Loading NZ_GG705062.fna
383s Read 174324bp (170.24 KBp) in 0.008 seconds (20.9 MBp/s)
383s Done with forward strand (181688bp). Preparing reverse complement...
383s  <-> Reversing metdata.
383s Done.
383s Seq NZ_GG705062.fna loaded. 177.43 KB
383s Loading NZ_GG705062.gbk
383s Read 174324bp (170.24 KBp) in 0.010 seconds (16.8 MBp/s)
383s Done with forward strand (181688bp). Preparing reverse complement...
383s  <-> Reversing metdata.
383s Done.
383s Seq NZ_GG705062.gbk loaded. 177.43 KB
383s Sequence loading took: 0.018 seconds
383s Forward frequencies:  A:28.8004%  C:19.6749%  G:21.6212%  T:29.9035%
383s Global base frequencies:  A/T:58.7039%  C/G:41.2961%
383s Pat: 3 bases long with weight 2
383s    1 101 
383s Computing hash parameters...
383s Using 4 hashbits
383s  0%......... (T -0.107 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 10%......... (T -0.098 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 20%......... (T -0.082 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 30%......... (T -0.070 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 40%......... (T -0.057 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 91%........
383s Acceptable hash function found after 1000 cycles.
383s Best uses 2/2 bases and has 0 empties from 2 inputs.
383s Score: 0.96875 (cf. worst: -4.51562)
383s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
383s Total correlation penalty: 0
383s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
383s                                             10
383s                                             ==
383s w[ 0]>>29:                                 -.C
383s w[ 0]>>30:                                  A.-
383s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
383s Ecolist (optimistic): Expcted entries per list: 16
383s Ecolist (optimistic): Minimum chunks per list: 3
383s Would take minimum 256.000000 bytes to make perfect hash.
383s Hashing 680.95 KB of sequence requires: 
383s  ~ linear (in seq length) hashing cost of 1.75 MB
383s  ~ linear (in seq length) expected anchor cost of 16.63 MB
383s Initial hash table uses: 256 bytes (4 bits, 16 entries)
383s Expected memory usage (without anchors): 1.75 MB
383s Expected memory usage (with anchors): 18.38 MB
383s Hash parameters computed in 0.114 seconds
383s Creating storage structures: 16 entries in 256 bytes space.
383s Storage structures created in: 0.000 seconds
383s 
383s Hashing NZ_GG705062.fna forwards
383s  0%......... (T -0.012 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 10%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 20%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 30%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 40%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 50%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 60%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 70%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 90%.........
383s Hashing NZ_GG705062.fna backwards
383s  0%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 10%......... (T -0.012 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 20%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 30%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 40%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 50%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 60%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 70%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 90%.........
383s Hashing NZ_GG705062.gbk forwards
383s  0%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 10%......... (T -0.012 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 20%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 30%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 40%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 50%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 60%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 70%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 90%.........
383s Hashing NZ_GG705062.gbk backwards
383s  0%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 10%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 20%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 30%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 40%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 50%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 60%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 70%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 90%.........
383s Initial hashing took: 0.061 seconds
383s Extracting anchors from hash-space.
383s  (T -0.434 seconds) ETA: Sat Mar 23 14:19:49 2024
383s  6%. (T -0.452 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 18%. (T -0.346 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 31%. (T -0.343 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 43%. (T -0.261 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 56%. (T -0.205 seconds) ETA: Sat Mar 23 14:19:50 2024
383s 68%. (T -0.115 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 81%. (T -0.042 seconds) ETA: Sat Mar 23 14:19:49 2024
383s 93%.
383s Anchor extraction completed in: 0.597 seconds
383s Total anchors: 0
383s Anchor extraction + merge time: 0.598 seconds
383s Total processing time: 0.792 seconds
383s Writing anchors...
383s Total seeds used in anchors: 16
383s Hash performance:
383s  Keys used: 16 out of 16 possible (100.00%).
383s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
383s  Average pigeons per pigeon hole: 1
384s Writing 16 repeats...Output writing finished in: 0.116 seconds
384s Total time: 0.908 seconds
384s Murasaki finished!
384s PASSED MURASAKI
384s 
384s Testing Genepare on NZ_GG705062.fna
384s 1001
384s PASSED GENEPARSE
384s 
384s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
384s Testing mbfa on NZ_GG705062.fna
384s PASSED mbfa
384s 
384s Test Murasaki on NZ_GG705063.fna
384s Verbosity level is: 0
384s Writing to: output/test
384s Pattern is: 101
384s Max usable hash bits: 27
384s Hit filter is: 0
384s Hash table type is: EcoHash
384s Hashing every: 1 base
384s Histogram detail is: 0
384s Hashing function is: 3
384s Collision profiling is: disabled
384s Repeats are: unmasked
384s Mergefilter is at: 100
384s Random seed: 1711203590 (automatic)
384s Bitscore output: on
384s Leave status records: no
384s Join neighbors is: off
384s Target memory is: 1.30 GB
384s Retain members is: true
384s Store repeatmap? yes
384s Reverse complement data is generated on the fly
384s Rifts allowed: 0
384s Fuzzy Extension: yes
384s Score by minimum pair: yes
384s Gapped anchors: no
384s Large sequence support is: enabled => seqpos is 8 bytes
384s Murasaki version 1.68.6 (LARGESEQ)
384s Loading NZ_GG705063.fna
384s Read 169631bp (165.66 KBp) in 0.009 seconds (17.9 MBp/s)
384s Done with forward strand (171684bp). Preparing reverse complement...
384s  <-> Reversing metdata.
384s Done.
384s Seq NZ_GG705063.fna loaded. 167.66 KB
384s Loading NZ_GG705063.gbk
384s Read 169631bp (165.66 KBp) in 0.010 seconds (16.1 MBp/s)
384s Done with forward strand (171684bp). Preparing reverse complement...
384s  <-> Reversing metdata.
384s Done.
384s Seq NZ_GG705063.gbk loaded. 167.66 KB
384s Sequence loading took: 0.020 seconds
384s Forward frequencies:  A:27.9294%  C:20.6572%  G:23.2847%  T:28.1287%
384s Global base frequencies:  A/T:56.0581%  C/G:43.9419%
384s Pat: 3 bases long with weight 2
384s    1 101 
384s Computing hash parameters...
384s Using 4 hashbits
384s  0%......... (T -0.102 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 10%......... (T -0.093 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 20%......... (T -0.080 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 40%......... (T -0.056 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 91%........
384s Acceptable hash function found after 1000 cycles.
384s Best uses 2/2 bases and has 0 empties from 2 inputs.
384s Score: 0.96875 (cf. worst: -4.51562)
384s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
384s Total correlation penalty: 0
384s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
384s                                             10
384s                                             ==
384s w[ 0]>>29:                                 -.C
384s w[ 0]>>30:                                  A.-
384s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
384s Ecolist (optimistic): Expcted entries per list: 16
384s Ecolist (optimistic): Minimum chunks per list: 3
384s Would take minimum 256.000000 bytes to make perfect hash.
384s Hashing 662.62 KB of sequence requires: 
384s  ~ linear (in seq length) hashing cost of 1.70 MB
384s  ~ linear (in seq length) expected anchor cost of 15.72 MB
384s Initial hash table uses: 256 bytes (4 bits, 16 entries)
384s Expected memory usage (without anchors): 1.70 MB
384s Expected memory usage (with anchors): 17.42 MB
384s Hash parameters computed in 0.114 seconds
384s Creating storage structures: 16 entries in 256 bytes space.
384s Storage structures created in: 0.000 seconds
384s 
384s Hashing NZ_GG705063.fna forwards
384s  0%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 10%......... (T -0.012 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 20%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 30%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 40%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 50%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 60%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 70%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 90%.........
384s Hashing NZ_GG705063.fna backwards
384s  0%......... (T -0.015 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 10%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 20%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 30%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 40%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 50%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 60%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 70%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 90%.........
384s Hashing NZ_GG705063.gbk forwards
384s  0%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 10%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 20%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 30%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 40%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 50%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 60%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 70%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 90%.........
384s Hashing NZ_GG705063.gbk backwards
384s  0%......... (T -0.015 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 10%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 20%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 30%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 40%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 50%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 60%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 70%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 90%.........
384s Initial hashing took: 0.065 seconds
384s Extracting anchors from hash-space.
384s  (T -0.693 seconds) ETA: Sat Mar 23 14:19:51 2024
384s  6%. (T -0.623 seconds) ETA: Sat Mar 23 14:19:51 2024
384s 18%. (T -0.428 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 31%. (T -0.352 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 43%. (T -0.280 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 56%. (T -0.202 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 68%. (T -0.114 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 81%. (T -0.044 seconds) ETA: Sat Mar 23 14:19:50 2024
384s 93%.
384s Anchor extraction completed in: 0.611 seconds
384s Total anchors: 0
384s Anchor extraction + merge time: 0.611 seconds
384s Total processing time: 0.811 seconds
384s Writing anchors...
384s Total seeds used in anchors: 16
384s Hash performance:
384s  Keys used: 16 out of 16 possible (100.00%).
384s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
384s  Average pigeons per pigeon hole: 1
385s Writing 16 repeats...Output writing finished in: 0.108 seconds
385s Total time: 0.918 seconds
385s Murasaki finished!
385s PASSED MURASAKI
385s 
385s Testing Genepare on NZ_GG705063.fna
385s 1001
385s PASSED GENEPARSE
385s 
385s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
385s Testing mbfa on NZ_GG705063.fna
385s PASSED mbfa
385s 
385s Test Murasaki on NZ_GG705064.fna
385s Verbosity level is: 0
385s Writing to: output/test
385s Pattern is: 101
385s Max usable hash bits: 27
385s Hit filter is: 0
385s Hash table type is: EcoHash
385s Hashing every: 1 base
385s Histogram detail is: 0
385s Hashing function is: 3
385s Collision profiling is: disabled
385s Repeats are: unmasked
385s Mergefilter is at: 100
385s Random seed: 1711203591 (automatic)
385s Bitscore output: on
385s Leave status records: no
385s Join neighbors is: off
385s Target memory is: 1.30 GB
385s Retain members is: true
385s Store repeatmap? yes
385s Reverse complement data is generated on the fly
385s Rifts allowed: 0
385s Fuzzy Extension: yes
385s Score by minimum pair: yes
385s Gapped anchors: no
385s Large sequence support is: enabled => seqpos is 8 bytes
385s Murasaki version 1.68.6 (LARGESEQ)
385s Loading NZ_GG705064.fna
385s Read 165027bp (161.16 KBp) in 0.007 seconds (21.3 MBp/s)
385s Done with forward strand (167894bp). Preparing reverse complement...
385s  <-> Reversing metdata.
385s Done.
385s Seq NZ_GG705064.fna loaded. 163.96 KB
385s Loading NZ_GG705064.gbk
385s Read 165027bp (161.16 KBp) in 0.010 seconds (16.5 MBp/s)
385s Done with forward strand (167894bp). Preparing reverse complement...
385s  <-> Reversing metdata.
385s Done.
385s Seq NZ_GG705064.gbk loaded. 163.96 KB
385s Sequence loading took: 0.017 seconds
385s Forward frequencies:  A:27.6058%  C:21.1172%  G:23.1338%  T:28.1433%
385s Global base frequencies:  A/T:55.7491%  C/G:44.2509%
385s Pat: 3 bases long with weight 2
385s    1 101 
385s Computing hash parameters...
385s Using 4 hashbits
385s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 91%........
385s Acceptable hash function found after 1000 cycles.
385s Best uses 2/2 bases and has 0 empties from 2 inputs.
385s Score: 0.96875 (cf. worst: -4.51562)
385s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
385s Total correlation penalty: 0
385s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
385s                                             10
385s                                             ==
385s w[ 0]>>29:                                 -.C
385s w[ 0]>>30:                                  A.-
385s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
385s Ecolist (optimistic): Expcted entries per list: 16
385s Ecolist (optimistic): Minimum chunks per list: 3
385s Would take minimum 256.000000 bytes to make perfect hash.
385s Hashing 644.64 KB of sequence requires: 
385s  ~ linear (in seq length) hashing cost of 1.65 MB
385s  ~ linear (in seq length) expected anchor cost of 15.37 MB
385s Initial hash table uses: 256 bytes (4 bits, 16 entries)
385s Expected memory usage (without anchors): 1.65 MB
385s Expected memory usage (with anchors): 17.02 MB
385s Hash parameters computed in 0.112 seconds
385s Creating storage structures: 16 entries in 256 bytes space.
385s Storage structures created in: 0.000 seconds
385s 
385s Hashing NZ_GG705064.fna forwards
385s  0%......... (T -0.012 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 10%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 20%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 30%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 40%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 50%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 60%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 70%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 90%.........
385s Hashing NZ_GG705064.fna backwards
385s  0%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 10%......... (T -0.012 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 20%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 30%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 40%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 50%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 60%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 70%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 90%.........
385s Hashing NZ_GG705064.gbk forwards
385s  0%......... (T -0.013 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 10%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 20%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 30%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 40%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 50%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 60%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 70%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 90%.........
385s Hashing NZ_GG705064.gbk backwards
385s  0%......... (T -0.026 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 10%......... (T -0.019 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 20%......... (T -0.017 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 30%......... (T -0.014 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 40%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 50%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 60%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 70%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 80%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 90%.........
385s Initial hashing took: 0.064 seconds
385s Extracting anchors from hash-space.
385s  (T -0.497 seconds) ETA: Sat Mar 23 14:19:51 2024
385s  6%. (T -0.561 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 18%. (T -0.396 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 31%. (T -0.329 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 43%. (T -0.249 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 56%. (T -0.181 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 68%. (T -0.103 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 81%. (T -0.040 seconds) ETA: Sat Mar 23 14:19:51 2024
385s 93%.
385s Anchor extraction completed in: 0.565 seconds
385s Total anchors: 0
385s Anchor extraction + merge time: 0.565 seconds
385s Total processing time: 0.759 seconds
385s Writing anchors...
385s Total seeds used in anchors: 16
385s Hash performance:
385s  Keys used: 16 out of 16 possible (100.00%).
385s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
385s  Average pigeons per pigeon hole: 1
386s Writing 16 repeats...Output writing finished in: 0.107 seconds
386s Total time: 0.867 seconds
386s Murasaki finished!
386s PASSED MURASAKI
386s 
386s Testing Genepare on NZ_GG705064.fna
386s 1001
386s PASSED GENEPARSE
386s 
386s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
386s Testing mbfa on NZ_GG705064.fna
386s PASSED mbfa
386s 
386s Test Murasaki on NZ_GG705065.fna
386s Verbosity level is: 0
386s Writing to: output/test
386s Pattern is: 101
386s Max usable hash bits: 27
386s Hit filter is: 0
386s Hash table type is: EcoHash
386s Hashing every: 1 base
386s Histogram detail is: 0
386s Hashing function is: 3
386s Collision profiling is: disabled
386s Repeats are: unmasked
386s Mergefilter is at: 100
386s Random seed: 1711203592 (automatic)
386s Bitscore output: on
386s Leave status records: no
386s Join neighbors is: off
386s Target memory is: 1.30 GB
386s Retain members is: true
386s Store repeatmap? yes
386s Reverse complement data is generated on the fly
386s Rifts allowed: 0
386s Fuzzy Extension: yes
386s Score by minimum pair: yes
386s Gapped anchors: no
386s Large sequence support is: enabled => seqpos is 8 bytes
386s Murasaki version 1.68.6 (LARGESEQ)
386s Loading NZ_GG705065.fna
386s Read 123593bp (120.70 KBp) in 0.007 seconds (16.0 MBp/s)
386s Done with forward strand (130343bp). Preparing reverse complement...
386s  <-> Reversing metdata.
386s Done.
386s Seq NZ_GG705065.fna loaded. 127.29 KB
386s Loading NZ_GG705065.gbk
386s Read 123593bp (120.70 KBp) in 0.009 seconds (13.1 MBp/s)
386s Done with forward strand (130343bp). Preparing reverse complement...
386s  <-> Reversing metdata.
386s Done.
386s Seq NZ_GG705065.gbk loaded. 127.29 KB
386s Sequence loading took: 0.017 seconds
386s Forward frequencies:  A:28.2694%  C:23.0272%  G:21.2504%  T:27.453%
386s Global base frequencies:  A/T:55.7224%  C/G:44.2776%
386s Pat: 3 bases long with weight 2
386s    1 101 
386s Computing hash parameters...
386s Using 4 hashbits
386s  0%......... (T -0.115 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 10%......... (T -0.102 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 20%......... (T -0.088 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 30%......... (T -0.074 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 40%......... (T -0.061 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 50%......... (T -0.048 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 60%......... (T -0.037 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 70%......... (T -0.025 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 91%........
386s Acceptable hash function found after 1000 cycles.
386s Best uses 2/2 bases and has 0 empties from 2 inputs.
386s Score: 0.96875 (cf. worst: -4.51562)
386s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
386s Total correlation penalty: 0
386s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
386s                                             10
386s                                             ==
386s w[ 0]>>29:                                 -.C
386s w[ 0]>>30:                                  A.-
386s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1)
386s Ecolist (optimistic): Expcted entries per list: 15
386s Ecolist (optimistic): Minimum chunks per list: 3
386s Would take minimum 256.000000 bytes to make perfect hash.
386s Hashing 482.79 KB of sequence requires: 
386s  ~ linear (in seq length) hashing cost of 1.18 MB
386s  ~ linear (in seq length) expected anchor cost of 11.93 MB
386s Initial hash table uses: 256 bytes (4 bits, 16 entries)
386s Expected memory usage (without anchors): 1.18 MB
386s Expected memory usage (with anchors): 13.11 MB
386s Hash parameters computed in 0.120 seconds
386s Creating storage structures: 16 entries in 256 bytes space.
386s Storage structures created in: 0.000 seconds
386s 
386s Hashing NZ_GG705065.fna forwards
386s  0%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 10%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 20%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 30%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 40%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 50%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 60%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 90%.........
386s Hashing NZ_GG705065.fna backwards
386s  0%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 10%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 20%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 30%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 40%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 50%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 60%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 70%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 90%.........
386s Hashing NZ_GG705065.gbk forwards
386s  0%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 10%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 20%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 30%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 40%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 50%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 60%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 90%.........
386s Hashing NZ_GG705065.gbk backwards
386s  0%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 10%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 20%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 30%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 40%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 50%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 60%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 90%.........
386s Initial hashing took: 0.046 seconds
386s Extracting anchors from hash-space.
386s  (T -0.291 seconds) ETA: Sat Mar 23 14:19:52 2024
386s  6%. (T -0.338 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 18%. (T -0.270 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 31%. (T -0.252 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 43%. (T -0.187 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 56%. (T -0.143 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 68%. (T -0.084 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 81%. (T -0.030 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 93%.
386s Anchor extraction completed in: 0.418 seconds
386s Total anchors: 0
386s Anchor extraction + merge time: 0.418 seconds
386s Total processing time: 0.601 seconds
386s Writing anchors...
386s Total seeds used in anchors: 16
386s Hash performance:
386s  Keys used: 16 out of 16 possible (100.00%).
386s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
386s  Average pigeons per pigeon hole: 1
386s Writing 16 repeats...Output writing finished in: 0.077 seconds
386s Total time: 0.678 seconds
386s Murasaki finished!
386s PASSED MURASAKI
386s 
386s Testing Genepare on NZ_GG705065.fna
386s 1001
386s PASSED GENEPARSE
386s 
386s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
386s Testing mbfa on NZ_GG705065.fna
386s PASSED mbfa
386s 
386s Test Murasaki on NZ_GG705066.fna
386s Verbosity level is: 0
386s Writing to: output/test
386s Pattern is: 101
386s Max usable hash bits: 27
386s Hit filter is: 0
386s Hash table type is: EcoHash
386s Hashing every: 1 base
386s Histogram detail is: 0
386s Hashing function is: 3
386s Collision profiling is: disabled
386s Repeats are: unmasked
386s Mergefilter is at: 100
386s Random seed: 1711203592 (automatic)
386s Bitscore output: on
386s Leave status records: no
386s Join neighbors is: off
386s Target memory is: 1.30 GB
386s Retain members is: true
386s Store repeatmap? yes
386s Reverse complement data is generated on the fly
386s Rifts allowed: 0
386s Fuzzy Extension: yes
386s Score by minimum pair: yes
386s Gapped anchors: no
386s Large sequence support is: enabled => seqpos is 8 bytes
386s Murasaki version 1.68.6 (LARGESEQ)
386s Loading NZ_GG705066.fna
386s Read 102039bp (99.65 KBp) in 0.005 seconds (19.5 MBp/s)
386s Done with forward strand (106208bp). Preparing reverse complement...
386s  <-> Reversing metdata.
386s Done.
386s Seq NZ_GG705066.fna loaded. 103.72 KB
386s Loading NZ_GG705066.gbk
386s Read 102039bp (99.65 KBp) in 0.006 seconds (17.1 MBp/s)
386s Done with forward strand (106208bp). Preparing reverse complement...
386s  <-> Reversing metdata.
386s Done.
386s Seq NZ_GG705066.gbk loaded. 103.72 KB
386s Sequence loading took: 0.011 seconds
386s Forward frequencies:  A:29.277%  C:20.206%  G:22.6257%  T:27.8913%
386s Global base frequencies:  A/T:57.1683%  C/G:42.8317%
386s Pat: 3 bases long with weight 2
386s    1 101 
386s Computing hash parameters...
386s Using 4 hashbits
386s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 20%......... (T -0.076 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 91%........
386s Acceptable hash function found after 1000 cycles.
386s Best uses 2/2 bases and has 0 empties from 2 inputs.
386s Score: 0.96875 (cf. worst: -4.51562)
386s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
386s Total correlation penalty: 0
386s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
386s                                             10
386s                                             ==
386s w[ 0]>>29:                                 -.C
386s w[ 0]>>30:                                  A.-
386s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1)
386s Ecolist (optimistic): Expcted entries per list: 15
386s Ecolist (optimistic): Minimum chunks per list: 3
386s Would take minimum 256.000000 bytes to make perfect hash.
386s Hashing 398.59 KB of sequence requires: 
386s  ~ linear (in seq length) hashing cost of 996.46 KB
386s  ~ linear (in seq length) expected anchor cost of 9.72 MB
386s Initial hash table uses: 256 bytes (4 bits, 16 entries)
386s Expected memory usage (without anchors): 996.71 KB
386s Expected memory usage (with anchors): 10.70 MB
386s Hash parameters computed in 0.110 seconds
386s Creating storage structures: 16 entries in 256 bytes space.
386s Storage structures created in: 0.000 seconds
386s 
386s Hashing NZ_GG705066.fna forwards
386s  0%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 10%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 20%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 30%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 40%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 50%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 60%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 90%.........
386s Hashing NZ_GG705066.fna backwards
386s  0%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 10%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 20%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 30%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 40%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 50%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 60%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 90%.........
386s Hashing NZ_GG705066.gbk forwards
386s  0%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 10%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 20%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 30%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 40%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 50%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 90%.........
386s Hashing NZ_GG705066.gbk backwards
386s  0%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 10%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 20%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 30%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 40%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 50%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 60%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:52 2024
386s 90%.........
386s Initial hashing took: 0.038 seconds
386s Extracting anchors from hash-space.
386s  (T -0.142 seconds) ETA: Sat Mar 23 14:19:53 2024
386s  6%. (T -0.194 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 18%. (T -0.160 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 31%. (T -0.159 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 43%. (T -0.120 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 56%. (T -0.092 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 68%. (T -0.054 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 81%. (T -0.020 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 93%.
387s Anchor extraction completed in: 0.272 seconds
387s Total anchors: 0
387s Anchor extraction + merge time: 0.272 seconds
387s Total processing time: 0.432 seconds
387s Writing anchors...
387s Total seeds used in anchors: 16
387s Hash performance:
387s  Keys used: 16 out of 16 possible (100.00%).
387s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
387s  Average pigeons per pigeon hole: 1
387s Writing 16 repeats...Output writing finished in: 0.066 seconds
387s Total time: 0.498 seconds
387s Murasaki finished!
387s PASSED MURASAKI
387s 
387s Testing Genepare on NZ_GG705066.fna
387s 1001
387s PASSED GENEPARSE
387s 
387s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
387s Testing mbfa on NZ_GG705066.fna
387s PASSED mbfa
387s 
387s Test Murasaki on NZ_GG705067.fna
387s Verbosity level is: 0
387s Writing to: output/test
387s Pattern is: 101
387s Max usable hash bits: 27
387s Hit filter is: 0
387s Hash table type is: EcoHash
387s Hashing every: 1 base
387s Histogram detail is: 0
387s Hashing function is: 3
387s Collision profiling is: disabled
387s Repeats are: unmasked
387s Mergefilter is at: 100
387s Random seed: 1711203593 (automatic)
387s Bitscore output: on
387s Leave status records: no
387s Join neighbors is: off
387s Target memory is: 1.30 GB
387s Retain members is: true
387s Store repeatmap? yes
387s Reverse complement data is generated on the fly
387s Rifts allowed: 0
387s Fuzzy Extension: yes
387s Score by minimum pair: yes
387s Gapped anchors: no
387s Large sequence support is: enabled => seqpos is 8 bytes
387s Murasaki version 1.68.6 (LARGESEQ)
387s Loading NZ_GG705067.fna
387s Read 92138bp (89.98 KBp) in 0.004 seconds (20.0 MBp/s)
387s Done with forward strand (99840bp). Preparing reverse complement...
387s  <-> Reversing metdata.
387s Done.
387s Seq NZ_GG705067.fna loaded. 97.50 KB
387s Loading NZ_GG705067.gbk
387s Read 92138bp (89.98 KBp) in 0.005 seconds (16.4 MBp/s)
387s Done with forward strand (99840bp). Preparing reverse complement...
387s  <-> Reversing metdata.
387s Done.
387s Seq NZ_GG705067.gbk loaded. 97.50 KB
387s Sequence loading took: 0.010 seconds
387s Forward frequencies:  A:28.7753%  C:20.1448%  G:22.0311%  T:29.0488%
387s Global base frequencies:  A/T:57.8241%  C/G:42.1759%
387s Pat: 3 bases long with weight 2
387s    1 101 
387s Computing hash parameters...
387s Using 4 hashbits
387s  0%......... (T -0.102 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 10%......... (T -0.089 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 20%......... (T -0.082 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 30%......... (T -0.070 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 40%......... (T -0.059 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 50%......... (T -0.047 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 91%........
387s Acceptable hash function found after 1000 cycles.
387s Best uses 2/2 bases and has 0 empties from 2 inputs.
387s Score: 0.96875 (cf. worst: -4.51562)
387s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
387s Total correlation penalty: 0
387s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
387s                                             10
387s                                             ==
387s w[ 0]>>29:                                 -.C
387s w[ 0]>>30:                                  A.-
387s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1)
387s Ecolist (optimistic): Expcted entries per list: 15
387s Ecolist (optimistic): Minimum chunks per list: 3
387s Would take minimum 256.000000 bytes to make perfect hash.
387s Hashing 359.91 KB of sequence requires: 
387s  ~ linear (in seq length) hashing cost of 899.79 KB
387s  ~ linear (in seq length) expected anchor cost of 9.14 MB
387s Initial hash table uses: 256 bytes (4 bits, 16 entries)
387s Expected memory usage (without anchors): 900.04 KB
387s Expected memory usage (with anchors): 10.02 MB
387s Hash parameters computed in 0.113 seconds
387s Creating storage structures: 16 entries in 256 bytes space.
387s Storage structures created in: 0.000 seconds
387s 
387s Hashing NZ_GG705067.fna forwards
387s  0%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 10%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 20%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 50%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 90%.........
387s Hashing NZ_GG705067.fna backwards
387s  0%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 10%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 20%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 30%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 40%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 50%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 60%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 90%.........
387s Hashing NZ_GG705067.gbk forwards
387s  0%......... (T -0.009 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 10%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 20%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 30%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 40%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 50%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 60%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 90%.........
387s Hashing NZ_GG705067.gbk backwards
387s  0%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 10%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 20%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 30%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 40%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 50%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 60%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 90%.........
387s Initial hashing took: 0.035 seconds
387s Extracting anchors from hash-space.
387s  (T -0.325 seconds) ETA: Sat Mar 23 14:19:53 2024
387s  6%. (T -0.231 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 18%. (T -0.192 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 31%. (T -0.144 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 43%. (T -0.107 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 56%. (T -0.074 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 68%. (T -0.046 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 81%. (T -0.017 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 93%.
387s Anchor extraction completed in: 0.245 seconds
387s Total anchors: 0
387s Anchor extraction + merge time: 0.245 seconds
387s Total processing time: 0.404 seconds
387s Writing anchors...
387s Total seeds used in anchors: 16
387s Hash performance:
387s  Keys used: 16 out of 16 possible (100.00%).
387s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
387s  Average pigeons per pigeon hole: 1
387s Writing 16 repeats...Output writing finished in: 0.058 seconds
387s Total time: 0.462 seconds
387s Murasaki finished!
387s PASSED MURASAKI
387s 
387s Testing Genepare on NZ_GG705067.fna
387s 1001
387s PASSED GENEPARSE
387s 
387s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
387s Testing mbfa on NZ_GG705067.fna
387s PASSED mbfa
387s 
387s Test Murasaki on NZ_GG705068.fna
387s Verbosity level is: 0
387s Writing to: output/test
387s Pattern is: 101
387s Max usable hash bits: 27
387s Hit filter is: 0
387s Hash table type is: EcoHash
387s Hashing every: 1 base
387s Histogram detail is: 0
387s Hashing function is: 3
387s Collision profiling is: disabled
387s Repeats are: unmasked
387s Mergefilter is at: 100
387s Random seed: 1711203593 (automatic)
387s Bitscore output: on
387s Leave status records: no
387s Join neighbors is: off
387s Target memory is: 1.30 GB
387s Retain members is: true
387s Store repeatmap? yes
387s Reverse complement data is generated on the fly
387s Rifts allowed: 0
387s Fuzzy Extension: yes
387s Score by minimum pair: yes
387s Gapped anchors: no
387s Large sequence support is: enabled => seqpos is 8 bytes
387s Murasaki version 1.68.6 (LARGESEQ)
387s Loading NZ_GG705068.fna
387s Read 74802bp (73.05 KBp) in 0.004 seconds (18.6 MBp/s)
387s Done with forward strand (85653bp). Preparing reverse complement...
387s  <-> Reversing metdata.
387s Done.
387s Seq NZ_GG705068.fna loaded. 83.65 KB
387s Loading NZ_GG705068.gbk
387s Read 74802bp (73.05 KBp) in 0.005 seconds (15.3 MBp/s)
387s Done with forward strand (85653bp). Preparing reverse complement...
387s  <-> Reversing metdata.
387s Done.
387s Seq NZ_GG705068.gbk loaded. 83.65 KB
387s Sequence loading took: 0.009 seconds
387s Forward frequencies:  A:30.0326%  C:20.0289%  G:19.2147%  T:30.7238%
387s Global base frequencies:  A/T:60.7564%  C/G:39.2436%
387s Pat: 3 bases long with weight 2
387s    1 101 
387s Computing hash parameters...
387s Using 4 hashbits
387s  0%......... (T -0.128 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 10%......... (T -0.101 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 20%......... (T -0.084 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 30%......... (T -0.071 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 40%......... (T -0.059 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 50%......... (T -0.047 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 91%........
387s Acceptable hash function found after 1000 cycles.
387s Best uses 2/2 bases and has 0 empties from 2 inputs.
387s Score: 0.96875 (cf. worst: -4.51562)
387s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
387s Total correlation penalty: 0
387s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
387s                                             10
387s                                             ==
387s w[ 0]>>29:                                 -.C
387s w[ 0]>>30:                                  A.-
387s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1)
387s Ecolist (optimistic): Expcted entries per list: 15
387s Ecolist (optimistic): Minimum chunks per list: 3
387s Would take minimum 256.000000 bytes to make perfect hash.
387s Hashing 292.20 KB of sequence requires: 
387s  ~ linear (in seq length) hashing cost of 730.49 KB
387s  ~ linear (in seq length) expected anchor cost of 7.84 MB
387s Initial hash table uses: 256 bytes (4 bits, 16 entries)
387s Expected memory usage (without anchors): 730.74 KB
387s Expected memory usage (with anchors): 8.56 MB
387s Hash parameters computed in 0.114 seconds
387s Creating storage structures: 16 entries in 256 bytes space.
387s Storage structures created in: 0.000 seconds
387s 
387s Hashing NZ_GG705068.fna forwards
387s  0%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 10%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 20%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 30%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 40%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 50%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 60%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 90%.........
387s Hashing NZ_GG705068.fna backwards
387s  0%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 10%......... (T -0.008 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 20%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 30%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 40%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 50%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 60%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 90%.........
387s Hashing NZ_GG705068.gbk forwards
387s  0%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 10%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 20%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 50%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 90%.........
387s Hashing NZ_GG705068.gbk backwards
387s  0%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 10%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 20%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 30%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 40%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 50%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:53 2024
387s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:53 2024
388s 70%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:53 2024
388s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:53 2024
388s 90%.........
388s Initial hashing took: 0.033 seconds
388s Extracting anchors from hash-space.
388s  (T -0.349 seconds) ETA: Sat Mar 23 14:19:54 2024
388s  6%. (T -0.253 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 18%. (T -0.205 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 31%. (T -0.145 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 43%. (T -0.109 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 56%. (T -0.074 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 68%. (T -0.046 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 81%. (T -0.017 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 93%.
388s Anchor extraction completed in: 0.247 seconds
388s Total anchors: 0
388s Anchor extraction + merge time: 0.247 seconds
388s Total processing time: 0.403 seconds
388s Writing anchors...
388s Total seeds used in anchors: 16
388s Hash performance:
388s  Keys used: 16 out of 16 possible (100.00%).
388s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
388s  Average pigeons per pigeon hole: 1
388s Writing 16 repeats...Output writing finished in: 0.046 seconds
388s Total time: 0.448 seconds
388s Murasaki finished!
388s PASSED MURASAKI
388s 
388s Testing Genepare on NZ_GG705068.fna
388s 1001
388s PASSED GENEPARSE
388s 
388s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
388s Testing mbfa on NZ_GG705068.fna
388s PASSED mbfa
388s 
388s Test Murasaki on NZ_GG705069.fna
388s Verbosity level is: 0
388s Writing to: output/test
388s Pattern is: 101
388s Max usable hash bits: 27
388s Hit filter is: 0
388s Hash table type is: EcoHash
388s Hashing every: 1 base
388s Histogram detail is: 0
388s Hashing function is: 3
388s Collision profiling is: disabled
388s Repeats are: unmasked
388s Mergefilter is at: 100
388s Random seed: 1711203594 (automatic)
388s Bitscore output: on
388s Leave status records: no
388s Join neighbors is: off
388s Target memory is: 1.30 GB
388s Retain members is: true
388s Store repeatmap? yes
388s Reverse complement data is generated on the fly
388s Rifts allowed: 0
388s Fuzzy Extension: yes
388s Score by minimum pair: yes
388s Gapped anchors: no
388s Large sequence support is: enabled => seqpos is 8 bytes
388s Murasaki version 1.68.6 (LARGESEQ)
388s Loading NZ_GG705069.fna
388s Read 49931bp (48.76 KBp) in 0.003 seconds (19.0 MBp/s)
388s Done with forward strand (54571bp). Preparing reverse complement...
388s  <-> Reversing metdata.
388s Done.
388s Seq NZ_GG705069.fna loaded. 53.29 KB
388s Loading NZ_GG705069.gbk
388s Read 49931bp (48.76 KBp) in 0.003 seconds (15.4 MBp/s)
388s Done with forward strand (54571bp). Preparing reverse complement...
388s  <-> Reversing metdata.
388s Done.
388s Seq NZ_GG705069.gbk loaded. 53.29 KB
388s Sequence loading took: 0.006 seconds
388s Forward frequencies:  A:27.7563%  C:21.4616%  G:21.8221%  T:28.96%
388s Global base frequencies:  A/T:56.7163%  C/G:43.2837%
388s Pat: 3 bases long with weight 2
388s    1 101 
388s Computing hash parameters...
388s Using 4 hashbits
388s  0%......... (T -0.096 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 10%......... (T -0.090 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 20%......... (T -0.078 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 40%......... (T -0.056 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 50%......... (T -0.045 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 91%........
388s Acceptable hash function found after 1000 cycles.
388s Best uses 2/2 bases and has 0 empties from 2 inputs.
388s Score: 0.96875 (cf. worst: -4.51562)
388s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
388s Total correlation penalty: 0
388s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
388s                                             10
388s                                             ==
388s w[ 0]>>29:                                 -.C
388s w[ 0]>>30:                                  A.-
388s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1)
388s Ecolist (optimistic): Expcted entries per list: 14
388s Ecolist (optimistic): Minimum chunks per list: 3
388s Would take minimum 256.000000 bytes to make perfect hash.
388s Hashing 195.04 KB of sequence requires: 
388s  ~ linear (in seq length) hashing cost of 463.22 KB
388s  ~ linear (in seq length) expected anchor cost of 5.00 MB
388s Initial hash table uses: 256 bytes (4 bits, 16 entries)
388s Expected memory usage (without anchors): 463.47 KB
388s Expected memory usage (with anchors): 5.45 MB
388s Hash parameters computed in 0.122 seconds
388s Creating storage structures: 16 entries in 256 bytes space.
388s Storage structures created in: 0.000 seconds
388s 
388s Hashing NZ_GG705069.fna forwards
388s  0%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 10%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 20%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 90%.........
388s Hashing NZ_GG705069.fna backwards
388s  0%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 10%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 20%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 90%.........
388s Hashing NZ_GG705069.gbk forwards
388s  0%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 10%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 20%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 90%.........
388s Hashing NZ_GG705069.gbk backwards
388s  0%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 10%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 20%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 50%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 90%.........
388s Initial hashing took: 0.021 seconds
388s Extracting anchors from hash-space.
