0s autopkgtest [08:26:39]: starting date and time: 2024-03-21 08:26:39+0000 0s autopkgtest [08:26:39]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [08:26:39]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kvcj6okm/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:gnuplot,src:at-spi2-core,src:glib2.0,src:gtk+3.0,src:libpng1.6,src:qtbase-opensource-src,src:wp2latex,src:wxwidgets3.2 --apt-upgrade murasaki --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=gnuplot/6.0.0+dfsg1-1ubuntu2 at-spi2-core/2.51.90-3 glib2.0/2.79.3-3ubuntu5 gtk+3.0/3.24.41-1.1ubuntu1 libpng1.6/1.6.43-3 qtbase-opensource-src/5.15.12+dfsg-3ubuntu5 wp2latex/4.4~ds-1build1 wxwidgets3.2/3.2.4+dfsg-3.1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-s390x-8.secgroup --name adt-noble-s390x-murasaki-20240321-082639-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 122s autopkgtest [08:28:41]: testbed dpkg architecture: s390x 122s autopkgtest [08:28:41]: testbed apt version: 2.7.12 122s autopkgtest [08:28:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 122s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 123s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 123s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 123s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [492 kB] 123s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3769 kB] 126s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [665 kB] 126s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 126s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 126s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 126s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3985 kB] 126s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 126s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [45.1 kB] 126s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 126s Fetched 9145 kB in 3s (3216 kB/s) 126s Reading package lists... 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Calculating upgrade... 132s The following packages will be REMOVED: 132s libglib2.0-0 132s The following NEW packages will be installed: 132s libglib2.0-0t64 xdg-user-dirs 132s The following packages will be upgraded: 132s debianutils gir1.2-glib-2.0 libglib2.0-data 132s 3 upgraded, 2 newly installed, 1 to remove and 0 not upgraded. 132s Need to get 1901 kB of archives. 132s After this operation, 160 kB of additional disk space will be used. 132s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x debianutils s390x 5.17 [90.1 kB] 132s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gir1.2-glib-2.0 s390x 2.79.3-3ubuntu5 [180 kB] 132s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libglib2.0-0t64 s390x 2.79.3-3ubuntu5 [1566 kB] 132s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 132s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x xdg-user-dirs s390x 0.18-1 [18.5 kB] 132s Fetched 1901 kB in 1s (2915 kB/s) 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51778 files and directories currently installed.) 132s Preparing to unpack .../debianutils_5.17_s390x.deb ... 132s Unpacking debianutils (5.17) over (5.16) ... 132s Setting up debianutils (5.17) ... 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51778 files and directories currently installed.) 132s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_s390x.deb ... 132s Unpacking gir1.2-glib-2.0:s390x (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 132s dpkg: libglib2.0-0:s390x: dependency problems, but removing anyway as you requested: 132s udisks2 depends on libglib2.0-0 (>= 2.77.0). 132s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 132s s390-tools depends on libglib2.0-0 (>= 2.77.0). 132s python3-gi depends on libglib2.0-0 (>= 2.77.0). 132s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 132s netplan.io depends on libglib2.0-0 (>= 2.70.0). 132s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 132s libxmlb2:s390x depends on libglib2.0-0 (>= 2.54.0). 132s libvolume-key1:s390x depends on libglib2.0-0 (>= 2.18.0). 132s libudisks2-0:s390x depends on libglib2.0-0 (>= 2.75.3). 132s libqrtr-glib0:s390x depends on libglib2.0-0 (>= 2.56). 132s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 132s libqmi-glib5:s390x depends on libglib2.0-0 (>= 2.54.0). 132s libpolkit-gobject-1-0:s390x depends on libglib2.0-0 (>= 2.38.0). 132s libpolkit-agent-1-0:s390x depends on libglib2.0-0 (>= 2.38.0). 132s libnetplan0:s390x depends on libglib2.0-0 (>= 2.75.3). 132s libmm-glib0:s390x depends on libglib2.0-0 (>= 2.62.0). 132s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 132s libmbim-glib4:s390x depends on libglib2.0-0 (>= 2.56). 132s libjson-glib-1.0-0:s390x depends on libglib2.0-0 (>= 2.75.3). 132s libjcat1:s390x depends on libglib2.0-0 (>= 2.75.3). 132s libgusb2:s390x depends on libglib2.0-0 (>= 2.75.3). 132s libgudev-1.0-0:s390x depends on libglib2.0-0 (>= 2.38.0). 132s libgirepository-1.0-1:s390x depends on libglib2.0-0 (>= 2.79.0). 132s libfwupd2:s390x depends on libglib2.0-0 (>= 2.79.0). 132s libblockdev3:s390x depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-utils3:s390x depends on libglib2.0-0 (>= 2.75.3). 132s libblockdev-swap3:s390x depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-part3:s390x depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-nvme3:s390x depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-mdraid3:s390x depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-loop3:s390x depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-fs3:s390x depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-crypto3:s390x depends on libglib2.0-0 (>= 2.42.2). 132s fwupd depends on libglib2.0-0 (>= 2.79.0). 132s bolt depends on libglib2.0-0 (>= 2.56.0). 132s 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51778 files and directories currently installed.) 132s Removing libglib2.0-0:s390x (2.79.2-1~ubuntu1) ... 132s Selecting previously unselected package libglib2.0-0t64:s390x. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51753 files and directories currently installed.) 133s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_s390x.deb ... 133s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:s390x.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 133s removed '/var/lib/dpkg/info/libglib2.0-0:s390x.postrm' 133s Unpacking libglib2.0-0t64:s390x (2.79.3-3ubuntu5) ... 133s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 133s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 133s Selecting previously unselected package xdg-user-dirs. 133s Preparing to unpack .../xdg-user-dirs_0.18-1_s390x.deb ... 133s Unpacking xdg-user-dirs (0.18-1) ... 133s Setting up xdg-user-dirs (0.18-1) ... 133s Setting up libglib2.0-0t64:s390x (2.79.3-3ubuntu5) ... 133s No schema files found: doing nothing. 133s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 133s Setting up gir1.2-glib-2.0:s390x (2.79.3-3ubuntu5) ... 133s Processing triggers for man-db (2.12.0-3) ... 135s Processing triggers for libc-bin (2.39-0ubuntu2) ... 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s Unknown architecture, assuming PC-style ttyS0 135s sh: Attempting to set up Debian/Ubuntu apt sources automatically 135s sh: Distribution appears to be Ubuntu 136s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s eatmydata is already the newest version (131-1). 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 142s dbus is already the newest version (1.14.10-4ubuntu1). 142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s rng-tools-debian is already the newest version (2.4). 142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s The following packages will be REMOVED: 142s cloud-init* python3-configobj* python3-debconf* 142s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 142s After this operation, 3252 kB disk space will be freed. 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51792 files and directories currently installed.) 142s Removing cloud-init (24.1.1-0ubuntu1) ... 142s Removing python3-configobj (5.0.8-3) ... 142s Removing python3-debconf (1.5.86) ... 142s Processing triggers for man-db (2.12.0-3) ... 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51403 files and directories currently installed.) 142s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 142s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 142s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 143s invoke-rc.d: policy-rc.d denied execution of try-restart. 143s Reading package lists... 145s Building dependency tree... 145s Reading state information... 145s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 145s linux-generic is already the newest version (6.8.0-11.11+1). 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 145s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 147s Reading package lists... 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 148s Calculating upgrade... 148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 149s autopkgtest [08:29:08]: rebooting testbed after setup commands that affected boot 171s autopkgtest [08:29:30]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 175s autopkgtest [08:29:34]: @@@@@@@@@@@@@@@@@@@@ apt-source murasaki 179s Get:1 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (dsc) [2787 B] 179s Get:2 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (tar) [3944 kB] 179s Get:3 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (tar) [308 kB] 179s Get:4 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (diff) [11.4 kB] 180s gpgv: Signature made Tue Dec 19 15:02:21 2023 UTC 180s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 180s gpgv: Can't check signature: No public key 180s dpkg-source: warning: cannot verify inline signature for ./murasaki_1.68.6-13build4.dsc: no acceptable signature found 180s autopkgtest [08:29:39]: testing package murasaki version 1.68.6-13build4 180s autopkgtest [08:29:39]: build not needed 203s autopkgtest [08:30:02]: test run-unit-test: preparing testbed 208s Reading package lists... 208s Building dependency tree... 208s Reading state information... 