388s  (T -0.083 seconds) ETA: Sat Mar 23 14:19:54 2024
388s  6%. (T -0.112 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 18%. (T -0.090 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 31%. (T -0.090 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 43%. (T -0.067 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 56%. (T -0.052 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 68%. (T -0.030 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 81%. (T -0.011 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 93%.
388s Anchor extraction completed in: 0.155 seconds
388s Total anchors: 0
388s Anchor extraction + merge time: 0.155 seconds
388s Total processing time: 0.305 seconds
388s Writing anchors...
388s Total seeds used in anchors: 16
388s Hash performance:
388s  Keys used: 16 out of 16 possible (100.00%).
388s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
388s  Average pigeons per pigeon hole: 1
388s Writing 16 repeats...Output writing finished in: 0.031 seconds
388s Total time: 0.336 seconds
388s Murasaki finished!
388s PASSED MURASAKI
388s 
388s Testing Genepare on NZ_GG705069.fna
388s 1001
388s PASSED GENEPARSE
388s 
388s Testing mbfa on NZ_GG705069.fna
388s PASSED mbfa
388s 
388s Test Murasaki on NZ_GG705070.fna
388s Verbosity level is: 0
388s Writing to: output/test
388s Pattern is: 101
388s Max usable hash bits: 27
388s Hit filter is: 0
388s Hash table type is: EcoHash
388s Hashing every: 1 base
388s Histogram detail is: 0
388s Hashing function is: 3
388s Collision profiling is: disabled
388s Repeats are: unmasked
388s Mergefilter is at: 100
388s Random seed: 1711203594 (automatic)
388s Bitscore output: on
388s Leave status records: no
388s Join neighbors is: off
388s Target memory is: 1.30 GB
388s Retain members is: true
388s Store repeatmap? yes
388s Reverse complement data is generated on the fly
388s Rifts allowed: 0
388s Fuzzy Extension: yes
388s Score by minimum pair: yes
388s Gapped anchors: no
388s Large sequence support is: enabled => seqpos is 8 bytes
388s Murasaki version 1.68.6 (LARGESEQ)
388s Loading NZ_GG705070.fna
388s Read 51237bp (50.04 KBp) in 0.003 seconds (19.1 MBp/s)
388s Done with forward strand (53557bp). Preparing reverse complement...
388s  <-> Reversing metdata.
388s Done.
388s Seq NZ_GG705070.fna loaded. 52.30 KB
388s Loading NZ_GG705070.gbk
388s Read 51237bp (50.04 KBp) in 0.003 seconds (16.0 MBp/s)
388s Done with forward strand (53557bp). Preparing reverse complement...
388s  <-> Reversing metdata.
388s Done.
388s Seq NZ_GG705070.gbk loaded. 52.30 KB
388s Sequence loading took: 0.006 seconds
388s Forward frequencies:  A:30.0915%  C:19.7416%  G:21.1527%  T:29.0142%
388s Global base frequencies:  A/T:59.1057%  C/G:40.8943%
388s Pat: 3 bases long with weight 2
388s    1 101 
388s Computing hash parameters...
388s Using 4 hashbits
388s  0%......... (T -0.112 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 10%.......dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
388s .. (T -0.095 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 20%......... (T -0.082 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 30%......... (T -0.071 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 40%......... (T -0.058 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 91%........
388s Acceptable hash function found after 1000 cycles.
388s Best uses 2/2 bases and has 0 empties from 2 inputs.
388s Score: 0.96875 (cf. worst: -4.51562)
388s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
388s Total correlation penalty: 0
388s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
388s                                             10
388s                                             ==
388s w[ 0]>>29:                                 -.C
388s w[ 0]>>30:                                  A.-
388s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1)
388s Ecolist (optimistic): Expcted entries per list: 14
388s Ecolist (optimistic): Minimum chunks per list: 3
388s Would take minimum 256.000000 bytes to make perfect hash.
388s Hashing 200.14 KB of sequence requires: 
388s  ~ linear (in seq length) hashing cost of 475.33 KB
388s  ~ linear (in seq length) expected anchor cost of 4.90 MB
388s Initial hash table uses: 256 bytes (4 bits, 16 entries)
388s Expected memory usage (without anchors): 475.58 KB
388s Expected memory usage (with anchors): 5.37 MB
388s Hash parameters computed in 0.114 seconds
388s Creating storage structures: 16 entries in 256 bytes space.
388s Storage structures created in: 0.000 seconds
388s 
388s Hashing NZ_GG705070.fna forwards
388s  0%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 10%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 20%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 90%.........
388s Hashing NZ_GG705070.fna backwards
388s  0%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 10%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 20%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 50%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 90%.........
388s Hashing NZ_GG705070.gbk forwards
388s  0%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 10%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 20%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 50%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 90%.........
388s Hashing NZ_GG705070.gbk backwards
388s  0%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 10%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 20%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 30%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 90%.........
388s Initial hashing took: 0.023 seconds
388s Extracting anchors from hash-space.
388s  (T -0.073 seconds) ETA: Sat Mar 23 14:19:54 2024
388s  6%. (T -0.106 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 18%. (T -0.089 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 31%. (T -0.097 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 43%. (T -0.071 seconds) ETA: Sat Mar 23 14:19:54 2024
388s 56%. (T -0.056 seconds) ETA: Sat Mar 23 14:19:55 2024
388s 68%. (T -0.033 seconds) ETA: Sat Mar 23 14:19:54 2024
389s 81%. (T -0.012 seconds) ETA: Sat Mar 23 14:19:54 2024
389s 93%.
389s Anchor extraction completed in: 0.163 seconds
389s Total anchors: 0
389s Anchor extraction + merge time: 0.163 seconds
389s Total processing time: 0.307 seconds
389s Writing anchors...
389s Total seeds used in anchors: 16
389s Hash performance:
389s  Keys used: 16 out of 16 possible (100.00%).
389s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
389s  Average pigeons per pigeon hole: 1
389s Writing 16 repeats...Output writing finished in: 0.032 seconds
389s Total time: 0.338 seconds
389s Murasaki finished!
389s PASSED MURASAKI
389s 
389s Testing Genepare on NZ_GG705070.fna
389s 1001
389s PASSED GENEPARSE
389s 
389s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
389s Testing mbfa on NZ_GG705070.fna
389s PASSED mbfa
389s 
389s Test Murasaki on NZ_GG705071.fna
389s Verbosity level is: 0
389s Writing to: output/test
389s Pattern is: 101
389s Max usable hash bits: 27
389s Hit filter is: 0
389s Hash table type is: EcoHash
389s Hashing every: 1 base
389s Histogram detail is: 0
389s Hashing function is: 3
389s Collision profiling is: disabled
389s Repeats are: unmasked
389s Mergefilter is at: 100
389s Random seed: 1711203595 (automatic)
389s Bitscore output: on
389s Leave status records: no
389s Join neighbors is: off
389s Target memory is: 1.30 GB
389s Retain members is: true
389s Store repeatmap? yes
389s Reverse complement data is generated on the fly
389s Rifts allowed: 0
389s Fuzzy Extension: yes
389s Score by minimum pair: yes
389s Gapped anchors: no
389s Large sequence support is: enabled => seqpos is 8 bytes
389s Murasaki version 1.68.6 (LARGESEQ)
389s Loading NZ_GG705071.fna
389s Read 48160bp (47.03 KBp) in 0.002 seconds (20.0 MBp/s)
389s Done with forward strand (49526bp). Preparing reverse complement...
389s  <-> Reversing metdata.
389s Done.
389s Seq NZ_GG705071.fna loaded. 48.37 KB
389s Loading NZ_GG705071.gbk
389s Read 48160bp (47.03 KBp) in 0.003 seconds (16.5 MBp/s)
389s Done with forward strand (49526bp). Preparing reverse complement...
389s  <-> Reversing metdata.
389s Done.
389s Seq NZ_GG705071.gbk loaded. 48.37 KB
389s Sequence loading took: 0.005 seconds
389s Forward frequencies:  A:33.2766%  C:16.8958%  G:18.0731%  T:31.7546%
389s Global base frequencies:  A/T:65.0311%  C/G:34.9689%
389s Pat: 3 bases long with weight 2
389s    1 101 
389s Computing hash parameters...
389s Using 4 hashbits
389s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.090 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.078 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 91%........
389s Acceptable hash function found after 1000 cycles.
389s Best uses 2/2 bases and has 0 empties from 2 inputs.
389s Score: 0.96875 (cf. worst: -4.51562)
389s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
389s Total correlation penalty: 0
389s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
389s                                             10
389s                                             ==
389s w[ 0]>>29:                                 -.C
389s w[ 0]>>30:                                  A.-
389s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1)
389s Ecolist (optimistic): Expcted entries per list: 14
389s Ecolist (optimistic): Minimum chunks per list: 3
389s Would take minimum 256.000000 bytes to make perfect hash.
389s Hashing 188.12 KB of sequence requires: 
389s  ~ linear (in seq length) hashing cost of 446.80 KB
389s  ~ linear (in seq length) expected anchor cost of 4.53 MB
389s Initial hash table uses: 256 bytes (4 bits, 16 entries)
389s Expected memory usage (without anchors): 447.05 KB
389s Expected memory usage (with anchors): 4.97 MB
389s Hash parameters computed in 0.114 seconds
389s Creating storage structures: 16 entries in 256 bytes space.
389s Storage structures created in: 0.000 seconds
389s 
389s Hashing NZ_GG705071.fna forwards
389s  0%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 90%.........
389s Hashing NZ_GG705071.fna backwards
389s  0%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 90%.........
389s Hashing NZ_GG705071.gbk forwards
389s  0%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 90%.........
389s Hashing NZ_GG705071.gbk backwards
389s  0%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 90%.........
389s Initial hashing took: 0.023 seconds
389s Extracting anchors from hash-space.
389s  (T -0.062 seconds) ETA: Sat Mar 23 14:19:55 2024
389s  6%. (T -0.099 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 18%. (T -0.077 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 31%. (T -0.095 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 43%. (T -0.070 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 56%. (T -0.058 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 68%. (T -0.032 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 81%. (T -0.011 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 93%.
389s Anchor extraction completed in: 0.157 seconds
389s Total anchors: 0
389s Anchor extraction + merge time: 0.157 seconds
389s Total processing time: 0.299 seconds
389s Writing anchors...
389s Total seeds used in anchors: 16
389s Hash performance:
389s  Keys used: 16 out of 16 possible (100.00%).
389s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
389s  Average pigeons per pigeon hole: 1
389s Writing 16 repeats...Output writing finished in: 0.030 seconds
389s Total time: 0.330 seconds
389s Murasaki finished!
389s PASSED MURASAKI
389s 
389s Testing Genepare on NZ_GG705071.fna
389s 1001
389s PASSED GENEPARSE
389s 
389s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
389s Testing mbfa on NZ_GG705071.fna
389s PASSED mbfa
389s 
389s Test Murasaki on NZ_GG705072.fna
389s Verbosity level is: 0
389s Writing to: output/test
389s Pattern is: 101
389s Max usable hash bits: 27
389s Hit filter is: 0
389s Hash table type is: EcoHash
389s Hashing every: 1 base
389s Histogram detail is: 0
389s Hashing function is: 3
389s Collision profiling is: disabled
389s Repeats are: unmasked
389s Mergefilter is at: 100
389s Random seed: 1711203595 (automatic)
389s Bitscore output: on
389s Leave status records: no
389s Join neighbors is: off
389s Target memory is: 1.30 GB
389s Retain members is: true
389s Store repeatmap? yes
389s Reverse complement data is generated on the fly
389s Rifts allowed: 0
389s Fuzzy Extension: yes
389s Score by minimum pair: yes
389s Gapped anchors: no
389s Large sequence support is: enabled => seqpos is 8 bytes
389s Murasaki version 1.68.6 (LARGESEQ)
389s Loading NZ_GG705072.fna
389s Read 25963bp (25.35 KBp) in 0.002 seconds (14.5 MBp/s)
389s Done with forward strand (35758bp). Preparing reverse complement...
389s  <-> Reversing metdata.
389s Done.
389s Seq NZ_GG705072.fna loaded. 34.92 KB
389s Loading NZ_GG705072.gbk
389s Read 25963bp (25.35 KBp) in 0.002 seconds (13.4 MBp/s)
389s Done with forward strand (35758bp). Preparing reverse complement...
389s  <-> Reversing metdata.
389s Done.
389s Seq NZ_GG705072.gbk loaded. 34.92 KB
389s Sequence loading took: 0.004 seconds
389s Forward frequencies:  A:29.6422%  C:19.6742%  G:18.2259%  T:32.4577%
389s Global base frequencies:  A/T:62.0999%  C/G:37.9001%
389s Pat: 3 bases long with weight 2
389s    1 101 
389s Computing hash parameters...
389s Using 4 hashbits
389s  0%......... (T -0.097 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.076 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 91%........
389s Acceptable hash function found after 1000 cycles.
389s Best uses 2/2 bases and has 0 empties from 2 inputs.
389s Score: 0.96875 (cf. worst: -4.51562)
389s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
389s Total correlation penalty: 0
389s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
389s                                             10
389s                                             ==
389s w[ 0]>>29:                                 -.C
389s w[ 0]>>30:                                  A.-
389s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1)
389s Ecolist (optimistic): Expcted entries per list: 13
389s Ecolist (optimistic): Minimum chunks per list: 3
389s Would take minimum 256.000000 bytes to make perfect hash.
389s Hashing 101.42 KB of sequence requires: 
389s  ~ linear (in seq length) hashing cost of 240.86 KB
389s  ~ linear (in seq length) expected anchor cost of 3.27 MB
389s Initial hash table uses: 256 bytes (4 bits, 16 entries)
389s Expected memory usage (without anchors): 241.11 KB
389s Expected memory usage (with anchors): 3.51 MB
389s Hash parameters computed in 0.112 seconds
389s Creating storage structures: 16 entries in 256 bytes space.
389s Storage structures created in: 0.000 seconds
389s 
389s Hashing NZ_GG705072.fna forwards
389s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 90%.........
389s Hashing NZ_GG705072.fna backwards
389s  0%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 90%.........
389s Hashing NZ_GG705072.gbk forwards
389s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 90%.........
389s Hashing NZ_GG705072.gbk backwards
389s  0%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.007 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 90%.........
389s Initial hashing took: 0.016 seconds
389s Extracting anchors from hash-space.
389s  (T -0.035 seconds) ETA: Sat Mar 23 14:19:55 2024
389s  6%. (T -0.052 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 18%. (T -0.039 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 31%. (T -0.043 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 43%. (T -0.033 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 56%. (T -0.027 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 68%. (T -0.015 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 81%. (T -0.005 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 93%.
389s Anchor extraction completed in: 0.075 seconds
389s Total anchors: 0
389s Anchor extraction + merge time: 0.075 seconds
389s Total processing time: 0.207 seconds
389s Writing anchors...
389s Total seeds used in anchors: 16
389s Hash performance:
389s  Keys used: 16 out of 16 possible (100.00%).
389s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
389s  Average pigeons per pigeon hole: 1
389s Writing 16 repeats...Output writing finished in: 0.015 seconds
389s Total time: 0.222 seconds
389s Murasaki finished!
389s PASSED MURASAKI
389s 
389s Testing Genepare on NZ_GG705072.fna
389s 1001
389s PASSED GENEPARSE
389s 
389s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
389s Testing mbfa on NZ_GG705072.fna
389s PASSED mbfa
389s 
389s Test Murasaki on NZ_GG705073.fna
389s Verbosity level is: 0
389s Writing to: output/test
389s Pattern is: 101
389s Max usable hash bits: 27
389s Hit filter is: 0
389s Hash table type is: EcoHash
389s Hashing every: 1 base
389s Histogram detail is: 0
389s Hashing function is: 3
389s Collision profiling is: disabled
389s Repeats are: unmasked
389s Mergefilter is at: 100
389s Random seed: 1711203595 (automatic)
389s Bitscore output: on
389s Leave status records: no
389s Join neighbors is: off
389s Target memory is: 1.30 GB
389s Retain members is: true
389s Store repeatmap? yes
389s Reverse complement data is generated on the fly
389s Rifts allowed: 0
389s Fuzzy Extension: yes
389s Score by minimum pair: yes
389s Gapped anchors: no
389s Large sequence support is: enabled => seqpos is 8 bytes
389s Murasaki version 1.68.6 (LARGESEQ)
389s Loading NZ_GG705073.fna
389s Read 29370bp (28.68 KBp) in 0.002 seconds (17.8 MBp/s)
389s Done with forward strand (32703bp). Preparing reverse complement...
389s  <-> Reversing metdata.
389s Done.
389s Seq NZ_GG705073.fna loaded. 31.94 KB
389s Loading NZ_GG705073.gbk
389s Read 29370bp (28.68 KBp) in 0.002 seconds (15.7 MBp/s)
389s Done with forward strand (32703bp). Preparing reverse complement...
389s  <-> Reversing metdata.
389s Done.
389s Seq NZ_GG705073.gbk loaded. 31.94 KB
389s Sequence loading took: 0.004 seconds
389s Forward frequencies:  A:31.0964%  C:18.2635%  G:17.6166%  T:33.0235%
389s Global base frequencies:  A/T:64.1199%  C/G:35.8801%
389s Pat: 3 bases long with weight 2
389s    1 101 
389s Computing hash parameters...
389s Using 4 hashbits
389s  0%......... (T -0.099 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 91%........
389s Acceptable hash function found after 1000 cycles.
389s Best uses 2/2 bases and has 0 empties from 2 inputs.
389s Score: 0.96875 (cf. worst: -4.51562)
389s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
389s Total correlation penalty: 0
389s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
389s                                             10
389s                                             ==
389s w[ 0]>>29:                                 -.C
389s w[ 0]>>30:                                  A.-
389s Ecolist (optimistic): (seqbits: 2 idxbits: 16 minBlocks: 1 initblocks: 1)
389s Ecolist (optimistic): Expcted entries per list: 13
389s Ecolist (optimistic): Minimum chunks per list: 3
389s Would take minimum 256.000000 bytes to make perfect hash.
389s Hashing 114.73 KB of sequence requires: 
389s  ~ linear (in seq length) hashing cost of 258.13 KB
389s  ~ linear (in seq length) expected anchor cost of 2.99 MB
389s Initial hash table uses: 256 bytes (4 bits, 16 entries)
389s Expected memory usage (without anchors): 258.38 KB
389s Expected memory usage (with anchors): 3.25 MB
389s Hash parameters computed in 0.109 seconds
389s Creating storage structures: 16 entries in 256 bytes space.
389s Storage structures created in: 0.000 seconds
389s 
389s Hashing NZ_GG705073.fna forwards
389s  0%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 90%.........
389s Hashing NZ_GG705073.fna backwards
389s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 90%.........
389s Hashing NZ_GG705073.gbk forwards
389s  0%......... (T -0.006 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 90%.........
389s Hashing NZ_GG705073.gbk backwards
389s  0%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 10%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 20%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 90%.........
389s Initial hashing took: 0.015 seconds
389s Extracting anchors from hash-space.
389s  (T -0.037 seconds) ETA: Sat Mar 23 14:19:55 2024
389s  6%. (T -0.056 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 18%. (T -0.043 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 31%. (T -0.050 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 43%. (T -0.037 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 56%. (T -0.031 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 68%. (T -0.017 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 81%. (T -0.006 seconds) ETA: Sat Mar 23 14:19:55 2024
389s 93%.
389s Anchor extraction completed in: 0.086 seconds
389s Total anchors: 0
389s Anchor extraction + merge time: 0.086 seconds
389s Total processing time: 0.214 seconds
389s Writing anchors...
389s Total seeds used in anchors: 16
389s Hash performance:
389s  Keys used: 16 out of 16 possible (100.00%).
389s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
389s  Average pigeons per pigeon hole: 1
389s Writing 16 repeats...Output writing finished in: 0.018 seconds
389s Total time: 0.233 seconds
389s Murasaki finished!
389s PASSED MURASAKI
389s 
389s Testing Genepare on NZ_GG705073.fna
389s 1001
389s PASSED GENEPARSE
389s 
390s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
390s Testing mbfa on NZ_GG705073.fna
390s PASSED mbfa
390s 
390s Test Murasaki on NZ_GG705074.fna
390s Verbosity level is: 0
390s Writing to: output/test
390s Pattern is: 101
390s Max usable hash bits: 27
390s Hit filter is: 0
390s Hash table type is: EcoHash
390s Hashing every: 1 base
390s Histogram detail is: 0
390s Hashing function is: 3
390s Collision profiling is: disabled
390s Repeats are: unmasked
390s Mergefilter is at: 100
390s Random seed: 1711203595 (automatic)
390s Bitscore output: on
390s Leave status records: no
390s Join neighbors is: off
390s Target memory is: 1.30 GB
390s Retain members is: true
390s Store repeatmap? yes
390s Reverse complement data is generated on the fly
390s Rifts allowed: 0
390s Fuzzy Extension: yes
390s Score by minimum pair: yes
390s Gapped anchors: no
390s Large sequence support is: enabled => seqpos is 8 bytes
390s Murasaki version 1.68.6 (LARGESEQ)
390s Loading NZ_GG705074.fna
390s Read 27463bp (26.82 KBp) in 0.001 seconds (18.7 MBp/s)
390s Done with forward strand (27739bp). Preparing reverse complement...
390s  <-> Reversing metdata.
390s Done.
390s Seq NZ_GG705074.fna loaded. 27.09 KB
390s Loading NZ_GG705074.gbk
390s Read 27463bp (26.82 KBp) in 0.002 seconds (16.1 MBp/s)
390s Done with forward strand (27739bp). Preparing reverse complement...
390s  <-> Reversing metdata.
390s Done.
390s Seq NZ_GG705074.gbk loaded. 27.09 KB
390s Sequence loading took: 0.003 seconds
390s Forward frequencies:  A:29.7418%  C:22.6122%  G:19.164%  T:28.482%
390s Global base frequencies:  A/T:58.2238%  C/G:41.7762%
390s Pat: 3 bases long with weight 2
390s    1 101 
390s Computing hash parameters...
390s Using 4 hashbits
390s  0%......... (T -0.101 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.089 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 91%........
390s Acceptable hash function found after 1000 cycles.
390s Best uses 2/2 bases and has 0 empties from 2 inputs.
390s Score: 0.96875 (cf. worst: -4.51562)
390s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
390s Total correlation penalty: 0
390s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
390s                                             10
390s                                             ==
390s w[ 0]>>29:                                 -.C
390s w[ 0]>>30:                                  A.-
390s Ecolist (optimistic): (seqbits: 2 idxbits: 16 minBlocks: 1 initblocks: 1)
390s Ecolist (optimistic): Expcted entries per list: 13
390s Ecolist (optimistic): Minimum chunks per list: 3
390s Would take minimum 256.000000 bytes to make perfect hash.
390s Hashing 107.28 KB of sequence requires: 
390s  ~ linear (in seq length) hashing cost of 241.37 KB
390s  ~ linear (in seq length) expected anchor cost of 2.54 MB
390s Initial hash table uses: 256 bytes (4 bits, 16 entries)
390s Expected memory usage (without anchors): 241.62 KB
390s Expected memory usage (with anchors): 2.78 MB
390s Hash parameters computed in 0.110 seconds
390s Creating storage structures: 16 entries in 256 bytes space.
390s Storage structures created in: 0.000 seconds
390s 
390s Hashing NZ_GG705074.fna forwards
390s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705074.fna backwards
390s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705074.gbk forwards
390s  0%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705074.gbk backwards
390s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Initial hashing took: 0.009 seconds
390s Extracting anchors from hash-space.
390s  (T -0.054 seconds) ETA: Sat Mar 23 14:19:56 2024
390s  6%. (T -0.062 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 18%. (T -0.046 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 31%. (T -0.046 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 43%. (T -0.035 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 56%. (T -0.027 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 68%. (T -0.015 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 81%. (T -0.006 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 93%.
390s Anchor extraction completed in: 0.078 seconds
390s Total anchors: 0
390s Anchor extraction + merge time: 0.078 seconds
390s Total processing time: 0.201 seconds
390s Writing anchors...
390s Total seeds used in anchors: 16
390s Hash performance:
390s  Keys used: 16 out of 16 possible (100.00%).
390s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
390s  Average pigeons per pigeon hole: 1
390s Writing 16 repeats...Output writing finished in: 0.016 seconds
390s Total time: 0.217 seconds
390s Murasaki finished!
390s PASSED MURASAKI
390s 
390s Testing Genepare on NZ_GG705074.fna
390s 1001
390s PASSED GENEPARSE
390s 
390s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
390s Testing mbfa on NZ_GG705074.fna
390s PASSED mbfa
390s 
390s Test Murasaki on NZ_GG705075.fna
390s Verbosity level is: 0
390s Writing to: output/test
390s Pattern is: 101
390s Max usable hash bits: 27
390s Hit filter is: 0
390s Hash table type is: EcoHash
390s Hashing every: 1 base
390s Histogram detail is: 0
390s Hashing function is: 3
390s Collision profiling is: disabled
390s Repeats are: unmasked
390s Mergefilter is at: 100
390s Random seed: 1711203596 (automatic)
390s Bitscore output: on
390s Leave status records: no
390s Join neighbors is: off
390s Target memory is: 1.30 GB
390s Retain members is: true
390s Store repeatmap? yes
390s Reverse complement data is generated on the fly
390s Rifts allowed: 0
390s Fuzzy Extension: yes
390s Score by minimum pair: yes
390s Gapped anchors: no
390s Large sequence support is: enabled => seqpos is 8 bytes
390s Murasaki version 1.68.6 (LARGESEQ)
390s Loading NZ_GG705075.fna
390s Read 10982bp (10.72 KBp) in 0.001 seconds (14.1 MBp/s)
390s Done with forward strand (12466bp). Preparing reverse complement...
390s  <-> Reversing metdata.
390s Done.
390s Seq NZ_GG705075.fna loaded. 12.17 KB
390s Loading NZ_GG705075.gbk
390s Read 10982bp (10.72 KBp) in 0.001 seconds (12.9 MBp/s)
390s Done with forward strand (12466bp). Preparing reverse complement...
390s  <-> Reversing metdata.
390s Done.
390s Seq NZ_GG705075.gbk loaded. 12.17 KB
390s Sequence loading took: 0.002 seconds
390s Forward frequencies:  A:32.1526%  C:18.9765%  G:18.4484%  T:30.4225%
390s Global base frequencies:  A/T:62.5751%  C/G:37.4249%
390s Pat: 3 bases long with weight 2
390s    1 101 
390s Computing hash parameters...
390s Using 4 hashbits
390s  0%......... (T -0.103 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.091 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.083 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.070 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.059 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.047 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 91%........
390s Acceptable hash function found after 1000 cycles.
390s Best uses 2/2 bases and has 0 empties from 2 inputs.
390s Score: 0.96875 (cf. worst: -4.51562)
390s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
390s Total correlation penalty: 0
390s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
390s                                             10
390s                                             ==
390s w[ 0]>>29:                                 -.C
390s w[ 0]>>30:                                  A.-
390s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
390s Ecolist (optimistic): Expcted entries per list: 12
390s Ecolist (optimistic): Minimum chunks per list: 3
390s Would take minimum 256.000000 bytes to make perfect hash.
390s Hashing 42.90 KB of sequence requires: 
390s  ~ linear (in seq length) hashing cost of 91.16 KB
390s  ~ linear (in seq length) expected anchor cost of 1.14 MB
390s Initial hash table uses: 256 bytes (4 bits, 16 entries)
390s Expected memory usage (without anchors): 91.41 KB
390s Expected memory usage (with anchors): 1.23 MB
390s Hash parameters computed in 0.118 seconds
390s Creating storage structures: 16 entries in 256 bytes space.
390s Storage structures created in: 0.000 seconds
390s 
390s Hashing NZ_GG705075.fna forwards
390s  0%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705075.fna backwards
390s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705075.gbk forwards
390s  0%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705075.gbk backwards
390s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Initial hashing took: 0.008 seconds
390s Extracting anchors from hash-space.
390s  (T -0.050 seconds) ETA: Sat Mar 23 14:19:56 2024
390s  6%. (T -0.028 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 18%. (T -0.025 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 31%. (T -0.018 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 43%. (T -0.014 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 56%. (T -0.009 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 68%. (T -0.006 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 81%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 93%.
390s Anchor extraction completed in: 0.030 seconds
390s Total anchors: 0
390s Anchor extraction + merge time: 0.030 seconds
390s Total processing time: 0.159 seconds
390s Writing anchors...
390s Total seeds used in anchors: 16
390s Hash performance:
390s  Keys used: 16 out of 16 possible (100.00%).
390s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
390s  Average pigeons per pigeon hole: 1
390s Writing 16 repeats...Output writing finished in: 0.007 seconds
390s Total time: 0.166 seconds
390s Murasaki finished!
390s PASSED MURASAKI
390s 
390s Testing Genepare on NZ_GG705075.fna
390s 1001
390s PASSED GENEPARSE
390s 
390s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
390s Testing mbfa on NZ_GG705075.fna
390s PASSED mbfa
390s 
390s Test Murasaki on NZ_GG705076.fna
390s Verbosity level is: 0
390s Writing to: output/test
390s Pattern is: 101
390s Max usable hash bits: 27
390s Hit filter is: 0
390s Hash table type is: EcoHash
390s Hashing every: 1 base
390s Histogram detail is: 0
390s Hashing function is: 3
390s Collision profiling is: disabled
390s Repeats are: unmasked
390s Mergefilter is at: 100
390s Random seed: 1711203596 (automatic)
390s Bitscore output: on
390s Leave status records: no
390s Join neighbors is: off
390s Target memory is: 1.30 GB
390s Retain members is: true
390s Store repeatmap? yes
390s Reverse complement data is generated on the fly
390s Rifts allowed: 0
390s Fuzzy Extension: yes
390s Score by minimum pair: yes
390s Gapped anchors: no
390s Large sequence support is: enabled => seqpos is 8 bytes
390s Murasaki version 1.68.6 (LARGESEQ)
390s Loading NZ_GG705076.fna
390s Read 9733bp (9.50 KBp) in 0.001 seconds (13.5 MBp/s)
390s Done with forward strand (9753bp). Preparing reverse complement...
390s  <-> Reversing metdata.
390s Done.
390s Seq NZ_GG705076.fna loaded. 9.52 KB
390s Loading NZ_GG705076.gbk
390s Read 9733bp (9.50 KBp) in 0.001 seconds (14.3 MBp/s)
390s Done with forward strand (9753bp). Preparing reverse complement...
390s  <-> Reversing metdata.
390s Done.
390s Seq NZ_GG705076.gbk loaded. 9.52 KB
390s Sequence loading took: 0.002 seconds
390s Forward frequencies:  A:30.114%  C:17.3122%  G:17.2917%  T:35.282%
390s Global base frequencies:  A/T:65.3961%  C/G:34.6039%
390s Pat: 3 bases long with weight 2
390s    1 101 
390s Computing hash parameters...
390s Using 4 hashbits
390s  0%......... (T -0.099 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.098 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.083 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.070 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.057 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 91%........
390s Acceptable hash function found after 1000 cycles.
390s Best uses 2/2 bases and has 0 empties from 2 inputs.
390s Score: 0.96875 (cf. worst: -4.51562)
390s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
390s Total correlation penalty: 0
390s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
390s                                             10
390s                                             ==
390s w[ 0]>>29:                                 -.C
390s w[ 0]>>30:                                  A.-
390s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
390s Ecolist (optimistic): Expcted entries per list: 12
390s Ecolist (optimistic): Minimum chunks per list: 3
390s Would take minimum 256.000000 bytes to make perfect hash.
390s Hashing 38.02 KB of sequence requires: 
390s  ~ linear (in seq length) hashing cost of 80.78 KB
390s  ~ linear (in seq length) expected anchor cost of 914.34 KB
390s Initial hash table uses: 256 bytes (4 bits, 16 entries)
390s Expected memory usage (without anchors): 81.03 KB
390s Expected memory usage (with anchors): 995.38 KB
390s Hash parameters computed in 0.114 seconds
390s Creating storage structures: 16 entries in 256 bytes space.
390s Storage structures created in: 0.000 seconds
390s 
390s Hashing NZ_GG705076.fna forwards
390s  0%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705076.fna backwards
390s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705076.gbk forwards
390s  0%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705076.gbk backwards
390s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Initial hashing took: 0.005 seconds
390s Extracting anchors from hash-space.
390s  (T -0.044 seconds) ETA: Sat Mar 23 14:19:56 2024
390s  6%. (T -0.026 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 18%. (T -0.022 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 31%. (T -0.015 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 43%. (T -0.011 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 56%. (T -0.007 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 68%. (T -0.005 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 81%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 93%.
390s Anchor extraction completed in: 0.026 seconds
390s Total anchors: 0
390s Anchor extraction + merge time: 0.026 seconds
390s Total processing time: 0.148 seconds
390s Writing anchors...
390s Total seeds used in anchors: 16
390s Hash performance:
390s  Keys used: 16 out of 16 possible (100.00%).
390s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
390s  Average pigeons per pigeon hole: 1
390s Writing 16 repeats...Output writing finished in: 0.006 seconds
390s Total time: 0.154 seconds
390s Murasaki finished!
390s PASSED MURASAKI
390s 
390s Testing Genepare on NZ_GG705076.fna
390s 1001
390s PASSED GENEPARSE
390s 
390s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
390s Testing mbfa on NZ_GG705076.fna
390s PASSED mbfa
390s 
390s Test Murasaki on NZ_GG705077.fna
390s Verbosity level is: 0
390s Writing to: output/test
390s Pattern is: 101
390s Max usable hash bits: 27
390s Hit filter is: 0
390s Hash table type is: EcoHash
390s Hashing every: 1 base
390s Histogram detail is: 0
390s Hashing function is: 3
390s Collision profiling is: disabled
390s Repeats are: unmasked
390s Mergefilter is at: 100
390s Random seed: 1711203596 (automatic)
390s Bitscore output: on
390s Leave status records: no
390s Join neighbors is: off
390s Target memory is: 1.30 GB
390s Retain members is: true
390s Store repeatmap? yes
390s Reverse complement data is generated on the fly
390s Rifts allowed: 0
390s Fuzzy Extension: yes
390s Score by minimum pair: yes
390s Gapped anchors: no
390s Large sequence support is: enabled => seqpos is 8 bytes
390s Murasaki version 1.68.6 (LARGESEQ)
390s Loading NZ_GG705077.fna
390s Read 9579bp (9.35 KBp) in 0.001 seconds (14.1 MBp/s)
390s Done with forward strand (9752bp). Preparing reverse complement...
390s  <-> Reversing metdata.
390s Done.
390s Seq NZ_GG705077.fna loaded. 9.52 KB
390s Loading NZ_GG705077.gbk
390s Read 9579bp (9.35 KBp) in 0.001 seconds (14.1 MBp/s)
390s Done with forward strand (9752bp). Preparing reverse complement...
390s  <-> Reversing metdata.
390s Done.
390s Seq NZ_GG705077.gbk loaded. 9.52 KB
390s Sequence loading took: 0.002 seconds
390s Forward frequencies:  A:31.0366%  C:19.2713%  G:18.2169%  T:31.4751%
390s Global base frequencies:  A/T:62.5117%  C/G:37.4883%
390s Pat: 3 bases long with weight 2
390s    1 101 
390s Computing hash parameters...
390s Using 4 hashbits
390s  0%......... (T -0.110 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.106 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.088 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.073 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.061 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.048 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 91%........
390s Acceptable hash function found after 1000 cycles.
390s Best uses 2/2 bases and has 0 empties from 2 inputs.
390s Score: 0.96875 (cf. worst: -4.51562)
390s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
390s Total correlation penalty: 0
390s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
390s                                             10
390s                                             ==
390s w[ 0]>>29:                                 -.C
390s w[ 0]>>30:                                  A.-
390s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
390s Ecolist (optimistic): Expcted entries per list: 12
390s Ecolist (optimistic): Minimum chunks per list: 3
390s Would take minimum 256.000000 bytes to make perfect hash.
390s Hashing 37.42 KB of sequence requires: 
390s  ~ linear (in seq length) hashing cost of 79.50 KB
390s  ~ linear (in seq length) expected anchor cost of 914.25 KB
390s Initial hash table uses: 256 bytes (4 bits, 16 entries)
390s Expected memory usage (without anchors): 79.75 KB
390s Expected memory usage (with anchors): 994.00 KB
390s Hash parameters computed in 0.116 seconds
390s Creating storage structures: 16 entries in 256 bytes space.
390s Storage structures created in: 0.000 seconds
390s 
390s Hashing NZ_GG705077.fna forwards
390s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705077.fna backwards
390s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705077.gbk forwards
390s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705077.gbk backwards
390s  0%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Initial hashing took: 0.009 seconds
390s Extracting anchors from hash-space.
390s  (T -0.040 seconds) ETA: Sat Mar 23 14:19:56 2024
390s  6%. (T -0.024 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 18%. (T -0.021 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 31%. (T -0.014 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 43%. (T -0.011 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 56%. (T -0.007 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 68%. (T -0.004 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 81%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 93%.
390s Anchor extraction completed in: 0.025 seconds
390s Total anchors: 0
390s Anchor extraction + merge time: 0.025 seconds
390s Total processing time: 0.152 seconds
390s Writing anchors...
390s Total seeds used in anchors: 16
390s Hash performance:
390s  Keys used: 16 out of 16 possible (100.00%).
390s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
390s  Average pigeons per pigeon hole: 1
390s Writing 16 repeats...Output writing finished in: 0.006 seconds
390s Total time: 0.158 seconds
390s Murasaki finished!