208s Starting pkgProblemResolver with broken count: 0 208s Starting 2 pkgProblemResolver with broken count: 0 208s Done 209s The following additional packages will be installed: 209s adwaita-icon-theme aglfn at-spi2-common autoconf automake autotools-dev 209s cpp-13-s390x-linux-gnu dconf-gsettings-backend dconf-service fontconfig 209s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-13 gcc-13-base 209s gcc-13-s390x-linux-gnu gfortran-13 gfortran-13-s390x-linux-gnu gnuplot 209s gnuplot-data gnuplot-qt gtk-update-icon-cache hicolor-icon-theme 209s humanity-icon-theme icu-devtools imagemagick imagemagick-6-common 209s imagemagick-6.q16 libasan8 libatk-bridge2.0-0 libatk1.0-0 libatomic1 209s libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 209s libbio-perl-perl libblas3 libboost-atomic1.83-dev libboost-atomic1.83.0 209s libboost-filesystem-dev libboost-filesystem1.83-dev 209s libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev 209s libboost-iostreams1.83.0 libboost-regex-dev libboost-regex1.83-dev 209s libboost-regex1.83.0 libboost-system1.83-dev libboost-system1.83.0 209s libboost1.83-dev libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcc1-0 209s libcolord2 libcrypt-dev libcrypto++-dev libcrypto++8t64 libcups2 209s libdata-stag-perl libdatrie1 libdav1d7 libdconf1 libde265-0 libdeflate0 209s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 209s libegl-mesa0 libegl1 libepoxy0 libevent-2.1-7 libevent-dev 209s libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 209s libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 209s libgcc-13-dev libgd3 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 209s libgfortran-13-dev libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa 209s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk-3-0 209s libgtk-3-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 209s libheif1 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libice6 209s libicu-dev libinput-bin libinput10 libio-string-perl libisl23 libitm1 209s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 209s liblcms2-2 libllvm17 liblqr-1-0 libltdl-dev libltdl7 liblua5.4-0 209s libmagickcore-6.q16-7 libmagickwand-6.q16-7 libmd4c0 libmpc3 libmtdev1 209s libmunge2 libnl-3-dev libnl-route-3-dev libnotify4 libnsl-dev libnuma-dev 209s libopenjp2-7 libopenmpi-dev libopenmpi3 libpango-1.0-0 libpangocairo-1.0-0 209s libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre2-16-0 209s libpcre2-32-0 libpixman-1-0 libpmix-dev libpmix2 libpstreams-dev 209s libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5 209s libqt5svg5 libqt5widgets5 libraw23 librdmacm1t64 libsharpyuv0 libsm6 209s libstdc++-13-dev libtcl8.6 libterm-readkey-perl libtext-wrapper-perl 209s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libvulkan1 209s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 209s libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 209s libwxbase3.2-1 libwxgtk3.2-1 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 209s libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 209s libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 209s libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 209s libxcb-xkb1 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 209s libxinerama1 libxkbcommon-x11-0 libxnvctrl0 libxpm4 libxrandr2 libxrender1 209s libxshmfence1 libxss1 libxt6 libxtst6 libxxf86vm1 linux-libc-dev m4 murasaki 209s murasaki-common murasaki-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common 209s r-base-core r-cran-bitops r-cran-catools r-cran-gdata r-cran-gplots 209s r-cran-gtools r-cran-kernsmooth r-cran-mass r-cran-rocr rpcsvc-proto 209s ubuntu-mono unzip x11-common xdg-utils zip zlib1g-dev 209s Suggested packages: 209s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-13-locales 209s cpp-13-doc gcc-13-multilib gcc-13-doc gfortran-13-multilib gfortran-13-doc 209s libcoarrays-dev gnuplot-doc imagemagick-6-doc autotrace cups-bsd | lpr 209s | lprng enscript ffmpeg gimp grads graphviz hp2xx html2ps libwmf-bin mplayer 209s povray radiance sane-utils texlive-base-bin transfig libraw-bin bioperl 209s libxml-sax-expatxs-perl libboost1.83-doc libboost-chrono1.83-dev 209s libboost-container1.83-dev libboost-context1.83-dev 209s libboost-contract1.83-dev libboost-coroutine1.83-dev 209s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 209s libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-json1.83-dev 209s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 209s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 209s libboost-numpy1.83-dev libboost-program-options1.83-dev 209s libboost-python1.83-dev libboost-random1.83-dev 209s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 209s libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev 209s libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev 209s libboost1.83-tools-dev libmpfrc++-dev libntl-dev glibc-doc manpages-dev 209s colord cups-common libfftw3-bin libfftw3-dev libgd-tools gvfs 209s libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc 209s libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e 209s libheif-plugin-svtenc icu-doc libjs-jquery-ui-docs liblcms2-utils 209s libtool-doc libmagickcore-6.q16-7-extra notification-daemon openmpi-doc 209s qgnomeplatform-qt5 qt5-image-formats-plugins libstdc++-13-doc tcl8.6 tk8.6 209s libwacom-bin m4-doc opencl-icd gfortran | fortran-compiler elpa-ess 209s r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rpart r-cran-knitr 209s r-cran-rmarkdown 209s Recommended packages: 209s librsvg2-common libmagickcore-6.q16-7-extra ghostscript netpbm at-spi2-core 209s bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl 209s libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl 209s libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl 209s libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl 209s libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl 209s libset-scalar-perl libsoap-lite-perl libsort-naturally-perl 209s libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl 209s libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl 209s libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl 209s libxml-writer-perl libxml-libxml-perl libwww-perl manpages manpages-dev 209s libc-devtools perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl 209s libxml-libxslt-perl libmldbm-perl libxml-perl libgdk-pixbuf2.0-bin 209s libgl1-amber-dri libgtk-3-bin libheif-plugin-aomenc libheif-plugin-x265 209s javascript-common libtool fonts-urw-base35 libcoarrays-openmpi-dev 209s qttranslations5-l10n qt5-gtk-platformtheme qtwayland5 mesa-vulkan-drivers 209s | vulkan-icd r-recommended r-base-dev r-doc-html r-cran-testthat 209s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 209s x11-xserver-utils 209s The following NEW packages will be installed: 209s adwaita-icon-theme aglfn at-spi2-common autoconf automake autopkgtest-satdep 209s autotools-dev cpp-13-s390x-linux-gnu dconf-gsettings-backend dconf-service 209s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-13 209s gcc-13-base gcc-13-s390x-linux-gnu gfortran-13 gfortran-13-s390x-linux-gnu 209s gnuplot gnuplot-data gnuplot-qt gtk-update-icon-cache hicolor-icon-theme 209s humanity-icon-theme icu-devtools imagemagick imagemagick-6-common 209s imagemagick-6.q16 libasan8 libatk-bridge2.0-0 libatk1.0-0 libatomic1 209s libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 209s libbio-perl-perl libblas3 libboost-atomic1.83-dev libboost-atomic1.83.0 209s libboost-filesystem-dev libboost-filesystem1.83-dev 209s libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev 209s libboost-iostreams1.83.0 libboost-regex-dev libboost-regex1.83-dev 209s libboost-regex1.83.0 libboost-system1.83-dev libboost-system1.83.0 209s libboost1.83-dev libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcc1-0 209s libcolord2 libcrypt-dev libcrypto++-dev libcrypto++8t64 libcups2 209s libdata-stag-perl libdatrie1 libdav1d7 libdconf1 libde265-0 libdeflate0 209s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 209s libegl-mesa0 libegl1 libepoxy0 libevent-2.1-7 libevent-dev 209s libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 209s libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 209s libgcc-13-dev libgd3 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 209s libgfortran-13-dev libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa 209s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk-3-0 209s libgtk-3-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 209s libheif1 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libice6 209s libicu-dev libinput-bin libinput10 libio-string-perl libisl23 libitm1 209s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 209s liblcms2-2 libllvm17 liblqr-1-0 libltdl-dev libltdl7 liblua5.4-0 209s libmagickcore-6.q16-7 libmagickwand-6.q16-7 libmd4c0 libmpc3 libmtdev1 209s libmunge2 libnl-3-dev libnl-route-3-dev libnotify4 libnsl-dev libnuma-dev 209s libopenjp2-7 libopenmpi-dev libopenmpi3 libpango-1.0-0 libpangocairo-1.0-0 209s libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre2-16-0 209s libpcre2-32-0 libpixman-1-0 libpmix-dev libpmix2 libpstreams-dev 209s libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5 209s libqt5svg5 libqt5widgets5 libraw23 librdmacm1t64 libsharpyuv0 libsm6 209s libstdc++-13-dev libtcl8.6 libterm-readkey-perl libtext-wrapper-perl 209s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libvulkan1 209s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 209s libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 209s libwxbase3.2-1 libwxgtk3.2-1 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 209s libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 209s libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 209s libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 209s libxcb-xkb1 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 209s libxinerama1 libxkbcommon-x11-0 libxnvctrl0 libxpm4 libxrandr2 libxrender1 209s libxshmfence1 libxss1 libxt6 libxtst6 libxxf86vm1 linux-libc-dev m4 murasaki 209s murasaki-common murasaki-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common 209s r-base-core r-cran-bitops r-cran-catools r-cran-gdata r-cran-gplots 209s r-cran-gtools r-cran-kernsmooth r-cran-mass r-cran-rocr rpcsvc-proto 209s ubuntu-mono unzip x11-common xdg-utils zip zlib1g-dev 209s 0 upgraded, 248 newly installed, 0 to remove and 0 not upgraded. 209s Need to get 220 MB/220 MB of archives. 209s After this operation, 927 MB of additional disk space will be used. 209s Get:1 /tmp/autopkgtest.UNP7Xu/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [792 B] 209s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 210s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-double3 s390x 3.3.10-1ubuntu1 [465 kB] 210s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 210s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 210s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 210s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 210s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 210s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 210s Get:10 http://ftpmaster.internal/ubuntu noble/universe s390x libdav1d7 s390x 1.4.0-1 [316 kB] 210s Get:11 http://ftpmaster.internal/ubuntu noble/universe s390x libheif-plugin-dav1d s390x 1.17.6-1ubuntu1 [11.1 kB] 210s Get:12 http://ftpmaster.internal/ubuntu noble/universe s390x libde265-0 s390x 1.0.15-1 [201 kB] 210s Get:13 http://ftpmaster.internal/ubuntu noble/universe s390x libheif-plugin-libde265 s390x 1.17.6-1ubuntu1 [9250 B] 210s Get:14 http://ftpmaster.internal/ubuntu noble/universe s390x libheif1 s390x 1.17.6-1ubuntu1 [354 kB] 210s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 210s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 210s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 210s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB] 210s Get:19 http://ftpmaster.internal/ubuntu noble/universe s390x liblqr-1-0 s390x 0.4.2-2.1 [26.8 kB] 210s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libltdl7 s390x 2.4.7-7 [41.6 kB] 210s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libopenjp2-7 s390x 2.5.0-2 [169 kB] 210s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libraw23 s390x 0.21.2-2 [417 kB] 210s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 210s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 210s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 210s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libwebpdemux2 s390x 1.3.2-0.4 [12.4 kB] 210s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libwebpmux3 s390x 1.3.2-0.4 [25.4 kB] 210s Get:28 http://ftpmaster.internal/ubuntu noble/universe s390x imagemagick-6-common all 8:6.9.12.98+dfsg1-5 [69.2 kB] 210s Get:29 http://ftpmaster.internal/ubuntu noble/universe s390x libmagickcore-6.q16-7 s390x 8:6.9.12.98+dfsg1-5 [1891 kB] 210s Get:30 http://ftpmaster.internal/ubuntu noble/universe s390x libmagickwand-6.q16-7 s390x 8:6.9.12.98+dfsg1-5 [344 kB] 210s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-base s390x 13.2.0-17ubuntu2 [47.4 kB] 210s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 210s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libgdk-pixbuf-2.0-0 s390x 2.42.10+dfsg-3 [152 kB] 210s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x gtk-update-icon-cache s390x 3.24.40-2ubuntu1 [51.0 kB] 210s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x hicolor-icon-theme all 0.17-2 [9976 B] 210s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x humanity-icon-theme all 0.6.16 [1282 kB] 210s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-mono all 24.04-0ubuntu1 [151 kB] 210s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x adwaita-icon-theme all 46~rc-1 [723 kB] 210s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x at-spi2-common all 2.50.0-1 [7864 B] 210s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x m4 s390x 1.4.19-4 [255 kB] 210s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x autoconf all 2.71-3 [339 kB] 210s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x autotools-dev all 20220109.1 [44.9 kB] 210s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB] 210s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 210s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 210s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [9929 kB] 211s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libdconf1 s390x 0.40.0-4 [38.9 kB] 211s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x dconf-service s390x 0.40.0-4 [27.0 kB] 211s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x dconf-gsettings-backend s390x 0.40.0-4 [21.6 kB] 211s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 211s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 211s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 211s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 211s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 218s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 218s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-17ubuntu2 [1003 kB] 218s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [19.1 MB] 218s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-17ubuntu2 [467 kB] 218s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 218s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-17ubuntu2 [623 kB] 218s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 218s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 218s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 218s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 218s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 218s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 218s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 218s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-17ubuntu2 [10.4 MB] 218s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-17ubuntu2 [10.3 kB] 218s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB] 218s Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x gnuplot-data all 5.4.4+dfsg1-2build1 [74.6 kB] 218s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 218s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 218s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 218s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 218s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 218s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 218s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libgd3 s390x 2.3.3-9ubuntu1 [127 kB] 218s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 218s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 218s Get:81 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 218s Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 218s Get:83 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 218s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 218s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 218s Get:86 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 218s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 218s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x libdouble-conversion3 s390x 3.3.0-1 [39.6 kB] 218s Get:89 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 218s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5core5a s390x 5.15.12+dfsg-3ubuntu1 [2258 kB] 218s Get:91 http://ftpmaster.internal/ubuntu noble/main s390x libglvnd0 s390x 1.7.0-1 [106 kB] 218s Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-server0 s390x 1.22.0-2.1 [34.9 kB] 218s Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-randr0 s390x 1.15-1 [19.0 kB] 218s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libgbm1 s390x 24.0.1-1ubuntu1 [44.0 kB] 218s Get:95 http://ftpmaster.internal/ubuntu noble/main s390x libglapi-mesa s390x 24.0.1-1ubuntu1 [68.7 kB] 218s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-client0 s390x 1.22.0-2.1 [26.1 kB] 218s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libx11-xcb1 s390x 2:1.8.7-1 [7778 B] 218s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri2-0 s390x 1.15-1 [7426 B] 218s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri3-0 s390x 1.15-1 [7270 B] 218s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-present0 s390x 1.15-1 [5752 B] 218s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-sync1 s390x 1.15-1 [9392 B] 218s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xfixes0 s390x 1.15-1 [10.5 kB] 218s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libxshmfence1 s390x 1.3-1build4 [5334 B] 218s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libegl-mesa0 s390x 24.0.1-1ubuntu1 [123 kB] 218s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libegl1 s390x 1.7.0-1 [30.9 kB] 218s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-glx0 s390x 1.15-1 [25.8 kB] 218s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libxfixes3 s390x 1:6.0.0-2 [10.6 kB] 218s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libxxf86vm1 s390x 1:1.1.4-1build3 [9900 B] 218s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libvulkan1 s390x 1.3.275.0-1 [155 kB] 218s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-amdgpu1 s390x 2.4.120-2 [21.1 kB] 218s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-nouveau2 s390x 2.4.120-2 [18.5 kB] 218s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-radeon1 s390x 2.4.120-2 [22.7 kB] 218s Get:113 http://ftpmaster.internal/ubuntu noble/main s390x libllvm17 s390x 1:17.0.6-5build1 [31.2 MB] 218s Get:114 http://ftpmaster.internal/ubuntu noble/main s390x libgl1-mesa-dri s390x 24.0.1-1ubuntu1 [7184 kB] 218s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libglx-mesa0 s390x 24.0.1-1ubuntu1 [182 kB] 218s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libglx0 s390x 1.7.0-1 [31.4 kB] 218s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libgl1 s390x 1.7.0-1 [137 kB] 218s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 218s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 218s Get:120 http://ftpmaster.internal/ubuntu noble/main s390x libmtdev1 s390x 1.1.6-1build4 [14.6 kB] 218s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libwacom-common all 2.10.0-1 [63.3 kB] 218s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libwacom9 s390x 2.10.0-1 [24.2 kB] 218s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libinput-bin s390x 1.25.0-1 [22.0 kB] 218s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libinput10 s390x 1.25.0-1 [136 kB] 218s Get:125 http://ftpmaster.internal/ubuntu noble/universe s390x libmd4c0 s390x 0.4.8-1 [43.6 kB] 218s Get:126 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5dbus5 s390x 5.15.12+dfsg-3ubuntu1 [244 kB] 218s Get:127 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5network5 s390x 5.15.12+dfsg-3ubuntu1 [798 kB] 218s Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 218s Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-icccm4 s390x 0.4.1-1.1build2 [11.5 kB] 218s Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-util1 s390x 0.4.0-1build2 [11.2 kB] 218s Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-image0 s390x 0.4.0-2 [11.8 kB] 218s Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-keysyms1 