390s PASSED MURASAKI
390s 
390s Testing Genepare on NZ_GG705077.fna
390s 1001
390s PASSED GENEPARSE
390s 
390s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
390s Testing mbfa on NZ_GG705077.fna
390s PASSED mbfa
390s 
390s Test Murasaki on NZ_GG705078.fna
390s Verbosity level is: 0
390s Writing to: output/test
390s Pattern is: 101
390s Max usable hash bits: 27
390s Hit filter is: 0
390s Hash table type is: EcoHash
390s Hashing every: 1 base
390s Histogram detail is: 0
390s Hashing function is: 3
390s Collision profiling is: disabled
390s Repeats are: unmasked
390s Mergefilter is at: 100
390s Random seed: 1711203596 (automatic)
390s Bitscore output: on
390s Leave status records: no
390s Join neighbors is: off
390s Target memory is: 1.30 GB
390s Retain members is: true
390s Store repeatmap? yes
390s Reverse complement data is generated on the fly
390s Rifts allowed: 0
390s Fuzzy Extension: yes
390s Score by minimum pair: yes
390s Gapped anchors: no
390s Large sequence support is: enabled => seqpos is 8 bytes
390s Murasaki version 1.68.6 (LARGESEQ)
390s Loading NZ_GG705078.fna
390s Read 9549bp (9.33 KBp) in 0.001 seconds (14.3 MBp/s)
390s Done with forward strand (9578bp). Preparing reverse complement...
390s  <-> Reversing metdata.
390s Done.
390s Seq NZ_GG705078.fna loaded. 9.35 KB
390s Loading NZ_GG705078.gbk
390s Read 9549bp (9.33 KBp) in 0.001 seconds (14.7 MBp/s)
390s Done with forward strand (9578bp). Preparing reverse complement...
390s  <-> Reversing metdata.
390s Done.
390s Seq NZ_GG705078.gbk loaded. 9.35 KB
390s Sequence loading took: 0.001 seconds
390s Forward frequencies:  A:29.6366%  C:18.8816%  G:17.583%  T:33.8988%
390s Global base frequencies:  A/T:63.5354%  C/G:36.4646%
390s Pat: 3 bases long with weight 2
390s    1 101 
390s Computing hash parameters...
390s Using 4 hashbits
390s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.089 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.078 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.056 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 91%........
390s Acceptable hash function found after 1000 cycles.
390s Best uses 2/2 bases and has 0 empties from 2 inputs.
390s Score: 0.96875 (cf. worst: -4.51562)
390s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
390s Total correlation penalty: 0
390s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
390s                                             10
390s                                             ==
390s w[ 0]>>29:                                 -.C
390s w[ 0]>>30:                                  A.-
390s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
390s Ecolist (optimistic): Expcted entries per list: 12
390s Ecolist (optimistic): Minimum chunks per list: 3
390s Would take minimum 256.000000 bytes to make perfect hash.
390s Hashing 37.30 KB of sequence requires: 
390s  ~ linear (in seq length) hashing cost of 79.26 KB
390s  ~ linear (in seq length) expected anchor cost of 897.94 KB
390s Initial hash table uses: 256 bytes (4 bits, 16 entries)
390s Expected memory usage (without anchors): 79.51 KB
390s Expected memory usage (with anchors): 977.44 KB
390s Hash parameters computed in 0.110 seconds
390s Creating storage structures: 16 entries in 256 bytes space.
390s Storage structures created in: 0.000 seconds
390s 
390s Hashing NZ_GG705078.fna forwards
390s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705078.fna backwards
390s  0%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705078.gbk forwards
390s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Hashing NZ_GG705078.gbk backwards
390s  0%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 90%.........
390s Initial hashing took: 0.007 seconds
390s Extracting anchors from hash-space.
390s  (T -0.038 seconds) ETA: Sat Mar 23 14:19:56 2024
390s  6%. (T -0.023 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 18%. (T -0.020 seconds) ETA: Sat Mar 23 14:19:56 2024
390s 31%. (T -0.014 seconds) ETA: Sat Mar 23 14:19:56 2024
391s 43%. (T -0.011 seconds) ETA: Sat Mar 23 14:19:56 2024
391s 56%. (T -0.007 seconds) ETA: Sat Mar 23 14:19:56 2024
391s 68%. (T -0.004 seconds) ETA: Sat Mar 23 14:19:56 2024
391s 81%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:56 2024
391s 93%.
391s Anchor extraction completed in: 0.025 seconds
391s Total anchors: 0
391s Anchor extraction + merge time: 0.025 seconds
391s Total processing time: 0.143 seconds
391s Writing anchors...
391s Total seeds used in anchors: 16
391s Hash performance:
391s  Keys used: 16 out of 16 possible (100.00%).
391s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
391s  Average pigeons per pigeon hole: 1
391s Writing 16 repeats...Output writing finished in: 0.006 seconds
391s Total time: 0.149 seconds
391s Murasaki finished!
391s PASSED MURASAKI
391s 
391s Testing Genepare on NZ_GG705078.fna
391s 1001
391s PASSED GENEPARSE
391s 
391s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
391s Testing mbfa on NZ_GG705078.fna
391s PASSED mbfa
391s 
391s Test Murasaki on NZ_GG705079.fna
391s Verbosity level is: 0
391s Writing to: output/test
391s Pattern is: 101
391s Max usable hash bits: 27
391s Hit filter is: 0
391s Hash table type is: EcoHash
391s Hashing every: 1 base
391s Histogram detail is: 0
391s Hashing function is: 3
391s Collision profiling is: disabled
391s Repeats are: unmasked
391s Mergefilter is at: 100
391s Random seed: 1711203597 (automatic)
391s Bitscore output: on
391s Leave status records: no
391s Join neighbors is: off
391s Target memory is: 1.30 GB
391s Retain members is: true
391s Store repeatmap? yes
391s Reverse complement data is generated on the fly
391s Rifts allowed: 0
391s Fuzzy Extension: yes
391s Score by minimum pair: yes
391s Gapped anchors: no
391s Large sequence support is: enabled => seqpos is 8 bytes
391s Murasaki version 1.68.6 (LARGESEQ)
391s Loading NZ_GG705079.fna
391s Read 7815bp (7.63 KBp) in 0.001 seconds (11.3 MBp/s)
391s Done with forward strand (9392bp). Preparing reverse complement...
391s  <-> Reversing metdata.
391s Done.
391s Seq NZ_GG705079.fna loaded. 9.17 KB
391s Loading NZ_GG705079.gbk
391s Read 7815bp (7.63 KBp) in 0.001 seconds (11.8 MBp/s)
391s Done with forward strand (9392bp). Preparing reverse complement...
391s  <-> Reversing metdata.
391s Done.
391s Seq NZ_GG705079.gbk loaded. 9.17 KB
391s Sequence loading took: 0.002 seconds
391s Forward frequencies:  A:32.1433%  C:19.1555%  G:17.3512%  T:31.35%
391s Global base frequencies:  A/T:63.4933%  C/G:36.5067%
391s Pat: 3 bases long with weight 2
391s    1 101 
391s Computing hash parameters...
391s Using 4 hashbits
391s  0%......... (T -0.098 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 91%........
391s Acceptable hash function found after 1000 cycles.
391s Best uses 2/2 bases and has 0 empties from 2 inputs.
391s Score: 0.96875 (cf. worst: -4.51562)
391s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
391s Total correlation penalty: 0
391s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
391s                                             10
391s                                             ==
391s w[ 0]>>29:                                 -.C
391s w[ 0]>>30:                                  A.-
391s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
391s Ecolist (optimistic): Expcted entries per list: 11
391s Ecolist (optimistic): Minimum chunks per list: 3
391s Would take minimum 256.000000 bytes to make perfect hash.
391s Hashing 30.53 KB of sequence requires: 
391s  ~ linear (in seq length) hashing cost of 64.86 KB
391s  ~ linear (in seq length) expected anchor cost of 880.50 KB
391s Initial hash table uses: 256 bytes (4 bits, 16 entries)
391s Expected memory usage (without anchors): 65.11 KB
391s Expected memory usage (with anchors): 945.61 KB
391s Hash parameters computed in 0.109 seconds
391s Creating storage structures: 16 entries in 256 bytes space.
391s Storage structures created in: 0.000 seconds
391s 
391s Hashing NZ_GG705079.fna forwards
391s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705079.fna backwards
391s  0%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705079.gbk forwards
391s  0%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705079.gbk backwards
391s  0%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Initial hashing took: 0.006 seconds
391s Extracting anchors from hash-space.
391s  (T -0.018 seconds) ETA: Sat Mar 23 14:19:57 2024
391s  6%. (T -0.022 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 18%. (T -0.015 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 31%. (T -0.011 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 43%. (T -0.008 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 56%. (T -0.006 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 68%. (T -0.003 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 81%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 93%.
391s Anchor extraction completed in: 0.019 seconds
391s Total anchors: 0
391s Anchor extraction + merge time: 0.019 seconds
391s Total processing time: 0.136 seconds
391s Writing anchors...
391s Total seeds used in anchors: 16
391s Hash performance:
391s  Keys used: 16 out of 16 possible (100.00%).
391s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
391s  Average pigeons per pigeon hole: 1
391s Writing 16 repeats...Output writing finished in: 0.005 seconds
391s Total time: 0.141 seconds
391s Murasaki finished!
391s PASSED MURASAKI
391s 
391s Testing Genepare on NZ_GG705079.fna
391s 1001
391s PASSED GENEPARSE
391s 
391s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
391s Testing mbfa on NZ_GG705079.fna
391s PASSED mbfa
391s 
391s Test Murasaki on NZ_GG705080.fna
391s Verbosity level is: 0
391s Writing to: output/test
391s Pattern is: 101
391s Max usable hash bits: 27
391s Hit filter is: 0
391s Hash table type is: EcoHash
391s Hashing every: 1 base
391s Histogram detail is: 0
391s Hashing function is: 3
391s Collision profiling is: disabled
391s Repeats are: unmasked
391s Mergefilter is at: 100
391s Random seed: 1711203597 (automatic)
391s Bitscore output: on
391s Leave status records: no
391s Join neighbors is: off
391s Target memory is: 1.30 GB
391s Retain members is: true
391s Store repeatmap? yes
391s Reverse complement data is generated on the fly
391s Rifts allowed: 0
391s Fuzzy Extension: yes
391s Score by minimum pair: yes
391s Gapped anchors: no
391s Large sequence support is: enabled => seqpos is 8 bytes
391s Murasaki version 1.68.6 (LARGESEQ)
391s Loading NZ_GG705080.fna
391s Read 6711bp (6.55 KBp) in 0.001 seconds (10.5 MBp/s)
391s Done with forward strand (6711bp). Preparing reverse complement...
391s  <-> Reversing metdata.
391s Done.
391s Seq NZ_GG705080.fna loaded. 6.55 KB
391s Loading NZ_GG705080.gbk
391s Read 6711bp (6.55 KBp) in 0.001 seconds (12.7 MBp/s)
391s Done with forward strand (6711bp). Preparing reverse complement...
391s  <-> Reversing metdata.
391s Done.
391s Seq NZ_GG705080.gbk loaded. 6.55 KB
391s Sequence loading took: 0.001 seconds
391s Forward frequencies:  A:28.3415%  C:19.4308%  G:19.5202%  T:32.7075%
391s Global base frequencies:  A/T:61.049%  C/G:38.951%
391s Pat: 3 bases long with weight 2
391s    1 101 
391s Computing hash parameters...
391s Using 4 hashbits
391s  0%......... (T -0.096 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.087 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.076 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.065 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 91%........
391s Acceptable hash function found after 1000 cycles.
391s Best uses 2/2 bases and has 0 empties from 2 inputs.
391s Score: 0.96875 (cf. worst: -4.51562)
391s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
391s Total correlation penalty: 0
391s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
391s                                             10
391s                                             ==
391s w[ 0]>>29:                                 -.C
391s w[ 0]>>30:                                  A.-
391s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
391s Ecolist (optimistic): Expcted entries per list: 11
391s Ecolist (optimistic): Minimum chunks per list: 4
391s Would take minimum 256.000000 bytes to make perfect hash.
391s Hashing 26.21 KB of sequence requires: 
391s  ~ linear (in seq length) hashing cost of 52.42 KB
391s  ~ linear (in seq length) expected anchor cost of 629.16 KB
391s Initial hash table uses: 256 bytes (4 bits, 16 entries)
391s Expected memory usage (without anchors): 52.67 KB
391s Expected memory usage (with anchors): 681.83 KB
391s Hash parameters computed in 0.112 seconds
391s Creating storage structures: 16 entries in 256 bytes space.
391s Storage structures created in: 0.000 seconds
391s 
391s Hashing NZ_GG705080.fna forwards
391s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705080.fna backwards
391s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705080.gbk forwards
391s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705080.gbk backwards
391s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Initial hashing took: 0.007 seconds
391s Extracting anchors from hash-space.
391s  (T -0.015 seconds) ETA: Sat Mar 23 14:19:57 2024
391s  6%. (T -0.019 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 18%. (T -0.014 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 31%. (T -0.013 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 43%. (T -0.008 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 56%. (T -0.006 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 68%. (T -0.003 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 81%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 93%.
391s Anchor extraction completed in: 0.018 seconds
391s Total anchors: 0
391s Anchor extraction + merge time: 0.018 seconds
391s Total processing time: 0.139 seconds
391s Writing anchors...
391s Total seeds used in anchors: 16
391s Hash performance:
391s  Keys used: 16 out of 16 possible (100.00%).
391s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
391s  Average pigeons per pigeon hole: 1
391s Writing 16 repeats...Output writing finished in: 0.004 seconds
391s Total time: 0.143 seconds
391s Murasaki finished!
391s PASSED MURASAKI
391s 
391s Testing Genepare on NZ_GG705080.fna
391s 1001
391s PASSED GENEPARSE
391s 
391s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
391s Testing mbfa on NZ_GG705080.fna
391s PASSED mbfa
391s 
391s Test Murasaki on NZ_GG705081.fna
391s Verbosity level is: 0
391s Writing to: output/test
391s Pattern is: 101
391s Max usable hash bits: 27
391s Hit filter is: 0
391s Hash table type is: EcoHash
391s Hashing every: 1 base
391s Histogram detail is: 0
391s Hashing function is: 3
391s Collision profiling is: disabled
391s Repeats are: unmasked
391s Mergefilter is at: 100
391s Random seed: 1711203597 (automatic)
391s Bitscore output: on
391s Leave status records: no
391s Join neighbors is: off
391s Target memory is: 1.30 GB
391s Retain members is: true
391s Store repeatmap? yes
391s Reverse complement data is generated on the fly
391s Rifts allowed: 0
391s Fuzzy Extension: yes
391s Score by minimum pair: yes
391s Gapped anchors: no
391s Large sequence support is: enabled => seqpos is 8 bytes
391s Murasaki version 1.68.6 (LARGESEQ)
391s Loading NZ_GG705081.fna
391s Read 6691bp (6.53 KBp) in 0.001 seconds (12.3 MBp/s)
391s Done with forward strand (6691bp). Preparing reverse complement...
391s  <-> Reversing metdata.
391s Done.
391s Seq NZ_GG705081.fna loaded. 6.53 KB
391s Loading NZ_GG705081.gbk
391s Read 6691bp (6.53 KBp) in 0.001 seconds (11.6 MBp/s)
391s Done with forward strand (6691bp). Preparing reverse complement...
391s  <-> Reversing metdata.
391s Done.
391s Seq NZ_GG705081.gbk loaded. 6.53 KB
391s Sequence loading took: 0.001 seconds
391s Forward frequencies:  A:31.1314%  C:16.8286%  G:17.6057%  T:34.4343%
391s Global base frequencies:  A/T:65.5657%  C/G:34.4343%
391s Pat: 3 bases long with weight 2
391s    1 101 
391s Computing hash parameters...
391s Using 4 hashbits
391s  0%......... (T -0.098 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.076 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.065 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.054 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.043 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.032 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 91%........
391s Acceptable hash function found after 1000 cycles.
391s Best uses 2/2 bases and has 0 empties from 2 inputs.
391s Score: 0.96875 (cf. worst: -4.51562)
391s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
391s Total correlation penalty: 0
391s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
391s                                             10
391s                                             ==
391s w[ 0]>>29:                                 -.C
391s w[ 0]>>30:                                  A.-
391s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
391s Ecolist (optimistic): Expcted entries per list: 11
391s Ecolist (optimistic): Minimum chunks per list: 4
391s Would take minimum 256.000000 bytes to make perfect hash.
391s Hashing 26.14 KB of sequence requires: 
391s  ~ linear (in seq length) hashing cost of 52.27 KB
391s  ~ linear (in seq length) expected anchor cost of 627.28 KB
391s Initial hash table uses: 256 bytes (4 bits, 16 entries)
391s Expected memory usage (without anchors): 52.52 KB
391s Expected memory usage (with anchors): 679.80 KB
391s Hash parameters computed in 0.108 seconds
391s Creating storage structures: 16 entries in 256 bytes space.
391s Storage structures created in: 0.000 seconds
391s 
391s Hashing NZ_GG705081.fna forwards
391s  0%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705081.fna backwards
391s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705081.gbk forwards
391s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705081.gbk backwards
391s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Initial hashing took: 0.006 seconds
391s Extracting anchors from hash-space.
391s  (T -0.014 seconds) ETA: Sat Mar 23 14:19:57 2024
391s  6%. (T -0.021 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 18%. (T -0.013 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 31%. (T -0.010 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 43%. (T -0.007 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 56%. (T -0.005 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 68%. (T -0.003 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 81%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 93%.
391s Anchor extraction completed in: 0.017 seconds
391s Total anchors: 0
391s Anchor extraction + merge time: 0.017 seconds
391s Total processing time: 0.133 seconds
391s Writing anchors...
391s Total seeds used in anchors: 16
391s Hash performance:
391s  Keys used: 16 out of 16 possible (100.00%).
391s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
391s  Average pigeons per pigeon hole: 1
391s Writing 16 repeats...Output writing finished in: 0.004 seconds
391s Total time: 0.137 seconds
391s Murasaki finished!
391s PASSED MURASAKI
391s 
391s Testing Genepare on NZ_GG705081.fna
391s 1001
391s PASSED GENEPARSE
391s 
391s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
391s Testing mbfa on NZ_GG705081.fna
391s PASSED mbfa
391s 
391s Test Murasaki on NZ_GG705082.fna
391s Verbosity level is: 0
391s Writing to: output/test
391s Pattern is: 101
391s Max usable hash bits: 27
391s Hit filter is: 0
391s Hash table type is: EcoHash
391s Hashing every: 1 base
391s Histogram detail is: 0
391s Hashing function is: 3
391s Collision profiling is: disabled
391s Repeats are: unmasked
391s Mergefilter is at: 100
391s Random seed: 1711203597 (automatic)
391s Bitscore output: on
391s Leave status records: no
391s Join neighbors is: off
391s Target memory is: 1.30 GB
391s Retain members is: true
391s Store repeatmap? yes
391s Reverse complement data is generated on the fly
391s Rifts allowed: 0
391s Fuzzy Extension: yes
391s Score by minimum pair: yes
391s Gapped anchors: no
391s Large sequence support is: enabled => seqpos is 8 bytes
391s Murasaki version 1.68.6 (LARGESEQ)
391s Loading NZ_GG705082.fna
391s Read 6008bp (5.87 KBp) in 0.000 seconds (11.7 MBp/s)
391s Done with forward strand (6008bp). Preparing reverse complement...
391s  <-> Reversing metdata.
391s Done.
391s Seq NZ_GG705082.fna loaded. 5.87 KB
391s Loading NZ_GG705082.gbk
391s Read 6008bp (5.87 KBp) in 0.001 seconds (10.1 MBp/s)
391s Done with forward strand (6008bp). Preparing reverse complement...
391s  <-> Reversing metdata.
391s Done.
391s Seq NZ_GG705082.gbk loaded. 5.87 KB
391s Sequence loading took: 0.001 seconds
391s Forward frequencies:  A:33.0892%  C:18.1591%  G:17.6265%  T:31.1252%
391s Global base frequencies:  A/T:64.2144%  C/G:35.7856%
391s Pat: 3 bases long with weight 2
391s    1 101 
391s Computing hash parameters...
391s Using 4 hashbits
391s  0%......... (T -0.097 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.087 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.076 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.065 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.054 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.045 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.024 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.012 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 91%........
391s Acceptable hash function found after 1000 cycles.
391s Best uses 2/2 bases and has 0 empties from 2 inputs.
391s Score: 0.96875 (cf. worst: -4.51562)
391s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
391s Total correlation penalty: 0
391s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
391s                                             10
391s                                             ==
391s w[ 0]>>29:                                 -.C
391s w[ 0]>>30:                                  A.-
391s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
391s Ecolist (optimistic): Expcted entries per list: 11
391s Ecolist (optimistic): Minimum chunks per list: 4
391s Would take minimum 256.000000 bytes to make perfect hash.
391s Hashing 23.47 KB of sequence requires: 
391s  ~ linear (in seq length) hashing cost of 46.94 KB
391s  ~ linear (in seq length) expected anchor cost of 563.25 KB
391s Initial hash table uses: 256 bytes (4 bits, 16 entries)
391s Expected memory usage (without anchors): 47.19 KB
391s Expected memory usage (with anchors): 610.44 KB
391s Hash parameters computed in 0.139 seconds
391s Creating storage structures: 16 entries in 256 bytes space.
391s Storage structures created in: 0.000 seconds
391s 
391s Hashing NZ_GG705082.fna forwards
391s  0%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705082.fna backwards
391s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705082.gbk forwards
391s  0%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705082.gbk backwards
391s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Initial hashing took: 0.007 seconds
391s Extracting anchors from hash-space.
391s  (T -0.013 seconds) ETA: Sat Mar 23 14:19:57 2024
391s  6%. (T -0.018 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 18%. (T -0.012 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 31%. (T -0.009 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 43%. (T -0.006 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 56%. (T -0.004 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 68%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 81%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 93%.
391s Anchor extraction completed in: 0.015 seconds
391s Total anchors: 0
391s Anchor extraction + merge time: 0.015 seconds
391s Total processing time: 0.163 seconds
391s Writing anchors...
391s Total seeds used in anchors: 16
391s Hash performance:
391s  Keys used: 16 out of 16 possible (100.00%).
391s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
391s  Average pigeons per pigeon hole: 1
391s Writing 16 repeats...Output writing finished in: 0.004 seconds
391s Total time: 0.167 seconds
391s Murasaki finished!
391s PASSED MURASAKI
391s 
391s Testing Genepare on NZ_GG705082.fna
391s 1001
391s PASSED GENEPARSE
391s 
391s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
391s Testing mbfa on NZ_GG705082.fna
391s PASSED mbfa
391s 
391s Test Murasaki on NZ_GG705083.fna
391s Verbosity level is: 0
391s Writing to: output/test
391s Pattern is: 101
391s Max usable hash bits: 27
391s Hit filter is: 0
391s Hash table type is: EcoHash
391s Hashing every: 1 base
391s Histogram detail is: 0
391s Hashing function is: 3
391s Collision profiling is: disabled
391s Repeats are: unmasked
391s Mergefilter is at: 100
391s Random seed: 1711203597 (automatic)
391s Bitscore output: on
391s Leave status records: no
391s Join neighbors is: off
391s Target memory is: 1.30 GB
391s Retain members is: true
391s Store repeatmap? yes
391s Reverse complement data is generated on the fly
391s Rifts allowed: 0
391s Fuzzy Extension: yes
391s Score by minimum pair: yes
391s Gapped anchors: no
391s Large sequence support is: enabled => seqpos is 8 bytes
391s Murasaki version 1.68.6 (LARGESEQ)
391s Loading NZ_GG705083.fna
391s Read 5476bp (5.35 KBp) in 0.001 seconds (10.1 MBp/s)
391s Done with forward strand (5476bp). Preparing reverse complement...
391s  <-> Reversing metdata.
391s Done.
391s Seq NZ_GG705083.fna loaded. 5.35 KB
391s Loading NZ_GG705083.gbk
391s Read 5476bp (5.35 KBp) in 0.000 seconds (11.0 MBp/s)
391s Done with forward strand (5476bp). Preparing reverse complement...
391s  <-> Reversing metdata.
391s Done.
391s Seq NZ_GG705083.gbk loaded. 5.35 KB
391s Sequence loading took: 0.001 seconds
391s Forward frequencies:  A:28.7071%  C:18.6815%  G:17.7137%  T:34.8977%
391s Global base frequencies:  A/T:63.6048%  C/G:36.3952%
391s Pat: 3 bases long with weight 2
391s    1 101 
391s Computing hash parameters...
391s Using 4 hashbits
391s  0%......... (T -0.101 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.090 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.081 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.070 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.057 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 91%........
391s Acceptable hash function found after 1000 cycles.
391s Best uses 2/2 bases and has 0 empties from 2 inputs.
391s Score: 0.96875 (cf. worst: -4.51562)
391s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
391s Total correlation penalty: 0
391s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
391s                                             10
391s                                             ==
391s w[ 0]>>29:                                 -.C
391s w[ 0]>>30:                                  A.-
391s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
391s Ecolist (optimistic): Expcted entries per list: 11
391s Ecolist (optimistic): Minimum chunks per list: 4
391s Would take minimum 256.000000 bytes to make perfect hash.
391s Hashing 21.39 KB of sequence requires: 
391s  ~ linear (in seq length) hashing cost of 42.78 KB
391s  ~ linear (in seq length) expected anchor cost of 513.38 KB
391s Initial hash table uses: 256 bytes (4 bits, 16 entries)
391s Expected memory usage (without anchors): 43.03 KB
391s Expected memory usage (with anchors): 556.41 KB
391s Hash parameters computed in 0.113 seconds
391s Creating storage structures: 16 entries in 256 bytes space.
391s Storage structures created in: 0.000 seconds
391s 
391s Hashing NZ_GG705083.fna forwards
391s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705083.fna backwards
391s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705083.gbk forwards
391s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Hashing NZ_GG705083.gbk backwards
391s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 90%.........
391s Initial hashing took: 0.004 seconds
391s Extracting anchors from hash-space.
391s  (T -0.013 seconds) ETA: Sat Mar 23 14:19:57 2024
391s  6%. (T -0.016 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 18%. (T -0.011 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 31%. (T -0.009 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 43%. (T -0.006 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 56%. (T -0.004 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 68%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 81%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:57 2024
391s 93%.
391s Anchor extraction completed in: 0.013 seconds
391s Total anchors: 0
391s Anchor extraction + merge time: 0.013 seconds
391s Total processing time: 0.133 seconds
391s Writing anchors...
391s Total seeds used in anchors: 16
391s Hash performance:
391s  Keys used: 16 out of 16 possible (100.00%).
391s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
391s  Average pigeons per pigeon hole: 1
391s Writing 16 repeats...Output writing finished in: 0.004 seconds
391s Total time: 0.136 seconds
391s Murasaki finished!
391s PASSED MURASAKI
391s 
391s Testing Genepare on NZ_GG705083.fna
391s 1001
391s PASSED GENEPARSE
391s 
391s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
391s Testing mbfa on NZ_GG705083.fna
391s PASSED mbfa
391s 
391s Test Murasaki on NZ_GG705084.fna
391s Verbosity level is: 0
391s Writing to: output/test
391s Pattern is: 101
391s Max usable hash bits: 27
391s Hit filter is: 0
391s Hash table type is: EcoHash
391s Hashing every: 1 base
391s Histogram detail is: 0
391s Hashing function is: 3
391s Collision profiling is: disabled
391s Repeats are: unmasked
391s Mergefilter is at: 100
391s Random seed: 1711203597 (automatic)
391s Bitscore output: on
391s Leave status records: no
391s Join neighbors is: off
391s Target memory is: 1.30 GB
391s Retain members is: true
391s Store repeatmap? yes
391s Reverse complement data is generated on the fly
391s Rifts allowed: 0
391s Fuzzy Extension: yes
391s Score by minimum pair: yes
391s Gapped anchors: no
391s Large sequence support is: enabled => seqpos is 8 bytes
391s Murasaki version 1.68.6 (LARGESEQ)
391s Loading NZ_GG705084.fna
391s Read 5223bp (5.10 KBp) in 0.000 seconds (11.7 MBp/s)
391s Done with forward strand (5223bp). Preparing reverse complement...
391s  <-> Reversing metdata.
391s Done.
391s Seq NZ_GG705084.fna loaded. 5.10 KB
391s Loading NZ_GG705084.gbk
391s Read 5223bp (5.10 KBp) in 0.000 seconds (11.7 MBp/s)
391s Done with forward strand (5223bp). Preparing reverse complement...
391s  <-> Reversing metdata.
391s Done.
391s Seq NZ_GG705084.gbk loaded. 5.10 KB
391s Sequence loading took: 0.001 seconds
391s Forward frequencies:  A:27.8384%  C:19.7588%  G:16.906%  T:35.4968%
391s Global base frequencies:  A/T:63.3352%  C/G:36.6648%
391s Pat: 3 bases long with weight 2
391s    1 101 
391s Computing hash parameters...
391s Using 4 hashbits
391s  0%......... (T -0.099 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.078 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 91%........
392s Acceptable hash function found after 1000 cycles.
392s Best uses 2/2 bases and has 0 empties from 2 inputs.
392s Score: 0.96875 (cf. worst: -4.51562)
392s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
392s Total correlation penalty: 0
392s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
392s                                             10
392s                                             ==
392s w[ 0]>>29:                                 -.C
392s w[ 0]>>30:                                  A.-
392s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
392s Ecolist (optimistic): Expcted entries per list: 11
392s Ecolist (optimistic): Minimum chunks per list: 4
392s Would take minimum 256.000000 bytes to make perfect hash.
392s Hashing 20.40 KB of sequence requires: 
392s  ~ linear (in seq length) hashing cost of 40.80 KB
392s  ~ linear (in seq length) expected anchor cost of 489.66 KB
392s Initial hash table uses: 256 bytes (4 bits, 16 entries)
392s Expected memory usage (without anchors): 41.05 KB
392s Expected memory usage (with anchors): 530.70 KB
392s Hash parameters computed in 0.109 seconds
392s Creating storage structures: 16 entries in 256 bytes space.
392s Storage structures created in: 0.000 seconds
392s 
392s Hashing NZ_GG705084.fna forwards
392s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705084.fna backwards
392s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705084.gbk forwards
392s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705084.gbk backwards
392s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Initial hashing took: 0.008 seconds
392s Extracting anchors from hash-space.
392s  (T -0.012 seconds) ETA: Sat Mar 23 14:19:58 2024
392s  6%. (T -0.015 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 18%. (T -0.010 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 31%. (T -0.008 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 43%. (T -0.005 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 56%. (T -0.004 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 68%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 81%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 93%.
392s Anchor extraction completed in: 0.012 seconds
392s Total anchors: 0
392s Anchor extraction + merge time: 0.012 seconds
392s Total processing time: 0.131 seconds
392s Writing anchors...
392s Total seeds used in anchors: 16
392s Hash performance:
392s  Keys used: 16 out of 16 possible (100.00%).
392s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
392s  Average pigeons per pigeon hole: 1
392s Writing 16 repeats...Output writing finished in: 0.003 seconds
392s Total time: 0.134 seconds
392s Murasaki finished!
392s PASSED MURASAKI
392s 
392s Testing Genepare on NZ_GG705084.fna
392s 1001
392s PASSED GENEPARSE
392s 
392s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
392s Testing mbfa on NZ_GG705084.fna
392s PASSED mbfa
392s 
392s Test Murasaki on NZ_GG705085.fna
392s Verbosity level is: 0
392s Writing to: output/test
392s Pattern is: 101
392s Max usable hash bits: 27
392s Hit filter is: 0
392s Hash table type is: EcoHash
392s Hashing every: 1 base
392s Histogram detail is: 0
392s Hashing function is: 3
392s Collision profiling is: disabled
392s Repeats are: unmasked
392s Mergefilter is at: 100
392s Random seed: 1711203598 (automatic)
392s Bitscore output: on
392s Leave status records: no
392s Join neighbors is: off
392s Target memory is: 1.30 GB
392s Retain members is: true
392s Store repeatmap? yes
392s Reverse complement data is generated on the fly
392s Rifts allowed: 0
392s Fuzzy Extension: yes
392s Score by minimum pair: yes
392s Gapped anchors: no
392s Large sequence support is: enabled => seqpos is 8 bytes
392s Murasaki version 1.68.6 (LARGESEQ)
392s Loading NZ_GG705085.fna
392s Read 4549bp (4.44 KBp) in 0.000 seconds (9.6 MBp/s)
392s Done with forward strand (5055bp). Preparing reverse complement...
392s  <-> Reversing metdata.
392s Done.
392s Seq NZ_GG705085.fna loaded. 4.94 KB
392s Loading NZ_GG705085.gbk
392s Read 4549bp (4.44 KBp) in 0.000 seconds (10.8 MBp/s)
392s Done with forward strand (5055bp). Preparing reverse complement...
392s  <-> Reversing metdata.
392s Done.
392s Seq NZ_GG705085.gbk loaded. 4.94 KB
392s Sequence loading took: 0.001 seconds
392s Forward frequencies:  A:26.6212%  C:21.1255%  G:30.0286%  T:22.2247%
392s Global base frequencies:  A/T:48.8459%  C/G:51.1541%
392s Pat: 3 bases long with weight 2
392s    1 101 
392s Computing hash parameters...
392s Using 4 hashbits
392s  0%......... (T -0.104 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.090 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 91%........
392s Acceptable hash function found after 1000 cycles.
392s Best uses 2/2 bases and has 0 empties from 2 inputs.
392s Score: 0.96875 (cf. worst: -4.51562)
392s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
392s Total correlation penalty: 0
392s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
392s                                             10
392s                                             ==
392s w[ 0]>>29:                                 -.C
392s w[ 0]>>30:                                  A.-
392s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
392s Ecolist (optimistic): Expcted entries per list: 11
392s Ecolist (optimistic): Minimum chunks per list: 4
392s Would take minimum 256.000000 bytes to make perfect hash.
392s Hashing 17.77 KB of sequence requires: 
392s  ~ linear (in seq length) hashing cost of 35.53 KB
392s  ~ linear (in seq length) expected anchor cost of 473.91 KB
392s Initial hash table uses: 256 bytes (4 bits, 16 entries)
392s Expected memory usage (without anchors): 35.78 KB
392s Expected memory usage (with anchors): 509.69 KB
392s Hash parameters computed in 0.114 seconds
392s Creating storage structures: 16 entries in 256 bytes space.
392s Storage structures created in: 0.000 seconds
392s 
392s Hashing NZ_GG705085.fna forwards
392s  0%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705085.fna backwards
392s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705085.gbk forwards
392s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705085.gbk backwards
392s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Initial hashing took: 0.009 seconds
392s Extracting anchors from hash-space.
392s  (T -0.011 seconds) ETA: Sat Mar 23 14:19:58 2024
392s  6%. (T -0.009 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 18%. (T -0.007 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 31%. (T -0.006 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 43%. (T -0.004 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 56%. (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 68%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 81%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 93%.
392s Anchor extraction completed in: 0.011 seconds
392s Total anchors: 0
392s Anchor extraction + merge time: 0.011 seconds
392s Total processing time: 0.136 seconds
392s Writing anchors...
392s Total seeds used in anchors: 16
392s Hash performance:
392s  Keys used: 16 out of 16 possible (100.00%).
392s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
392s  Average pigeons per pigeon hole: 1
392s Writing 16 repeats...Output writing finished in: 0.003 seconds
392s Total time: 0.139 seconds
392s Murasaki finished!
392s PASSED MURASAKI
392s 
392s Testing Genepare on NZ_GG705085.fna
392s 1001
392s PASSED GENEPARSE
392s 
392s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
392s Testing mbfa on NZ_GG705085.fna
392s PASSED mbfa
392s 
392s Test Murasaki on NZ_GG705086.fna
392s Verbosity level is: 0
392s Writing to: output/test
392s Pattern is: 101
392s Max usable hash bits: 27
392s Hit filter is: 0
392s Hash table type is: EcoHash
392s Hashing every: 1 base
392s Histogram detail is: 0
392s Hashing function is: 3
392s Collision profiling is: disabled
392s Repeats are: unmasked
392s Mergefilter is at: 100
392s Random seed: 1711203598 (automatic)
392s Bitscore output: on
392s Leave status records: no
392s Join neighbors is: off
392s Target memory is: 1.30 GB
392s Retain members is: true
392s Store repeatmap? yes
392s Reverse complement data is generated on the fly
392s Rifts allowed: 0
392s Fuzzy Extension: yes
392s Score by minimum pair: yes
392s Gapped anchors: no
392s Large sequence support is: enabled => seqpos is 8 bytes
392s Murasaki version 1.68.6 (LARGESEQ)
392s Loading NZ_GG705086.fna
392s Read 4868bp (4.75 KBp) in 0.000 seconds (9.9 MBp/s)
392s Done with forward strand (4868bp). Preparing reverse complement...
392s  <-> Reversing metdata.
392s Done.
392s Seq NZ_GG705086.fna loaded. 4.75 KB
392s Loading NZ_GG705086.gbk
392s Read 4868bp (4.75 KBp) in 0.000 seconds (11.0 MBp/s)
392s Done with forward strand (4868bp). Preparing reverse complement...
392s  <-> Reversing metdata.
392s Done.
392s Seq NZ_GG705086.gbk loaded. 4.75 KB
392s Sequence loading took: 0.001 seconds
392s Forward frequencies:  A:26.9104%  C:22.5349%  G:22.4938%  T:28.0608%
392s Global base frequencies:  A/T:54.9712%  C/G:45.0288%
392s Pat: 3 bases long with weight 2
392s    1 101 
392s Computing hash parameters...
392s Using 4 hashbits
392s  0%......... (T -0.106 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.090 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 91%........
392s Acceptable hash function found after 1000 cycles.
392s Best uses 2/2 bases and has 0 empties from 2 inputs.
392s Score: 0.96875 (cf. worst: -4.51562)
392s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
392s Total correlation penalty: 0
392s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
392s                                             10
392s                                             ==
392s w[ 0]>>29:                                 -.C
392s w[ 0]>>30:                                  A.-
392s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
392s Ecolist (optimistic): Expcted entries per list: 11
392s Ecolist (optimistic): Minimum chunks per list: 4
392s Would take minimum 256.000000 bytes to make perfect hash.