s390x 0.4.0-1build3 [8780 B] 218s Get:133 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render-util0 s390x 0.3.9-1build3 [10.1 kB] 218s Get:134 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shape0 s390x 1.15-1 [6146 B] 218s Get:135 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xinerama0 s390x 1.15-1 [5382 B] 218s Get:136 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xinput0 s390x 1.15-1 [34.6 kB] 218s Get:137 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xkb1 s390x 1.15-1 [32.3 kB] 218s Get:138 http://ftpmaster.internal/ubuntu noble/main s390x libxkbcommon-x11-0 s390x 1.6.0-1 [14.8 kB] 218s Get:139 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5gui5 s390x 5.15.12+dfsg-3ubuntu1 [4203 kB] 218s Get:140 http://ftpmaster.internal/ubuntu noble/main s390x libavahi-common-data s390x 0.8-13ubuntu2 [29.5 kB] 218s Get:141 http://ftpmaster.internal/ubuntu noble/main s390x libavahi-common3 s390x 0.8-13ubuntu2 [23.8 kB] 218s Get:142 http://ftpmaster.internal/ubuntu noble/main s390x libavahi-client3 s390x 0.8-13ubuntu2 [26.7 kB] 218s Get:143 http://ftpmaster.internal/ubuntu noble/main s390x libcups2 s390x 2.4.6-0ubuntu3 [277 kB] 218s Get:144 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5widgets5 s390x 5.15.12+dfsg-3ubuntu1 [2753 kB] 218s Get:145 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5printsupport5 s390x 5.15.12+dfsg-3ubuntu1 [220 kB] 218s Get:146 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5svg5 s390x 5.15.12-1 [192 kB] 218s Get:147 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 218s Get:148 http://ftpmaster.internal/ubuntu noble/universe s390x libwxbase3.2-1 s390x 3.2.4+dfsg-3 [925 kB] 218s Get:149 http://ftpmaster.internal/ubuntu noble/main s390x libatk1.0-0 s390x 2.50.0-1 [54.4 kB] 218s Get:150 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 218s Get:151 http://ftpmaster.internal/ubuntu noble/main s390x libatspi2.0-0 s390x 2.50.0-1 [77.9 kB] 218s Get:152 http://ftpmaster.internal/ubuntu noble/main s390x libatk-bridge2.0-0 s390x 2.50.0-1 [65.3 kB] 218s Get:153 http://ftpmaster.internal/ubuntu noble/main s390x libcairo-gobject2 s390x 1.18.0-1 [126 kB] 218s Get:154 http://ftpmaster.internal/ubuntu noble/main s390x libcolord2 s390x 1.4.7-1 [151 kB] 218s Get:155 http://ftpmaster.internal/ubuntu noble/main s390x libepoxy0 s390x 1.5.10-1 [232 kB] 218s Get:156 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-cursor0 s390x 1.22.0-2.1 [11.1 kB] 218s Get:157 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-egl1 s390x 1.22.0-2.1 [5452 B] 218s Get:158 http://ftpmaster.internal/ubuntu noble/main s390x libxcomposite1 s390x 1:0.4.5-1build2 [6952 B] 218s Get:159 http://ftpmaster.internal/ubuntu noble/main s390x libxcursor1 s390x 1:1.2.1-1 [22.2 kB] 218s Get:160 http://ftpmaster.internal/ubuntu noble/main s390x libxdamage1 s390x 1:1.1.6-1 [5810 B] 218s Get:161 http://ftpmaster.internal/ubuntu noble/main s390x libxinerama1 s390x 2:1.1.4-3 [7110 B] 218s Get:162 http://ftpmaster.internal/ubuntu noble/main s390x libxrandr2 s390x 2:1.5.2-2 [19.5 kB] 218s Get:163 http://ftpmaster.internal/ubuntu noble/main s390x libgtk-3-common all 3.24.40-2ubuntu1 [1200 kB] 218s Get:164 http://ftpmaster.internal/ubuntu noble/main s390x libgtk-3-0 s390x 3.24.40-2ubuntu1 [2952 kB] 218s Get:165 http://ftpmaster.internal/ubuntu noble/main s390x libnotify4 s390x 0.8.3-1 [25.0 kB] 218s Get:166 http://ftpmaster.internal/ubuntu noble/main s390x libxtst6 s390x 2:1.2.3-1.1 [13.4 kB] 218s Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x libwxgtk3.2-1 s390x 3.2.4+dfsg-3 [4739 kB] 218s Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x gnuplot-qt s390x 5.4.4+dfsg1-2build1 [1099 kB] 218s Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x gnuplot all 5.4.4+dfsg1-2build1 [3584 B] 218s Get:170 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] 218s Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x imagemagick-6.q16 s390x 8:6.9.12.98+dfsg1-5 [254 kB] 218s Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x imagemagick s390x 8:6.9.12.98+dfsg1-5 [14.2 kB] 218s Get:173 http://ftpmaster.internal/ubuntu noble/main s390x libio-string-perl all 1.08-4 [11.1 kB] 218s Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x libdata-stag-perl all 0.14-3 [372 kB] 218s Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x libbio-perl-perl all 1.7.8-1 [2580 kB] 218s Get:176 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 218s Get:177 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-17ubuntu2 [2430 kB] 218s Get:178 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] 218s Get:179 http://ftpmaster.internal/ubuntu noble/main s390x libboost-atomic1.83.0 s390x 1.83.0-2ubuntu1 [316 kB] 218s Get:180 http://ftpmaster.internal/ubuntu noble/main s390x libboost-atomic1.83-dev s390x 1.83.0-2ubuntu1 [312 kB] 218s Get:181 http://ftpmaster.internal/ubuntu noble/main s390x libboost-filesystem1.83.0 s390x 1.83.0-2ubuntu1 [372 kB] 218s Get:182 http://ftpmaster.internal/ubuntu noble/main s390x libboost-system1.83.0 s390x 1.83.0-2ubuntu1 [312 kB] 218s Get:183 http://ftpmaster.internal/ubuntu noble/main s390x libboost-system1.83-dev s390x 1.83.0-2ubuntu1 [308 kB] 218s Get:184 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-filesystem1.83-dev s390x 1.83.0-2ubuntu1 [400 kB] 218s Get:185 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-filesystem-dev s390x 1.83.0.1ubuntu2 [4096 B] 218s Get:186 http://ftpmaster.internal/ubuntu noble/main s390x libboost-regex1.83.0 s390x 1.83.0-2ubuntu1 [449 kB] 218s Get:187 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] 218s Get:188 http://ftpmaster.internal/ubuntu noble/main s390x libboost-regex1.83-dev s390x 1.83.0-2ubuntu1 [486 kB] 218s Get:189 http://ftpmaster.internal/ubuntu noble/main s390x libboost-iostreams1.83.0 s390x 1.83.0-2ubuntu1 [340 kB] 218s Get:190 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-iostreams1.83-dev s390x 1.83.0-2ubuntu1 [351 kB] 218s Get:191 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-iostreams-dev s390x 1.83.0.1ubuntu2 [4048 B] 218s Get:192 http://ftpmaster.internal/ubuntu noble/main s390x libboost-regex-dev s390x 1.83.0.1ubuntu2 [4324 B] 218s Get:193 http://ftpmaster.internal/ubuntu noble/universe s390x libcrypto++8t64 s390x 8.9.0-1.1 [1181 kB] 218s Get:194 http://ftpmaster.internal/ubuntu noble/universe s390x libcrypto++-dev s390x 8.9.0-1.1 [2051 kB] 218s Get:195 http://ftpmaster.internal/ubuntu noble/main s390x libevent-2.1-7 s390x 2.1.12-stable-9 [144 kB] 218s Get:196 http://ftpmaster.internal/ubuntu noble/main s390x libevent-extra-2.1-7 s390x 2.1.12-stable-9 [63.6 kB] 218s Get:197 http://ftpmaster.internal/ubuntu noble/main s390x libevent-pthreads-2.1-7 s390x 2.1.12-stable-9 [7692 B] 218s Get:198 http://ftpmaster.internal/ubuntu noble/main s390x libevent-openssl-2.1-7 s390x 2.1.12-stable-9 [15.0 kB] 218s Get:199 http://ftpmaster.internal/ubuntu noble/main s390x libevent-dev s390x 2.1.12-stable-9 [275 kB] 218s Get:200 http://ftpmaster.internal/ubuntu noble/main s390x librdmacm1t64 s390x 50.0-2 [74.1 kB] 218s Get:201 http://ftpmaster.internal/ubuntu noble/universe s390x libfabric1 s390x 1.17.0-3build1 [566 kB] 218s Get:202 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc15 s390x 2.10.0-1 [174 kB] 218s Get:203 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 218s Get:204 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 218s Get:205 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 218s Get:206 http://ftpmaster.internal/ubuntu noble/main s390x libltdl-dev s390x 2.4.7-7 [170 kB] 218s Get:207 http://ftpmaster.internal/ubuntu noble/main s390x libnl-3-dev s390x 3.7.0-0.3 [104 kB] 218s Get:208 http://ftpmaster.internal/ubuntu noble/main s390x libnl-route-3-dev s390x 3.7.0-0.3 [218 kB] 218s Get:209 http://ftpmaster.internal/ubuntu noble/universe s390x libmunge2 s390x 0.5.15-3ubuntu1 [17.3 kB] 218s Get:210 http://ftpmaster.internal/ubuntu noble/main s390x libpciaccess0 s390x 0.17-3 [18.5 kB] 218s Get:211 http://ftpmaster.internal/ubuntu noble/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu1 [11.7 kB] 218s Get:212 http://ftpmaster.internal/ubuntu noble/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1 [39.1 kB] 218s Get:213 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-plugins s390x 2.10.0-1 [16.1 kB] 218s Get:214 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix2 s390x 5.0.1-4 [722 kB] 218s Get:215 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi3 s390x 4.1.6-5ubuntu1 [3024 kB] 218s Get:216 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 218s Get:217 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 218s Get:218 http://ftpmaster.internal/ubuntu noble/main s390x libnuma-dev s390x 2.0.18-1 [38.9 kB] 218s Get:219 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-dev s390x 2.10.0-1 [270 kB] 218s Get:220 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 218s Get:221 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix-dev s390x 5.0.1-4 [4027 kB] 219s Get:222 http://ftpmaster.internal/ubuntu noble/universe s390x libpstreams-dev all 1.0.3-1 [115 kB] 219s Get:223 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 219s Get:224 http://ftpmaster.internal/ubuntu noble/main s390x libterm-readkey-perl s390x 2.38-2build2 [23.0 kB] 219s Get:225 http://ftpmaster.internal/ubuntu noble/universe s390x libtext-wrapper-perl all 1.05-4 [9820 B] 219s Get:226 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 219s Get:227 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 219s Get:228 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 219s Get:229 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 219s Get:230 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 219s Get:231 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 219s Get:232 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 219s Get:233 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 222s Get:234 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtools s390x 3.9.5-1 [340 kB] 222s Get:235 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-bitops s390x 1.0-7-1 [29.6 kB] 222s Get:236 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-catools s390x 1.18.2-1 [201 kB] 222s Get:237 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 222s Get:238 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-kernsmooth s390x 2.23-22-1 [93.0 kB] 222s Get:239 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gdata all 3.0.0-1 [483 kB] 222s Get:240 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gplots all 3.1.3.1-1 [589 kB] 222s Get:241 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rocr all 1.0-11-2build1 [446 kB] 222s Get:242 http://ftpmaster.internal/ubuntu noble/universe s390x murasaki-common all 1.68.6-13build4 [146 kB] 222s Get:243 http://ftpmaster.internal/ubuntu noble/universe s390x murasaki s390x 1.68.6-13build4 [971 kB] 222s Get:244 http://ftpmaster.internal/ubuntu noble/universe s390x murasaki-mpi s390x 1.68.6-13build4 [1201 kB] 222s Get:245 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-common all 4.1.6-5ubuntu1 [178 kB] 222s Get:246 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-bin s390x 4.1.6-5ubuntu1 [92.5 kB] 222s Get:247 http://ftpmaster.internal/ubuntu noble/main s390x libibverbs-dev s390x 50.0-2 [717 kB] 222s Get:248 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi-dev s390x 4.1.6-5ubuntu1 [1571 kB] 222s Preconfiguring packages ... 222s Fetched 220 MB in 12s (18.9 MB/s) 222s Selecting previously unselected package libgomp1:s390x. 222s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51346 files and directories currently installed.) 222s Preparing to unpack .../000-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 222s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package libfftw3-double3:s390x. 222s Preparing to unpack .../001-libfftw3-double3_3.3.10-1ubuntu1_s390x.deb ... 222s Unpacking libfftw3-double3:s390x (3.3.10-1ubuntu1) ... 223s Selecting previously unselected package libfreetype6:s390x. 223s Preparing to unpack .../002-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 223s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 223s Selecting previously unselected package fonts-dejavu-mono. 223s Preparing to unpack .../003-fonts-dejavu-mono_2.37-8_all.deb ... 223s Unpacking fonts-dejavu-mono (2.37-8) ... 223s Selecting previously unselected package fonts-dejavu-core. 223s Preparing to unpack .../004-fonts-dejavu-core_2.37-8_all.deb ... 223s Unpacking fonts-dejavu-core (2.37-8) ... 223s Selecting previously unselected package fontconfig-config. 223s Preparing to unpack .../005-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 223s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 223s Selecting previously unselected package libfontconfig1:s390x. 223s Preparing to unpack .../006-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 223s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 223s Selecting previously unselected package libsharpyuv0:s390x. 223s Preparing to unpack .../007-libsharpyuv0_1.3.2-0.4_s390x.deb ... 223s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 223s Selecting previously unselected package libdav1d7:s390x. 223s Preparing to unpack .../008-libdav1d7_1.4.0-1_s390x.deb ... 223s Unpacking libdav1d7:s390x (1.4.0-1) ... 223s Selecting previously unselected package libheif-plugin-dav1d:s390x. 223s Preparing to unpack .../009-libheif-plugin-dav1d_1.17.6-1ubuntu1_s390x.deb ... 223s Unpacking libheif-plugin-dav1d:s390x (1.17.6-1ubuntu1) ... 223s Selecting previously unselected package libde265-0:s390x. 223s Preparing to unpack .../010-libde265-0_1.0.15-1_s390x.deb ... 223s Unpacking libde265-0:s390x (1.0.15-1) ... 223s Selecting previously unselected package libheif-plugin-libde265:s390x. 223s Preparing to unpack .../011-libheif-plugin-libde265_1.17.6-1ubuntu1_s390x.deb ... 223s Unpacking libheif-plugin-libde265:s390x (1.17.6-1ubuntu1) ... 223s Selecting previously unselected package libheif1:s390x. 223s Preparing to unpack .../012-libheif1_1.17.6-1ubuntu1_s390x.deb ... 223s Unpacking libheif1:s390x (1.17.6-1ubuntu1) ... 223s Selecting previously unselected package libjbig0:s390x. 223s Preparing to unpack .../013-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 223s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 223s Selecting previously unselected package libjpeg-turbo8:s390x. 223s Preparing to unpack .../014-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 223s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 223s Selecting previously unselected package libjpeg8:s390x. 223s Preparing to unpack .../015-libjpeg8_8c-2ubuntu11_s390x.deb ... 223s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 223s Selecting previously unselected package liblcms2-2:s390x. 223s Preparing to unpack .../016-liblcms2-2_2.14-2_s390x.deb ... 223s Unpacking liblcms2-2:s390x (2.14-2) ... 223s Selecting previously unselected package liblqr-1-0:s390x. 223s Preparing to unpack .../017-liblqr-1-0_0.4.2-2.1_s390x.deb ... 223s Unpacking liblqr-1-0:s390x (0.4.2-2.1) ... 223s Selecting previously unselected package libltdl7:s390x. 223s Preparing to unpack .../018-libltdl7_2.4.7-7_s390x.deb ... 223s Unpacking libltdl7:s390x (2.4.7-7) ... 223s Selecting previously unselected package libopenjp2-7:s390x. 223s Preparing to unpack .../019-libopenjp2-7_2.5.0-2_s390x.deb ... 223s Unpacking libopenjp2-7:s390x (2.5.0-2) ... 223s Selecting previously unselected package libraw23:s390x. 223s Preparing to unpack .../020-libraw23_0.21.2-2_s390x.deb ... 223s Unpacking libraw23:s390x (0.21.2-2) ... 223s Selecting previously unselected package libdeflate0:s390x. 223s Preparing to unpack .../021-libdeflate0_1.19-1_s390x.deb ... 223s Unpacking libdeflate0:s390x (1.19-1) ... 223s Selecting previously unselected package libwebp7:s390x. 223s Preparing to unpack .../022-libwebp7_1.3.2-0.4_s390x.deb ... 223s Unpacking libwebp7:s390x (1.3.2-0.4) ... 223s Selecting previously unselected package libtiff6:s390x. 223s Preparing to unpack .../023-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 223s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 223s Selecting previously unselected package libwebpdemux2:s390x. 223s Preparing to unpack .../024-libwebpdemux2_1.3.2-0.4_s390x.deb ... 223s Unpacking libwebpdemux2:s390x (1.3.2-0.4) ... 223s Selecting previously unselected package libwebpmux3:s390x. 223s Preparing to unpack .../025-libwebpmux3_1.3.2-0.4_s390x.deb ... 223s Unpacking libwebpmux3:s390x (1.3.2-0.4) ... 223s Selecting previously unselected package imagemagick-6-common. 223s Preparing to unpack .../026-imagemagick-6-common_8%3a6.9.12.98+dfsg1-5_all.deb ... 223s Unpacking imagemagick-6-common (8:6.9.12.98+dfsg1-5) ... 223s Selecting previously unselected package libmagickcore-6.q16-7:s390x. 223s Preparing to unpack .../027-libmagickcore-6.q16-7_8%3a6.9.12.98+dfsg1-5_s390x.deb ... 223s Unpacking libmagickcore-6.q16-7:s390x (8:6.9.12.98+dfsg1-5) ... 223s Selecting previously unselected package libmagickwand-6.q16-7:s390x. 223s Preparing to unpack .../028-libmagickwand-6.q16-7_8%3a6.9.12.98+dfsg1-5_s390x.deb ... 223s Unpacking libmagickwand-6.q16-7:s390x (8:6.9.12.98+dfsg1-5) ... 223s Selecting previously unselected package gcc-13-base:s390x. 223s Preparing to unpack .../029-gcc-13-base_13.2.0-17ubuntu2_s390x.deb ... 223s Unpacking gcc-13-base:s390x (13.2.0-17ubuntu2) ... 223s Selecting previously unselected package libgdk-pixbuf2.0-common. 223s Preparing to unpack .../030-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 223s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 223s Selecting previously unselected package libgdk-pixbuf-2.0-0:s390x. 223s Preparing to unpack .../031-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_s390x.deb ... 223s Unpacking libgdk-pixbuf-2.0-0:s390x (2.42.10+dfsg-3) ... 224s Selecting previously unselected package gtk-update-icon-cache. 224s Preparing to unpack .../032-gtk-update-icon-cache_3.24.40-2ubuntu1_s390x.deb ... 224s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 224s Selecting previously unselected package hicolor-icon-theme. 224s Preparing to unpack .../033-hicolor-icon-theme_0.17-2_all.deb ... 224s Unpacking hicolor-icon-theme (0.17-2) ... 224s Selecting previously unselected package humanity-icon-theme. 224s Preparing to unpack .../034-humanity-icon-theme_0.6.16_all.deb ... 224s Unpacking humanity-icon-theme (0.6.16) ... 225s Selecting previously unselected package ubuntu-mono. 225s Preparing to unpack .../035-ubuntu-mono_24.04-0ubuntu1_all.deb ... 225s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 230s Selecting previously unselected package adwaita-icon-theme. 230s Preparing to unpack .../036-adwaita-icon-theme_46~rc-1_all.deb ... 230s Unpacking adwaita-icon-theme (46~rc-1) ... 230s Selecting previously unselected package at-spi2-common. 230s Preparing to unpack .../037-at-spi2-common_2.50.0-1_all.deb ... 230s Unpacking at-spi2-common (2.50.0-1) ... 230s Selecting previously unselected package m4. 230s Preparing to unpack .../038-m4_1.4.19-4_s390x.deb ... 230s Unpacking m4 (1.4.19-4) ... 230s Selecting previously unselected package autoconf. 230s Preparing to unpack .../039-autoconf_2.71-3_all.deb ... 230s Unpacking autoconf (2.71-3) ... 230s Selecting previously unselected package autotools-dev. 230s Preparing to unpack .../040-autotools-dev_20220109.1_all.deb ... 230s Unpacking autotools-dev (20220109.1) ... 230s Selecting previously unselected package automake. 230s Preparing to unpack .../041-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 230s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 230s Selecting previously unselected package libisl23:s390x. 230s Preparing to unpack .../042-libisl23_0.26-3_s390x.deb ... 230s Unpacking libisl23:s390x (0.26-3) ... 230s Selecting previously unselected package libmpc3:s390x. 230s Preparing to unpack .../043-libmpc3_1.3.1-1_s390x.deb ... 230s Unpacking libmpc3:s390x (1.3.1-1) ... 230s Selecting previously unselected package cpp-13-s390x-linux-gnu. 230s Preparing to unpack .../044-cpp-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 230s Unpacking cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 230s Selecting previously unselected package libdconf1:s390x. 230s Preparing to unpack .../045-libdconf1_0.40.0-4_s390x.deb ... 230s Unpacking libdconf1:s390x (0.40.0-4) ... 230s Selecting previously unselected package dconf-service. 230s Preparing to unpack .../046-dconf-service_0.40.0-4_s390x.deb ... 230s Unpacking dconf-service (0.40.0-4) ... 230s Selecting previously unselected package dconf-gsettings-backend:s390x. 230s Preparing to unpack .../047-dconf-gsettings-backend_0.40.0-4_s390x.deb ... 230s Unpacking dconf-gsettings-backend:s390x (0.40.0-4) ... 230s Selecting previously unselected package fontconfig. 230s Preparing to unpack .../048-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 230s Unpacking fontconfig (2.15.0-1ubuntu1) ... 