392s Hashing 19.02 KB of sequence requires: 
392s  ~ linear (in seq length) hashing cost of 38.03 KB
392s  ~ linear (in seq length) expected anchor cost of 456.38 KB
392s Initial hash table uses: 256 bytes (4 bits, 16 entries)
392s Expected memory usage (without anchors): 38.28 KB
392s Expected memory usage (with anchors): 494.66 KB
392s Hash parameters computed in 0.110 seconds
392s Creating storage structures: 16 entries in 256 bytes space.
392s Storage structures created in: 0.000 seconds
392s 
392s Hashing NZ_GG705086.fna forwards
392s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705086.fna backwards
392s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705086.gbk forwards
392s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705086.gbk backwards
392s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Initial hashing took: 0.008 seconds
392s Extracting anchors from hash-space.
392s  (T -0.018 seconds) ETA: Sat Mar 23 14:19:58 2024
392s  6%. (T -0.010 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 18%. (T -0.008 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 31%. (T -0.007 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 43%. (T -0.005 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 56%. (T -0.004 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 68%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 81%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 93%.
392s Anchor extraction completed in: 0.012 seconds
392s Total anchors: 0
392s Anchor extraction + merge time: 0.012 seconds
392s Total processing time: 0.131 seconds
392s Writing anchors...
392s Total seeds used in anchors: 16
392s Hash performance:
392s  Keys used: 16 out of 16 possible (100.00%).
392s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
392s  Average pigeons per pigeon hole: 1
392s Writing 16 repeats...Output writing finished in: 0.003 seconds
392s Total time: 0.134 seconds
392s Murasaki finished!
392s PASSED MURASAKI
392s 
392s Testing Genepare on NZ_GG705086.fna
392s 1001
392s PASSED GENEPARSE
392s 
392s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
392s Testing mbfa on NZ_GG705086.fna
392s PASSED mbfa
392s 
392s Test Murasaki on NZ_GG705087.fna
392s Verbosity level is: 0
392s Writing to: output/test
392s Pattern is: 101
392s Max usable hash bits: 27
392s Hit filter is: 0
392s Hash table type is: EcoHash
392s Hashing every: 1 base
392s Histogram detail is: 0
392s Hashing function is: 3
392s Collision profiling is: disabled
392s Repeats are: unmasked
392s Mergefilter is at: 100
392s Random seed: 1711203598 (automatic)
392s Bitscore output: on
392s Leave status records: no
392s Join neighbors is: off
392s Target memory is: 1.30 GB
392s Retain members is: true
392s Store repeatmap? yes
392s Reverse complement data is generated on the fly
392s Rifts allowed: 0
392s Fuzzy Extension: yes
392s Score by minimum pair: yes
392s Gapped anchors: no
392s Large sequence support is: enabled => seqpos is 8 bytes
392s Murasaki version 1.68.6 (LARGESEQ)
392s Loading NZ_GG705087.fna
392s Read 4863bp (4.75 KBp) in 0.000 seconds (9.7 MBp/s)
392s Done with forward strand (4863bp). Preparing reverse complement...
392s  <-> Reversing metdata.
392s Done.
392s Seq NZ_GG705087.fna loaded. 4.75 KB
392s Loading NZ_GG705087.gbk
392s Read 4863bp (4.75 KBp) in 0.000 seconds (9.6 MBp/s)
392s Done with forward strand (4863bp). Preparing reverse complement...
392s  <-> Reversing metdata.
392s Done.
392s Seq NZ_GG705087.gbk loaded. 4.75 KB
392s Sequence loading took: 0.001 seconds
392s Forward frequencies:  A:34.0119%  C:17.4378%  G:19.2679%  T:29.2823%
392s Global base frequencies:  A/T:63.2943%  C/G:36.7057%
392s Pat: 3 bases long with weight 2
392s    1 101 
392s Computing hash parameters...
392s Using 4 hashbits
392s  0%......... (T -0.099 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.076 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 91%........
392s Acceptable hash function found after 1000 cycles.
392s Best uses 2/2 bases and has 0 empties from 2 inputs.
392s Score: 0.96875 (cf. worst: -4.51562)
392s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
392s Total correlation penalty: 0
392s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
392s                                             10
392s                                             ==
392s w[ 0]>>29:                                 -.C
392s w[ 0]>>30:                                  A.-
392s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
392s Ecolist (optimistic): Expcted entries per list: 11
392s Ecolist (optimistic): Minimum chunks per list: 4
392s Would take minimum 256.000000 bytes to make perfect hash.
392s Hashing 19.00 KB of sequence requires: 
392s  ~ linear (in seq length) hashing cost of 37.98 KB
392s  ~ linear (in seq length) expected anchor cost of 455.91 KB
392s Initial hash table uses: 256 bytes (4 bits, 16 entries)
392s Expected memory usage (without anchors): 38.23 KB
392s Expected memory usage (with anchors): 494.14 KB
392s Hash parameters computed in 0.115 seconds
392s Creating storage structures: 16 entries in 256 bytes space.
392s Storage structures created in: 0.000 seconds
392s 
392s Hashing NZ_GG705087.fna forwards
392s  0%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705087.fna backwards
392s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705087.gbk forwards
392s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705087.gbk backwards
392s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Initial hashing took: 0.005 seconds
392s Extracting anchors from hash-space.
392s  (T -0.010 seconds) ETA: Sat Mar 23 14:19:58 2024
392s  6%. (T -0.006 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 18%. (T -0.007 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 31%. (T -0.006 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 43%. (T -0.005 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 56%. (T -0.004 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 68%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 81%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 93%.
392s Anchor extraction completed in: 0.012 seconds
392s Total anchors: 0
392s Anchor extraction + merge time: 0.012 seconds
392s Total processing time: 0.133 seconds
392s Writing anchors...
392s Total seeds used in anchors: 16
392s Hash performance:
392s  Keys used: 16 out of 16 possible (100.00%).
392s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
392s  Average pigeons per pigeon hole: 1
392s Writing 16 repeats...Output writing finished in: 0.003 seconds
392s Total time: 0.136 seconds
392s Murasaki finished!
392s PASSED MURASAKI
392s 
392s Testing Genepare on NZ_GG705087.fna
392s 1001
392s PASSED GENEPARSE
392s 
392s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
392s Testing mbfa on NZ_GG705087.fna
392s PASSED mbfa
392s 
392s Test Murasaki on NZ_GG705088.fna
392s Verbosity level is: 0
392s Writing to: output/test
392s Pattern is: 101
392s Max usable hash bits: 27
392s Hit filter is: 0
392s Hash table type is: EcoHash
392s Hashing every: 1 base
392s Histogram detail is: 0
392s Hashing function is: 3
392s Collision profiling is: disabled
392s Repeats are: unmasked
392s Mergefilter is at: 100
392s Random seed: 1711203598 (automatic)
392s Bitscore output: on
392s Leave status records: no
392s Join neighbors is: off
392s Target memory is: 1.30 GB
392s Retain members is: true
392s Store repeatmap? yes
392s Reverse complement data is generated on the fly
392s Rifts allowed: 0
392s Fuzzy Extension: yes
392s Score by minimum pair: yes
392s Gapped anchors: no
392s Large sequence support is: enabled => seqpos is 8 bytes
392s Murasaki version 1.68.6 (LARGESEQ)
392s Loading NZ_GG705088.fna
392s Read 2146bp (2.10 KBp) in 0.000 seconds (5.6 MBp/s)
392s Done with forward strand (2146bp). Preparing reverse complement...
392s  <-> Reversing metdata.
392s Done.
392s Seq NZ_GG705088.fna loaded. 2.10 KB
392s Loading NZ_GG705088.gbk
392s Read 2146bp (2.10 KBp) in 0.000 seconds (7.4 MBp/s)
392s Done with forward strand (2146bp). Preparing reverse complement...
392s  <-> Reversing metdata.
392s Done.
392s Seq NZ_GG705088.gbk loaded. 2.10 KB
392s Sequence loading took: 0.001 seconds
392s Forward frequencies:  A:27.4464%  C:18.1733%  G:20.876%  T:33.5042%
392s Global base frequencies:  A/T:60.9506%  C/G:39.0494%
392s Pat: 3 bases long with weight 2
392s    1 101 
392s Computing hash parameters...
392s Using 4 hashbits
392s  0%......... (T -0.105 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.090 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.079 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 91%........
392s Acceptable hash function found after 1000 cycles.
392s Best uses 2/2 bases and has 0 empties from 2 inputs.
392s Score: 0.96875 (cf. worst: -4.51562)
392s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
392s Total correlation penalty: 0
392s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
392s                                             10
392s                                             ==
392s w[ 0]>>29:                                 -.C
392s w[ 0]>>30:                                  A.-
392s Ecolist (optimistic): (seqbits: 2 idxbits: 13 minBlocks: 1 initblocks: 1)
392s Ecolist (optimistic): Expcted entries per list: 10
392s Ecolist (optimistic): Minimum chunks per list: 4
392s Would take minimum 256.000000 bytes to make perfect hash.
392s Hashing 8.38 KB of sequence requires: 
392s  ~ linear (in seq length) hashing cost of 15.72 KB
392s  ~ linear (in seq length) expected anchor cost of 201.19 KB
392s Initial hash table uses: 256 bytes (4 bits, 16 entries)
392s Expected memory usage (without anchors): 15.97 KB
392s Expected memory usage (with anchors): 217.16 KB
392s Hash parameters computed in 0.113 seconds
392s Creating storage structures: 16 entries in 256 bytes space.
392s Storage structures created in: 0.000 seconds
392s 
392s Hashing NZ_GG705088.fna forwards
392s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705088.fna backwards
392s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705088.gbk forwards
392s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705088.gbk backwards
392s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Initial hashing took: 0.006 seconds
392s Extracting anchors from hash-space.
392s  (T -0.004 seconds) ETA: Sat Mar 23 14:19:58 2024
392s  6%. (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 18%. (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 31%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 43%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 68%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 93%.
392s Anchor extraction completed in: 0.004 seconds
392s Total anchors: 0
392s Anchor extraction + merge time: 0.004 seconds
392s Total processing time: 0.125 seconds
392s Writing anchors...
392s Total seeds used in anchors: 16
392s Hash performance:
392s  Keys used: 16 out of 16 possible (100.00%).
392s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
392s  Average pigeons per pigeon hole: 1
392s Writing 16 repeats...Output writing finished in: 0.001 seconds
392s Total time: 0.126 seconds
392s Murasaki finished!
392s PASSED MURASAKI
392s 
392s Testing Genepare on NZ_GG705088.fna
392s 1001
392s PASSED GENEPARSE
392s 
392s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
392s Testing mbfa on NZ_GG705088.fna
392s PASSED mbfa
392s 
392s Test Murasaki on NZ_GG705089.fna
392s Verbosity level is: 0
392s Writing to: output/test
392s Pattern is: 101
392s Max usable hash bits: 27
392s Hit filter is: 0
392s Hash table type is: EcoHash
392s Hashing every: 1 base
392s Histogram detail is: 0
392s Hashing function is: 3
392s Collision profiling is: disabled
392s Repeats are: unmasked
392s Mergefilter is at: 100
392s Random seed: 1711203598 (automatic)
392s Bitscore output: on
392s Leave status records: no
392s Join neighbors is: off
392s Target memory is: 1.30 GB
392s Retain members is: true
392s Store repeatmap? yes
392s Reverse complement data is generated on the fly
392s Rifts allowed: 0
392s Fuzzy Extension: yes
392s Score by minimum pair: yes
392s Gapped anchors: no
392s Large sequence support is: enabled => seqpos is 8 bytes
392s Murasaki version 1.68.6 (LARGESEQ)
392s Loading NZ_GG705089.fna
392s Read 1396bp (1.36 KBp) in 0.000 seconds (3.2 MBp/s)
392s Done with forward strand (1396bp). Preparing reverse complement...
392s  <-> Reversing metdata.
392s Done.
392s Seq NZ_GG705089.fna loaded. 1.36 KB
392s Loading NZ_GG705089.gbk
392s Read 1396bp (1.36 KBp) in 0.000 seconds (4.4 MBp/s)
392s Done with forward strand (1396bp). Preparing reverse complement...
392s  <-> Reversing metdata.
392s Done.
392s Seq NZ_GG705089.gbk loaded. 1.36 KB
392s Sequence loading took: 0.001 seconds
392s Forward frequencies:  A:33.4527%  C:18.0516%  G:19.8424%  T:28.6533%
392s Global base frequencies:  A/T:62.106%  C/G:37.894%
392s Pat: 3 bases long with weight 2
392s    1 101 
392s Computing hash parameters...
392s Using 4 hashbits
392s  0%......... (T -0.126 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.100 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.084 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.070 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.057 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 91%........
392s Acceptable hash function found after 1000 cycles.
392s Best uses 2/2 bases and has 0 empties from 2 inputs.
392s Score: 0.96875 (cf. worst: -4.51562)
392s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
392s Total correlation penalty: 0
392s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
392s                                             10
392s                                             ==
392s w[ 0]>>29:                                 -.C
392s w[ 0]>>30:                                  A.-
392s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
392s Ecolist (optimistic): Expcted entries per list: 9
392s Ecolist (optimistic): Minimum chunks per list: 4
392s Would take minimum 256.000000 bytes to make perfect hash.
392s Hashing 5.45 KB of sequence requires: 
392s  ~ linear (in seq length) hashing cost of 9.54 KB
392s  ~ linear (in seq length) expected anchor cost of 130.88 KB
392s Initial hash table uses: 256 bytes (4 bits, 16 entries)
392s Expected memory usage (without anchors): 9.79 KB
392s Expected memory usage (with anchors): 140.67 KB
392s Hash parameters computed in 0.113 seconds
392s Creating storage structures: 16 entries in 256 bytes space.
392s Storage structures created in: 0.000 seconds
392s 
392s Hashing NZ_GG705089.fna forwards
392s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705089.fna backwards
392s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705089.gbk forwards
392s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Hashing NZ_GG705089.gbk backwards
392s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 90%.........
392s Initial hashing took: 0.003 seconds
392s Extracting anchors from hash-space.
392s  (T -0.003 seconds) ETA: Sat Mar 23 14:19:58 2024
392s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 18%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 31%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 43%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 68%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:19:58 2024
392s 93%.
392s Anchor extraction completed in: 0.004 seconds
392s Total anchors: 0
392s Anchor extraction + merge time: 0.004 seconds
392s Total processing time: 0.121 seconds
392s Writing anchors...
392s Total seeds used in anchors: 16
392s Hash performance:
392s  Keys used: 16 out of 16 possible (100.00%).
392s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
392s  Average pigeons per pigeon hole: 1
392s Writing 16 repeats...Output writing finished in: 0.002 seconds
392s Total time: 0.123 seconds
392s Murasaki finished!
392s PASSED MURASAKI
392s 
392s Testing Genepare on NZ_GG705089.fna
392s 397
392s PASSED GENEPARSE
392s 
393s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
393s Testing mbfa on NZ_GG705089.fna
393s PASSED mbfa
393s 
393s Test Murasaki on NZ_GG705090.fna
393s Verbosity level is: 0
393s Writing to: output/test
393s Pattern is: 101
393s Max usable hash bits: 27
393s Hit filter is: 0
393s Hash table type is: EcoHash
393s Hashing every: 1 base
393s Histogram detail is: 0
393s Hashing function is: 3
393s Collision profiling is: disabled
393s Repeats are: unmasked
393s Mergefilter is at: 100
393s Random seed: 1711203598 (automatic)
393s Bitscore output: on
393s Leave status records: no
393s Join neighbors is: off
393s Target memory is: 1.30 GB
393s Retain members is: true
393s Store repeatmap? yes
393s Reverse complement data is generated on the fly
393s Rifts allowed: 0
393s Fuzzy Extension: yes
393s Score by minimum pair: yes
393s Gapped anchors: no
393s Large sequence support is: enabled => seqpos is 8 bytes
393s Murasaki version 1.68.6 (LARGESEQ)
393s Loading NZ_GG705090.fna
393s Read 1374bp (1.34 KBp) in 0.000 seconds (3.5 MBp/s)
393s Done with forward strand (1374bp). Preparing reverse complement...
393s  <-> Reversing metdata.
393s Done.
393s Seq NZ_GG705090.fna loaded. 1.34 KB
393s Loading NZ_GG705090.gbk
393s Read 1374bp (1.34 KBp) in 0.000 seconds (5.7 MBp/s)
393s Done with forward strand (1374bp). Preparing reverse complement...
393s  <-> Reversing metdata.
393s Done.
393s Seq NZ_GG705090.gbk loaded. 1.34 KB
393s Sequence loading took: 0.001 seconds
393s Forward frequencies:  A:29.6215%  C:22.7802%  G:22.6346%  T:24.9636%
393s Global base frequencies:  A/T:54.5852%  C/G:45.4148%
393s Pat: 3 bases long with weight 2
393s    1 101 
393s Computing hash parameters...
393s Using 4 hashbits
393s  0%......... (T -0.102 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.100 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.085 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.071 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.058 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 91%........
393s Acceptable hash function found after 1000 cycles.
393s Best uses 2/2 bases and has 0 empties from 2 inputs.
393s Score: 0.96875 (cf. worst: -4.51562)
393s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
393s Total correlation penalty: 0
393s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
393s                                             10
393s                                             ==
393s w[ 0]>>29:                                 -.C
393s w[ 0]>>30:                                  A.-
393s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
393s Ecolist (optimistic): Expcted entries per list: 9
393s Ecolist (optimistic): Minimum chunks per list: 4
393s Would take minimum 256.000000 bytes to make perfect hash.
393s Hashing 5.37 KB of sequence requires: 
393s  ~ linear (in seq length) hashing cost of 9.39 KB
393s  ~ linear (in seq length) expected anchor cost of 128.81 KB
393s Initial hash table uses: 256 bytes (4 bits, 16 entries)
393s Expected memory usage (without anchors): 9.64 KB
393s Expected memory usage (with anchors): 138.46 KB
393s Hash parameters computed in 0.114 seconds
393s Creating storage structures: 16 entries in 256 bytes space.
393s Storage structures created in: 0.000 seconds
393s 
393s Hashing NZ_GG705090.fna forwards
393s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705090.fna backwards
393s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705090.gbk forwards
393s  0%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.005 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.004 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705090.gbk backwards
393s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Initial hashing took: 0.008 seconds
393s Extracting anchors from hash-space.
393s  (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 18%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 31%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 68%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 93%.
393s Anchor extraction completed in: 0.003 seconds
393s Total anchors: 0
393s Anchor extraction + merge time: 0.003 seconds
393s Total processing time: 0.126 seconds
393s Writing anchors...
393s Total seeds used in anchors: 16
393s Hash performance:
393s  Keys used: 16 out of 16 possible (100.00%).
393s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
393s  Average pigeons per pigeon hole: 1
393s Writing 16 repeats...Output writing finished in: 0.001 seconds
393s Total time: 0.128 seconds
393s Murasaki finished!
393s PASSED MURASAKI
393s 
393s Testing Genepare on NZ_GG705090.fna
393s 375
393s PASSED GENEPARSE
393s 
393s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
393s Testing mbfa on NZ_GG705090.fna
393s PASSED mbfa
393s 
393s Test Murasaki on NZ_GG705091.fna
393s Verbosity level is: 0
393s Writing to: output/test
393s Pattern is: 101
393s Max usable hash bits: 27
393s Hit filter is: 0
393s Hash table type is: EcoHash
393s Hashing every: 1 base
393s Histogram detail is: 0
393s Hashing function is: 3
393s Collision profiling is: disabled
393s Repeats are: unmasked
393s Mergefilter is at: 100
393s Random seed: 1711203599 (automatic)
393s Bitscore output: on
393s Leave status records: no
393s Join neighbors is: off
393s Target memory is: 1.30 GB
393s Retain members is: true
393s Store repeatmap? yes
393s Reverse complement data is generated on the fly
393s Rifts allowed: 0
393s Fuzzy Extension: yes
393s Score by minimum pair: yes
393s Gapped anchors: no
393s Large sequence support is: enabled => seqpos is 8 bytes
393s Murasaki version 1.68.6 (LARGESEQ)
393s Loading NZ_GG705091.fna
393s Read 1318bp (1.29 KBp) in 0.000 seconds (3.6 MBp/s)
393s Done with forward strand (1318bp). Preparing reverse complement...
393s  <-> Reversing metdata.
393s Done.
393s Seq NZ_GG705091.fna loaded. 1.29 KB
393s Loading NZ_GG705091.gbk
393s Read 1318bp (1.29 KBp) in 0.000 seconds (5.2 MBp/s)
393s Done with forward strand (1318bp). Preparing reverse complement...
393s  <-> Reversing metdata.
393s Done.
393s Seq NZ_GG705091.gbk loaded. 1.29 KB
393s Sequence loading took: 0.001 seconds
393s Forward frequencies:  A:29.742%  C:23.8998%  G:22.1548%  T:24.2033%
393s Global base frequencies:  A/T:53.9454%  C/G:46.0546%
393s Pat: 3 bases long with weight 2
393s    1 101 
393s Computing hash parameters...
393s Using 4 hashbits
393s  0%......... (T -0.101 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.091 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.078 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.068 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.056 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.045 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 91%........
393s Acceptable hash function found after 1000 cycles.
393s Best uses 2/2 bases and has 0 empties from 2 inputs.
393s Score: 0.96875 (cf. worst: -4.51562)
393s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
393s Total correlation penalty: 0
393s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
393s                                             10
393s                                             ==
393s w[ 0]>>29:                                 -.C
393s w[ 0]>>30:                                  A.-
393s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
393s Ecolist (optimistic): Expcted entries per list: 9
393s Ecolist (optimistic): Minimum chunks per list: 4
393s Would take minimum 256.000000 bytes to make perfect hash.
393s Hashing 5.15 KB of sequence requires: 
393s  ~ linear (in seq length) hashing cost of 9.01 KB
393s  ~ linear (in seq length) expected anchor cost of 123.56 KB
393s Initial hash table uses: 256 bytes (4 bits, 16 entries)
393s Expected memory usage (without anchors): 9.26 KB
393s Expected memory usage (with anchors): 132.82 KB
393s Hash parameters computed in 0.112 seconds
393s Creating storage structures: 16 entries in 256 bytes space.
393s Storage structures created in: 0.000 seconds
393s 
393s Hashing NZ_GG705091.fna forwards
393s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705091.fna backwards
393s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705091.gbk forwards
393s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705091.gbk backwards
393s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Initial hashing took: 0.003 seconds
393s Extracting anchors from hash-space.
393s  (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s  6%. (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 18%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 31%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 68%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 93%.
393s Anchor extraction completed in: 0.003 seconds
393s Total anchors: 0
393s Anchor extraction + merge time: 0.003 seconds
393s Total processing time: 0.119 seconds
393s Writing anchors...
393s Total seeds used in anchors: 16
393s Hash performance:
393s  Keys used: 16 out of 16 possible (100.00%).
393s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
393s  Average pigeons per pigeon hole: 1
393s Writing 16 repeats...Output writing finished in: 0.001 seconds
393s Total time: 0.120 seconds
393s Murasaki finished!
393s PASSED MURASAKI
393s 
393s Testing Genepare on NZ_GG705091.fna
393s 319
393s PASSED GENEPARSE
393s 
393s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
393s Testing mbfa on NZ_GG705091.fna
393s PASSED mbfa
393s 
393s Test Murasaki on NZ_GG705092.fna
393s Verbosity level is: 0
393s Writing to: output/test
393s Pattern is: 101
393s Max usable hash bits: 27
393s Hit filter is: 0
393s Hash table type is: EcoHash
393s Hashing every: 1 base
393s Histogram detail is: 0
393s Hashing function is: 3
393s Collision profiling is: disabled
393s Repeats are: unmasked
393s Mergefilter is at: 100
393s Random seed: 1711203599 (automatic)
393s Bitscore output: on
393s Leave status records: no
393s Join neighbors is: off
393s Target memory is: 1.30 GB
393s Retain members is: true
393s Store repeatmap? yes
393s Reverse complement data is generated on the fly
393s Rifts allowed: 0
393s Fuzzy Extension: yes
393s Score by minimum pair: yes
393s Gapped anchors: no
393s Large sequence support is: enabled => seqpos is 8 bytes
393s Murasaki version 1.68.6 (LARGESEQ)
393s Loading NZ_GG705092.fna
393s Read 1283bp (1.25 KBp) in 0.000 seconds (4.7 MBp/s)
393s Done with forward strand (1283bp). Preparing reverse complement...
393s  <-> Reversing metdata.
393s Done.
393s Seq NZ_GG705092.fna loaded. 1.25 KB
393s Loading NZ_GG705092.gbk
393s Read 1283bp (1.25 KBp) in 0.000 seconds (6.1 MBp/s)
393s Done with forward strand (1283bp). Preparing reverse complement...
393s  <-> Reversing metdata.
393s Done.
393s Seq NZ_GG705092.gbk loaded. 1.25 KB
393s Sequence loading took: 0.000 seconds
393s Forward frequencies:  A:23.6945%  C:21.0444%  G:25.3313%  T:29.9299%
393s Global base frequencies:  A/T:53.6243%  C/G:46.3757%
393s Pat: 3 bases long with weight 2
393s    1 101 
393s Computing hash parameters...
393s Using 4 hashbits
393s  0%......... (T -0.104 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.091 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.079 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.047 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.024 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 91%........
393s Acceptable hash function found after 1000 cycles.
393s Best uses 2/2 bases and has 0 empties from 2 inputs.
393s Score: 0.96875 (cf. worst: -4.51562)
393s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
393s Total correlation penalty: 0
393s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
393s                                             10
393s                                             ==
393s w[ 0]>>29:                                 -.C
393s w[ 0]>>30:                                  A.-
393s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
393s Ecolist (optimistic): Expcted entries per list: 9
393s Ecolist (optimistic): Minimum chunks per list: 4
393s Would take minimum 256.000000 bytes to make perfect hash.
393s Hashing 5.01 KB of sequence requires: 
393s  ~ linear (in seq length) hashing cost of 8.76 KB
393s  ~ linear (in seq length) expected anchor cost of 120.28 KB
393s Initial hash table uses: 256 bytes (4 bits, 16 entries)
393s Expected memory usage (without anchors): 9.01 KB
393s Expected memory usage (with anchors): 129.29 KB
393s Hash parameters computed in 0.118 seconds
393s Creating storage structures: 16 entries in 256 bytes space.
393s Storage structures created in: 0.000 seconds
393s 
393s Hashing NZ_GG705092.fna forwards
393s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705092.fna backwards
393s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705092.gbk forwards
393s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705092.gbk backwards
393s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Initial hashing took: 0.005 seconds
393s Extracting anchors from hash-space.
393s  (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 18%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 93%.
393s Anchor extraction completed in: 0.002 seconds
393s Total anchors: 0
393s Anchor extraction + merge time: 0.002 seconds
393s Total processing time: 0.126 seconds
393s Writing anchors...
393s Total seeds used in anchors: 16
393s Hash performance:
393s  Keys used: 16 out of 16 possible (100.00%).
393s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
393s  Average pigeons per pigeon hole: 1
393s Writing 16 repeats...Output writing finished in: 0.001 seconds
393s Total time: 0.127 seconds
393s Murasaki finished!
393s PASSED MURASAKI
393s 
393s Testing Genepare on NZ_GG705092.fna
393s 284
393s PASSED GENEPARSE
393s 
393s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
393s Testing mbfa on NZ_GG705092.fna
393s PASSED mbfa
393s 
393s Test Murasaki on NZ_GG705093.fna
393s Verbosity level is: 0
393s Writing to: output/test
393s Pattern is: 101
393s Max usable hash bits: 27
393s Hit filter is: 0
393s Hash table type is: EcoHash
393s Hashing every: 1 base
393s Histogram detail is: 0
393s Hashing function is: 3
393s Collision profiling is: disabled
393s Repeats are: unmasked
393s Mergefilter is at: 100
393s Random seed: 1711203599 (automatic)
393s Bitscore output: on
393s Leave status records: no
393s Join neighbors is: off
393s Target memory is: 1.30 GB
393s Retain members is: true
393s Store repeatmap? yes
393s Reverse complement data is generated on the fly
393s Rifts allowed: 0
393s Fuzzy Extension: yes
393s Score by minimum pair: yes
393s Gapped anchors: no
393s Large sequence support is: enabled => seqpos is 8 bytes
393s Murasaki version 1.68.6 (LARGESEQ)
393s Loading NZ_GG705093.fna
393s Read 1180bp (1.15 KBp) in 0.000 seconds (3.9 MBp/s)
393s Done with forward strand (1180bp). Preparing reverse complement...
393s  <-> Reversing metdata.
393s Done.
393s Seq NZ_GG705093.fna loaded. 1.15 KB
393s Loading NZ_GG705093.gbk
393s Read 1180bp (1.15 KBp) in 0.000 seconds (5.0 MBp/s)
393s Done with forward strand (1180bp). Preparing reverse complement...
393s  <-> Reversing metdata.
393s Done.
393s Seq NZ_GG705093.gbk loaded. 1.15 KB
393s Sequence loading took: 0.001 seconds
393s Forward frequencies:  A:31.9492%  C:16.1017%  G:19.8305%  T:32.1186%
393s Global base frequencies:  A/T:64.0678%  C/G:35.9322%
393s Pat: 3 bases long with weight 2
393s    1 101 
393s Computing hash parameters...
393s Using 4 hashbits
393s  0%......... (T -0.123 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.099 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.083 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.070 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.057 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.024 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 91%........
393s Acceptable hash function found after 1000 cycles.
393s Best uses 2/2 bases and has 0 empties from 2 inputs.
393s Score: 0.96875 (cf. worst: -4.51562)
393s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
393s Total correlation penalty: 0
393s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
393s                                             10
393s                                             ==
393s w[ 0]>>29:                                 -.C
393s w[ 0]>>30:                                  A.-
393s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
393s Ecolist (optimistic): Expcted entries per list: 9
393s Ecolist (optimistic): Minimum chunks per list: 4
393s Would take minimum 256.000000 bytes to make perfect hash.
393s Hashing 4.61 KB of sequence requires: 
393s  ~ linear (in seq length) hashing cost of 8.07 KB
393s  ~ linear (in seq length) expected anchor cost of 110.62 KB
393s Initial hash table uses: 256 bytes (4 bits, 16 entries)
393s Expected memory usage (without anchors): 8.32 KB
393s Expected memory usage (with anchors): 118.94 KB
393s Hash parameters computed in 0.118 seconds
393s Creating storage structures: 16 entries in 256 bytes space.
393s Storage structures created in: 0.000 seconds
393s 
393s Hashing NZ_GG705093.fna forwards
393s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705093.fna backwards
393s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705093.gbk forwards
393s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705093.gbk backwards
393s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Initial hashing took: 0.004 seconds
393s Extracting anchors from hash-space.
393s  (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s  6%. (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 18%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 93%.
393s Anchor extraction completed in: 0.002 seconds
393s Total anchors: 0
393s Anchor extraction + merge time: 0.002 seconds
393s Total processing time: 0.125 seconds
393s Writing anchors...
393s Total seeds used in anchors: 16
393s Hash performance:
393s  Keys used: 16 out of 16 possible (100.00%).
393s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
393s  Average pigeons per pigeon hole: 1
393s Writing 16 repeats...Output writing finished in: 0.001 seconds
393s Total time: 0.126 seconds
393s Murasaki finished!
393s PASSED MURASAKI
393s 
393s Testing Genepare on NZ_GG705093.fna
393s 181
393s PASSED GENEPARSE
393s 
393s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
393s Testing mbfa on NZ_GG705093.fna
393s PASSED mbfa
393s 
393s Test Murasaki on NZ_GG705094.fna
393s Verbosity level is: 0
393s Writing to: output/test
393s Pattern is: 101
393s Max usable hash bits: 27
393s Hit filter is: 0
393s Hash table type is: EcoHash
393s Hashing every: 1 base
393s Histogram detail is: 0
393s Hashing function is: 3
393s Collision profiling is: disabled
393s Repeats are: unmasked
393s Mergefilter is at: 100
393s Random seed: 1711203599 (automatic)
393s Bitscore output: on
393s Leave status records: no
393s Join neighbors is: off
393s Target memory is: 1.30 GB
393s Retain members is: true
393s Store repeatmap? yes
393s Reverse complement data is generated on the fly
393s Rifts allowed: 0
393s Fuzzy Extension: yes
393s Score by minimum pair: yes
393s Gapped anchors: no
393s Large sequence support is: enabled => seqpos is 8 bytes
393s Murasaki version 1.68.6 (LARGESEQ)
393s Loading NZ_GG705094.fna
393s Read 1153bp (1.13 KBp) in 0.000 seconds (4.2 MBp/s)
393s Done with forward strand (1153bp). Preparing reverse complement...
393s  <-> Reversing metdata.
393s Done.
393s Seq NZ_GG705094.fna loaded. 1.13 KB
393s Loading NZ_GG705094.gbk
393s Read 1153bp (1.13 KBp) in 0.000 seconds (5.8 MBp/s)
393s Done with forward strand (1153bp). Preparing reverse complement...
393s  <-> Reversing metdata.
393s Done.
393s Seq NZ_GG705094.gbk loaded. 1.13 KB
393s Sequence loading took: 0.000 seconds
393s Forward frequencies:  A:27.8404%  C:21.4224%  G:19.7745%  T:30.9627%
393s Global base frequencies:  A/T:58.8031%  C/G:41.1969%
393s Pat: 3 bases long with weight 2
393s    1 101 
393s Computing hash parameters...
393s Using 4 hashbits
393s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.100 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.085 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.070 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.058 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 91%........
393s Acceptable hash function found after 1000 cycles.
393s Best uses 2/2 bases and has 0 empties from 2 inputs.
393s Score: 0.96875 (cf. worst: -4.51562)
393s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
393s Total correlation penalty: 0
393s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
393s                                             10
393s                                             ==
393s w[ 0]>>29:                                 -.C
393s w[ 0]>>30:                                  A.-
393s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
393s Ecolist (optimistic): Expcted entries per list: 9
393s Ecolist (optimistic): Minimum chunks per list: 4
393s Would take minimum 256.000000 bytes to make perfect hash.
393s Hashing 4.50 KB of sequence requires: 
393s  ~ linear (in seq length) hashing cost of 7.88 KB
393s  ~ linear (in seq length) expected anchor cost of 108.09 KB
393s Initial hash table uses: 256 bytes (4 bits, 16 entries)
393s Expected memory usage (without anchors): 8.12 KB
393s Expected memory usage (with anchors): 116.22 KB
393s Hash parameters computed in 0.114 seconds
393s Creating storage structures: 16 entries in 256 bytes space.
393s Storage structures created in: 0.000 seconds
393s 
393s Hashing NZ_GG705094.fna forwards
393s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%........
393s Hashing NZ_GG705094.fna backwards
393s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%........
393s Hashing NZ_GG705094.gbk forwards
393s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%........
393s Hashing NZ_GG705094.gbk backwards
393s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%........
393s Initial hashing took: 0.006 seconds
393s Extracting anchors from hash-space.
393s  (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 18%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 93%.
393s Anchor extraction completed in: 0.002 seconds
393s Total anchors: 0
393s Anchor extraction + merge time: 0.002 seconds
393s Total processing time: 0.123 seconds
393s Writing anchors...
393s Total seeds used in anchors: 16
393s Hash performance:
393s  Keys used: 16 out of 16 possible (100.00%).
393s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
393s  Average pigeons per pigeon hole: 1
393s Writing 16 repeats...Output writing finished in: 0.001 seconds
393s Total time: 0.123 seconds
393s Murasaki finished!
393s PASSED MURASAKI
393s 
393s Testing Genepare on NZ_GG705094.fna
393s 154
393s PASSED GENEPARSE
393s 
393s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
393s Testing mbfa on NZ_GG705094.fna
393s PASSED mbfa
393s 
393s Test Murasaki on NZ_GG705095.fna
393s Verbosity level is: 0
393s Writing to: output/test
393s Pattern is: 101
393s Max usable hash bits: 27
393s Hit filter is: 0
393s Hash table type is: EcoHash
393s Hashing every: 1 base
393s Histogram detail is: 0
393s Hashing function is: 3
393s Collision profiling is: disabled
393s Repeats are: unmasked
393s Mergefilter is at: 100
393s Random seed: 1711203599 (automatic)
393s Bitscore output: on
393s Leave status records: no
393s Join neighbors is: off
393s Target memory is: 1.30 GB
393s Retain members is: true
393s Store repeatmap? yes
393s Reverse complement data is generated on the fly
393s Rifts allowed: 0
393s Fuzzy Extension: yes
393s Score by minimum pair: yes
393s Gapped anchors: no
393s Large sequence support is: enabled => seqpos is 8 bytes
393s Murasaki version 1.68.6 (LARGESEQ)
393s Loading NZ_GG705095.fna
393s Read 1093bp (1.07 KBp) in 0.000 seconds (4.0 MBp/s)
393s Done with forward strand (1093bp). Preparing reverse complement...
393s  <-> Reversing metdata.
393s Done.
393s Seq NZ_GG705095.fna loaded. 1.07 KB
393s Loading NZ_GG705095.gbk
393s Read 1093bp (1.07 KBp) in 0.000 seconds (5.6 MBp/s)
393s Done with forward strand (1093bp). Preparing reverse complement...
393s  <-> Reversing metdata.
393s Done.
393s Seq NZ_GG705095.gbk loaded. 1.07 KB
393s Sequence loading took: 0.000 seconds
393s Forward frequencies:  A:33.1199%  C:16.8344%  G:21.043%  T:29.0027%
393s Global base frequencies:  A/T:62.1226%  C/G:37.8774%
393s Pat: 3 bases long with weight 2
393s    1 101 
393s Computing hash parameters...