230s Selecting previously unselected package libcc1-0:s390x. 230s Preparing to unpack .../049-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 230s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 230s Selecting previously unselected package libitm1:s390x. 230s Preparing to unpack .../050-libitm1_14-20240303-1ubuntu1_s390x.deb ... 230s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 230s Selecting previously unselected package libatomic1:s390x. 230s Preparing to unpack .../051-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 230s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 230s Selecting previously unselected package libasan8:s390x. 230s Preparing to unpack .../052-libasan8_14-20240303-1ubuntu1_s390x.deb ... 230s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 230s Selecting previously unselected package libubsan1:s390x. 230s Preparing to unpack .../053-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 230s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 230s Selecting previously unselected package libgcc-13-dev:s390x. 230s Preparing to unpack .../054-libgcc-13-dev_13.2.0-17ubuntu2_s390x.deb ... 230s Unpacking libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 230s Selecting previously unselected package gcc-13-s390x-linux-gnu. 230s Preparing to unpack .../055-gcc-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 230s Unpacking gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 230s Selecting previously unselected package gcc-13. 230s Preparing to unpack .../056-gcc-13_13.2.0-17ubuntu2_s390x.deb ... 230s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 230s Selecting previously unselected package libgfortran5:s390x. 230s Preparing to unpack .../057-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 230s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 230s Selecting previously unselected package libgfortran-13-dev:s390x. 230s Preparing to unpack .../058-libgfortran-13-dev_13.2.0-17ubuntu2_s390x.deb ... 230s Unpacking libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 230s Selecting previously unselected package libc-dev-bin. 230s Preparing to unpack .../059-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 230s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 230s Selecting previously unselected package linux-libc-dev:s390x. 230s Preparing to unpack .../060-linux-libc-dev_6.8.0-11.11_s390x.deb ... 230s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 230s Selecting previously unselected package libcrypt-dev:s390x. 230s Preparing to unpack .../061-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 230s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 230s Selecting previously unselected package libtirpc-dev:s390x. 230s Preparing to unpack .../062-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 230s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 230s Selecting previously unselected package libnsl-dev:s390x. 230s Preparing to unpack .../063-libnsl-dev_1.3.0-3_s390x.deb ... 230s Unpacking libnsl-dev:s390x (1.3.0-3) ... 230s Selecting previously unselected package rpcsvc-proto. 230s Preparing to unpack .../064-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 230s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 230s Selecting previously unselected package libc6-dev:s390x. 230s Preparing to unpack .../065-libc6-dev_2.39-0ubuntu2_s390x.deb ... 230s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 230s Selecting previously unselected package gfortran-13-s390x-linux-gnu. 230s Preparing to unpack .../066-gfortran-13-s390x-linux-gnu_13.2.0-17ubuntu2_s390x.deb ... 230s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 230s Selecting previously unselected package gfortran-13. 230s Preparing to unpack .../067-gfortran-13_13.2.0-17ubuntu2_s390x.deb ... 230s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 230s Selecting previously unselected package aglfn. 230s Preparing to unpack .../068-aglfn_1.7+git20191031.4036a9c-2_all.deb ... 230s Unpacking aglfn (1.7+git20191031.4036a9c-2) ... 230s Selecting previously unselected package gnuplot-data. 230s Preparing to unpack .../069-gnuplot-data_5.4.4+dfsg1-2build1_all.deb ... 230s Unpacking gnuplot-data (5.4.4+dfsg1-2build1) ... 230s Selecting previously unselected package libpixman-1-0:s390x. 230s Preparing to unpack .../070-libpixman-1-0_0.42.2-1_s390x.deb ... 230s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 230s Selecting previously unselected package libxcb-render0:s390x. 230s Preparing to unpack .../071-libxcb-render0_1.15-1_s390x.deb ... 230s Unpacking libxcb-render0:s390x (1.15-1) ... 230s Selecting previously unselected package libxcb-shm0:s390x. 230s Preparing to unpack .../072-libxcb-shm0_1.15-1_s390x.deb ... 230s Unpacking libxcb-shm0:s390x (1.15-1) ... 230s Selecting previously unselected package libxrender1:s390x. 230s Preparing to unpack .../073-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 230s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 230s Selecting previously unselected package libcairo2:s390x. 230s Preparing to unpack .../074-libcairo2_1.18.0-1_s390x.deb ... 230s Unpacking libcairo2:s390x (1.18.0-1) ... 230s Selecting previously unselected package libxpm4:s390x. 230s Preparing to unpack .../075-libxpm4_1%3a3.5.17-1_s390x.deb ... 230s Unpacking libxpm4:s390x (1:3.5.17-1) ... 230s Selecting previously unselected package libgd3:s390x. 230s Preparing to unpack .../076-libgd3_2.3.3-9ubuntu1_s390x.deb ... 230s Unpacking libgd3:s390x (2.3.3-9ubuntu1) ... 230s Selecting previously unselected package liblua5.4-0:s390x. 230s Preparing to unpack .../077-liblua5.4-0_5.4.6-3_s390x.deb ... 230s Unpacking liblua5.4-0:s390x (5.4.6-3) ... 230s Selecting previously unselected package libgraphite2-3:s390x. 230s Preparing to unpack .../078-libgraphite2-3_1.3.14-2_s390x.deb ... 230s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 230s Selecting previously unselected package libharfbuzz0b:s390x. 230s Preparing to unpack .../079-libharfbuzz0b_8.3.0-2_s390x.deb ... 230s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 230s Selecting previously unselected package libthai-data. 230s Preparing to unpack .../080-libthai-data_0.1.29-2_all.deb ... 230s Unpacking libthai-data (0.1.29-2) ... 230s Selecting previously unselected package libdatrie1:s390x. 230s Preparing to unpack .../081-libdatrie1_0.2.13-3_s390x.deb ... 230s Unpacking libdatrie1:s390x (0.2.13-3) ... 230s Selecting previously unselected package libthai0:s390x. 230s Preparing to unpack .../082-libthai0_0.1.29-2_s390x.deb ... 230s Unpacking libthai0:s390x (0.1.29-2) ... 230s Selecting previously unselected package libpango-1.0-0:s390x. 230s Preparing to unpack .../083-libpango-1.0-0_1.51.0+ds-4_s390x.deb ... 230s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ... 230s Selecting previously unselected package libpangoft2-1.0-0:s390x. 230s Preparing to unpack .../084-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ... 230s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 230s Selecting previously unselected package libpangocairo-1.0-0:s390x. 230s Preparing to unpack .../085-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 230s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 230s Selecting previously unselected package libdouble-conversion3:s390x. 230s Preparing to unpack .../086-libdouble-conversion3_3.3.0-1_s390x.deb ... 230s Unpacking libdouble-conversion3:s390x (3.3.0-1) ... 230s Selecting previously unselected package libpcre2-16-0:s390x. 230s Preparing to unpack .../087-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ... 230s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ... 230s Selecting previously unselected package libqt5core5a:s390x. 230s Preparing to unpack .../088-libqt5core5a_5.15.12+dfsg-3ubuntu1_s390x.deb ... 230s Unpacking libqt5core5a:s390x (5.15.12+dfsg-3ubuntu1) ... 230s Selecting previously unselected package libglvnd0:s390x. 230s Preparing to unpack .../089-libglvnd0_1.7.0-1_s390x.deb ... 230s Unpacking libglvnd0:s390x (1.7.0-1) ... 230s Selecting previously unselected package libwayland-server0:s390x. 230s Preparing to unpack .../090-libwayland-server0_1.22.0-2.1_s390x.deb ... 230s Unpacking libwayland-server0:s390x (1.22.0-2.1) ... 230s Selecting previously unselected package libxcb-randr0:s390x. 230s Preparing to unpack .../091-libxcb-randr0_1.15-1_s390x.deb ... 230s Unpacking libxcb-randr0:s390x (1.15-1) ... 230s Selecting previously unselected package libgbm1:s390x. 230s Preparing to unpack .../092-libgbm1_24.0.1-1ubuntu1_s390x.deb ... 230s Unpacking libgbm1:s390x (24.0.1-1ubuntu1) ... 230s Selecting previously unselected package libglapi-mesa:s390x. 230s Preparing to unpack .../093-libglapi-mesa_24.0.1-1ubuntu1_s390x.deb ... 230s Unpacking libglapi-mesa:s390x (24.0.1-1ubuntu1) ... 230s Selecting previously unselected package libwayland-client0:s390x. 230s Preparing to unpack .../094-libwayland-client0_1.22.0-2.1_s390x.deb ... 230s Unpacking libwayland-client0:s390x (1.22.0-2.1) ... 230s Selecting previously unselected package libx11-xcb1:s390x. 230s Preparing to unpack .../095-libx11-xcb1_2%3a1.8.7-1_s390x.deb ... 230s Unpacking libx11-xcb1:s390x (2:1.8.7-1) ... 230s Selecting previously unselected package libxcb-dri2-0:s390x. 230s Preparing to unpack .../096-libxcb-dri2-0_1.15-1_s390x.deb ... 230s Unpacking libxcb-dri2-0:s390x (1.15-1) ... 230s Selecting previously unselected package libxcb-dri3-0:s390x. 230s Preparing to unpack .../097-libxcb-dri3-0_1.15-1_s390x.deb ... 230s Unpacking libxcb-dri3-0:s390x (1.15-1) ... 230s Selecting previously unselected package libxcb-present0:s390x. 230s Preparing to unpack .../098-libxcb-present0_1.15-1_s390x.deb ... 230s Unpacking libxcb-present0:s390x (1.15-1) ... 230s Selecting previously unselected package libxcb-sync1:s390x. 230s Preparing to unpack .../099-libxcb-sync1_1.15-1_s390x.deb ... 230s Unpacking libxcb-sync1:s390x (1.15-1) ... 230s Selecting previously unselected package libxcb-xfixes0:s390x. 230s Preparing to unpack .../100-libxcb-xfixes0_1.15-1_s390x.deb ... 230s Unpacking libxcb-xfixes0:s390x (1.15-1) ... 230s Selecting previously unselected package libxshmfence1:s390x. 230s Preparing to unpack .../101-libxshmfence1_1.3-1build4_s390x.deb ... 230s Unpacking libxshmfence1:s390x (1.3-1build4) ... 