393s Using 4 hashbits
393s  0%......... (T -0.099 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.090 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.078 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 91%........
393s Acceptable hash function found after 1000 cycles.
393s Best uses 2/2 bases and has 0 empties from 2 inputs.
393s Score: 0.96875 (cf. worst: -4.51562)
393s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
393s Total correlation penalty: 0
393s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
393s                                             10
393s                                             ==
393s w[ 0]>>29:                                 -.C
393s w[ 0]>>30:                                  A.-
393s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
393s Ecolist (optimistic): Expcted entries per list: 9
393s Ecolist (optimistic): Minimum chunks per list: 4
393s Would take minimum 256.000000 bytes to make perfect hash.
393s Hashing 4.27 KB of sequence requires: 
393s  ~ linear (in seq length) hashing cost of 7.46 KB
393s  ~ linear (in seq length) expected anchor cost of 102.47 KB
393s Initial hash table uses: 256 bytes (4 bits, 16 entries)
393s Expected memory usage (without anchors): 7.71 KB
393s Expected memory usage (with anchors): 110.18 KB
393s Hash parameters computed in 0.108 seconds
393s Creating storage structures: 16 entries in 256 bytes space.
393s Storage structures created in: 0.000 seconds
393s 
393s Hashing NZ_GG705095.fna forwards
393s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705095.fna backwards
393s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705095.gbk forwards
393s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Hashing NZ_GG705095.gbk backwards
393s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 90%.........
393s Initial hashing took: 0.010 seconds
393s Extracting anchors from hash-space.
393s  (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s  6%. (T -0.003 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 18%. (T -0.002 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:19:59 2024
393s 93%.
393s Anchor extraction completed in: 0.002 seconds
393s Total anchors: 0
393s Anchor extraction + merge time: 0.002 seconds
393s Total processing time: 0.122 seconds
393s Writing anchors...
393s Total seeds used in anchors: 16
393s Hash performance:
393s  Keys used: 16 out of 16 possible (100.00%).
393s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
393s  Average pigeons per pigeon hole: 1
393s Writing 16 repeats...Output writing finished in: 0.001 seconds
393s Total time: 0.122 seconds
393s Murasaki finished!
393s PASSED MURASAKI
393s 
393s Testing Genepare on NZ_GG705095.fna
393s 94
393s PASSED GENEPARSE
393s 
394s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
394s Testing mbfa on NZ_GG705095.fna
394s PASSED mbfa
394s 
394s Test Murasaki on NZ_GG705096.fna
394s Verbosity level is: 0
394s Writing to: output/test
394s Pattern is: 101
394s Max usable hash bits: 27
394s Hit filter is: 0
394s Hash table type is: EcoHash
394s Hashing every: 1 base
394s Histogram detail is: 0
394s Hashing function is: 3
394s Collision profiling is: disabled
394s Repeats are: unmasked
394s Mergefilter is at: 100
394s Random seed: 1711203599 (automatic)
394s Bitscore output: on
394s Leave status records: no
394s Join neighbors is: off
394s Target memory is: 1.30 GB
394s Retain members is: true
394s Store repeatmap? yes
394s Reverse complement data is generated on the fly
394s Rifts allowed: 0
394s Fuzzy Extension: yes
394s Score by minimum pair: yes
394s Gapped anchors: no
394s Large sequence support is: enabled => seqpos is 8 bytes
394s Murasaki version 1.68.6 (LARGESEQ)
394s Loading NZ_GG705096.fna
394s Read 1046bp (1.02 KBp) in 0.000 seconds (3.8 MBp/s)
394s Done with forward strand (1046bp). Preparing reverse complement...
394s  <-> Reversing metdata.
394s Done.
394s Seq NZ_GG705096.fna loaded. 1.02 KB
394s Loading NZ_GG705096.gbk
394s Read 1046bp (1.02 KBp) in 0.000 seconds (5.5 MBp/s)
394s Done with forward strand (1046bp). Preparing reverse complement...
394s  <-> Reversing metdata.
394s Done.
394s Seq NZ_GG705096.gbk loaded. 1.02 KB
394s Sequence loading took: 0.000 seconds
394s Forward frequencies:  A:30.8795%  C:24.4742%  G:20.9369%  T:23.7094%
394s Global base frequencies:  A/T:54.5889%  C/G:45.4111%
394s Pat: 3 bases long with weight 2
394s    1 101 
394s Computing hash parameters...
394s Using 4 hashbits
394s  0%......... (T -0.105 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.094 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.081 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.068 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.057 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.045 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 91%........
394s Acceptable hash function found after 1000 cycles.
394s Best uses 2/2 bases and has 0 empties from 2 inputs.
394s Score: 0.96875 (cf. worst: -4.51562)
394s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
394s Total correlation penalty: 0
394s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
394s                                             10
394s                                             ==
394s w[ 0]>>29:                                 -.C
394s w[ 0]>>30:                                  A.-
394s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
394s Ecolist (optimistic): Expcted entries per list: 9
394s Ecolist (optimistic): Minimum chunks per list: 4
394s Would take minimum 256.000000 bytes to make perfect hash.
394s Hashing 4.09 KB of sequence requires: 
394s  ~ linear (in seq length) hashing cost of 7.15 KB
394s  ~ linear (in seq length) expected anchor cost of 98.06 KB
394s Initial hash table uses: 256 bytes (4 bits, 16 entries)
394s Expected memory usage (without anchors): 7.40 KB
394s Expected memory usage (with anchors): 105.46 KB
394s Hash parameters computed in 0.111 seconds
394s Creating storage structures: 16 entries in 256 bytes space.
394s Storage structures created in: 0.000 seconds
394s 
394s Hashing NZ_GG705096.fna forwards
394s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%........
394s Hashing NZ_GG705096.fna backwards
394s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%........
394s Hashing NZ_GG705096.gbk forwards
394s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%........
394s Hashing NZ_GG705096.gbk backwards
394s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%........
394s Initial hashing took: 0.003 seconds
394s Extracting anchors from hash-space.
394s  (T -0.003 seconds) ETA: Sat Mar 23 14:20:00 2024
394s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 93%.
394s Anchor extraction completed in: 0.002 seconds
394s Total anchors: 0
394s Anchor extraction + merge time: 0.002 seconds
394s Total processing time: 0.116 seconds
394s Writing anchors...
394s Total seeds used in anchors: 16
394s Hash performance:
394s  Keys used: 16 out of 16 possible (100.00%).
394s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
394s  Average pigeons per pigeon hole: 1
394s Writing 16 repeats...Output writing finished in: 0.001 seconds
394s Total time: 0.117 seconds
394s Murasaki finished!
394s PASSED MURASAKI
394s 
394s Testing Genepare on NZ_GG705096.fna
394s 47
394s PASSED GENEPARSE
394s 
394s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
394s Testing mbfa on NZ_GG705096.fna
394s PASSED mbfa
394s 
394s Test Murasaki on NZ_GG705097.fna
394s Verbosity level is: 0
394s Writing to: output/test
394s Pattern is: 101
394s Max usable hash bits: 27
394s Hit filter is: 0
394s Hash table type is: EcoHash
394s Hashing every: 1 base
394s Histogram detail is: 0
394s Hashing function is: 3
394s Collision profiling is: disabled
394s Repeats are: unmasked
394s Mergefilter is at: 100
394s Random seed: 1711203600 (automatic)
394s Bitscore output: on
394s Leave status records: no
394s Join neighbors is: off
394s Target memory is: 1.30 GB
394s Retain members is: true
394s Store repeatmap? yes
394s Reverse complement data is generated on the fly
394s Rifts allowed: 0
394s Fuzzy Extension: yes
394s Score by minimum pair: yes
394s Gapped anchors: no
394s Large sequence support is: enabled => seqpos is 8 bytes
394s Murasaki version 1.68.6 (LARGESEQ)
394s Loading NZ_GG705097.fna
394s Read 976bp (976 bytesp) in 0.001 seconds (1.4 MBp/s)
394s Done with forward strand (976bp). Preparing reverse complement...
394s  <-> Reversing metdata.
394s Done.
394s Seq NZ_GG705097.fna loaded. 976 bytes
394s Loading NZ_GG705097.gbk
394s Read 976bp (976 bytesp) in 0.000 seconds (4.0 MBp/s)
394s Done with forward strand (976bp). Preparing reverse complement...
394s  <-> Reversing metdata.
394s Done.
394s Seq NZ_GG705097.gbk loaded. 976 bytes
394s Sequence loading took: 0.001 seconds
394s Forward frequencies:  A:33.5041%  C:17.5205%  G:17.8279%  T:31.1475%
394s Global base frequencies:  A/T:64.6516%  C/G:35.3484%
394s Pat: 3 bases long with weight 2
394s    1 101 
394s Computing hash parameters...
394s Using 4 hashbits
394s  0%......... (T -0.123 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.099 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.083 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.073 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.061 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.048 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.024 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 91%........
394s Acceptable hash function found after 1000 cycles.
394s Best uses 2/2 bases and has 0 empties from 2 inputs.
394s Score: 0.96875 (cf. worst: -4.51562)
394s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
394s Total correlation penalty: 0
394s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
394s                                             10
394s                                             ==
394s w[ 0]>>29:                                 -.C
394s w[ 0]>>30:                                  A.-
394s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
394s Ecolist (optimistic): Expcted entries per list: 8
394s Ecolist (optimistic): Minimum chunks per list: 4
394s Would take minimum 256.000000 bytes to make perfect hash.
394s Hashing 3.81 KB of sequence requires: 
394s  ~ linear (in seq length) hashing cost of 6.20 KB
394s  ~ linear (in seq length) expected anchor cost of 91.50 KB
394s Initial hash table uses: 256 bytes (4 bits, 16 entries)
394s Expected memory usage (without anchors): 6.45 KB
394s Expected memory usage (with anchors): 97.95 KB
394s Hash parameters computed in 0.119 seconds
394s Creating storage structures: 16 entries in 256 bytes space.
394s Storage structures created in: 0.000 seconds
394s 
394s Hashing NZ_GG705097.fna forwards
394s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%.........
394s Hashing NZ_GG705097.fna backwards
394s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%.........
394s Hashing NZ_GG705097.gbk forwards
394s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%.........
394s Hashing NZ_GG705097.gbk backwards
394s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%.........
394s Initial hashing took: 0.008 seconds
394s Extracting anchors from hash-space.
394s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 93%.
394s Anchor extraction completed in: 0.002 seconds
394s Total anchors: 0
394s Anchor extraction + merge time: 0.002 seconds
394s Total processing time: 0.130 seconds
394s Writing anchors...
394s Total seeds used in anchors: 16
394s Hash performance:
394s  Keys used: 16 out of 16 possible (100.00%).
394s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
394s  Average pigeons per pigeon hole: 1
394s Writing 16 repeats...Output writing finished in: 0.001 seconds
394s Total time: 0.131 seconds
394s Murasaki finished!
394s PASSED MURASAKI
394s 
394s Testing Genepare on NZ_GG705097.fna
394s 18446744073709551593
394s PASSED GENEPARSE
394s 
394s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
394s Testing mbfa on NZ_GG705097.fna
394s PASSED mbfa
394s 
394s Test Murasaki on NZ_GG705098.fna
394s Verbosity level is: 0
394s Writing to: output/test
394s Pattern is: 101
394s Max usable hash bits: 27
394s Hit filter is: 0
394s Hash table type is: EcoHash
394s Hashing every: 1 base
394s Histogram detail is: 0
394s Hashing function is: 3
394s Collision profiling is: disabled
394s Repeats are: unmasked
394s Mergefilter is at: 100
394s Random seed: 1711203600 (automatic)
394s Bitscore output: on
394s Leave status records: no
394s Join neighbors is: off
394s Target memory is: 1.30 GB
394s Retain members is: true
394s Store repeatmap? yes
394s Reverse complement data is generated on the fly
394s Rifts allowed: 0
394s Fuzzy Extension: yes
394s Score by minimum pair: yes
394s Gapped anchors: no
394s Large sequence support is: enabled => seqpos is 8 bytes
394s Murasaki version 1.68.6 (LARGESEQ)
394s Loading NZ_GG705098.fna
394s Read 959bp (959 bytesp) in 0.000 seconds (3.5 MBp/s)
394s Done with forward strand (959bp). Preparing reverse complement...
394s  <-> Reversing metdata.
394s Done.
394s Seq NZ_GG705098.fna loaded. 959 bytes
394s Loading NZ_GG705098.gbk
394s Read 959bp (959 bytesp) in 0.000 seconds (4.4 MBp/s)
394s Done with forward strand (959bp). Preparing reverse complement...
394s  <-> Reversing metdata.
394s Done.
394s Seq NZ_GG705098.gbk loaded. 959 bytes
394s Sequence loading took: 0.001 seconds
394s Forward frequencies:  A:33.0553%  C:20.6465%  G:17.414%  T:28.8843%
394s Global base frequencies:  A/T:61.9395%  C/G:38.0605%
394s Pat: 3 bases long with weight 2
394s    1 101 
394s Computing hash parameters...
394s Using 4 hashbits
394s  0%......... (T -0.101 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.089 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 91%........
394s Acceptable hash function found after 1000 cycles.
394s Best uses 2/2 bases and has 0 empties from 2 inputs.
394s Score: 0.96875 (cf. worst: -4.51562)
394s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
394s Total correlation penalty: 0
394s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
394s                                             10
394s                                             ==
394s w[ 0]>>29:                                 -.C
394s w[ 0]>>30:                                  A.-
394s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
394s Ecolist (optimistic): Expcted entries per list: 8
394s Ecolist (optimistic): Minimum chunks per list: 4
394s Would take minimum 256.000000 bytes to make perfect hash.
394s Hashing 3.75 KB of sequence requires: 
394s  ~ linear (in seq length) hashing cost of 6.08 KB
394s  ~ linear (in seq length) expected anchor cost of 89.91 KB
394s Initial hash table uses: 256 bytes (4 bits, 16 entries)
394s Expected memory usage (without anchors): 6.33 KB
394s Expected memory usage (with anchors): 96.24 KB
394s Hash parameters computed in 0.110 seconds
394s Creating storage structures: 16 entries in 256 bytes space.
394s Storage structures created in: 0.000 seconds
394s 
394s Hashing NZ_GG705098.fna forwards
394s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%.........
394s Hashing NZ_GG705098.fna backwards
394s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%.........
394s Hashing NZ_GG705098.gbk forwards
394s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%.........
394s Hashing NZ_GG705098.gbk backwards
394s  0%......... (T -0.004 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%.........
394s Initial hashing took: 0.009 seconds
394s Extracting anchors from hash-space.
394s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 93%.
394s Anchor extraction completed in: 0.002 seconds
394s Total anchors: 0
394s Anchor extraction + merge time: 0.002 seconds
394s Total processing time: 0.122 seconds
394s Writing anchors...
394s Total seeds used in anchors: 16
394s Hash performance:
394s  Keys used: 16 out of 16 possible (100.00%).
394s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
394s  Average pigeons per pigeon hole: 1
394s Writing 16 repeats...Output writing finished in: 0.001 seconds
394s Total time: 0.122 seconds
394s Murasaki finished!
394s PASSED MURASAKI
394s 
394s Testing Genepare on NZ_GG705098.fna
394s 18446744073709551576
394s PASSED GENEPARSE
394s 
394s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
394s Testing mbfa on NZ_GG705098.fna
394s PASSED mbfa
394s 
394s Test Murasaki on NZ_GG705099.fna
394s Verbosity level is: 0
394s Writing to: output/test
394s Pattern is: 101
394s Max usable hash bits: 27
394s Hit filter is: 0
394s Hash table type is: EcoHash
394s Hashing every: 1 base
394s Histogram detail is: 0
394s Hashing function is: 3
394s Collision profiling is: disabled
394s Repeats are: unmasked
394s Mergefilter is at: 100
394s Random seed: 1711203600 (automatic)
394s Bitscore output: on
394s Leave status records: no
394s Join neighbors is: off
394s Target memory is: 1.30 GB
394s Retain members is: true
394s Store repeatmap? yes
394s Reverse complement data is generated on the fly
394s Rifts allowed: 0
394s Fuzzy Extension: yes
394s Score by minimum pair: yes
394s Gapped anchors: no
394s Large sequence support is: enabled => seqpos is 8 bytes
394s Murasaki version 1.68.6 (LARGESEQ)
394s Loading NZ_GG705099.fna
394s Read 927bp (927 bytesp) in 0.000 seconds (2.7 MBp/s)
394s Done with forward strand (927bp). Preparing reverse complement...
394s  <-> Reversing metdata.
394s Done.
394s Seq NZ_GG705099.fna loaded. 927 bytes
394s Loading NZ_GG705099.gbk
394s Read 927bp (927 bytesp) in 0.000 seconds (4.2 MBp/s)
394s Done with forward strand (927bp). Preparing reverse complement...
394s  <-> Reversing metdata.
394s Done.
394s Seq NZ_GG705099.gbk loaded. 927 bytes
394s Sequence loading took: 0.001 seconds
394s Forward frequencies:  A:32.2546%  C:16.5049%  G:12.6214%  T:38.6192%
394s Global base frequencies:  A/T:70.8738%  C/G:29.1262%
394s Pat: 3 bases long with weight 2
394s    1 101 
394s Computing hash parameters...
394s Using 4 hashbits
394s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 91%........
394s Acceptable hash function found after 1000 cycles.
394s Best uses 2/2 bases and has 0 empties from 2 inputs.
394s Score: 0.96875 (cf. worst: -4.51562)
394s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
394s Total correlation penalty: 0
394s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
394s                                             10
394s                                             ==
394s w[ 0]>>29:                                 -.C
394s w[ 0]>>30:                                  A.-
394s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
394s Ecolist (optimistic): Expcted entries per list: 8
394s Ecolist (optimistic): Minimum chunks per list: 4
394s Would take minimum 256.000000 bytes to make perfect hash.
394s Hashing 3.62 KB of sequence requires: 
394s  ~ linear (in seq length) hashing cost of 5.88 KB
394s  ~ linear (in seq length) expected anchor cost of 86.91 KB
394s Initial hash table uses: 256 bytes (4 bits, 16 entries)
394s Expected memory usage (without anchors): 6.13 KB
394s Expected memory usage (with anchors): 93.03 KB
394s Hash parameters computed in 0.115 seconds
394s Creating storage structures: 16 entries in 256 bytes space.
394s Storage structures created in: 0.000 seconds
394s 
394s Hashing NZ_GG705099.fna forwards
394s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%........
394s Hashing NZ_GG705099.fna backwards
394s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%........
394s Hashing NZ_GG705099.gbk forwards
394s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%........
394s Hashing NZ_GG705099.gbk backwards
394s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%........
394s Initial hashing took: 0.009 seconds
394s Extracting anchors from hash-space.
394s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 93%.
394s Anchor extraction completed in: 0.002 seconds
394s Total anchors: 0
394s Anchor extraction + merge time: 0.002 seconds
394s Total processing time: 0.127 seconds
394s Writing anchors...
394s Total seeds used in anchors: 16
394s Hash performance:
394s  Keys used: 16 out of 16 possible (100.00%).
394s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
394s  Average pigeons per pigeon hole: 1
394s Writing 16 repeats...Output writing finished in: 0.001 seconds
394s Total time: 0.128 seconds
394s Murasaki finished!
394s PASSED MURASAKI
394s 
394s Testing Genepare on NZ_GG705099.fna
394s 18446744073709551544
394s PASSED GENEPARSE
394s 
394s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
394s Testing mbfa on NZ_GG705099.fna
394s PASSED mbfa
394s 
394s Test Murasaki on NZ_GG705100.fna
394s Verbosity level is: 0
394s Writing to: output/test
394s Pattern is: 101
394s Max usable hash bits: 27
394s Hit filter is: 0
394s Hash table type is: EcoHash
394s Hashing every: 1 base
394s Histogram detail is: 0
394s Hashing function is: 3
394s Collision profiling is: disabled
394s Repeats are: unmasked
394s Mergefilter is at: 100
394s Random seed: 1711203600 (automatic)
394s Bitscore output: on
394s Leave status records: no
394s Join neighbors is: off
394s Target memory is: 1.30 GB
394s Retain members is: true
394s Store repeatmap? yes
394s Reverse complement data is generated on the fly
394s Rifts allowed: 0
394s Fuzzy Extension: yes
394s Score by minimum pair: yes
394s Gapped anchors: no
394s Large sequence support is: enabled => seqpos is 8 bytes
394s Murasaki version 1.68.6 (LARGESEQ)
394s Loading NZ_GG705100.fna
394s Read 885bp (885 bytesp) in 0.000 seconds (2.3 MBp/s)
394s Done with forward strand (885bp). Preparing reverse complement...
394s  <-> Reversing metdata.
394s Done.
394s Seq NZ_GG705100.fna loaded. 885 bytes
394s Loading NZ_GG705100.gbk
394s Read 885bp (885 bytesp) in 0.000 seconds (3.1 MBp/s)
394s Done with forward strand (885bp). Preparing reverse complement...
394s  <-> Reversing metdata.
394s Done.
394s Seq NZ_GG705100.gbk loaded. 885 bytes
394s Sequence loading took: 0.001 seconds
394s Forward frequencies:  A:26.6667%  C:18.9831%  G:15.5932%  T:38.7571%
394s Global base frequencies:  A/T:65.4237%  C/G:34.5763%
394s Pat: 3 bases long with weight 2
394s    1 101 
394s Computing hash parameters...
394s Using 4 hashbits
394s  0%......... (T -0.102 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.090 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.090 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.074 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.061 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.048 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.036 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.024 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 91%........
394s Acceptable hash function found after 1000 cycles.
394s Best uses 2/2 bases and has 0 empties from 2 inputs.
394s Score: 0.96875 (cf. worst: -4.51562)
394s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
394s Total correlation penalty: 0
394s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
394s                                             10
394s                                             ==
394s w[ 0]>>29:                                 -.C
394s w[ 0]>>30:                                  A.-
394s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
394s Ecolist (optimistic): Expcted entries per list: 8
394s Ecolist (optimistic): Minimum chunks per list: 4
394s Would take minimum 256.000000 bytes to make perfect hash.
394s Hashing 3.46 KB of sequence requires: 
394s  ~ linear (in seq length) hashing cost of 5.61 KB
394s  ~ linear (in seq length) expected anchor cost of 82.97 KB
394s Initial hash table uses: 256 bytes (4 bits, 16 entries)
394s Expected memory usage (without anchors): 5.86 KB
394s Expected memory usage (with anchors): 88.83 KB
394s Hash parameters computed in 0.119 seconds
394s Creating storage structures: 16 entries in 256 bytes space.
394s Storage structures created in: 0.000 seconds
394s 
394s Hashing NZ_GG705100.fna forwards
394s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%........
394s Hashing NZ_GG705100.fna backwards
394s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%........
394s Hashing NZ_GG705100.gbk forwards
394s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%........
394s Hashing NZ_GG705100.gbk backwards
394s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 90%........
394s Initial hashing took: 0.002 seconds
394s Extracting anchors from hash-space.
394s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 93%.
394s Anchor extraction completed in: 0.002 seconds
394s Total anchors: 0
394s Anchor extraction + merge time: 0.002 seconds
394s Total processing time: 0.124 seconds
394s Writing anchors...
394s Total seeds used in anchors: 16
394s Hash performance:
394s  Keys used: 16 out of 16 possible (100.00%).
394s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
394s  Average pigeons per pigeon hole: 1
394s Writing 16 repeats...Output writing finished in: 0.001 seconds
394s Total time: 0.125 seconds
394s Murasaki finished!
394s PASSED MURASAKI
394s 
394s Testing Genepare on NZ_GG705100.fna
394s 18446744073709551502
394s PASSED GENEPARSE
394s 
394s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
394s Testing mbfa on NZ_GG705100.fna
394s PASSED mbfa
394s 
394s Test Murasaki on NZ_GG705101.fna
394s Verbosity level is: 0
394s Writing to: output/test
394s Pattern is: 101
394s Max usable hash bits: 27
394s Hit filter is: 0
394s Hash table type is: EcoHash
394s Hashing every: 1 base
394s Histogram detail is: 0
394s Hashing function is: 3
394s Collision profiling is: disabled
394s Repeats are: unmasked
394s Mergefilter is at: 100
394s Random seed: 1711203600 (automatic)
394s Bitscore output: on
394s Leave status records: no
394s Join neighbors is: off
394s Target memory is: 1.30 GB
394s Retain members is: true
394s Store repeatmap? yes
394s Reverse complement data is generated on the fly
394s Rifts allowed: 0
394s Fuzzy Extension: yes
394s Score by minimum pair: yes
394s Gapped anchors: no
394s Large sequence support is: enabled => seqpos is 8 bytes
394s Murasaki version 1.68.6 (LARGESEQ)
394s Loading NZ_GG705101.fna
394s Read 832bp (832 bytesp) in 0.000 seconds (2.9 MBp/s)
394s Done with forward strand (832bp). Preparing reverse complement...
394s  <-> Reversing metdata.
394s Done.
394s Seq NZ_GG705101.fna loaded. 832 bytes
394s Loading NZ_GG705101.gbk
394s Read 832bp (832 bytesp) in 0.000 seconds (3.7 MBp/s)
394s Done with forward strand (832bp). Preparing reverse complement...
394s  <-> Reversing metdata.
394s Done.
394s Seq NZ_GG705101.gbk loaded. 832 bytes
394s Sequence loading took: 0.001 seconds
394s Forward frequencies:  A:33.6538%  C:15.9856%  G:18.149%  T:32.2115%
394s Global base frequencies:  A/T:65.8654%  C/G:34.1346%
394s Pat: 3 bases long with weight 2
394s    1 101 
394s Computing hash parameters...
394s Using 4 hashbits
394s  0%......... (T -0.098 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.092 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.081 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.069 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.058 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 91%........
394s Acceptable hash function found after 1000 cycles.
394s Best uses 2/2 bases and has 0 empties from 2 inputs.
394s Score: 0.96875 (cf. worst: -4.51562)
394s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
394s Total correlation penalty: 0
394s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
394s                                             10
394s                                             ==
394s w[ 0]>>29:                                 -.C
394s w[ 0]>>30:                                  A.-
394s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
394s Ecolist (optimistic): Expcted entries per list: 8
394s Ecolist (optimistic): Minimum chunks per list: 4
394s Would take minimum 256.000000 bytes to make perfect hash.
394s Hashing 3.25 KB of sequence requires: 
394s  ~ linear (in seq length) hashing cost of 5.28 KB
394s  ~ linear (in seq length) expected anchor cost of 78.00 KB
394s Initial hash table uses: 256 bytes (4 bits, 16 entries)
394s Expected memory usage (without anchors): 5.53 KB
394s Expected memory usage (with anchors): 83.53 KB
394s Hash parameters computed in 0.113 seconds
394s Creating storage structures: 16 entries in 256 bytes space.
394s Storage structures created in: 0.000 seconds
394s 
394s Hashing NZ_GG705101.fna forwards
394s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 91%........
394s Hashing NZ_GG705101.fna backwards
394s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 91%........
394s Hashing NZ_GG705101.gbk forwards
394s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 91%........
394s Hashing NZ_GG705101.gbk backwards
394s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 91%........
394s Initial hashing took: 0.004 seconds
394s Extracting anchors from hash-space.
394s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:00 2024
394s 93%.
394s Anchor extraction completed in: 0.001 seconds
394s Total anchors: 0
394s Anchor extraction + merge time: 0.001 seconds
394s Total processing time: 0.119 seconds
394s Writing anchors...
394s Total seeds used in anchors: 16
394s Hash performance:
394s  Keys used: 16 out of 16 possible (100.00%).
394s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
394s  Average pigeons per pigeon hole: 1
394s Writing 16 repeats...Output writing finished in: 0.001 seconds
394s Total time: 0.119 seconds
394s Murasaki finished!
394s PASSED MURASAKI
394s 
394s Testing Genepare on NZ_GG705101.fna
394s 18446744073709551449
394s PASSED GENEPARSE
394s 
394s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
394s Testing mbfa on NZ_GG705101.fna
394s PASSED mbfa
394s 
394s Test Murasaki on NZ_GG705102.fna
394s Verbosity level is: 0
394s Writing to: output/test
394s Pattern is: 101
394s Max usable hash bits: 27
394s Hit filter is: 0
394s Hash table type is: EcoHash
394s Hashing every: 1 base
394s Histogram detail is: 0
394s Hashing function is: 3
394s Collision profiling is: disabled
394s Repeats are: unmasked
394s Mergefilter is at: 100
394s Random seed: 1711203600 (automatic)
394s Bitscore output: on
394s Leave status records: no
394s Join neighbors is: off
394s Target memory is: 1.30 GB
394s Retain members is: true
394s Store repeatmap? yes
394s Reverse complement data is generated on the fly
394s Rifts allowed: 0
394s Fuzzy Extension: yes
394s Score by minimum pair: yes
394s Gapped anchors: no
394s Large sequence support is: enabled => seqpos is 8 bytes
394s Murasaki version 1.68.6 (LARGESEQ)
394s Loading NZ_GG705102.fna
395s Read 828bp (828 bytesp) in 0.000 seconds (2.8 MBp/s)
395s Done with forward strand (828bp). Preparing reverse complement...
395s  <-> Reversing metdata.
395s Done.
395s Seq NZ_GG705102.fna loaded. 828 bytes
395s Loading NZ_GG705102.gbk
395s Read 828bp (828 bytesp) in 0.000 seconds (3.8 MBp/s)
395s Done with forward strand (828bp). Preparing reverse complement...
395s  <-> Reversing metdata.
395s Done.
395s Seq NZ_GG705102.gbk loaded. 828 bytes
395s Sequence loading took: 0.001 seconds
395s Forward frequencies:  A:29.8309%  C:22.4638%  G:25%  T:22.7053%
395s Global base frequencies:  A/T:52.5362%  C/G:47.4638%
395s Pat: 3 bases long with weight 2
395s    1 101 
395s Computing hash parameters...
395s Using 4 hashbits
395s  0%......... (T -0.098 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.076 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.065 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.045 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%........
395s Acceptable hash function found after 1000 cycles.
395s Best uses 2/2 bases and has 0 empties from 2 inputs.
395s Score: 0.96875 (cf. worst: -4.51562)
395s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
395s Total correlation penalty: 0
395s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
395s                                             10
395s                                             ==
395s w[ 0]>>29:                                 -.C
395s w[ 0]>>30:                                  A.-
395s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
395s Ecolist (optimistic): Expcted entries per list: 8
395s Ecolist (optimistic): Minimum chunks per list: 4
395s Would take minimum 256.000000 bytes to make perfect hash.
395s Hashing 3.23 KB of sequence requires: 
395s  ~ linear (in seq length) hashing cost of 5.26 KB
395s  ~ linear (in seq length) expected anchor cost of 77.62 KB
395s Initial hash table uses: 256 bytes (4 bits, 16 entries)
395s Expected memory usage (without anchors): 5.51 KB
395s Expected memory usage (with anchors): 83.13 KB
395s Hash parameters computed in 0.112 seconds
395s Creating storage structures: 16 entries in 256 bytes space.
395s Storage structures created in: 0.000 seconds
395s 
395s Hashing NZ_GG705102.fna forwards
395s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 90%........
395s Hashing NZ_GG705102.fna backwards
395s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 90%........
395s Hashing NZ_GG705102.gbk forwards
395s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 90%........
395s Hashing NZ_GG705102.gbk backwards
395s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 90%........
395s Initial hashing took: 0.004 seconds
395s Extracting anchors from hash-space.
395s  (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 93%.
395s Anchor extraction completed in: 0.001 seconds
395s Total anchors: 0
395s Anchor extraction + merge time: 0.001 seconds
395s Total processing time: 0.119 seconds
395s Writing anchors...
395s Total seeds used in anchors: 16
395s Hash performance:
395s  Keys used: 16 out of 16 possible (100.00%).
395s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
395s  Average pigeons per pigeon hole: 1
395s Writing 16 repeats...Output writing finished in: 0.001 seconds
395s Total time: 0.119 seconds
395s Murasaki finished!
395s PASSED MURASAKI
395s 
395s Testing Genepare on NZ_GG705102.fna
395s 18446744073709551445
395s PASSED GENEPARSE
395s 
395s Testing mbfa on NZ_GG705102.fna
395s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
395s PASSED mbfa
395s 
395s Test Murasaki on NZ_GG705103.fna
395s Verbosity level is: 0
395s Writing to: output/test
395s Pattern is: 101
395s Max usable hash bits: 27
395s Hit filter is: 0
395s Hash table type is: EcoHash
395s Hashing every: 1 base
395s Histogram detail is: 0
395s Hashing function is: 3
395s Collision profiling is: disabled
395s Repeats are: unmasked
395s Mergefilter is at: 100
395s Random seed: 1711203601 (automatic)
395s Bitscore output: on
395s Leave status records: no
395s Join neighbors is: off
395s Target memory is: 1.30 GB
395s Retain members is: true
395s Store repeatmap? yes
395s Reverse complement data is generated on the fly
395s Rifts allowed: 0
395s Fuzzy Extension: yes
395s Score by minimum pair: yes
395s Gapped anchors: no
395s Large sequence support is: enabled => seqpos is 8 bytes
395s Murasaki version 1.68.6 (LARGESEQ)
395s Loading NZ_GG705103.fna
395s Read 828bp (828 bytesp) in 0.000 seconds (2.7 MBp/s)
395s Done with forward strand (828bp). Preparing reverse complement...
395s  <-> Reversing metdata.
395s Done.
395s Seq NZ_GG705103.fna loaded. 828 bytes
395s Loading NZ_GG705103.gbk
395s Read 828bp (828 bytesp) in 0.000 seconds (3.7 MBp/s)
395s Done with forward strand (828bp). Preparing reverse complement...
395s  <-> Reversing metdata.
395s Done.
395s Seq NZ_GG705103.gbk loaded. 828 bytes
395s Sequence loading took: 0.001 seconds
395s Forward frequencies:  A:31.1594%  C:20.6522%  G:22.2222%  T:25.9662%
395s Global base frequencies:  A/T:57.1256%  C/G:42.8744%
395s Pat: 3 bases long with weight 2
395s    1 101 
395s Computing hash parameters...
395s Using 4 hashbits
395s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%........
395s Acceptable hash function found after 1000 cycles.
395s Best uses 2/2 bases and has 0 empties from 2 inputs.
395s Score: 0.96875 (cf. worst: -4.51562)
395s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
395s Total correlation penalty: 0
395s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
395s                                             10
395s                                             ==
395s w[ 0]>>29:                                 -.C
395s w[ 0]>>30:                                  A.-
395s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
395s Ecolist (optimistic): Expcted entries per list: 8
395s Ecolist (optimistic): Minimum chunks per list: 4
395s Would take minimum 256.000000 bytes to make perfect hash.
395s Hashing 3.23 KB of sequence requires: 
395s  ~ linear (in seq length) hashing cost of 5.26 KB
395s  ~ linear (in seq length) expected anchor cost of 77.62 KB
395s Initial hash table uses: 256 bytes (4 bits, 16 entries)
395s Expected memory usage (without anchors): 5.51 KB
395s Expected memory usage (with anchors): 83.13 KB
395s Hash parameters computed in 0.110 seconds
395s Creating storage structures: 16 entries in 256 bytes space.
395s Storage structures created in: 0.000 seconds
395s 
395s Hashing NZ_GG705103.fna forwards
395s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 90%........
395s Hashing NZ_GG705103.fna backwards
395s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 90%........
395s Hashing NZ_GG705103.gbk forwards
395s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 90%........
395s Hashing NZ_GG705103.gbk backwards
395s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 90%........
395s Initial hashing took: 0.005 seconds
395s Extracting anchors from hash-space.
395s  (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 93%.
395s Anchor extraction completed in: 0.002 seconds
395s Total anchors: 0
395s Anchor extraction + merge time: 0.002 seconds
395s Total processing time: 0.118 seconds
395s Writing anchors...
395s Total seeds used in anchors: 16
395s Hash performance:
395s  Keys used: 16 out of 16 possible (100.00%).
395s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
395s  Average pigeons per pigeon hole: 1
395s Writing 16 repeats...Output writing finished in: 0.001 seconds
395s Total time: 0.119 seconds
395s Murasaki finished!
395s PASSED MURASAKI
395s 
395s Testing Genepare on NZ_GG705103.fna
395s 18446744073709551445
395s PASSED GENEPARSE
395s 
395s Testing mbfa on NZ_GG705103.fna
395s PASSED mbfa
395s 
395s Test Murasaki on NZ_GG705104.fna
395s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
395s Verbosity level is: 0
395s Writing to: output/test
395s Pattern is: 101
395s Max usable hash bits: 27
395s Hit filter is: 0
395s Hash table type is: EcoHash
395s Hashing every: 1 base
395s Histogram detail is: 0
395s Hashing function is: 3
395s Collision profiling is: disabled
395s Repeats are: unmasked
395s Mergefilter is at: 100
395s Random seed: 1711203601 (automatic)
395s Bitscore output: on
395s Leave status records: no
395s Join neighbors is: off
395s Target memory is: 1.30 GB
395s Retain members is: true
395s Store repeatmap? yes
395s Reverse complement data is generated on the fly
395s Rifts allowed: 0
395s Fuzzy Extension: yes
395s Score by minimum pair: yes
395s Gapped anchors: no
395s Large sequence support is: enabled => seqpos is 8 bytes
395s Murasaki version 1.68.6 (LARGESEQ)
395s Loading NZ_GG705104.fna
395s Read 821bp (821 bytesp) in 0.000 seconds (3.3 MBp/s)
395s Done with forward strand (821bp). Preparing reverse complement...
395s  <-> Reversing metdata.
395s Done.
395s Seq NZ_GG705104.fna loaded. 821 bytes
395s Loading NZ_GG705104.gbk
395s Read 821bp (821 bytesp) in 0.000 seconds (4.4 MBp/s)
395s Done with forward strand (821bp). Preparing reverse complement...
395s  <-> Reversing metdata.
395s Done.
395s Seq NZ_GG705104.gbk loaded. 821 bytes
395s Sequence loading took: 0.000 seconds
395s Forward frequencies:  A:28.5018%  C:21.6809%  G:23.1425%  T:26.6748%
395s Global base frequencies:  A/T:55.1766%  C/G:44.8234%
395s Pat: 3 bases long with weight 2
395s    1 101 
395s Computing hash parameters...
395s Using 4 hashbits
395s  0%......... (T -0.099 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.076 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.084 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.067 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.052 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.038 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.025 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%........
395s Acceptable hash function found after 1000 cycles.
395s Best uses 2/2 bases and has 0 empties from 2 inputs.
395s Score: 0.96875 (cf. worst: -4.51562)
395s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
395s Total correlation penalty: 0
395s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
395s                                             10
395s                                             ==
395s w[ 0]>>29:                                 -.C
395s w[ 0]>>30:                                  A.-
395s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
395s Ecolist (optimistic): Expcted entries per list: 8
395s Ecolist (optimistic): Minimum chunks per list: 4
395s Would take minimum 256.000000 bytes to make perfect hash.
395s Hashing 3.21 KB of sequence requires: 
395s  ~ linear (in seq length) hashing cost of 5.21 KB
395s  ~ linear (in seq length) expected anchor cost of 76.97 KB
395s Initial hash table uses: 256 bytes (4 bits, 16 entries)
395s Expected memory usage (without anchors): 5.46 KB
395s Expected memory usage (with anchors): 82.42 KB
395s Hash parameters computed in 0.123 seconds
395s Creating storage structures: 16 entries in 256 bytes space.
395s Storage structures created in: 0.000 seconds
395s 
395s Hashing NZ_GG705104.fna forwards
395s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%.......
395s Hashing NZ_GG705104.fna backwards
395s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%.......
395s Hashing NZ_GG705104.gbk forwards
395s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%.......
395s Hashing NZ_GG705104.gbk backwards
395s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%.......
395s Initial hashing took: 0.003 seconds
395s Extracting anchors from hash-space.
395s  (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 93%.
395s Anchor extraction completed in: 0.002 seconds
395s Total anchors: 0
395s Anchor extraction + merge time: 0.002 seconds
395s Total processing time: 0.129 seconds
395s Writing anchors...
395s Total seeds used in anchors: 16
395s Hash performance:
395s  Keys used: 16 out of 16 possible (100.00%).
395s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
395s  Average pigeons per pigeon hole: 1
395s Writing 16 repeats...Output writing finished in: 0.001 seconds
395s Total time: 0.129 seconds
395s Murasaki finished!
395s PASSED MURASAKI
395s 
395s Testing Genepare on NZ_GG705104.fna
395s 18446744073709551438
395s PASSED GENEPARSE
395s 
395s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
395s Testing mbfa on NZ_GG705104.fna
395s PASSED mbfa
395s 
395s Test Murasaki on NZ_GG705105.fna
395s Verbosity level is: 0
395s Writing to: output/test
395s Pattern is: 101
395s Max usable hash bits: 27
395s Hit filter is: 0
395s Hash table type is: EcoHash
395s Hashing every: 1 base
395s Histogram detail is: 0
395s Hashing function is: 3
395s Collision profiling is: disabled
395s Repeats are: unmasked
395s Mergefilter is at: 100
395s Random seed: 1711203601 (automatic)
395s Bitscore output: on
395s Leave status records: no
395s Join neighbors is: off
395s Target memory is: 1.30 GB
395s Retain members is: true
395s Store repeatmap? yes
395s Reverse complement data is generated on the fly
395s Rifts allowed: 0
395s Fuzzy Extension: yes
395s Score by minimum pair: yes
395s Gapped anchors: no
395s Large sequence support is: enabled => seqpos is 8 bytes
395s Murasaki version 1.68.6 (LARGESEQ)
395s Loading NZ_GG705105.fna
395s Read 802bp (802 bytesp) in 0.000 seconds (3.1 MBp/s)
395s Done with forward strand (802bp). Preparing reverse complement...
395s  <-> Reversing metdata.
395s Done.
395s Seq NZ_GG705105.fna loaded. 802 bytes
395s Loading NZ_GG705105.gbk
395s Read 802bp (802 bytesp) in 0.000 seconds (4.3 MBp/s)
395s Done with forward strand (802bp). Preparing reverse complement...
395s  <-> Reversing metdata.
395s Done.
395s Seq NZ_GG705105.gbk loaded. 802 bytes
395s Sequence loading took: 0.000 seconds
395s Forward frequencies:  A:33.9152%  C:17.7057%  G:18.2045%  T:30.1746%
395s Global base frequencies:  A/T:64.0898%  C/G:35.9102%
395s Pat: 3 bases long with weight 2
395s    1 101 
395s Computing hash parameters...
395s Using 4 hashbits
395s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.098 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.082 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.070 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.057 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.047 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.036 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.024 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%........
395s Acceptable hash function found after 1000 cycles.
395s Best uses 2/2 bases and has 0 empties from 2 inputs.
395s Score: 0.96875 (cf. worst: -4.51562)
395s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
395s Total correlation penalty: 0
395s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
395s                                             10
395s                                             ==
395s w[ 0]>>29:                                 -.C
395s w[ 0]>>30:                                  A.-
395s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
395s Ecolist (optimistic): Expcted entries per list: 8
395s Ecolist (optimistic): Minimum chunks per list: 4
395s Would take minimum 256.000000 bytes to make perfect hash.
395s Hashing 3.13 KB of sequence requires: 
395s  ~ linear (in seq length) hashing cost of 5.09 KB
395s  ~ linear (in seq length) expected anchor cost of 75.19 KB
395s Initial hash table uses: 256 bytes (4 bits, 16 entries)
395s Expected memory usage (without anchors): 5.34 KB
395s Expected memory usage (with anchors): 80.53 KB
395s Hash parameters computed in 0.120 seconds
395s Creating storage structures: 16 entries in 256 bytes space.
395s Storage structures created in: 0.000 seconds
395s 
395s Hashing NZ_GG705105.fna forwards
395s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%.......
395s Hashing NZ_GG705105.fna backwards
395s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%.......
395s Hashing NZ_GG705105.gbk forwards
395s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%.......
395s Hashing NZ_GG705105.gbk backwards
395s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%.......
395s Initial hashing took: 0.003 seconds
395s Extracting anchors from hash-space.
395s  (T -0.003 seconds) ETA: Sat Mar 23 14:20:01 2024
395s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 93%.
395s Anchor extraction completed in: 0.001 seconds
395s Total anchors: 0
395s Anchor extraction + merge time: 0.001 seconds
395s Total processing time: 0.125 seconds
395s Writing anchors...
395s Total seeds used in anchors: 16
395s Hash performance:
395s  Keys used: 16 out of 16 possible (100.00%).
395s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
395s  Average pigeons per pigeon hole: 1
395s Writing 16 repeats...Output writing finished in: 0.001 seconds
395s Total time: 0.126 seconds
395s Murasaki finished!
395s PASSED MURASAKI
395s 
395s Testing Genepare on NZ_GG705105.fna
395s 18446744073709551419
395s PASSED GENEPARSE
395s 
395s Testing mbfa on NZ_GG705105.fna
395s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
395s PASSED mbfa
395s 
395s Test Murasaki on NZ_GG705106.fna
395s Verbosity level is: 0
395s Writing to: output/test
395s Pattern is: 101
395s Max usable hash bits: 27
395s Hit filter is: 0
395s Hash table type is: EcoHash
395s Hashing every: 1 base
395s Histogram detail is: 0
395s Hashing function is: 3
395s Collision profiling is: disabled
395s Repeats are: unmasked
395s Mergefilter is at: 100
395s Random seed: 1711203601 (automatic)
395s Bitscore output: on
395s Leave status records: no
395s Join neighbors is: off
395s Target memory is: 1.30 GB
395s Retain members is: true
395s Store repeatmap? yes
395s Reverse complement data is generated on the fly
395s Rifts allowed: 0
395s Fuzzy Extension: yes
395s Score by minimum pair: yes
395s Gapped anchors: no
395s Large sequence support is: enabled => seqpos is 8 bytes
395s Murasaki version 1.68.6 (LARGESEQ)
395s Loading NZ_GG705106.fna
395s Read 800bp (800 bytesp) in 0.000 seconds (3.1 MBp/s)
395s Done with forward strand (800bp). Preparing reverse complement...
395s  <-> Reversing metdata.
395s Done.
395s Seq NZ_GG705106.fna loaded. 800 bytes
395s Loading NZ_GG705106.gbk
395s Read 800bp (800 bytesp) in 0.000 seconds (3.6 MBp/s)
395s Done with forward strand (800bp). Preparing reverse complement...
395s  <-> Reversing metdata.
395s Done.
395s Seq NZ_GG705106.gbk loaded. 800 bytes
395s Sequence loading took: 0.000 seconds
395s Forward frequencies:  A:28.875%  C:18%  G:21.625%  T:31.5%
395s Global base frequencies:  A/T:60.375%  C/G:39.625%
395s Pat: 3 bases long with weight 2
395s    1 101 
395s Computing hash parameters...
395s Using 4 hashbits
395s  0%......... (T -0.136 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.112 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.093 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.079 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.064 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.050 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.037 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.024 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%........
395s Acceptable hash function found after 1000 cycles.
395s Best uses 2/2 bases and has 0 empties from 2 inputs.
395s Score: 0.96875 (cf. worst: -4.51562)
395s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
395s Total correlation penalty: 0
395s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
395s                                             10
395s                                             ==
395s w[ 0]>>29:                                 -.C
395s w[ 0]>>30:                                  A.-
395s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
395s Ecolist (optimistic): Expcted entries per list: 8
395s Ecolist (optimistic): Minimum chunks per list: 4
395s Would take minimum 256.000000 bytes to make perfect hash.
395s Hashing 3.12 KB of sequence requires: 
395s  ~ linear (in seq length) hashing cost of 5.08 KB
395s  ~ linear (in seq length) expected anchor cost of 75.00 KB
395s Initial hash table uses: 256 bytes (4 bits, 16 entries)
395s Expected memory usage (without anchors): 5.33 KB
395s Expected memory usage (with anchors): 80.33 KB
395s Hash parameters computed in 0.125 seconds
395s Creating storage structures: 16 entries in 256 bytes space.
395s Storage structures created in: 0.000 seconds
395s 
395s Hashing NZ_GG705106.fna forwards
395s  0%......... (T -0.004 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 90%.........
395s Hashing NZ_GG705106.fna backwards
395s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 90%.........
395s Hashing NZ_GG705106.gbk forwards
395s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 90%.........
395s Hashing NZ_GG705106.gbk backwards
395s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 90%.........
395s Initial hashing took: 0.005 seconds
395s Extracting anchors from hash-space.
395s  (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 93%.
395s Anchor extraction completed in: 0.001 seconds
395s Total anchors: 0
395s Anchor extraction + merge time: 0.001 seconds
395s Total processing time: 0.132 seconds
395s Writing anchors...
395s Total seeds used in anchors: 16
395s Hash performance:
395s  Keys used: 16 out of 16 possible (100.00%).
395s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
395s  Average pigeons per pigeon hole: 1
395s Writing 16 repeats...Output writing finished in: 0.001 seconds
395s Total time: 0.133 seconds
395s Murasaki finished!
395s PASSED MURASAKI
395s 
395s Testing Genepare on NZ_GG705106.fna
395s 18446744073709551417
395s PASSED GENEPARSE
395s 
395s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
395s Testing mbfa on NZ_GG705106.fna
395s PASSED mbfa
395s 
395s Test Murasaki on NZ_GG705107.fna
395s Verbosity level is: 0
395s Writing to: output/test
395s Pattern is: 101
395s Max usable hash bits: 27
395s Hit filter is: 0
395s Hash table type is: EcoHash
395s Hashing every: 1 base
395s Histogram detail is: 0
395s Hashing function is: 3
395s Collision profiling is: disabled
395s Repeats are: unmasked
395s Mergefilter is at: 100
395s Random seed: 1711203601 (automatic)
395s Bitscore output: on
395s Leave status records: no
395s Join neighbors is: off
395s Target memory is: 1.30 GB
395s Retain members is: true
395s Store repeatmap? yes
395s Reverse complement data is generated on the fly
395s Rifts allowed: 0
395s Fuzzy Extension: yes
395s Score by minimum pair: yes
395s Gapped anchors: no
395s Large sequence support is: enabled => seqpos is 8 bytes
395s Murasaki version 1.68.6 (LARGESEQ)
395s Loading NZ_GG705107.fna
395s Read 793bp (793 bytesp) in 0.000 seconds (2.3 MBp/s)
395s Done with forward strand (793bp). Preparing reverse complement...
395s  <-> Reversing metdata.
395s Done.
395s Seq NZ_GG705107.fna loaded. 793 bytes
395s Loading NZ_GG705107.gbk
395s Read 793bp (793 bytesp) in 0.000 seconds (3.7 MBp/s)
395s Done with forward strand (793bp). Preparing reverse complement...
395s  <-> Reversing metdata.
395s Done.
395s Seq NZ_GG705107.gbk loaded. 793 bytes
395s Sequence loading took: 0.001 seconds
395s Forward frequencies:  A:29.5082%  C:14.3758%  G:19.4199%  T:36.6961%
395s Global base frequencies:  A/T:66.2043%  C/G:33.7957%
395s Pat: 3 bases long with weight 2
395s    1 101 
395s Computing hash parameters...
395s Using 4 hashbits
395s  0%......... (T -0.098 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.089 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.083 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.071 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.058 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%........
395s Acceptable hash function found after 1000 cycles.
395s Best uses 2/2 bases and has 0 empties from 2 inputs.
395s Score: 0.96875 (cf. worst: -4.51562)
395s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
395s Total correlation penalty: 0
395s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
395s                                             10
395s                                             ==
395s w[ 0]>>29:                                 -.C
395s w[ 0]>>30:                                  A.-
395s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
395s Ecolist (optimistic): Expcted entries per list: 8
395s Ecolist (optimistic): Minimum chunks per list: 4
395s Would take minimum 256.000000 bytes to make perfect hash.
395s Hashing 3.10 KB of sequence requires: 
395s  ~ linear (in seq length) hashing cost of 5.03 KB
395s  ~ linear (in seq length) expected anchor cost of 74.34 KB
395s Initial hash table uses: 256 bytes (4 bits, 16 entries)
395s Expected memory usage (without anchors): 5.28 KB
395s Expected memory usage (with anchors): 79.62 KB
395s Hash parameters computed in 0.112 seconds
395s Creating storage structures: 16 entries in 256 bytes space.
395s Storage structures created in: 0.000 seconds
395s 
395s Hashing NZ_GG705107.fna forwards
395s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%........
395s Hashing NZ_GG705107.fna backwards
395s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%........
395s Hashing NZ_GG705107.gbk forwards
395s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%........
395s Hashing NZ_GG705107.gbk backwards
395s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 91%........
395s Initial hashing took: 0.005 seconds
395s Extracting anchors from hash-space.
395s  (T -0.003 seconds) ETA: Sat Mar 23 14:20:01 2024
395s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:01 2024
395s 93%.
395s Anchor extraction completed in: 0.001 seconds
395s Total anchors: 0
395s Anchor extraction + merge time: 0.001 seconds
395s Total processing time: 0.120 seconds
395s Writing anchors...
395s Total seeds used in anchors: 16
395s Hash performance:
395s  Keys used: 16 out of 16 possible (100.00%).
395s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
395s  Average pigeons per pigeon hole: 1
395s Writing 16 repeats...Output writing finished in: 0.001 seconds
395s Total time: 0.120 seconds
395s Murasaki finished!
395s PASSED MURASAKI
395s 
395s Testing Genepare on NZ_GG705107.fna
395s 18446744073709551410
395s PASSED GENEPARSE
395s 
396s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
396s Testing mbfa on NZ_GG705107.fna
396s PASSED mbfa
396s 
396s Test Murasaki on NZ_GG705108.fna
396s Verbosity level is: 0
396s Writing to: output/test
396s Pattern is: 101
396s Max usable hash bits: 27
396s Hit filter is: 0
396s Hash table type is: EcoHash
396s Hashing every: 1 base
396s Histogram detail is: 0
396s Hashing function is: 3
396s Collision profiling is: disabled
396s Repeats are: unmasked
396s Mergefilter is at: 100
396s Random seed: 1711203601 (automatic)
396s Bitscore output: on
396s Leave status records: no
396s Join neighbors is: off
396s Target memory is: 1.30 GB
396s Retain members is: true
396s Store repeatmap? yes
396s Reverse complement data is generated on the fly
396s Rifts allowed: 0
396s Fuzzy Extension: yes
396s Score by minimum pair: yes
396s Gapped anchors: no
396s Large sequence support is: enabled => seqpos is 8 bytes
396s Murasaki version 1.68.6 (LARGESEQ)
396s Loading NZ_GG705108.fna
396s Read 792bp (792 bytesp) in 0.000 seconds (3.1 MBp/s)
396s Done with forward strand (792bp). Preparing reverse complement...
396s  <-> Reversing metdata.
396s Done.
396s Seq NZ_GG705108.fna loaded. 792 bytes
396s Loading NZ_GG705108.gbk
396s Read 792bp (792 bytesp) in 0.000 seconds (4.3 MBp/s)
396s Done with forward strand (792bp). Preparing reverse complement...
396s  <-> Reversing metdata.
396s Done.
396s Seq NZ_GG705108.gbk loaded. 792 bytes
396s Sequence loading took: 0.000 seconds
396s Forward frequencies:  A:34.9747%  C:15.6566%  G:20.8333%  T:28.5354%
396s Global base frequencies:  A/T:63.5101%  C/G:36.4899%
396s Pat: 3 bases long with weight 2
396s    1 101 
396s Computing hash parameters...
396s Using 4 hashbits
396s  0%......... (T -0.099 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.089 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.078 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.068 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.056 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.047 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 91%........
396s Acceptable hash function found after 1000 cycles.
396s Best uses 2/2 bases and has 0 empties from 2 inputs.
396s Score: 0.96875 (cf. worst: -4.51562)
396s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
396s Total correlation penalty: 0
396s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
396s                                             10
396s                                             ==
396s w[ 0]>>29:                                 -.C
396s w[ 0]>>30:                                  A.-
396s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
396s Ecolist (optimistic): Expcted entries per list: 8
396s Ecolist (optimistic): Minimum chunks per list: 4
396s Would take minimum 256.000000 bytes to make perfect hash.
396s Hashing 3.09 KB of sequence requires: 
396s  ~ linear (in seq length) hashing cost of 5.03 KB
396s  ~ linear (in seq length) expected anchor cost of 74.25 KB
396s Initial hash table uses: 256 bytes (4 bits, 16 entries)
396s Expected memory usage (without anchors): 5.28 KB
396s Expected memory usage (with anchors): 79.53 KB
396s Hash parameters computed in 0.115 seconds
396s Creating storage structures: 16 entries in 256 bytes space.
396s Storage structures created in: 0.000 seconds
396s 
396s Hashing NZ_GG705108.fna forwards
396s  0%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 81%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 91%........
396s Hashing NZ_GG705108.fna backwards
396s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 81%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 91%........
396s Hashing NZ_GG705108.gbk forwards
396s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 81%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 91%........
396s Hashing NZ_GG705108.gbk backwards
396s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 81%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 91%........
396s Initial hashing took: 0.001 seconds
396s Extracting anchors from hash-space.
396s  (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 93%.
396s Anchor extraction completed in: 0.001 seconds
396s Total anchors: 0
396s Anchor extraction + merge time: 0.001 seconds
396s Total processing time: 0.119 seconds
396s Writing anchors...
396s Total seeds used in anchors: 16
396s Hash performance:
396s  Keys used: 16 out of 16 possible (100.00%).
396s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
396s  Average pigeons per pigeon hole: 1
396s Writing 16 repeats...Output writing finished in: 0.001 seconds
396s Total time: 0.120 seconds
396s Murasaki finished!
396s PASSED MURASAKI
396s 
396s Testing Genepare on NZ_GG705108.fna
396s 18446744073709551409
396s PASSED GENEPARSE
396s 
396s Testing mbfa on NZ_GG705108.fna
396s PASSED mbfa
396s 
396s Test Murasaki on NZ_GG705109.fna
396s Verbosity level is: 0
396s Writing to: output/test
396s Pattern is: 101
396s Max usable hash bits: 27
396s Hit filter is: 0
396s Hash table type is: EcoHash
396s Hashing every: 1 base
396s Histogram detail is: 0
396s Hashing function is: 3
396s Collision profiling is: disabled
396s Repeats are: unmasked
396s Mergefilter is at: 100
396s Random seed: 1711203602 (automatic)
396s Bitscore output: on
396s Leave status records: no
396s Join neighbors is: off
396s Target memory is: 1.30 GB
396s Retain members is: true
396s Store repeatmap? yes
396s Reverse complement data is generated on the fly
396s Rifts allowed: 0
396s Fuzzy Extension: yes
396s Score by minimum pair: yes
396s Gapped anchors: no
396s Large sequence support is: enabled => seqpos is 8 bytes
396s Murasaki version 1.68.6 (LARGESEQ)
396s Loading NZ_GG705109.fna
396s Read 790bp (790 bytesp) in 0.000 seconds (2.8 MBp/s)
396s Done with forward strand (790bp). Preparing reverse complement...
396s  <-> Reversing metdata.
396s Done.
396s Seq NZ_GG705109.fna loaded. 790 bytes
396s Loading NZ_GG705109.gbk
396s Read 790bp (790 bytesp) in 0.000 seconds (3.5 MBp/s)
396s Done with forward strand (790bp). Preparing reverse complement...
396s  <-> Reversing metdata.
396s Done.
396s Seq NZ_GG705109.gbk loaded. 790 bytes
396s Sequence loading took: 0.001 seconds
396s Forward frequencies:  A:27.5949%  C:25.0633%  G:23.038%  T:24.3038%
396s Global base frequencies:  A/T:51.8987%  C/G:48.1013%
396s Pat: 3 bases long with weight 2
396s    1 101 
396s Computing hash parameters...
396s Using 4 hashbits
396s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
396s  0%......... (T -0.104 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.090 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.079 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.060 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.048 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.036 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.024 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 91%........
396s Acceptable hash function found after 1000 cycles.
396s Best uses 2/2 bases and has 0 empties from 2 inputs.
396s Score: 0.96875 (cf. worst: -4.51562)
396s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
396s Total correlation penalty: 0
396s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
396s                                             10
396s                                             ==
396s w[ 0]>>29:                                 -.C
396s w[ 0]>>30:                                  A.-
396s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
396s Ecolist (optimistic): Expcted entries per list: 8
396s Ecolist (optimistic): Minimum chunks per list: 4
396s Would take minimum 256.000000 bytes to make perfect hash.
396s Hashing 3.09 KB of sequence requires: 
396s  ~ linear (in seq length) hashing cost of 5.01 KB
396s  ~ linear (in seq length) expected anchor cost of 74.06 KB
396s Initial hash table uses: 256 bytes (4 bits, 16 entries)
396s Expected memory usage (without anchors): 5.26 KB
396s Expected memory usage (with anchors): 79.33 KB
396s Hash parameters computed in 0.117 seconds
396s Creating storage structures: 16 entries in 256 bytes space.
396s Storage structures created in: 0.000 seconds
396s 
396s Hashing NZ_GG705109.fna forwards
396s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Hashing NZ_GG705109.fna backwards
396s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Hashing NZ_GG705109.gbk forwards
396s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Hashing NZ_GG705109.gbk backwards
396s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Initial hashing took: 0.005 seconds
396s Extracting anchors from hash-space.
396s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 93%.
396s Anchor extraction completed in: 0.001 seconds
396s Total anchors: 0
396s Anchor extraction + merge time: 0.001 seconds
396s Total processing time: 0.124 seconds
396s Writing anchors...
396s Total seeds used in anchors: 16
396s Hash performance:
396s  Keys used: 16 out of 16 possible (100.00%).
396s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
396s  Average pigeons per pigeon hole: 1
396s Writing 16 repeats...Output writing finished in: 0.001 seconds
396s Total time: 0.125 seconds
396s Murasaki finished!
396s PASSED MURASAKI
396s 
396s Testing Genepare on NZ_GG705109.fna
396s 18446744073709551407
396s PASSED GENEPARSE
396s 
396s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
396s Testing mbfa on NZ_GG705109.fna
396s PASSED mbfa
396s 
396s Test Murasaki on NZ_GG705110.fna
396s Verbosity level is: 0
396s Writing to: output/test
396s Pattern is: 101
396s Max usable hash bits: 27
396s Hit filter is: 0
396s Hash table type is: EcoHash
396s Hashing every: 1 base
396s Histogram detail is: 0
396s Hashing function is: 3
396s Collision profiling is: disabled
396s Repeats are: unmasked
396s Mergefilter is at: 100
396s Random seed: 1711203602 (automatic)
396s Bitscore output: on
396s Leave status records: no
396s Join neighbors is: off
396s Target memory is: 1.30 GB
396s Retain members is: true
396s Store repeatmap? yes
396s Reverse complement data is generated on the fly
396s Rifts allowed: 0
396s Fuzzy Extension: yes
396s Score by minimum pair: yes
396s Gapped anchors: no
396s Large sequence support is: enabled => seqpos is 8 bytes
396s Murasaki version 1.68.6 (LARGESEQ)
396s Loading NZ_GG705110.fna
396s Read 789bp (789 bytesp) in 0.000 seconds (2.7 MBp/s)
396s Done with forward strand (789bp). Preparing reverse complement...
396s  <-> Reversing metdata.
396s Done.
396s Seq NZ_GG705110.fna loaded. 789 bytes
396s Loading NZ_GG705110.gbk
396s Read 789bp (789 bytesp) in 0.000 seconds (3.5 MBp/s)
396s Done with forward strand (789bp). Preparing reverse complement...
396s  <-> Reversing metdata.
396s Done.
396s Seq NZ_GG705110.gbk loaded. 789 bytes
396s Sequence loading took: 0.001 seconds
396s Forward frequencies:  A:28.6439%  C:19.5184%  G:16.0963%  T:35.7414%
396s Global base frequencies:  A/T:64.3853%  C/G:35.6147%
396s Pat: 3 bases long with weight 2
396s    1 101 
396s Computing hash parameters...
396s Using 4 hashbits
396s  0%......... (T -0.110 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.096 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.084 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.075 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.063 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.050 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.037 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.025 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 91%........
396s Acceptable hash function found after 1000 cycles.
396s Best uses 2/2 bases and has 0 empties from 2 inputs.
396s Score: 0.96875 (cf. worst: -4.51562)
396s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
396s Total correlation penalty: 0
396s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
396s                                             10
396s                                             ==
396s w[ 0]>>29:                                 -.C
396s w[ 0]>>30:                                  A.-
396s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
396s Ecolist (optimistic): Expcted entries per list: 8
396s Ecolist (optimistic): Minimum chunks per list: 4
396s Would take minimum 256.000000 bytes to make perfect hash.
396s Hashing 3.08 KB of sequence requires: 
396s  ~ linear (in seq length) hashing cost of 5.00 KB
396s  ~ linear (in seq length) expected anchor cost of 73.97 KB
396s Initial hash table uses: 256 bytes (4 bits, 16 entries)
396s Expected memory usage (without anchors): 5.25 KB
396s Expected memory usage (with anchors): 79.22 KB
396s Hash parameters computed in 0.120 seconds
396s Creating storage structures: 16 entries in 256 bytes space.
396s Storage structures created in: 0.000 seconds
396s 
396s Hashing NZ_GG705110.fna forwards
396s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Hashing NZ_GG705110.fna backwards
396s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Hashing NZ_GG705110.gbk forwards
396s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Hashing NZ_GG705110.gbk backwards
396s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Initial hashing took: 0.008 seconds
396s Extracting anchors from hash-space.
396s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 93%.
396s Anchor extraction completed in: 0.001 seconds
396s Total anchors: 0
396s Anchor extraction + merge time: 0.001 seconds
396s Total processing time: 0.130 seconds
396s Writing anchors...
396s Total seeds used in anchors: 16
396s Hash performance:
396s  Keys used: 16 out of 16 possible (100.00%).
396s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
396s  Average pigeons per pigeon hole: 1
396s Writing 16 repeats...Output writing finished in: 0.001 seconds
396s Total time: 0.130 seconds
396s Murasaki finished!
396s PASSED MURASAKI
396s 
396s Testing Genepare on NZ_GG705110.fna
396s 18446744073709551406
396s PASSED GENEPARSE
396s 
396s Testing mbfa on NZ_GG705110.fna
396s PASSED mbfa
396s 
396s Test Murasaki on NZ_GG705111.fna
396s Verbosity level is: 0
396s Writing to: output/test
396s Pattern is: 101
396s Max usable hash bits: 27
396s Hit filter is: 0
396s Hash table type is: EcoHash
396s Hashing every: 1 base
396s Histogram detail is: 0
396s Hashing function is: 3
396s Collision profiling is: disabled
396s Repeats are: unmasked
396s Mergefilter is at: 100
396s Random seed: 1711203602 (automatic)
396s Bitscore output: on
396s Leave status records: no
396s Join neighbors is: off
396s Target memory is: 1.30 GB
396s Retain members is: true
396s Store repeatmap? yes
396s Reverse complement data is generated on the fly
396s Rifts allowed: 0
396s Fuzzy Extension: yes
396s Score by minimum pair: yes
396s Gapped anchors: no
396s Large sequence support is: enabled => seqpos is 8 bytes
396s Murasaki version 1.68.6 (LARGESEQ)
396s Loading NZ_GG705111.fna
396s Read 788bp (788 bytesp) in 0.000 seconds (2.6 MBp/s)
396s Done with forward strand (788bp). Preparing reverse complement...
396s  <-> Reversing metdata.
396s Done.
396s Seq NZ_GG705111.fna loaded. 788 bytes
396s Loading NZ_GG705111.gbk
396s Read 788bp (788 bytesp) in 0.000 seconds (3.6 MBp/s)
396s Done with forward strand (788bp). Preparing reverse complement...
396s  <-> Reversing metdata.
396s Done.
396s Seq NZ_GG705111.gbk loaded. 788 bytes
396s Sequence loading took: 0.001 seconds
396s Forward frequencies:  A:35.1523%  C:15.3553%  G:20.0508%  T:29.4416%
396s Global base frequencies:  A/T:64.5939%  C/G:35.4061%
396s Pat: 3 bases long with weight 2
396s    1 101 
396s Computing hash parameters...
396s Using 4 hashbits
396s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
396s  0%......... (T -0.101 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.089 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.045 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.024 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.012 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 91%........
396s Acceptable hash function found after 1000 cycles.
396s Best uses 2/2 bases and has 0 empties from 2 inputs.
396s Score: 0.96875 (cf. worst: -4.51562)
396s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
396s Total correlation penalty: 0
396s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
396s                                             10
396s                                             ==
396s w[ 0]>>29:                                 -.C
396s w[ 0]>>30:                                  A.-
396s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
396s Ecolist (optimistic): Expcted entries per list: 8
396s Ecolist (optimistic): Minimum chunks per list: 4
396s Would take minimum 256.000000 bytes to make perfect hash.
396s Hashing 3.08 KB of sequence requires: 
396s  ~ linear (in seq length) hashing cost of 5.00 KB
396s  ~ linear (in seq length) expected anchor cost of 73.88 KB
396s Initial hash table uses: 256 bytes (4 bits, 16 entries)
396s Expected memory usage (without anchors): 5.25 KB
396s Expected memory usage (with anchors): 79.13 KB
396s Hash parameters computed in 0.136 seconds
396s Creating storage structures: 16 entries in 256 bytes space.
396s Storage structures created in: 0.000 seconds
396s 
396s Hashing NZ_GG705111.fna forwards
396s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Hashing NZ_GG705111.fna backwards
396s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Hashing NZ_GG705111.gbk forwards
396s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Hashing NZ_GG705111.gbk backwards
396s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Initial hashing took: 0.003 seconds
396s Extracting anchors from hash-space.
396s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 93%.
396s Anchor extraction completed in: 0.002 seconds
396s Total anchors: 0
396s Anchor extraction + merge time: 0.002 seconds
396s Total processing time: 0.143 seconds
396s Writing anchors...
396s Total seeds used in anchors: 16
396s Hash performance:
396s  Keys used: 16 out of 16 possible (100.00%).
396s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
396s  Average pigeons per pigeon hole: 1
396s Writing 16 repeats...Output writing finished in: 0.001 seconds
396s Total time: 0.144 seconds
396s Murasaki finished!
396s PASSED MURASAKI
396s 
396s Testing Genepare on NZ_GG705111.fna
396s 18446744073709551405
396s PASSED GENEPARSE
396s 
396s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
396s Testing mbfa on NZ_GG705111.fna
396s PASSED mbfa
396s 
396s Test Murasaki on NZ_GG705112.fna
396s Verbosity level is: 0
396s Writing to: output/test
396s Pattern is: 101
396s Max usable hash bits: 27
396s Hit filter is: 0
396s Hash table type is: EcoHash
396s Hashing every: 1 base
396s Histogram detail is: 0
396s Hashing function is: 3
396s Collision profiling is: disabled
396s Repeats are: unmasked
396s Mergefilter is at: 100
396s Random seed: 1711203602 (automatic)
396s Bitscore output: on
396s Leave status records: no
396s Join neighbors is: off
396s Target memory is: 1.30 GB
396s Retain members is: true
396s Store repeatmap? yes
396s Reverse complement data is generated on the fly
396s Rifts allowed: 0
396s Fuzzy Extension: yes
396s Score by minimum pair: yes
396s Gapped anchors: no
396s Large sequence support is: enabled => seqpos is 8 bytes
396s Murasaki version 1.68.6 (LARGESEQ)
396s Loading NZ_GG705112.fna
396s Read 787bp (787 bytesp) in 0.001 seconds (1.4 MBp/s)
396s Done with forward strand (787bp). Preparing reverse complement...
396s  <-> Reversing metdata.
396s Done.
396s Seq NZ_GG705112.fna loaded. 787 bytes
396s Loading NZ_GG705112.gbk
396s Read 787bp (787 bytesp) in 0.000 seconds (2.2 MBp/s)
396s Done with forward strand (787bp). Preparing reverse complement...
396s  <-> Reversing metdata.
396s Done.
396s Seq NZ_GG705112.gbk loaded. 787 bytes
396s Sequence loading took: 0.001 seconds
396s Forward frequencies:  A:29.352%  C:21.601%  G:15.5019%  T:33.5451%
396s Global base frequencies:  A/T:62.8971%  C/G:37.1029%
396s Pat: 3 bases long with weight 2
396s    1 101 
396s Computing hash parameters...
396s Using 4 hashbits
396s  0%......... (T -0.101 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.089 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.081 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.068 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.057 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.045 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 91%........
396s Acceptable hash function found after 1000 cycles.
396s Best uses 2/2 bases and has 0 empties from 2 inputs.
396s Score: 0.96875 (cf. worst: -4.51562)
396s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
396s Total correlation penalty: 0
396s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
396s                                             10
396s                                             ==
396s w[ 0]>>29:                                 -.C
396s w[ 0]>>30:                                  A.-
396s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
396s Ecolist (optimistic): Expcted entries per list: 8
396s Ecolist (optimistic): Minimum chunks per list: 4
396s Would take minimum 256.000000 bytes to make perfect hash.
396s Hashing 3.07 KB of sequence requires: 
396s  ~ linear (in seq length) hashing cost of 4.99 KB
396s  ~ linear (in seq length) expected anchor cost of 73.78 KB
396s Initial hash table uses: 256 bytes (4 bits, 16 entries)
396s Expected memory usage (without anchors): 5.24 KB
396s Expected memory usage (with anchors): 79.02 KB
396s Hash parameters computed in 0.117 seconds
396s Creating storage structures: 16 entries in 256 bytes space.
396s Storage structures created in: 0.000 seconds
396s 
396s Hashing NZ_GG705112.fna forwards
396s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Hashing NZ_GG705112.fna backwards
396s  0%......... (T -0.004 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Hashing NZ_GG705112.gbk forwards
396s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Hashing NZ_GG705112.gbk backwards
396s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%.........
396s Initial hashing took: 0.010 seconds
396s Extracting anchors from hash-space.
396s  (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 93%.
396s Anchor extraction completed in: 0.001 seconds
396s Total anchors: 0
396s Anchor extraction + merge time: 0.002 seconds
396s Total processing time: 0.130 seconds
396s Writing anchors...
396s Total seeds used in anchors: 16
396s Hash performance:
396s  Keys used: 16 out of 16 possible (100.00%).
396s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
396s  Average pigeons per pigeon hole: 1
396s Writing 16 repeats...Output writing finished in: 0.001 seconds
396s Total time: 0.131 seconds
396s Murasaki finished!
396s PASSED MURASAKI
396s 
396s Testing Genepare on NZ_GG705112.fna
396s 18446744073709551404
396s PASSED GENEPARSE
396s 
396s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
396s Testing mbfa on NZ_GG705112.fna
396s PASSED mbfa
396s 
396s Test Murasaki on NZ_GG705113.fna
396s Verbosity level is: 0
396s Writing to: output/test
396s Pattern is: 101
396s Max usable hash bits: 27
396s Hit filter is: 0
396s Hash table type is: EcoHash
396s Hashing every: 1 base
396s Histogram detail is: 0
396s Hashing function is: 3
396s Collision profiling is: disabled
396s Repeats are: unmasked
396s Mergefilter is at: 100
396s Random seed: 1711203602 (automatic)
396s Bitscore output: on
396s Leave status records: no
396s Join neighbors is: off
396s Target memory is: 1.30 GB
396s Retain members is: true
396s Store repeatmap? yes
396s Reverse complement data is generated on the fly
396s Rifts allowed: 0
396s Fuzzy Extension: yes
396s Score by minimum pair: yes
396s Gapped anchors: no
396s Large sequence support is: enabled => seqpos is 8 bytes
396s Murasaki version 1.68.6 (LARGESEQ)
396s Loading NZ_GG705113.fna
396s Read 776bp (776 bytesp) in 0.000 seconds (2.7 MBp/s)
396s Done with forward strand (776bp). Preparing reverse complement...