230s Selecting previously unselected package libegl-mesa0:s390x. 230s Preparing to unpack .../102-libegl-mesa0_24.0.1-1ubuntu1_s390x.deb ... 230s Unpacking libegl-mesa0:s390x (24.0.1-1ubuntu1) ... 230s Selecting previously unselected package libegl1:s390x. 230s Preparing to unpack .../103-libegl1_1.7.0-1_s390x.deb ... 230s Unpacking libegl1:s390x (1.7.0-1) ... 230s Selecting previously unselected package libxcb-glx0:s390x. 230s Preparing to unpack .../104-libxcb-glx0_1.15-1_s390x.deb ... 230s Unpacking libxcb-glx0:s390x (1.15-1) ... 230s Selecting previously unselected package libxfixes3:s390x. 230s Preparing to unpack .../105-libxfixes3_1%3a6.0.0-2_s390x.deb ... 230s Unpacking libxfixes3:s390x (1:6.0.0-2) ... 230s Selecting previously unselected package libxxf86vm1:s390x. 230s Preparing to unpack .../106-libxxf86vm1_1%3a1.1.4-1build3_s390x.deb ... 230s Unpacking libxxf86vm1:s390x (1:1.1.4-1build3) ... 230s Selecting previously unselected package libvulkan1:s390x. 230s Preparing to unpack .../107-libvulkan1_1.3.275.0-1_s390x.deb ... 230s Unpacking libvulkan1:s390x (1.3.275.0-1) ... 230s Selecting previously unselected package libdrm-amdgpu1:s390x. 230s Preparing to unpack .../108-libdrm-amdgpu1_2.4.120-2_s390x.deb ... 230s Unpacking libdrm-amdgpu1:s390x (2.4.120-2) ... 230s Selecting previously unselected package libdrm-nouveau2:s390x. 230s Preparing to unpack .../109-libdrm-nouveau2_2.4.120-2_s390x.deb ... 230s Unpacking libdrm-nouveau2:s390x (2.4.120-2) ... 230s Selecting previously unselected package libdrm-radeon1:s390x. 230s Preparing to unpack .../110-libdrm-radeon1_2.4.120-2_s390x.deb ... 230s Unpacking libdrm-radeon1:s390x (2.4.120-2) ... 230s Selecting previously unselected package libllvm17:s390x. 230s Preparing to unpack .../111-libllvm17_1%3a17.0.6-5build1_s390x.deb ... 230s Unpacking libllvm17:s390x (1:17.0.6-5build1) ... 230s Selecting previously unselected package libgl1-mesa-dri:s390x. 230s Preparing to unpack .../112-libgl1-mesa-dri_24.0.1-1ubuntu1_s390x.deb ... 230s Unpacking libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ... 230s Selecting previously unselected package libglx-mesa0:s390x. 230s Preparing to unpack .../113-libglx-mesa0_24.0.1-1ubuntu1_s390x.deb ... 230s Unpacking libglx-mesa0:s390x (24.0.1-1ubuntu1) ... 230s Selecting previously unselected package libglx0:s390x. 230s Preparing to unpack .../114-libglx0_1.7.0-1_s390x.deb ... 230s Unpacking libglx0:s390x (1.7.0-1) ... 230s Selecting previously unselected package libgl1:s390x. 230s Preparing to unpack .../115-libgl1_1.7.0-1_s390x.deb ... 230s Unpacking libgl1:s390x (1.7.0-1) ... 230s Selecting previously unselected package x11-common. 230s Preparing to unpack .../116-x11-common_1%3a7.7+23ubuntu2_all.deb ... 230s Unpacking x11-common (1:7.7+23ubuntu2) ... 230s Selecting previously unselected package libice6:s390x. 230s Preparing to unpack .../117-libice6_2%3a1.0.10-1build2_s390x.deb ... 230s Unpacking libice6:s390x (2:1.0.10-1build2) ... 230s Selecting previously unselected package libmtdev1:s390x. 230s Preparing to unpack .../118-libmtdev1_1.1.6-1build4_s390x.deb ... 230s Unpacking libmtdev1:s390x (1.1.6-1build4) ... 230s Selecting previously unselected package libwacom-common. 230s Preparing to unpack .../119-libwacom-common_2.10.0-1_all.deb ... 230s Unpacking libwacom-common (2.10.0-1) ... 231s Selecting previously unselected package libwacom9:s390x. 231s Preparing to unpack .../120-libwacom9_2.10.0-1_s390x.deb ... 231s Unpacking libwacom9:s390x (2.10.0-1) ... 231s Selecting previously unselected package libinput-bin. 231s Preparing to unpack .../121-libinput-bin_1.25.0-1_s390x.deb ... 231s Unpacking libinput-bin (1.25.0-1) ... 231s Selecting previously unselected package libinput10:s390x. 231s Preparing to unpack .../122-libinput10_1.25.0-1_s390x.deb ... 231s Unpacking libinput10:s390x (1.25.0-1) ... 231s Selecting previously unselected package libmd4c0:s390x. 231s Preparing to unpack .../123-libmd4c0_0.4.8-1_s390x.deb ... 231s Unpacking libmd4c0:s390x (0.4.8-1) ... 231s Selecting previously unselected package libqt5dbus5:s390x. 231s Preparing to unpack .../124-libqt5dbus5_5.15.12+dfsg-3ubuntu1_s390x.deb ... 231s Unpacking libqt5dbus5:s390x (5.15.12+dfsg-3ubuntu1) ... 231s Selecting previously unselected package libqt5network5:s390x. 231s Preparing to unpack .../125-libqt5network5_5.15.12+dfsg-3ubuntu1_s390x.deb ... 231s Unpacking libqt5network5:s390x (5.15.12+dfsg-3ubuntu1) ... 231s Selecting previously unselected package libsm6:s390x. 231s Preparing to unpack .../126-libsm6_2%3a1.2.3-1build2_s390x.deb ... 231s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 231s Selecting previously unselected package libxcb-icccm4:s390x. 231s Preparing to unpack .../127-libxcb-icccm4_0.4.1-1.1build2_s390x.deb ... 231s Unpacking libxcb-icccm4:s390x (0.4.1-1.1build2) ... 231s Selecting previously unselected package libxcb-util1:s390x. 231s Preparing to unpack .../128-libxcb-util1_0.4.0-1build2_s390x.deb ... 231s Unpacking libxcb-util1:s390x (0.4.0-1build2) ... 231s Selecting previously unselected package libxcb-image0:s390x. 231s Preparing to unpack .../129-libxcb-image0_0.4.0-2_s390x.deb ... 231s Unpacking libxcb-image0:s390x (0.4.0-2) ... 231s Selecting previously unselected package libxcb-keysyms1:s390x. 231s Preparing to unpack .../130-libxcb-keysyms1_0.4.0-1build3_s390x.deb ... 231s Unpacking libxcb-keysyms1:s390x (0.4.0-1build3) ... 231s Selecting previously unselected package libxcb-render-util0:s390x. 231s Preparing to unpack .../131-libxcb-render-util0_0.3.9-1build3_s390x.deb ... 231s Unpacking libxcb-render-util0:s390x (0.3.9-1build3) ... 231s Selecting previously unselected package libxcb-shape0:s390x. 231s Preparing to unpack .../132-libxcb-shape0_1.15-1_s390x.deb ... 231s Unpacking libxcb-shape0:s390x (1.15-1) ... 231s Selecting previously unselected package libxcb-xinerama0:s390x. 231s Preparing to unpack .../133-libxcb-xinerama0_1.15-1_s390x.deb ... 231s Unpacking libxcb-xinerama0:s390x (1.15-1) ... 231s Selecting previously unselected package libxcb-xinput0:s390x. 231s Preparing to unpack .../134-libxcb-xinput0_1.15-1_s390x.deb ... 231s Unpacking libxcb-xinput0:s390x (1.15-1) ... 231s Selecting previously unselected package libxcb-xkb1:s390x. 231s Preparing to unpack .../135-libxcb-xkb1_1.15-1_s390x.deb ... 231s Unpacking libxcb-xkb1:s390x (1.15-1) ... 231s Selecting previously unselected package libxkbcommon-x11-0:s390x. 231s Preparing to unpack .../136-libxkbcommon-x11-0_1.6.0-1_s390x.deb ... 231s Unpacking libxkbcommon-x11-0:s390x (1.6.0-1) ... 231s Selecting previously unselected package libqt5gui5:s390x. 231s Preparing to unpack .../137-libqt5gui5_5.15.12+dfsg-3ubuntu1_s390x.deb ... 231s Unpacking libqt5gui5:s390x (5.15.12+dfsg-3ubuntu1) ... 231s Selecting previously unselected package libavahi-common-data:s390x. 231s Preparing to unpack .../138-libavahi-common-data_0.8-13ubuntu2_s390x.deb ... 231s Unpacking libavahi-common-data:s390x (0.8-13ubuntu2) ... 231s Selecting previously unselected package libavahi-common3:s390x. 231s Preparing to unpack .../139-libavahi-common3_0.8-13ubuntu2_s390x.deb ... 231s Unpacking libavahi-common3:s390x (0.8-13ubuntu2) ... 231s Selecting previously unselected package libavahi-client3:s390x. 231s Preparing to unpack .../140-libavahi-client3_0.8-13ubuntu2_s390x.deb ... 231s Unpacking libavahi-client3:s390x (0.8-13ubuntu2) ... 231s Selecting previously unselected package libcups2:s390x. 231s Preparing to unpack .../141-libcups2_2.4.6-0ubuntu3_s390x.deb ... 231s Unpacking libcups2:s390x (2.4.6-0ubuntu3) ... 231s Selecting previously unselected package libqt5widgets5:s390x. 231s Preparing to unpack .../142-libqt5widgets5_5.15.12+dfsg-3ubuntu1_s390x.deb ... 231s Unpacking libqt5widgets5:s390x (5.15.12+dfsg-3ubuntu1) ... 231s Selecting previously unselected package libqt5printsupport5:s390x. 231s Preparing to unpack .../143-libqt5printsupport5_5.15.12+dfsg-3ubuntu1_s390x.deb ... 231s Unpacking libqt5printsupport5:s390x (5.15.12+dfsg-3ubuntu1) ... 231s Selecting previously unselected package libqt5svg5:s390x. 231s Preparing to unpack .../144-libqt5svg5_5.15.12-1_s390x.deb ... 231s Unpacking libqt5svg5:s390x (5.15.12-1) ... 231s Selecting previously unselected package libpcre2-32-0:s390x. 231s Preparing to unpack .../145-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ... 231s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ... 231s Selecting previously unselected package libwxbase3.2-1:s390x. 231s Preparing to unpack .../146-libwxbase3.2-1_3.2.4+dfsg-3_s390x.deb ... 231s Unpacking libwxbase3.2-1:s390x (3.2.4+dfsg-3) ... 231s Selecting previously unselected package libatk1.0-0:s390x. 231s Preparing to unpack .../147-libatk1.0-0_2.50.0-1_s390x.deb ... 231s Unpacking libatk1.0-0:s390x (2.50.0-1) ... 231s Selecting previously unselected package libxi6:s390x. 231s Preparing to unpack .../148-libxi6_2%3a1.8.1-1_s390x.deb ... 231s Unpacking libxi6:s390x (2:1.8.1-1) ... 231s Selecting previously unselected package libatspi2.0-0:s390x. 231s Preparing to unpack .../149-libatspi2.0-0_2.50.0-1_s390x.deb ... 231s Unpacking libatspi2.0-0:s390x (2.50.0-1) ... 231s Selecting previously unselected package libatk-bridge2.0-0:s390x. 231s Preparing to unpack .../150-libatk-bridge2.0-0_2.50.0-1_s390x.deb ... 231s Unpacking libatk-bridge2.0-0:s390x (2.50.0-1) ... 231s Selecting previously unselected package libcairo-gobject2:s390x. 231s Preparing to unpack .../151-libcairo-gobject2_1.18.0-1_s390x.deb ... 231s Unpacking libcairo-gobject2:s390x (1.18.0-1) ... 231s Selecting previously unselected package libcolord2:s390x. 231s Preparing to unpack .../152-libcolord2_1.4.7-1_s390x.deb ... 231s Unpacking libcolord2:s390x (1.4.7-1) ... 232s Selecting previously unselected package libepoxy0:s390x. 232s Preparing to unpack .../153-libepoxy0_1.5.10-1_s390x.deb ... 232s Unpacking libepoxy0:s390x (1.5.10-1) ... 232s Selecting previously unselected package libwayland-cursor0:s390x. 232s Preparing to unpack .../154-libwayland-cursor0_1.22.0-2.1_s390x.deb ... 232s Unpacking libwayland-cursor0:s390x (1.22.0-2.1) ... 232s Selecting previously unselected package libwayland-egl1:s390x. 232s Preparing to unpack .../155-libwayland-egl1_1.22.0-2.1_s390x.deb ... 232s Unpacking libwayland-egl1:s390x (1.22.0-2.1) ... 232s Selecting previously unselected package libxcomposite1:s390x. 232s Preparing to unpack .../156-libxcomposite1_1%3a0.4.5-1build2_s390x.deb ... 232s Unpacking libxcomposite1:s390x (1:0.4.5-1build2) ... 