396s  <-> Reversing metdata.
396s Done.
396s Seq NZ_GG705113.fna loaded. 776 bytes
396s Loading NZ_GG705113.gbk
396s Read 776bp (776 bytesp) in 0.000 seconds (3.3 MBp/s)
396s Done with forward strand (776bp). Preparing reverse complement...
396s  <-> Reversing metdata.
396s Done.
396s Seq NZ_GG705113.gbk loaded. 776 bytes
396s Sequence loading took: 0.001 seconds
396s Forward frequencies:  A:27.3196%  C:23.7113%  G:22.6804%  T:26.2887%
396s Global base frequencies:  A/T:53.6082%  C/G:46.3918%
396s Pat: 3 bases long with weight 2
396s    1 101 
396s Computing hash parameters...
396s Using 4 hashbits
396s  0%......... (T -0.104 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.095 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.082 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.069 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.057 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.049 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.037 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.024 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 91%........
396s Acceptable hash function found after 1000 cycles.
396s Best uses 2/2 bases and has 0 empties from 2 inputs.
396s Score: 0.96875 (cf. worst: -4.51562)
396s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
396s Total correlation penalty: 0
396s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
396s                                             10
396s                                             ==
396s w[ 0]>>29:                                 -.C
396s w[ 0]>>30:                                  A.-
396s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
396s Ecolist (optimistic): Expcted entries per list: 8
396s Ecolist (optimistic): Minimum chunks per list: 4
396s Would take minimum 256.000000 bytes to make perfect hash.
396s Hashing 3.03 KB of sequence requires: 
396s  ~ linear (in seq length) hashing cost of 4.93 KB
396s  ~ linear (in seq length) expected anchor cost of 72.75 KB
396s Initial hash table uses: 256 bytes (4 bits, 16 entries)
396s Expected memory usage (without anchors): 5.18 KB
396s Expected memory usage (with anchors): 77.93 KB
396s Hash parameters computed in 0.121 seconds
396s Creating storage structures: 16 entries in 256 bytes space.
396s Storage structures created in: 0.000 seconds
396s 
396s Hashing NZ_GG705113.fna forwards
396s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%........
396s Hashing NZ_GG705113.fna backwards
396s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%........
396s Hashing NZ_GG705113.gbk forwards
396s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%........
396s Hashing NZ_GG705113.gbk backwards
396s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 90%........
396s Initial hashing took: 0.007 seconds
396s Extracting anchors from hash-space.
396s  (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 56%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:02 2024
396s 93%.
396s Anchor extraction completed in: 0.002 seconds
396s Total anchors: 0
396s Anchor extraction + merge time: 0.002 seconds
396s Total processing time: 0.131 seconds
396s Writing anchors...
396s Total seeds used in anchors: 16
396s Hash performance:
396s  Keys used: 16 out of 16 possible (100.00%).
396s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
396s  Average pigeons per pigeon hole: 1
396s Writing 16 repeats...Output writing finished in: 0.001 seconds
396s Total time: 0.132 seconds
396s Murasaki finished!
396s PASSED MURASAKI
396s 
396s Testing Genepare on NZ_GG705113.fna
396s 18446744073709551393
396s PASSED GENEPARSE
396s 
397s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
397s Testing mbfa on NZ_GG705113.fna
397s PASSED mbfa
397s 
397s Test Murasaki on NZ_GG705114.fna
397s Verbosity level is: 0
397s Writing to: output/test
397s Pattern is: 101
397s Max usable hash bits: 27
397s Hit filter is: 0
397s Hash table type is: EcoHash
397s Hashing every: 1 base
397s Histogram detail is: 0
397s Hashing function is: 3
397s Collision profiling is: disabled
397s Repeats are: unmasked
397s Mergefilter is at: 100
397s Random seed: 1711203602 (automatic)
397s Bitscore output: on
397s Leave status records: no
397s Join neighbors is: off
397s Target memory is: 1.30 GB
397s Retain members is: true
397s Store repeatmap? yes
397s Reverse complement data is generated on the fly
397s Rifts allowed: 0
397s Fuzzy Extension: yes
397s Score by minimum pair: yes
397s Gapped anchors: no
397s Large sequence support is: enabled => seqpos is 8 bytes
397s Murasaki version 1.68.6 (LARGESEQ)
397s Loading NZ_GG705114.fna
397s Read 713bp (713 bytesp) in 0.000 seconds (2.8 MBp/s)
397s Done with forward strand (713bp). Preparing reverse complement...
397s  <-> Reversing metdata.
397s Done.
397s Seq NZ_GG705114.fna loaded. 713 bytes
397s Loading NZ_GG705114.gbk
397s Read 713bp (713 bytesp) in 0.000 seconds (4.1 MBp/s)
397s Done with forward strand (713bp). Preparing reverse complement...
397s  <-> Reversing metdata.
397s Done.
397s Seq NZ_GG705114.gbk loaded. 713 bytes
397s Sequence loading took: 0.000 seconds
397s Forward frequencies:  A:27.3492%  C:13.0435%  G:17.2511%  T:42.3562%
397s Global base frequencies:  A/T:69.7055%  C/G:30.2945%
397s Pat: 3 bases long with weight 2
397s    1 101 
397s Computing hash parameters...
397s Using 4 hashbits
397s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.080 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.069 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.057 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 91%........
397s Acceptable hash function found after 1000 cycles.
397s Best uses 2/2 bases and has 0 empties from 2 inputs.
397s Score: 0.96875 (cf. worst: -4.51562)
397s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
397s Total correlation penalty: 0
397s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
397s                                             10
397s                                             ==
397s w[ 0]>>29:                                 -.C
397s w[ 0]>>30:                                  A.-
397s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
397s Ecolist (optimistic): Expcted entries per list: 8
397s Ecolist (optimistic): Minimum chunks per list: 4
397s Would take minimum 256.000000 bytes to make perfect hash.
397s Hashing 2.79 KB of sequence requires: 
397s  ~ linear (in seq length) hashing cost of 4.52 KB
397s  ~ linear (in seq length) expected anchor cost of 66.84 KB
397s Initial hash table uses: 256 bytes (4 bits, 16 entries)
397s Expected memory usage (without anchors): 4.77 KB
397s Expected memory usage (with anchors): 71.61 KB
397s Hash parameters computed in 0.113 seconds
397s Creating storage structures: 16 entries in 256 bytes space.
397s Storage structures created in: 0.000 seconds
397s 
397s Hashing NZ_GG705114.fna forwards
397s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 91%.......
397s Hashing NZ_GG705114.fna backwards
397s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 91%.......
397s Hashing NZ_GG705114.gbk forwards
397s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 91%.......
397s Hashing NZ_GG705114.gbk backwards
397s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 91%.......
397s Initial hashing took: 0.009 seconds
397s Extracting anchors from hash-space.
397s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 93%.
397s Anchor extraction completed in: 0.001 seconds
397s Total anchors: 0
397s Anchor extraction + merge time: 0.001 seconds
397s Total processing time: 0.124 seconds
397s Writing anchors...
397s Total seeds used in anchors: 16
397s Hash performance:
397s  Keys used: 16 out of 16 possible (100.00%).
397s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
397s  Average pigeons per pigeon hole: 1
397s Writing 16 repeats...Output writing finished in: 0.001 seconds
397s Total time: 0.124 seconds
397s Murasaki finished!
397s PASSED MURASAKI
397s 
397s Testing Genepare on NZ_GG705114.fna
397s 18446744073709551330
397s PASSED GENEPARSE
397s 
397s Testing mbfa on NZ_GG705114.fna
397s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
397s PASSED mbfa
397s 
397s Test Murasaki on NZ_GG705115.fna
397s Verbosity level is: 0
397s Writing to: output/test
397s Pattern is: 101
397s Max usable hash bits: 27
397s Hit filter is: 0
397s Hash table type is: EcoHash
397s Hashing every: 1 base
397s Histogram detail is: 0
397s Hashing function is: 3
397s Collision profiling is: disabled
397s Repeats are: unmasked
397s Mergefilter is at: 100
397s Random seed: 1711203603 (automatic)
397s Bitscore output: on
397s Leave status records: no
397s Join neighbors is: off
397s Target memory is: 1.30 GB
397s Retain members is: true
397s Store repeatmap? yes
397s Reverse complement data is generated on the fly
397s Rifts allowed: 0
397s Fuzzy Extension: yes
397s Score by minimum pair: yes
397s Gapped anchors: no
397s Large sequence support is: enabled => seqpos is 8 bytes
397s Murasaki version 1.68.6 (LARGESEQ)
397s Loading NZ_GG705115.fna
397s Read 687bp (687 bytesp) in 0.000 seconds (2.3 MBp/s)
397s Done with forward strand (687bp). Preparing reverse complement...
397s  <-> Reversing metdata.
397s Done.
397s Seq NZ_GG705115.fna loaded. 687 bytes
397s Loading NZ_GG705115.gbk
397s Read 687bp (687 bytesp) in 0.000 seconds (2.9 MBp/s)
397s Done with forward strand (687bp). Preparing reverse complement...
397s  <-> Reversing metdata.
397s Done.
397s Seq NZ_GG705115.gbk loaded. 687 bytes
397s Sequence loading took: 0.001 seconds
397s Forward frequencies:  A:36.3901%  C:17.6128%  G:19.5051%  T:26.492%
397s Global base frequencies:  A/T:62.8821%  C/G:37.1179%
397s Pat: 3 bases long with weight 2
397s    1 101 
397s Computing hash parameters...
397s Using 4 hashbits
397s  0%......... (T -0.101 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.090 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.078 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.056 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.045 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 91%........
397s Acceptable hash function found after 1000 cycles.
397s Best uses 2/2 bases and has 0 empties from 2 inputs.
397s Score: 0.96875 (cf. worst: -4.51562)
397s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
397s Total correlation penalty: 0
397s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
397s                                             10
397s                                             ==
397s w[ 0]>>29:                                 -.C
397s w[ 0]>>30:                                  A.-
397s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
397s Ecolist (optimistic): Expcted entries per list: 8
397s Ecolist (optimistic): Minimum chunks per list: 4
397s Would take minimum 256.000000 bytes to make perfect hash.
397s Hashing 2.68 KB of sequence requires: 
397s  ~ linear (in seq length) hashing cost of 4.35 KB
397s  ~ linear (in seq length) expected anchor cost of 64.41 KB
397s Initial hash table uses: 256 bytes (4 bits, 16 entries)
397s Expected memory usage (without anchors): 4.60 KB
397s Expected memory usage (with anchors): 69.01 KB
397s Hash parameters computed in 0.112 seconds
397s Creating storage structures: 16 entries in 256 bytes space.
397s Storage structures created in: 0.000 seconds
397s 
397s Hashing NZ_GG705115.fna forwards
397s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705115.fna backwards
397s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705115.gbk forwards
397s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705115.gbk backwards
397s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Initial hashing took: 0.003 seconds
397s Extracting anchors from hash-space.
397s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 93%.
397s Anchor extraction completed in: 0.001 seconds
397s Total anchors: 0
397s Anchor extraction + merge time: 0.001 seconds
397s Total processing time: 0.117 seconds
397s Writing anchors...
397s Total seeds used in anchors: 16
397s Hash performance:
397s  Keys used: 16 out of 16 possible (100.00%).
397s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
397s  Average pigeons per pigeon hole: 1
397s Writing 16 repeats...Output writing finished in: 0.001 seconds
397s Total time: 0.118 seconds
397s Murasaki finished!
397s PASSED MURASAKI
397s 
397s Testing Genepare on NZ_GG705115.fna
397s 18446744073709551304
397s PASSED GENEPARSE
397s 
397s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
397s Testing mbfa on NZ_GG705115.fna
397s PASSED mbfa
397s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
397s 
397s Test Murasaki on NZ_GG705116.fna
397s Verbosity level is: 0
397s Writing to: output/test
397s Pattern is: 101
397s Max usable hash bits: 27
397s Hit filter is: 0
397s Hash table type is: EcoHash
397s Hashing every: 1 base
397s Histogram detail is: 0
397s Hashing function is: 3
397s Collision profiling is: disabled
397s Repeats are: unmasked
397s Mergefilter is at: 100
397s Random seed: 1711203603 (automatic)
397s Bitscore output: on
397s Leave status records: no
397s Join neighbors is: off
397s Target memory is: 1.30 GB
397s Retain members is: true
397s Store repeatmap? yes
397s Reverse complement data is generated on the fly
397s Rifts allowed: 0
397s Fuzzy Extension: yes
397s Score by minimum pair: yes
397s Gapped anchors: no
397s Large sequence support is: enabled => seqpos is 8 bytes
397s Murasaki version 1.68.6 (LARGESEQ)
397s Loading NZ_GG705116.fna
397s Read 687bp (687 bytesp) in 0.000 seconds (2.8 MBp/s)
397s Done with forward strand (687bp). Preparing reverse complement...
397s  <-> Reversing metdata.
397s Done.
397s Seq NZ_GG705116.fna loaded. 687 bytes
397s Loading NZ_GG705116.gbk
397s Read 687bp (687 bytesp) in 0.000 seconds (3.8 MBp/s)
397s Done with forward strand (687bp). Preparing reverse complement...
397s  <-> Reversing metdata.
397s Done.
397s Seq NZ_GG705116.gbk loaded. 687 bytes
397s Sequence loading took: 0.000 seconds
397s Forward frequencies:  A:36.3901%  C:18.0495%  G:19.7962%  T:25.7642%
397s Global base frequencies:  A/T:62.1543%  C/G:37.8457%
397s Pat: 3 bases long with weight 2
397s    1 101 
397s Computing hash parameters...
397s Using 4 hashbits
397s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.091 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.079 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.057 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.046 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.035 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 91%........
397s Acceptable hash function found after 1000 cycles.
397s Best uses 2/2 bases and has 0 empties from 2 inputs.
397s Score: 0.96875 (cf. worst: -4.51562)
397s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
397s Total correlation penalty: 0
397s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
397s                                             10
397s                                             ==
397s w[ 0]>>29:                                 -.C
397s w[ 0]>>30:                                  A.-
397s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
397s Ecolist (optimistic): Expcted entries per list: 8
397s Ecolist (optimistic): Minimum chunks per list: 4
397s Would take minimum 256.000000 bytes to make perfect hash.
397s Hashing 2.68 KB of sequence requires: 
397s  ~ linear (in seq length) hashing cost of 4.35 KB
397s  ~ linear (in seq length) expected anchor cost of 64.41 KB
397s Initial hash table uses: 256 bytes (4 bits, 16 entries)
397s Expected memory usage (without anchors): 4.60 KB
397s Expected memory usage (with anchors): 69.01 KB
397s Hash parameters computed in 0.114 seconds
397s Creating storage structures: 16 entries in 256 bytes space.
397s Storage structures created in: 0.000 seconds
397s 
397s Hashing NZ_GG705116.fna forwards
397s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705116.fna backwards
397s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705116.gbk forwards
397s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705116.gbk backwards
397s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Initial hashing took: 0.003 seconds
397s Extracting anchors from hash-space.
397s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 93%.
397s Anchor extraction completed in: 0.001 seconds
397s Total anchors: 0
397s Anchor extraction + merge time: 0.001 seconds
397s Total processing time: 0.119 seconds
397s Writing anchors...
397s Total seeds used in anchors: 16
397s Hash performance:
397s  Keys used: 16 out of 16 possible (100.00%).
397s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
397s  Average pigeons per pigeon hole: 1
397s Writing 16 repeats...Output writing finished in: 0.001 seconds
397s Total time: 0.120 seconds
397s Murasaki finished!
397s PASSED MURASAKI
397s 
397s Testing Genepare on NZ_GG705116.fna
397s 18446744073709551304
397s PASSED GENEPARSE
397s 
397s Testing mbfa on NZ_GG705116.fna
397s PASSED mbfa
397s 
397s Test Murasaki on NZ_GG705117.fna
397s Verbosity level is: 0
397s Writing to: output/test
397s Pattern is: 101
397s Max usable hash bits: 27
397s Hit filter is: 0
397s Hash table type is: EcoHash
397s Hashing every: 1 base
397s Histogram detail is: 0
397s Hashing function is: 3
397s Collision profiling is: disabled
397s Repeats are: unmasked
397s Mergefilter is at: 100
397s Random seed: 1711203603 (automatic)
397s Bitscore output: on
397s Leave status records: no
397s Join neighbors is: off
397s Target memory is: 1.30 GB
397s Retain members is: true
397s Store repeatmap? yes
397s Reverse complement data is generated on the fly
397s Rifts allowed: 0
397s Fuzzy Extension: yes
397s Score by minimum pair: yes
397s Gapped anchors: no
397s Large sequence support is: enabled => seqpos is 8 bytes
397s Murasaki version 1.68.6 (LARGESEQ)
397s Loading NZ_GG705117.fna
397s Read 678bp (678 bytesp) in 0.000 seconds (2.4 MBp/s)
397s Done with forward strand (678bp). Preparing reverse complement...
397s  <-> Reversing metdata.
397s Done.
397s Seq NZ_GG705117.fna loaded. 678 bytes
397s Loading NZ_GG705117.gbk
397s Read 678bp (678 bytesp) in 0.000 seconds (3.0 MBp/s)
397s Done with forward strand (678bp). Preparing reverse complement...
397s  <-> Reversing metdata.
397s Done.
397s Seq NZ_GG705117.gbk loaded. 678 bytes
397s Sequence loading took: 0.001 seconds
397s Forward frequencies:  A:30.3835%  C:19.6165%  G:13.7168%  T:36.2832%
397s Global base frequencies:  A/T:66.6667%  C/G:33.3333%
397s Pat: 3 bases long with weight 2
397s    1 101 
397s Computing hash parameters...
397s Using 4 hashbits
397s  0%......... (T -0.099 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.087 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.076 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.065 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.054 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 91%........
397s Acceptable hash function found after 1000 cycles.
397s Best uses 2/2 bases and has 0 empties from 2 inputs.
397s Score: 0.96875 (cf. worst: -4.51562)
397s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
397s Total correlation penalty: 0
397s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
397s                                             10
397s                                             ==
397s w[ 0]>>29:                                 -.C
397s w[ 0]>>30:                                  A.-
397s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
397s Ecolist (optimistic): Expcted entries per list: 8
397s Ecolist (optimistic): Minimum chunks per list: 4
397s Would take minimum 256.000000 bytes to make perfect hash.
397s Hashing 2.65 KB of sequence requires: 
397s  ~ linear (in seq length) hashing cost of 4.30 KB
397s  ~ linear (in seq length) expected anchor cost of 63.56 KB
397s Initial hash table uses: 256 bytes (4 bits, 16 entries)
397s Expected memory usage (without anchors): 4.55 KB
397s Expected memory usage (with anchors): 68.12 KB
397s Hash parameters computed in 0.110 seconds
397s Creating storage structures: 16 entries in 256 bytes space.
397s Storage structures created in: 0.000 seconds
397s 
397s Hashing NZ_GG705117.fna forwards
397s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705117.fna backwards
397s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705117.gbk forwards
397s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705117.gbk backwards
397s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Initial hashing took: 0.008 seconds
397s Extracting anchors from hash-space.
397s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 93%.
397s Anchor extraction completed in: 0.001 seconds
397s Total anchors: 0
397s Anchor extraction + merge time: 0.001 seconds
397s Total processing time: 0.121 seconds
397s Writing anchors...
397s Total seeds used in anchors: 16
397s Hash performance:
397s  Keys used: 16 out of 16 possible (100.00%).
397s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
397s  Average pigeons per pigeon hole: 1
397s Writing 16 repeats...Output writing finished in: 0.001 seconds
397s Total time: 0.121 seconds
397s Murasaki finished!
397s PASSED MURASAKI
397s 
397s Testing Genepare on NZ_GG705117.fna
397s 18446744073709551295
397s PASSED GENEPARSE
397s 
397s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
397s Testing mbfa on NZ_GG705117.fna
397s PASSED mbfa
397s 
397s Test Murasaki on NZ_GG705118.fna
397s Verbosity level is: 0
397s Writing to: output/test
397s Pattern is: 101
397s Max usable hash bits: 27
397s Hit filter is: 0
397s Hash table type is: EcoHash
397s Hashing every: 1 base
397s Histogram detail is: 0
397s Hashing function is: 3
397s Collision profiling is: disabled
397s Repeats are: unmasked
397s Mergefilter is at: 100
397s Random seed: 1711203603 (automatic)
397s Bitscore output: on
397s Leave status records: no
397s Join neighbors is: off
397s Target memory is: 1.30 GB
397s Retain members is: true
397s Store repeatmap? yes
397s Reverse complement data is generated on the fly
397s Rifts allowed: 0
397s Fuzzy Extension: yes
397s Score by minimum pair: yes
397s Gapped anchors: no
397s Large sequence support is: enabled => seqpos is 8 bytes
397s Murasaki version 1.68.6 (LARGESEQ)
397s Loading NZ_GG705118.fna
397s Read 665bp (665 bytesp) in 0.000 seconds (2.4 MBp/s)
397s Done with forward strand (665bp). Preparing reverse complement...
397s  <-> Reversing metdata.
397s Done.
397s Seq NZ_GG705118.fna loaded. 665 bytes
397s Loading NZ_GG705118.gbk
397s Read 665bp (665 bytesp) in 0.000 seconds (3.6 MBp/s)
397s Done with forward strand (665bp). Preparing reverse complement...
397s  <-> Reversing metdata.
397s Done.
397s Seq NZ_GG705118.gbk loaded. 665 bytes
397s Sequence loading took: 0.001 seconds
397s Forward frequencies:  A:28.7218%  C:21.8045%  G:23.609%  T:25.8647%
397s Global base frequencies:  A/T:54.5865%  C/G:45.4135%
397s Pat: 3 bases long with weight 2
397s    1 101 
397s Computing hash parameters...
397s Using 4 hashbits
397s  0%......... (T -0.096 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.086 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.065 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.054 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.043 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.032 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 91%........
397s Acceptable hash function found after 1000 cycles.
397s Best uses 2/2 bases and has 0 empties from 2 inputs.
397s Score: 0.96875 (cf. worst: -4.51562)
397s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
397s Total correlation penalty: 0
397s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
397s                                             10
397s                                             ==
397s w[ 0]>>29:                                 -.C
397s w[ 0]>>30:                                  A.-
397s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
397s Ecolist (optimistic): Expcted entries per list: 8
397s Ecolist (optimistic): Minimum chunks per list: 4
397s Would take minimum 256.000000 bytes to make perfect hash.
397s Hashing 2.60 KB of sequence requires: 
397s  ~ linear (in seq length) hashing cost of 4.21 KB
397s  ~ linear (in seq length) expected anchor cost of 62.34 KB
397s Initial hash table uses: 256 bytes (4 bits, 16 entries)
397s Expected memory usage (without anchors): 4.46 KB
397s Expected memory usage (with anchors): 66.81 KB
397s Hash parameters computed in 0.108 seconds
397s Creating storage structures: 16 entries in 256 bytes space.
397s Storage structures created in: 0.000 seconds
397s 
397s Hashing NZ_GG705118.fna forwards
397s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705118.fna backwards
397s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705118.gbk forwards
397s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705118.gbk backwards
397s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Initial hashing took: 0.009 seconds
397s Extracting anchors from hash-space.
397s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 93%.
397s Anchor extraction completed in: 0.001 seconds
397s Total anchors: 0
397s Anchor extraction + merge time: 0.001 seconds
397s Total processing time: 0.119 seconds
397s Writing anchors...
397s Total seeds used in anchors: 16
397s Hash performance:
397s  Keys used: 16 out of 16 possible (100.00%).
397s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
397s  Average pigeons per pigeon hole: 1
397s Writing 16 repeats...Output writing finished in: 0.001 seconds
397s Total time: 0.120 seconds
397s Murasaki finished!
397s PASSED MURASAKI
397s 
397s Testing Genepare on NZ_GG705118.fna
397s 18446744073709551282
397s PASSED GENEPARSE
397s 
397s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
397s Testing mbfa on NZ_GG705118.fna
397s PASSED mbfa
397s 
397s Test Murasaki on NZ_GG705119.fna
397s Verbosity level is: 0
397s Writing to: output/test
397s Pattern is: 101
397s Max usable hash bits: 27
397s Hit filter is: 0
397s Hash table type is: EcoHash
397s Hashing every: 1 base
397s Histogram detail is: 0
397s Hashing function is: 3
397s Collision profiling is: disabled
397s Repeats are: unmasked
397s Mergefilter is at: 100
397s Random seed: 1711203603 (automatic)
397s Bitscore output: on
397s Leave status records: no
397s Join neighbors is: off
397s Target memory is: 1.30 GB
397s Retain members is: true
397s Store repeatmap? yes
397s Reverse complement data is generated on the fly
397s Rifts allowed: 0
397s Fuzzy Extension: yes
397s Score by minimum pair: yes
397s Gapped anchors: no
397s Large sequence support is: enabled => seqpos is 8 bytes
397s Murasaki version 1.68.6 (LARGESEQ)
397s Loading NZ_GG705119.fna
397s Read 655bp (655 bytesp) in 0.000 seconds (2.6 MBp/s)
397s Done with forward strand (655bp). Preparing reverse complement...
397s  <-> Reversing metdata.
397s Done.
397s Seq NZ_GG705119.fna loaded. 655 bytes
397s Loading NZ_GG705119.gbk
397s Read 655bp (655 bytesp) in 0.000 seconds (3.7 MBp/s)
397s Done with forward strand (655bp). Preparing reverse complement...
397s  <-> Reversing metdata.
397s Done.
397s Seq NZ_GG705119.gbk loaded. 655 bytes
397s Sequence loading took: 0.000 seconds
397s Forward frequencies:  A:30.3817%  C:21.9847%  G:22.5954%  T:25.0382%
397s Global base frequencies:  A/T:55.4198%  C/G:44.5802%
397s Pat: 3 bases long with weight 2
397s    1 101 
397s Computing hash parameters...
397s Using 4 hashbits
397s  0%......... (T -0.098 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.087 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.076 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.065 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.054 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.043 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 91%........
397s Acceptable hash function found after 1000 cycles.
397s Best uses 2/2 bases and has 0 empties from 2 inputs.
397s Score: 0.96875 (cf. worst: -4.51562)
397s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
397s Total correlation penalty: 0
397s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
397s                                             10
397s                                             ==
397s w[ 0]>>29:                                 -.C
397s w[ 0]>>30:                                  A.-
397s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
397s Ecolist (optimistic): Expcted entries per list: 8
397s Ecolist (optimistic): Minimum chunks per list: 4
397s Would take minimum 256.000000 bytes to make perfect hash.
397s Hashing 2.56 KB of sequence requires: 
397s  ~ linear (in seq length) hashing cost of 4.15 KB
397s  ~ linear (in seq length) expected anchor cost of 61.41 KB
397s Initial hash table uses: 256 bytes (4 bits, 16 entries)
397s Expected memory usage (without anchors): 4.40 KB
397s Expected memory usage (with anchors): 65.81 KB
397s Hash parameters computed in 0.108 seconds
397s Creating storage structures: 16 entries in 256 bytes space.
397s Storage structures created in: 0.000 seconds
397s 
397s Hashing NZ_GG705119.fna forwards
397s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705119.fna backwards
397s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705119.gbk forwards
397s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Hashing NZ_GG705119.gbk backwards
397s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 90%........
397s Initial hashing took: 0.003 seconds
397s Extracting anchors from hash-space.
397s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:03 2024
397s 93%.
397s Anchor extraction completed in: 0.001 seconds
397s Total anchors: 0
397s Anchor extraction + merge time: 0.001 seconds
397s Total processing time: 0.113 seconds
397s Writing anchors...
397s Total seeds used in anchors: 16
397s Hash performance:
397s  Keys used: 16 out of 16 possible (100.00%).
397s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
397s  Average pigeons per pigeon hole: 1
397s Writing 16 repeats...Output writing finished in: 0.001 seconds
397s Total time: 0.113 seconds
397s Murasaki finished!
397s PASSED MURASAKI
397s 
397s Testing Genepare on NZ_GG705119.fna
397s 18446744073709551272
397s PASSED GENEPARSE
397s 
397s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
398s Testing mbfa on NZ_GG705119.fna
398s PASSED mbfa
398s 
398s Test Murasaki on NZ_GG705120.fna
398s Verbosity level is: 0
398s Writing to: output/test
398s Pattern is: 101
398s Max usable hash bits: 27
398s Hit filter is: 0
398s Hash table type is: EcoHash
398s Hashing every: 1 base
398s Histogram detail is: 0
398s Hashing function is: 3
398s Collision profiling is: disabled
398s Repeats are: unmasked
398s Mergefilter is at: 100
398s Random seed: 1711203603 (automatic)
398s Bitscore output: on
398s Leave status records: no
398s Join neighbors is: off
398s Target memory is: 1.30 GB
398s Retain members is: true
398s Store repeatmap? yes
398s Reverse complement data is generated on the fly
398s Rifts allowed: 0
398s Fuzzy Extension: yes
398s Score by minimum pair: yes
398s Gapped anchors: no
398s Large sequence support is: enabled => seqpos is 8 bytes
398s Murasaki version 1.68.6 (LARGESEQ)
398s Loading NZ_GG705120.fna
398s Read 638bp (638 bytesp) in 0.000 seconds (2.3 MBp/s)
398s Done with forward strand (638bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705120.fna loaded. 638 bytes
398s Loading NZ_GG705120.gbk
398s Read 638bp (638 bytesp) in 0.000 seconds (3.4 MBp/s)
398s Done with forward strand (638bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705120.gbk loaded. 638 bytes
398s Sequence loading took: 0.001 seconds
398s Forward frequencies:  A:23.511%  C:22.7273%  G:24.9216%  T:28.8401%
398s Global base frequencies:  A/T:52.3511%  C/G:47.6489%
398s Pat: 3 bases long with weight 2
398s    1 101 
398s Computing hash parameters...
398s Using 4 hashbits
398s  0%......... (T -0.096 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.086 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.075 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.065 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.054 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%........
398s Acceptable hash function found after 1000 cycles.
398s Best uses 2/2 bases and has 0 empties from 2 inputs.
398s Score: 0.96875 (cf. worst: -4.51562)
398s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
398s Total correlation penalty: 0
398s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
398s                                             10
398s                                             ==
398s w[ 0]>>29:                                 -.C
398s w[ 0]>>30:                                  A.-
398s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
398s Ecolist (optimistic): Expcted entries per list: 8
398s Ecolist (optimistic): Minimum chunks per list: 4
398s Would take minimum 256.000000 bytes to make perfect hash.
398s Hashing 2.49 KB of sequence requires: 
398s  ~ linear (in seq length) hashing cost of 4.05 KB
398s  ~ linear (in seq length) expected anchor cost of 59.81 KB
398s Initial hash table uses: 256 bytes (4 bits, 16 entries)
398s Expected memory usage (without anchors): 4.30 KB
398s Expected memory usage (with anchors): 64.11 KB
398s Hash parameters computed in 0.109 seconds
398s Creating storage structures: 16 entries in 256 bytes space.
398s Storage structures created in: 0.000 seconds
398s 
398s Hashing NZ_GG705120.fna forwards
398s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 90%........
398s Hashing NZ_GG705120.fna backwards
398s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 90%........
398s Hashing NZ_GG705120.gbk forwards
398s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 90%........
398s Hashing NZ_GG705120.gbk backwards
398s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 90%........
398s Initial hashing took: 0.005 seconds
398s Extracting anchors from hash-space.
398s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 93%.
398s Anchor extraction completed in: 0.001 seconds
398s Total anchors: 0
398s Anchor extraction + merge time: 0.001 seconds
398s Total processing time: 0.116 seconds
398s Writing anchors...
398s Total seeds used in anchors: 16
398s Hash performance:
398s  Keys used: 16 out of 16 possible (100.00%).
398s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
398s  Average pigeons per pigeon hole: 1
398s Writing 16 repeats...Output writing finished in: 0.001 seconds
398s Total time: 0.117 seconds
398s Murasaki finished!
398s PASSED MURASAKI
398s 
398s Testing Genepare on NZ_GG705120.fna
398s 18446744073709551255
398s PASSED GENEPARSE
398s 
398s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
398s Testing mbfa on NZ_GG705120.fna
398s PASSED mbfa
398s 
398s Test Murasaki on NZ_GG705121.fna
398s Verbosity level is: 0
398s Writing to: output/test
398s Pattern is: 101
398s Max usable hash bits: 27
398s Hit filter is: 0
398s Hash table type is: EcoHash
398s Hashing every: 1 base
398s Histogram detail is: 0
398s Hashing function is: 3
398s Collision profiling is: disabled
398s Repeats are: unmasked
398s Mergefilter is at: 100
398s Random seed: 1711203604 (automatic)
398s Bitscore output: on
398s Leave status records: no
398s Join neighbors is: off
398s Target memory is: 1.30 GB
398s Retain members is: true
398s Store repeatmap? yes
398s Reverse complement data is generated on the fly
398s Rifts allowed: 0
398s Fuzzy Extension: yes
398s Score by minimum pair: yes
398s Gapped anchors: no
398s Large sequence support is: enabled => seqpos is 8 bytes
398s Murasaki version 1.68.6 (LARGESEQ)
398s Loading NZ_GG705121.fna
398s Read 615bp (615 bytesp) in 0.000 seconds (2.2 MBp/s)
398s Done with forward strand (615bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705121.fna loaded. 615 bytes
398s Loading NZ_GG705121.gbk
398s Read 615bp (615 bytesp) in 0.000 seconds (2.9 MBp/s)
398s Done with forward strand (615bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705121.gbk loaded. 615 bytes
398s Sequence loading took: 0.001 seconds
398s Forward frequencies:  A:33.8211%  C:18.374%  G:17.8862%  T:29.9187%
398s Global base frequencies:  A/T:63.7398%  C/G:36.2602%
398s Pat: 3 bases long with weight 2
398s    1 101 
398s Computing hash parameters...
398s Using 4 hashbits
398s  0%......... (T -0.102 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.090 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.079 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%........
398s Acceptable hash function found after 1000 cycles.
398s Best uses 2/2 bases and has 0 empties from 2 inputs.
398s Score: 0.96875 (cf. worst: -4.51562)
398s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
398s Total correlation penalty: 0
398s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
398s                                             10
398s                                             ==
398s w[ 0]>>29:                                 -.C
398s w[ 0]>>30:                                  A.-
398s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
398s Ecolist (optimistic): Expcted entries per list: 8
398s Ecolist (optimistic): Minimum chunks per list: 4
398s Would take minimum 256.000000 bytes to make perfect hash.
398s Hashing 2.40 KB of sequence requires: 
398s  ~ linear (in seq length) hashing cost of 3.90 KB
398s  ~ linear (in seq length) expected anchor cost of 57.66 KB
398s Initial hash table uses: 256 bytes (4 bits, 16 entries)
398s Expected memory usage (without anchors): 4.15 KB
398s Expected memory usage (with anchors): 61.80 KB
398s Hash parameters computed in 0.111 seconds
398s Creating storage structures: 16 entries in 256 bytes space.
398s Storage structures created in: 0.000 seconds
398s 
398s Hashing NZ_GG705121.fna forwards
398s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%.......
398s Hashing NZ_GG705121.fna backwards
398s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%.......
398s Hashing NZ_GG705121.gbk forwards
398s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%.......
398s Hashing NZ_GG705121.gbk backwards
398s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%.......
398s Initial hashing took: 0.002 seconds
398s Extracting anchors from hash-space.
398s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 43%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 93%.
398s Anchor extraction completed in: 0.001 seconds
398s Total anchors: 0
398s Anchor extraction + merge time: 0.001 seconds
398s Total processing time: 0.116 seconds
398s Writing anchors...
398s Total seeds used in anchors: 16
398s Hash performance:
398s  Keys used: 16 out of 16 possible (100.00%).
398s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
398s  Average pigeons per pigeon hole: 1
398s Writing 16 repeats...Output writing finished in: 0.001 seconds
398s Total time: 0.116 seconds
398s Murasaki finished!
398s PASSED MURASAKI
398s 
398s Testing Genepare on NZ_GG705121.fna
398s 18446744073709551232
398s PASSED GENEPARSE
398s 
398s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
398s Testing mbfa on NZ_GG705121.fna
398s PASSED mbfa
398s 
398s Test Murasaki on NZ_GG705122.fna
398s Verbosity level is: 0
398s Writing to: output/test
398s Pattern is: 101
398s Max usable hash bits: 27
398s Hit filter is: 0
398s Hash table type is: EcoHash
398s Hashing every: 1 base
398s Histogram detail is: 0
398s Hashing function is: 3
398s Collision profiling is: disabled
398s Repeats are: unmasked
398s Mergefilter is at: 100
398s Random seed: 1711203604 (automatic)
398s Bitscore output: on
398s Leave status records: no
398s Join neighbors is: off
398s Target memory is: 1.30 GB
398s Retain members is: true
398s Store repeatmap? yes
398s Reverse complement data is generated on the fly
398s Rifts allowed: 0
398s Fuzzy Extension: yes
398s Score by minimum pair: yes
398s Gapped anchors: no
398s Large sequence support is: enabled => seqpos is 8 bytes
398s Murasaki version 1.68.6 (LARGESEQ)
398s Loading NZ_GG705122.fna
398s Read 603bp (603 bytesp) in 0.000 seconds (2.2 MBp/s)
398s Done with forward strand (603bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705122.fna loaded. 603 bytes
398s Loading NZ_GG705122.gbk
398s Read 603bp (603 bytesp) in 0.000 seconds (2.8 MBp/s)
398s Done with forward strand (603bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705122.gbk loaded. 603 bytes
398s Sequence loading took: 0.001 seconds
398s Forward frequencies:  A:30.8458%  C:18.2421%  G:20.8955%  T:30.0166%
398s Global base frequencies:  A/T:60.8624%  C/G:39.1376%
398s Pat: 3 bases long with weight 2
398s    1 101 
398s Computing hash parameters...
398s Using 4 hashbits
398s  0%......... (T -0.108 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.092 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.080 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.056 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.045 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.034 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%........
398s Acceptable hash function found after 1000 cycles.
398s Best uses 2/2 bases and has 0 empties from 2 inputs.
398s Score: 0.96875 (cf. worst: -4.51562)
398s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
398s Total correlation penalty: 0
398s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
398s                                             10
398s                                             ==
398s w[ 0]>>29:                                 -.C
398s w[ 0]>>30:                                  A.-
398s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
398s Ecolist (optimistic): Expcted entries per list: 8
398s Ecolist (optimistic): Minimum chunks per list: 4
398s Would take minimum 256.000000 bytes to make perfect hash.
398s Hashing 2.36 KB of sequence requires: 
398s  ~ linear (in seq length) hashing cost of 3.82 KB
398s  ~ linear (in seq length) expected anchor cost of 56.53 KB
398s Initial hash table uses: 256 bytes (4 bits, 16 entries)
398s Expected memory usage (without anchors): 4.07 KB
398s Expected memory usage (with anchors): 60.60 KB
398s Hash parameters computed in 0.111 seconds
398s Creating storage structures: 16 entries in 256 bytes space.
398s Storage structures created in: 0.000 seconds
398s 
398s Hashing NZ_GG705122.fna forwards
398s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 71%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%.......
398s Hashing NZ_GG705122.fna backwards
398s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 71%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%.......
398s Hashing NZ_GG705122.gbk forwards
398s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 71%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%.......
398s Hashing NZ_GG705122.gbk backwards
398s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 71%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%.......
398s Initial hashing took: 0.002 seconds
398s Extracting anchors from hash-space.
398s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 93%.
398s Anchor extraction completed in: 0.001 seconds
398s Total anchors: 0
398s Anchor extraction + merge time: 0.001 seconds
398s Total processing time: 0.115 seconds
398s Writing anchors...
398s Total seeds used in anchors: 16
398s Hash performance:
398s  Keys used: 16 out of 16 possible (100.00%).
398s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
398s  Average pigeons per pigeon hole: 1
398s Writing 16 repeats...Output writing finished in: 0.001 seconds
398s Total time: 0.116 seconds
398s Murasaki finished!
398s PASSED MURASAKI
398s 
398s Testing Genepare on NZ_GG705122.fna
398s 18446744073709551220
398s PASSED GENEPARSE
398s 
398s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
398s Testing mbfa on NZ_GG705122.fna
398s PASSED mbfa
398s 
398s Test Murasaki on NZ_GG705123.fna
398s Verbosity level is: 0
398s Writing to: output/test
398s Pattern is: 101
398s Max usable hash bits: 27
398s Hit filter is: 0
398s Hash table type is: EcoHash
398s Hashing every: 1 base
398s Histogram detail is: 0
398s Hashing function is: 3
398s Collision profiling is: disabled
398s Repeats are: unmasked
398s Mergefilter is at: 100
398s Random seed: 1711203604 (automatic)
398s Bitscore output: on
398s Leave status records: no
398s Join neighbors is: off
398s Target memory is: 1.30 GB
398s Retain members is: true
398s Store repeatmap? yes
398s Reverse complement data is generated on the fly
398s Rifts allowed: 0
398s Fuzzy Extension: yes
398s Score by minimum pair: yes
398s Gapped anchors: no
398s Large sequence support is: enabled => seqpos is 8 bytes
398s Murasaki version 1.68.6 (LARGESEQ)
398s Loading NZ_GG705123.fna
398s Read 603bp (603 bytesp) in 0.000 seconds (2.3 MBp/s)
398s Done with forward strand (603bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705123.fna loaded. 603 bytes
398s Loading NZ_GG705123.gbk
398s Read 603bp (603 bytesp) in 0.000 seconds (3.4 MBp/s)
398s Done with forward strand (603bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705123.gbk loaded. 603 bytes
398s Sequence loading took: 0.000 seconds
398s Forward frequencies:  A:30.6799%  C:18.0763%  G:20.5638%  T:30.6799%
398s Global base frequencies:  A/T:61.3599%  C/G:38.6401%
398s Pat: 3 bases long with weight 2
398s    1 101 
398s Computing hash parameters...
398s Using 4 hashbits
398s  0%......... (T -0.101 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.089 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.079 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%........
398s Acceptable hash function found after 1000 cycles.
398s Best uses 2/2 bases and has 0 empties from 2 inputs.
398s Score: 0.96875 (cf. worst: -4.51562)
398s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
398s Total correlation penalty: 0
398s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
398s                                             10
398s                                             ==
398s w[ 0]>>29:                                 -.C
398s w[ 0]>>30:                                  A.-
398s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
398s Ecolist (optimistic): Expcted entries per list: 8
398s Ecolist (optimistic): Minimum chunks per list: 4
398s Would take minimum 256.000000 bytes to make perfect hash.
398s Hashing 2.36 KB of sequence requires: 
398s  ~ linear (in seq length) hashing cost of 3.82 KB
398s  ~ linear (in seq length) expected anchor cost of 56.53 KB
398s Initial hash table uses: 256 bytes (4 bits, 16 entries)
398s Expected memory usage (without anchors): 4.07 KB
398s Expected memory usage (with anchors): 60.60 KB
398s Hash parameters computed in 0.110 seconds
398s Creating storage structures: 16 entries in 256 bytes space.
398s Storage structures created in: 0.000 seconds
398s 
398s Hashing NZ_GG705123.fna forwards
398s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 71%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%.......
398s Hashing NZ_GG705123.fna backwards
398s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 71%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%.......
398s Hashing NZ_GG705123.gbk forwards
398s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 71%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%.......
398s Hashing NZ_GG705123.gbk backwards
398s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 71%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%.......
398s Initial hashing took: 0.002 seconds
398s Extracting anchors from hash-space.
398s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 93%.
398s Anchor extraction completed in: 0.001 seconds
398s Total anchors: 0
398s Anchor extraction + merge time: 0.001 seconds
398s Total processing time: 0.114 seconds
398s Writing anchors...
398s Total seeds used in anchors: 16
398s Hash performance:
398s  Keys used: 16 out of 16 possible (100.00%).
398s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
398s  Average pigeons per pigeon hole: 1
398s Writing 16 repeats...Output writing finished in: 0.001 seconds
398s Total time: 0.115 seconds
398s Murasaki finished!
398s PASSED MURASAKI
398s 
398s Testing Genepare on NZ_GG705123.fna
398s 18446744073709551220
398s PASSED GENEPARSE
398s 
398s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
398s Testing mbfa on NZ_GG705123.fna
398s PASSED mbfa
398s 
398s Test Murasaki on NZ_GG705124.fna
398s Verbosity level is: 0
398s Writing to: output/test
398s Pattern is: 101
398s Max usable hash bits: 27
398s Hit filter is: 0
398s Hash table type is: EcoHash
398s Hashing every: 1 base
398s Histogram detail is: 0
398s Hashing function is: 3
398s Collision profiling is: disabled
398s Repeats are: unmasked
398s Mergefilter is at: 100
398s Random seed: 1711203604 (automatic)
398s Bitscore output: on
398s Leave status records: no
398s Join neighbors is: off
398s Target memory is: 1.30 GB
398s Retain members is: true
398s Store repeatmap? yes
398s Reverse complement data is generated on the fly
398s Rifts allowed: 0
398s Fuzzy Extension: yes
398s Score by minimum pair: yes
398s Gapped anchors: no
398s Large sequence support is: enabled => seqpos is 8 bytes
398s Murasaki version 1.68.6 (LARGESEQ)
398s Loading NZ_GG705124.fna
398s Read 597bp (597 bytesp) in 0.000 seconds (2.1 MBp/s)
398s Done with forward strand (597bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705124.fna loaded. 597 bytes
398s Loading NZ_GG705124.gbk
398s Read 597bp (597 bytesp) in 0.000 seconds (2.9 MBp/s)
398s Done with forward strand (597bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705124.gbk loaded. 597 bytes
398s Sequence loading took: 0.001 seconds
398s Forward frequencies:  A:38.6935%  C:10.8878%  G:20.268%  T:30.1508%
398s Global base frequencies:  A/T:68.8442%  C/G:31.1558%
398s Pat: 3 bases long with weight 2
398s    1 101 
398s Computing hash parameters...
398s Using 4 hashbits
398s  0%......... (T -0.099 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%........
398s Acceptable hash function found after 1000 cycles.
398s Best uses 2/2 bases and has 0 empties from 2 inputs.
398s Score: 0.96875 (cf. worst: -4.51562)
398s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
398s Total correlation penalty: 0
398s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
398s                                             10
398s                                             ==
398s w[ 0]>>29:                                 -.C
398s w[ 0]>>30:                                  A.-
398s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
398s Ecolist (optimistic): Expcted entries per list: 8
398s Ecolist (optimistic): Minimum chunks per list: 4
398s Would take minimum 256.000000 bytes to make perfect hash.
398s Hashing 2.33 KB of sequence requires: 
398s  ~ linear (in seq length) hashing cost of 3.78 KB
398s  ~ linear (in seq length) expected anchor cost of 55.97 KB
398s Initial hash table uses: 256 bytes (4 bits, 16 entries)
398s Expected memory usage (without anchors): 4.03 KB
398s Expected memory usage (with anchors): 60.00 KB
398s Hash parameters computed in 0.110 seconds
398s Creating storage structures: 16 entries in 256 bytes space.
398s Storage structures created in: 0.000 seconds
398s 
398s Hashing NZ_GG705124.fna forwards
398s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 90%........
398s Hashing NZ_GG705124.fna backwards
398s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 90%........
398s Hashing NZ_GG705124.gbk forwards
398s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 90%........
398s Hashing NZ_GG705124.gbk backwards
398s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 90%........
398s Initial hashing took: 0.005 seconds
398s Extracting anchors from hash-space.
398s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 93%.
398s Anchor extraction completed in: 0.001 seconds
398s Total anchors: 0
398s Anchor extraction + merge time: 0.001 seconds
398s Total processing time: 0.118 seconds
398s Writing anchors...
398s Total seeds used in anchors: 16
398s Hash performance:
398s  Keys used: 16 out of 16 possible (100.00%).
398s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
398s  Average pigeons per pigeon hole: 1
398s Writing 16 repeats...Output writing finished in: 0.001 seconds
398s Total time: 0.118 seconds
398s Murasaki finished!
398s PASSED MURASAKI
398s 
398s Testing Genepare on NZ_GG705124.fna
398s 18446744073709551214
398s PASSED GENEPARSE
398s 
398s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
398s Testing mbfa on NZ_GG705124.fna
398s PASSED mbfa
398s 
398s Test Murasaki on NZ_GG705125.fna
398s Verbosity level is: 0
398s Writing to: output/test
398s Pattern is: 101
398s Max usable hash bits: 27
398s Hit filter is: 0
398s Hash table type is: EcoHash
398s Hashing every: 1 base
398s Histogram detail is: 0
398s Hashing function is: 3
398s Collision profiling is: disabled
398s Repeats are: unmasked
398s Mergefilter is at: 100
398s Random seed: 1711203604 (automatic)
398s Bitscore output: on
398s Leave status records: no
398s Join neighbors is: off
398s Target memory is: 1.30 GB
398s Retain members is: true
398s Store repeatmap? yes
398s Reverse complement data is generated on the fly
398s Rifts allowed: 0
398s Fuzzy Extension: yes
398s Score by minimum pair: yes
398s Gapped anchors: no
398s Large sequence support is: enabled => seqpos is 8 bytes
398s Murasaki version 1.68.6 (LARGESEQ)
398s Loading NZ_GG705125.fna
398s Read 583bp (583 bytesp) in 0.000 seconds (2.3 MBp/s)
398s Done with forward strand (583bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705125.fna loaded. 583 bytes
398s Loading NZ_GG705125.gbk
398s Read 583bp (583 bytesp) in 0.000 seconds (2.9 MBp/s)
398s Done with forward strand (583bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705125.gbk loaded. 583 bytes
398s Sequence loading took: 0.000 seconds
398s Forward frequencies:  A:27.7873%  C:20.5832%  G:18.8679%  T:32.7616%
398s Global base frequencies:  A/T:60.5489%  C/G:39.4511%
398s Pat: 3 bases long with weight 2
398s    1 101 
398s Computing hash parameters...
398s Using 4 hashbits
398s  0%......... (T -0.098 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.088 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.078 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.056 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.045 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%........
398s Acceptable hash function found after 1000 cycles.
398s Best uses 2/2 bases and has 0 empties from 2 inputs.
398s Score: 0.96875 (cf. worst: -4.51562)
398s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
398s Total correlation penalty: 0
398s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
398s                                             10
398s                                             ==
398s w[ 0]>>29:                                 -.C
398s w[ 0]>>30:                                  A.-
398s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
398s Ecolist (optimistic): Expcted entries per list: 8
398s Ecolist (optimistic): Minimum chunks per list: 4
398s Would take minimum 256.000000 bytes to make perfect hash.
398s Hashing 2.28 KB of sequence requires: 
398s  ~ linear (in seq length) hashing cost of 3.69 KB
398s  ~ linear (in seq length) expected anchor cost of 54.66 KB
398s Initial hash table uses: 256 bytes (4 bits, 16 entries)
398s Expected memory usage (without anchors): 3.94 KB
398s Expected memory usage (with anchors): 58.60 KB
398s Hash parameters computed in 0.111 seconds
398s Creating storage structures: 16 entries in 256 bytes space.
398s Storage structures created in: 0.000 seconds
398s 
398s Hashing NZ_GG705125.fna forwards
398s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 71%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%........
398s Hashing NZ_GG705125.fna backwards
398s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 71%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%........
398s Hashing NZ_GG705125.gbk forwards
398s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 71%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%........
398s Hashing NZ_GG705125.gbk backwards
398s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 71%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 91%........
398s Initial hashing took: 0.001 seconds
398s Extracting anchors from hash-space.
398s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 93%.
398s Anchor extraction completed in: 0.001 seconds
398s Total anchors: 0
398s Anchor extraction + merge time: 0.001 seconds
398s Total processing time: 0.114 seconds
398s Writing anchors...
398s Total seeds used in anchors: 16
398s Hash performance:
398s  Keys used: 16 out of 16 possible (100.00%).
398s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
398s  Average pigeons per pigeon hole: 1
398s Writing 16 repeats...Output writing finished in: 0.001 seconds
398s Total time: 0.114 seconds
398s Murasaki finished!
398s PASSED MURASAKI
398s 
398s Testing Genepare on NZ_GG705125.fna
398s 18446744073709551200
398s PASSED GENEPARSE
398s 
398s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
398s Testing mbfa on NZ_GG705125.fna
398s PASSED mbfa
398s 
398s Test Murasaki on NZ_GG705126.fna
398s Verbosity level is: 0
398s Writing to: output/test
398s Pattern is: 101
398s Max usable hash bits: 27
398s Hit filter is: 0
398s Hash table type is: EcoHash
398s Hashing every: 1 base
398s Histogram detail is: 0
398s Hashing function is: 3
398s Collision profiling is: disabled
398s Repeats are: unmasked
398s Mergefilter is at: 100
398s Random seed: 1711203604 (automatic)
398s Bitscore output: on
398s Leave status records: no
398s Join neighbors is: off
398s Target memory is: 1.30 GB
398s Retain members is: true
398s Store repeatmap? yes
398s Reverse complement data is generated on the fly
398s Rifts allowed: 0
398s Fuzzy Extension: yes
398s Score by minimum pair: yes
398s Gapped anchors: no
398s Large sequence support is: enabled => seqpos is 8 bytes
398s Murasaki version 1.68.6 (LARGESEQ)
398s Loading NZ_GG705126.fna
398s Read 559bp (559 bytesp) in 0.000 seconds (2.0 MBp/s)
398s Done with forward strand (559bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705126.fna loaded. 559 bytes
398s Loading NZ_GG705126.gbk
398s Read 559bp (559 bytesp) in 0.000 seconds (2.7 MBp/s)
398s Done with forward strand (559bp). Preparing reverse complement...
398s  <-> Reversing metdata.
398s Done.
398s Seq NZ_GG705126.gbk loaded. 559 bytes
398s Sequence loading took: 0.001 seconds
398s Forward frequencies:  A:37.3882%  C:13.9535%  G:15.2057%  T:33.4526%
398s Global base frequencies:  A/T:70.8408%  C/G:29.1592%
398s Pat: 3 bases long with weight 2
398s    1 101 
398s Computing hash parameters...
398s Using 4 hashbits
398s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 10%......... (T -0.089 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 20%......... (T -0.077 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 30%......... (T -0.066 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 40%......... (T -0.055 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 50%......... (T -0.044 seconds) ETA: Sat Mar 23 14:20:04 2024
398s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 70%......... (T -0.022 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 91%........
399s Acceptable hash function found after 1000 cycles.
399s Best uses 2/2 bases and has 0 empties from 2 inputs.
399s Score: 0.96875 (cf. worst: -4.51562)
399s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
399s Total correlation penalty: 0
399s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
399s                                             10
399s                                             ==
399s w[ 0]>>29:                                 -.C
399s w[ 0]>>30:                                  A.-
399s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
399s Ecolist (optimistic): Expcted entries per list: 8
399s Ecolist (optimistic): Minimum chunks per list: 4
399s Would take minimum 256.000000 bytes to make perfect hash.
399s Hashing 2.18 KB of sequence requires: 
399s  ~ linear (in seq length) hashing cost of 3.54 KB
399s  ~ linear (in seq length) expected anchor cost of 52.41 KB
399s Initial hash table uses: 256 bytes (4 bits, 16 entries)
399s Expected memory usage (without anchors): 3.79 KB
399s Expected memory usage (with anchors): 56.20 KB
399s Hash parameters computed in 0.109 seconds
399s Creating storage structures: 16 entries in 256 bytes space.
399s Storage structures created in: 0.000 seconds
399s 
399s Hashing NZ_GG705126.fna forwards
399s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 90%........
399s Hashing NZ_GG705126.fna backwards
399s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 90%........
399s Hashing NZ_GG705126.gbk forwards
399s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 90%........
399s Hashing NZ_GG705126.gbk backwards
399s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:04 2024
399s 90%........
399s Initial hashing took: 0.003 seconds
399s Extracting anchors from hash-space.
399s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s  6%. (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 93%.
399s Anchor extraction completed in: 0.001 seconds
399s Total anchors: 0
399s Anchor extraction + merge time: 0.001 seconds
399s Total processing time: 0.115 seconds
399s Writing anchors...
399s Total seeds used in anchors: 16
399s Hash performance:
399s  Keys used: 16 out of 16 possible (100.00%).
399s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
399s  Average pigeons per pigeon hole: 1
399s Writing 16 repeats...Output writing finished in: 0.001 seconds
399s Total time: 0.115 seconds
399s Murasaki finished!
399s PASSED MURASAKI
399s 
399s Testing Genepare on NZ_GG705126.fna
399s 18446744073709551176
399s PASSED GENEPARSE
399s 
399s Testing mbfa on NZ_GG705126.fna
399s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
399s PASSED mbfa
399s 
399s Test Murasaki on NZ_GG705127.fna
399s Verbosity level is: 0
399s Writing to: output/test
399s Pattern is: 101
399s Max usable hash bits: 27
399s Hit filter is: 0
399s Hash table type is: EcoHash
399s Hashing every: 1 base
399s Histogram detail is: 0
399s Hashing function is: 3
399s Collision profiling is: disabled
399s Repeats are: unmasked
399s Mergefilter is at: 100
399s Random seed: 1711203605 (automatic)
399s Bitscore output: on
399s Leave status records: no
399s Join neighbors is: off
399s Target memory is: 1.30 GB
399s Retain members is: true
399s Store repeatmap? yes
399s Reverse complement data is generated on the fly
399s Rifts allowed: 0
399s Fuzzy Extension: yes
399s Score by minimum pair: yes
399s Gapped anchors: no
399s Large sequence support is: enabled => seqpos is 8 bytes
399s Murasaki version 1.68.6 (LARGESEQ)
399s Loading NZ_GG705127.fna
399s Read 549bp (549 bytesp) in 0.000 seconds (1.9 MBp/s)
399s Done with forward strand (549bp). Preparing reverse complement...
399s  <-> Reversing metdata.
399s Done.
399s Seq NZ_GG705127.fna loaded. 549 bytes
399s Loading NZ_GG705127.gbk
399s Read 549bp (549 bytesp) in 0.000 seconds (2.6 MBp/s)
399s Done with forward strand (549bp). Preparing reverse complement...
399s  <-> Reversing metdata.
399s Done.
399s Seq NZ_GG705127.gbk loaded. 549 bytes
399s Sequence loading took: 0.001 seconds
399s Forward frequencies:  A:32.969%  C:20.4007%  G:20.765%  T:25.8652%
399s Global base frequencies:  A/T:58.8342%  C/G:41.1658%
399s Pat: 3 bases long with weight 2
399s    1 101 
399s Computing hash parameters...
399s Using 4 hashbits
399s  0%......... (T -0.101 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.093 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.091 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.076 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.062 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%......... (T -0.049 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%......... (T -0.038 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%......... (T -0.025 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%......... (T -0.011 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 91%........
399s Acceptable hash function found after 1000 cycles.
399s Best uses 2/2 bases and has 0 empties from 2 inputs.
399s Score: 0.96875 (cf. worst: -4.51562)
399s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
399s Total correlation penalty: 0
399s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
399s                                             10
399s                                             ==
399s w[ 0]>>29:                                 -.C
399s w[ 0]>>30:                                  A.-
399s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
399s Ecolist (optimistic): Expcted entries per list: 8
399s Ecolist (optimistic): Minimum chunks per list: 4
399s Would take minimum 256.000000 bytes to make perfect hash.
399s Hashing 2.14 KB of sequence requires: 
399s  ~ linear (in seq length) hashing cost of 3.48 KB
399s  ~ linear (in seq length) expected anchor cost of 51.47 KB
399s Initial hash table uses: 256 bytes (4 bits, 16 entries)
399s Expected memory usage (without anchors): 3.73 KB
399s Expected memory usage (with anchors): 55.20 KB
399s Hash parameters computed in 0.124 seconds
399s Creating storage structures: 16 entries in 256 bytes space.
399s Storage structures created in: 0.000 seconds
399s 
399s Hashing NZ_GG705127.fna forwards
399s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 90%........
399s Hashing NZ_GG705127.fna backwards
399s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 90%........
399s Hashing NZ_GG705127.gbk forwards
399s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 90%........
399s Hashing NZ_GG705127.gbk backwards
399s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 90%........
399s Initial hashing took: 0.002 seconds
399s Extracting anchors from hash-space.
399s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 93%.
399s Anchor extraction completed in: 0.001 seconds
399s Total anchors: 0
399s Anchor extraction + merge time: 0.001 seconds
399s Total processing time: 0.128 seconds
399s Writing anchors...
399s Total seeds used in anchors: 16
399s Hash performance:
399s  Keys used: 16 out of 16 possible (100.00%).
399s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
399s  Average pigeons per pigeon hole: 1
399s Writing 16 repeats...Output writing finished in: 0.000 seconds
399s Total time: 0.129 seconds
399s Murasaki finished!
399s PASSED MURASAKI
399s 
399s Testing Genepare on NZ_GG705127.fna
399s 18446744073709551166
399s PASSED GENEPARSE
399s 
399s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
399s Testing mbfa on NZ_GG705127.fna
399s PASSED mbfa
399s 
399s Test Murasaki on NZ_GG705128.fna
399s Verbosity level is: 0
399s Writing to: output/test
399s Pattern is: 101
399s Max usable hash bits: 27
399s Hit filter is: 0
399s Hash table type is: EcoHash
399s Hashing every: 1 base
399s Histogram detail is: 0
399s Hashing function is: 3
399s Collision profiling is: disabled
399s Repeats are: unmasked
399s Mergefilter is at: 100
399s Random seed: 1711203605 (automatic)
399s Bitscore output: on
399s Leave status records: no
399s Join neighbors is: off
399s Target memory is: 1.30 GB
399s Retain members is: true
399s Store repeatmap? yes
399s Reverse complement data is generated on the fly
399s Rifts allowed: 0
399s Fuzzy Extension: yes
399s Score by minimum pair: yes
399s Gapped anchors: no
399s Large sequence support is: enabled => seqpos is 8 bytes
399s Murasaki version 1.68.6 (LARGESEQ)
399s Loading NZ_GG705128.fna
399s Read 548bp (548 bytesp) in 0.000 seconds (2.0 MBp/s)
399s Done with forward strand (548bp). Preparing reverse complement...
399s  <-> Reversing metdata.
399s Done.
399s Seq NZ_GG705128.fna loaded. 548 bytes
399s Loading NZ_GG705128.gbk
399s Read 548bp (548 bytesp) in 0.000 seconds (2.6 MBp/s)
399s Done with forward strand (548bp). Preparing reverse complement...
399s  <-> Reversing metdata.
399s Done.
399s Seq NZ_GG705128.gbk loaded. 548 bytes
399s Sequence loading took: 0.001 seconds
399s Forward frequencies:  A:31.9343%  C:19.5255%  G:21.7153%  T:26.8248%
399s Global base frequencies:  A/T:58.7591%  C/G:41.2409%
399s Pat: 3 bases long with weight 2
399s    1 101 
399s Computing hash parameters...
399s Using 4 hashbits
399s  0%......... (T -0.106 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.092 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.079 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.067 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.056 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%......... (T -0.045 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%......... (T -0.033 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 91%........
399s Acceptable hash function found after 1000 cycles.
399s Best uses 2/2 bases and has 0 empties from 2 inputs.
399s Score: 0.96875 (cf. worst: -4.51562)
399s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
399s Total correlation penalty: 0
399s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
399s                                             10
399s                                             ==
399s w[ 0]>>29:                                 -.C
399s w[ 0]>>30:                                  A.-
399s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
399s Ecolist (optimistic): Expcted entries per list: 8
399s Ecolist (optimistic): Minimum chunks per list: 4
399s Would take minimum 256.000000 bytes to make perfect hash.
399s Hashing 2.14 KB of sequence requires: 
399s  ~ linear (in seq length) hashing cost of 3.48 KB
399s  ~ linear (in seq length) expected anchor cost of 51.38 KB
399s Initial hash table uses: 256 bytes (4 bits, 16 entries)
399s Expected memory usage (without anchors): 3.73 KB
399s Expected memory usage (with anchors): 55.10 KB
399s Hash parameters computed in 0.113 seconds
399s Creating storage structures: 16 entries in 256 bytes space.
399s Storage structures created in: 0.000 seconds
399s 
399s Hashing NZ_GG705128.fna forwards
399s  0%......... (T -0.003 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 90%........
399s Hashing NZ_GG705128.fna backwards
399s  0%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%......... (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 90%........
399s Hashing NZ_GG705128.gbk forwards
399s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 90%........
399s Hashing NZ_GG705128.gbk backwards
399s  0%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%......... (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 90%........
399s Initial hashing took: 0.005 seconds
399s Extracting anchors from hash-space.
399s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s  6%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 31%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 93%.
399s Anchor extraction completed in: 0.001 seconds
399s Total anchors: 0
399s Anchor extraction + merge time: 0.001 seconds
399s Total processing time: 0.121 seconds
399s Writing anchors...
399s Total seeds used in anchors: 16
399s Hash performance:
399s  Keys used: 16 out of 16 possible (100.00%).
399s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
399s  Average pigeons per pigeon hole: 1
399s Writing 16 repeats...Output writing finished in: 0.000 seconds
399s Total time: 0.121 seconds
399s Murasaki finished!
399s PASSED MURASAKI
399s 
399s Testing Genepare on NZ_GG705128.fna
399s 18446744073709551165
399s PASSED GENEPARSE
399s 
399s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
399s Testing mbfa on NZ_GG705128.fna
399s PASSED mbfa
399s 
399s Test Murasaki on NZ_GG705129.fna
399s Verbosity level is: 0
399s Writing to: output/test
399s Pattern is: 101
399s Max usable hash bits: 27
399s Hit filter is: 0
399s Hash table type is: EcoHash
399s Hashing every: 1 base
399s Histogram detail is: 0
399s Hashing function is: 3
399s Collision profiling is: disabled
399s Repeats are: unmasked
399s Mergefilter is at: 100
399s Random seed: 1711203605 (automatic)
399s Bitscore output: on
399s Leave status records: no
399s Join neighbors is: off
399s Target memory is: 1.30 GB
399s Retain members is: true
399s Store repeatmap? yes
399s Reverse complement data is generated on the fly
399s Rifts allowed: 0
399s Fuzzy Extension: yes
399s Score by minimum pair: yes
399s Gapped anchors: no
399s Large sequence support is: enabled => seqpos is 8 bytes
399s Murasaki version 1.68.6 (LARGESEQ)
399s Loading NZ_GG705129.fna
399s Read 536bp (536 bytesp) in 0.000 seconds (2.1 MBp/s)
399s Done with forward strand (536bp). Preparing reverse complement...
399s  <-> Reversing metdata.
399s Done.
399s Seq NZ_GG705129.fna loaded. 536 bytes
399s Loading NZ_GG705129.gbk
399s Read 536bp (536 bytesp) in 0.000 seconds (3.2 MBp/s)
399s Done with forward strand (536bp). Preparing reverse complement...
399s  <-> Reversing metdata.
399s Done.
399s Seq NZ_GG705129.gbk loaded. 536 bytes
399s Sequence loading took: 0.000 seconds
399s Forward frequencies:  A:36.3806%  C:13.2463%  G:17.9104%  T:32.4627%
399s Global base frequencies:  A/T:68.8433%  C/G:31.1567%
399s Pat: 3 bases long with weight 2
399s    1 101 
399s Computing hash parameters...
399s Using 4 hashbits
399s  0%......... (T -0.100 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.093 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.088 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.073 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.061 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%......... (T -0.048 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%......... (T -0.036 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%......... (T -0.023 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%......... (T -0.010 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 91%........
399s Acceptable hash function found after 1000 cycles.
399s Best uses 2/2 bases and has 0 empties from 2 inputs.
399s Score: 0.96875 (cf. worst: -4.51562)
399s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
399s Total correlation penalty: 0
399s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
399s                                             10
399s                                             ==
399s w[ 0]>>29:                                 -.C
399s w[ 0]>>30:                                  A.-
399s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
399s Ecolist (optimistic): Expcted entries per list: 8
399s Ecolist (optimistic): Minimum chunks per list: 4
399s Would take minimum 256.000000 bytes to make perfect hash.
399s Hashing 2.09 KB of sequence requires: 
399s  ~ linear (in seq length) hashing cost of 3.40 KB
399s  ~ linear (in seq length) expected anchor cost of 50.25 KB
399s Initial hash table uses: 256 bytes (4 bits, 16 entries)
399s Expected memory usage (without anchors): 3.65 KB
399s Expected memory usage (with anchors): 53.90 KB
399s Hash parameters computed in 0.115 seconds
399s Creating storage structures: 16 entries in 256 bytes space.
399s Storage structures created in: 0.000 seconds
399s 
399s Hashing NZ_GG705129.fna forwards
399s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 91%.......
399s Hashing NZ_GG705129.fna backwards
399s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 91%.......
399s Hashing NZ_GG705129.gbk forwards
399s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 91%.......
399s Hashing NZ_GG705129.gbk backwards
399s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 91%.......
399s Initial hashing took: 0.002 seconds
399s Extracting anchors from hash-space.
399s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s  6%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 18%. (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 31%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 93%.
399s Anchor extraction completed in: 0.001 seconds
399s Total anchors: 0
399s Anchor extraction + merge time: 0.001 seconds
399s Total processing time: 0.119 seconds
399s Writing anchors...
399s Total seeds used in anchors: 16
399s Hash performance:
399s  Keys used: 16 out of 16 possible (100.00%).
399s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
399s  Average pigeons per pigeon hole: 1
399s Writing 16 repeats...Output writing finished in: 0.001 seconds
399s Total time: 0.120 seconds
399s Murasaki finished!
399s PASSED MURASAKI
399s 
399s Testing Genepare on NZ_GG705129.fna
399s 18446744073709551153
399s PASSED GENEPARSE
399s 
399s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
399s Testing mbfa on NZ_GG705129.fna
399s PASSED mbfa
399s 
399s Test Murasaki on NZ_GG705130.fna
399s Verbosity level is: 0
399s Writing to: output/test
399s Pattern is: 101
399s Max usable hash bits: 27
399s Hit filter is: 0
399s Hash table type is: EcoHash
399s Hashing every: 1 base
399s Histogram detail is: 0
399s Hashing function is: 3
399s Collision profiling is: disabled
399s Repeats are: unmasked
399s Mergefilter is at: 100
399s Random seed: 1711203605 (automatic)
399s Bitscore output: on
399s Leave status records: no
399s Join neighbors is: off
399s Target memory is: 1.30 GB
399s Retain members is: true
399s Store repeatmap? yes
399s Reverse complement data is generated on the fly
399s Rifts allowed: 0
399s Fuzzy Extension: yes
399s Score by minimum pair: yes
399s Gapped anchors: no
399s Large sequence support is: enabled => seqpos is 8 bytes
399s Murasaki version 1.68.6 (LARGESEQ)
399s Loading NZ_GG705130.fna
399s Read 512bp (512 bytesp) in 0.000 seconds (1.8 MBp/s)
399s Done with forward strand (512bp). Preparing reverse complement...
399s  <-> Reversing metdata.
399s Done.
399s Seq NZ_GG705130.fna loaded. 512 bytes
399s Loading NZ_GG705130.gbk
399s Read 512bp (512 bytesp) in 0.000 seconds (2.9 MBp/s)
399s Done with forward strand (512bp). Preparing reverse complement...
399s  <-> Reversing metdata.
399s Done.
399s Seq NZ_GG705130.gbk loaded. 512 bytes
399s Sequence loading took: 0.001 seconds
399s Forward frequencies:  A:33.5938%  C:14.4531%  G:19.1406%  T:32.8125%
399s Global base frequencies:  A/T:66.4062%  C/G:33.5938%
399s Pat: 3 bases long with weight 2
399s    1 101 
399s Computing hash parameters...
399s Using 4 hashbits
399s  0%......... (T -0.101 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%......... (T -0.095 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%......... (T -0.102 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%......... (T -0.095 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%......... (T -0.082 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 50%......... (T -0.064 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 60%......... (T -0.046 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 70%......... (T -0.030 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 80%......... (T -0.013 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 91%........
399s Acceptable hash function found after 1000 cycles.
399s Best uses 2/2 bases and has 0 empties from 2 inputs.
399s Score: 0.96875 (cf. worst: -4.51562)
399s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
399s Total correlation penalty: 0
399s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
399s                                             10
399s                                             ==
399s w[ 0]>>29:                                 -.C
399s w[ 0]>>30:                                  A.-
399s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
399s Ecolist (optimistic): Expcted entries per list: 8
399s Ecolist (optimistic): Minimum chunks per list: 4
399s Would take minimum 256.000000 bytes to make perfect hash.
399s Hashing 2.00 KB of sequence requires: 
399s  ~ linear (in seq length) hashing cost of 3.25 KB
399s  ~ linear (in seq length) expected anchor cost of 48.00 KB
399s Initial hash table uses: 256 bytes (4 bits, 16 entries)
399s Expected memory usage (without anchors): 3.50 KB
399s Expected memory usage (with anchors): 51.50 KB
399s Hash parameters computed in 0.140 seconds
399s Creating storage structures: 16 entries in 256 bytes space.
399s Storage structures created in: 0.000 seconds
399s 
399s Hashing NZ_GG705130.fna forwards
399s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 51%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 61%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 71%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 91%......
399s Hashing NZ_GG705130.fna backwards
399s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 51%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 61%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 71%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 91%......
399s Hashing NZ_GG705130.gbk forwards
399s  0%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%........ (T -0.002 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 51%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 61%........ (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 71%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 91%......
399s Hashing NZ_GG705130.gbk backwards
399s  0%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 10%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 20%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 30%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 40%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 51%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 61%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 71%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 81%........ (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 91%......
399s Initial hashing took: 0.006 seconds
399s Extracting anchors from hash-space.
399s  (T -0.001 seconds) ETA: Sat Mar 23 14:20:05 2024
399s  6%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 18%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 31%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 43%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 56%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 68%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 81%. (T -0.000 seconds) ETA: Sat Mar 23 14:20:05 2024
399s 93%.
399s Anchor extraction completed in: 0.001 seconds
399s Total anchors: 0
399s Anchor extraction + merge time: 0.001 seconds
399s Total processing time: 0.148 seconds
399s Writing anchors...
399s Total seeds used in anchors: 16
399s Hash performance:
399s  Keys used: 16 out of 16 possible (100.00%).
399s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
399s  Average pigeons per pigeon hole: 1
399s Writing 16 repeats...Output writing finished in: 0.001 seconds
399s Total time: 0.148 seconds
399s Murasaki finished!
399s PASSED MURASAKI
399s 
399s Testing Genepare on NZ_GG705130.fna
399s 18446744073709551129
399s PASSED GENEPARSE
399s 
399s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
399s Testing mbfa on NZ_GG705130.fna
399s PASSED mbfa
399s 
399s PASS!
400s autopkgtest [14:20:06]: test run-unit-test: -----------------------]
400s run-unit-test        PASS
400s autopkgtest [14:20:06]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
400s autopkgtest [14:20:06]: @@@@@@@@@@@@@@@@@@@@ summary
400s run-unit-test        PASS
414s Creating nova instance adt-noble-s390x-murasaki-20240323-141326-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240323.img (UUID 15bd59e1-c29b-45d7-aba1-73ff15182fb5)...