232s Selecting previously unselected package libxcursor1:s390x. 232s Preparing to unpack .../157-libxcursor1_1%3a1.2.1-1_s390x.deb ... 232s Unpacking libxcursor1:s390x (1:1.2.1-1) ... 232s Selecting previously unselected package libxdamage1:s390x. 232s Preparing to unpack .../158-libxdamage1_1%3a1.1.6-1_s390x.deb ... 232s Unpacking libxdamage1:s390x (1:1.1.6-1) ... 232s Selecting previously unselected package libxinerama1:s390x. 232s Preparing to unpack .../159-libxinerama1_2%3a1.1.4-3_s390x.deb ... 232s Unpacking libxinerama1:s390x (2:1.1.4-3) ... 232s Selecting previously unselected package libxrandr2:s390x. 232s Preparing to unpack .../160-libxrandr2_2%3a1.5.2-2_s390x.deb ... 232s Unpacking libxrandr2:s390x (2:1.5.2-2) ... 232s Selecting previously unselected package libgtk-3-common. 232s Preparing to unpack .../161-libgtk-3-common_3.24.40-2ubuntu1_all.deb ... 232s Unpacking libgtk-3-common (3.24.40-2ubuntu1) ... 232s Selecting previously unselected package libgtk-3-0:s390x. 232s Preparing to unpack .../162-libgtk-3-0_3.24.40-2ubuntu1_s390x.deb ... 232s Unpacking libgtk-3-0:s390x (3.24.40-2ubuntu1) ... 232s Selecting previously unselected package libnotify4:s390x. 232s Preparing to unpack .../163-libnotify4_0.8.3-1_s390x.deb ... 232s Unpacking libnotify4:s390x (0.8.3-1) ... 232s Selecting previously unselected package libxtst6:s390x. 232s Preparing to unpack .../164-libxtst6_2%3a1.2.3-1.1_s390x.deb ... 232s Unpacking libxtst6:s390x (2:1.2.3-1.1) ... 232s Selecting previously unselected package libwxgtk3.2-1:s390x. 232s Preparing to unpack .../165-libwxgtk3.2-1_3.2.4+dfsg-3_s390x.deb ... 232s Unpacking libwxgtk3.2-1:s390x (3.2.4+dfsg-3) ... 232s Selecting previously unselected package gnuplot-qt. 232s Preparing to unpack .../166-gnuplot-qt_5.4.4+dfsg1-2build1_s390x.deb ... 232s Unpacking gnuplot-qt (5.4.4+dfsg1-2build1) ... 232s Selecting previously unselected package gnuplot. 232s Preparing to unpack .../167-gnuplot_5.4.4+dfsg1-2build1_all.deb ... 232s Unpacking gnuplot (5.4.4+dfsg1-2build1) ... 232s Selecting previously unselected package icu-devtools. 232s Preparing to unpack .../168-icu-devtools_74.2-1ubuntu1_s390x.deb ... 232s Unpacking icu-devtools (74.2-1ubuntu1) ... 232s Selecting previously unselected package imagemagick-6.q16. 232s Preparing to unpack .../169-imagemagick-6.q16_8%3a6.9.12.98+dfsg1-5_s390x.deb ... 232s Unpacking imagemagick-6.q16 (8:6.9.12.98+dfsg1-5) ... 232s Selecting previously unselected package imagemagick. 232s Preparing to unpack .../170-imagemagick_8%3a6.9.12.98+dfsg1-5_s390x.deb ... 232s Unpacking imagemagick (8:6.9.12.98+dfsg1-5) ... 232s Selecting previously unselected package libio-string-perl. 232s Preparing to unpack .../171-libio-string-perl_1.08-4_all.deb ... 232s Unpacking libio-string-perl (1.08-4) ... 232s Selecting previously unselected package libdata-stag-perl. 232s Preparing to unpack .../172-libdata-stag-perl_0.14-3_all.deb ... 232s Unpacking libdata-stag-perl (0.14-3) ... 232s Selecting previously unselected package libbio-perl-perl. 232s Preparing to unpack .../173-libbio-perl-perl_1.7.8-1_all.deb ... 232s Unpacking libbio-perl-perl (1.7.8-1) ... 232s Selecting previously unselected package libblas3:s390x. 233s Preparing to unpack .../174-libblas3_3.12.0-3_s390x.deb ... 233s Unpacking libblas3:s390x (3.12.0-3) ... 233s Selecting previously unselected package libstdc++-13-dev:s390x. 233s Preparing to unpack .../175-libstdc++-13-dev_13.2.0-17ubuntu2_s390x.deb ... 233s Unpacking libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 233s Selecting previously unselected package libboost1.83-dev:s390x. 233s Preparing to unpack .../176-libboost1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 233s Unpacking libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 239s Selecting previously unselected package libboost-atomic1.83.0:s390x. 239s Preparing to unpack .../177-libboost-atomic1.83.0_1.83.0-2ubuntu1_s390x.deb ... 239s Unpacking libboost-atomic1.83.0:s390x (1.83.0-2ubuntu1) ... 239s Selecting previously unselected package libboost-atomic1.83-dev:s390x. 239s Preparing to unpack .../178-libboost-atomic1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 239s Unpacking libboost-atomic1.83-dev:s390x (1.83.0-2ubuntu1) ... 239s Selecting previously unselected package libboost-filesystem1.83.0:s390x. 239s Preparing to unpack .../179-libboost-filesystem1.83.0_1.83.0-2ubuntu1_s390x.deb ... 239s Unpacking libboost-filesystem1.83.0:s390x (1.83.0-2ubuntu1) ... 239s Selecting previously unselected package libboost-system1.83.0:s390x. 239s Preparing to unpack .../180-libboost-system1.83.0_1.83.0-2ubuntu1_s390x.deb ... 239s Unpacking libboost-system1.83.0:s390x (1.83.0-2ubuntu1) ... 239s Selecting previously unselected package libboost-system1.83-dev:s390x. 239s Preparing to unpack .../181-libboost-system1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 239s Unpacking libboost-system1.83-dev:s390x (1.83.0-2ubuntu1) ... 239s Selecting previously unselected package libboost-filesystem1.83-dev:s390x. 239s Preparing to unpack .../182-libboost-filesystem1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 239s Unpacking libboost-filesystem1.83-dev:s390x (1.83.0-2ubuntu1) ... 239s Selecting previously unselected package libboost-filesystem-dev:s390x. 239s Preparing to unpack .../183-libboost-filesystem-dev_1.83.0.1ubuntu2_s390x.deb ... 239s Unpacking libboost-filesystem-dev:s390x (1.83.0.1ubuntu2) ... 239s Selecting previously unselected package libboost-regex1.83.0:s390x. 239s Preparing to unpack .../184-libboost-regex1.83.0_1.83.0-2ubuntu1_s390x.deb ... 239s Unpacking libboost-regex1.83.0:s390x (1.83.0-2ubuntu1) ... 239s Selecting previously unselected package libicu-dev:s390x. 239s Preparing to unpack .../185-libicu-dev_74.2-1ubuntu1_s390x.deb ... 239s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ... 239s Selecting previously unselected package libboost-regex1.83-dev:s390x. 239s Preparing to unpack .../186-libboost-regex1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 239s Unpacking libboost-regex1.83-dev:s390x (1.83.0-2ubuntu1) ... 239s Selecting previously unselected package libboost-iostreams1.83.0:s390x. 239s Preparing to unpack .../187-libboost-iostreams1.83.0_1.83.0-2ubuntu1_s390x.deb ... 239s Unpacking libboost-iostreams1.83.0:s390x (1.83.0-2ubuntu1) ... 239s Selecting previously unselected package libboost-iostreams1.83-dev:s390x. 239s Preparing to unpack .../188-libboost-iostreams1.83-dev_1.83.0-2ubuntu1_s390x.deb ... 239s Unpacking libboost-iostreams1.83-dev:s390x (1.83.0-2ubuntu1) ... 239s Selecting previously unselected package libboost-iostreams-dev:s390x. 239s Preparing to unpack .../189-libboost-iostreams-dev_1.83.0.1ubuntu2_s390x.deb ... 239s Unpacking libboost-iostreams-dev:s390x (1.83.0.1ubuntu2) ... 239s Selecting previously unselected package libboost-regex-dev:s390x. 239s Preparing to unpack .../190-libboost-regex-dev_1.83.0.1ubuntu2_s390x.deb ... 239s Unpacking libboost-regex-dev:s390x (1.83.0.1ubuntu2) ... 239s Selecting previously unselected package libcrypto++8t64:s390x. 239s Preparing to unpack .../191-libcrypto++8t64_8.9.0-1.1_s390x.deb ... 239s Unpacking libcrypto++8t64:s390x (8.9.0-1.1) ... 239s Selecting previously unselected package libcrypto++-dev:s390x. 239s Preparing to unpack .../192-libcrypto++-dev_8.9.0-1.1_s390x.deb ... 239s Unpacking libcrypto++-dev:s390x (8.9.0-1.1) ... 239s Selecting previously unselected package libevent-2.1-7:s390x. 239s Preparing to unpack .../193-libevent-2.1-7_2.1.12-stable-9_s390x.deb ... 239s Unpacking libevent-2.1-7:s390x (2.1.12-stable-9) ... 239s Selecting previously unselected package libevent-extra-2.1-7:s390x. 239s Preparing to unpack .../194-libevent-extra-2.1-7_2.1.12-stable-9_s390x.deb ... 239s Unpacking libevent-extra-2.1-7:s390x (2.1.12-stable-9) ... 239s Selecting previously unselected package libevent-pthreads-2.1-7:s390x. 239s Preparing to unpack .../195-libevent-pthreads-2.1-7_2.1.12-stable-9_s390x.deb ... 239s Unpacking libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ... 239s Selecting previously unselected package libevent-openssl-2.1-7:s390x. 239s Preparing to unpack .../196-libevent-openssl-2.1-7_2.1.12-stable-9_s390x.deb ... 239s Unpacking libevent-openssl-2.1-7:s390x (2.1.12-stable-9) ... 239s Selecting previously unselected package libevent-dev. 239s Preparing to unpack .../197-libevent-dev_2.1.12-stable-9_s390x.deb ... 239s Unpacking libevent-dev (2.1.12-stable-9) ... 239s Selecting previously unselected package librdmacm1t64:s390x. 239s Preparing to unpack .../198-librdmacm1t64_50.0-2_s390x.deb ... 239s Unpacking librdmacm1t64:s390x (50.0-2) ... 239s Selecting previously unselected package libfabric1:s390x. 239s Preparing to unpack .../199-libfabric1_1.17.0-3build1_s390x.deb ... 239s Unpacking libfabric1:s390x (1.17.0-3build1) ... 239s Selecting previously unselected package libhwloc15:s390x. 239s Preparing to unpack .../200-libhwloc15_2.10.0-1_s390x.deb ... 239s Unpacking libhwloc15:s390x (2.10.0-1) ... 239s Selecting previously unselected package libjs-jquery. 239s Preparing to unpack .../201-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 239s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 239s Selecting previously unselected package libjs-jquery-ui. 239s Preparing to unpack .../202-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 239s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 239s Selecting previously unselected package liblapack3:s390x. 239s Preparing to unpack .../203-liblapack3_3.12.0-3_s390x.deb ... 239s Unpacking liblapack3:s390x (3.12.0-3) ... 239s Selecting previously unselected package libltdl-dev:s390x. 239s Preparing to unpack .../204-libltdl-dev_2.4.7-7_s390x.deb ... 239s Unpacking libltdl-dev:s390x (2.4.7-7) ... 239s Selecting previously unselected package libnl-3-dev:s390x. 239s Preparing to unpack .../205-libnl-3-dev_3.7.0-0.3_s390x.deb ... 239s Unpacking libnl-3-dev:s390x (3.7.0-0.3) ... 239s Selecting previously unselected package libnl-route-3-dev:s390x. 239s Preparing to unpack .../206-libnl-route-3-dev_3.7.0-0.3_s390x.deb ... 239s Unpacking libnl-route-3-dev:s390x (3.7.0-0.3) ... 239s Selecting previously unselected package libmunge2:s390x. 239s Preparing to unpack .../207-libmunge2_0.5.15-3ubuntu1_s390x.deb ... 239s Unpacking libmunge2:s390x (0.5.15-3ubuntu1) ... 239s Selecting previously unselected package libpciaccess0:s390x. 239s Preparing to unpack .../208-libpciaccess0_0.17-3_s390x.deb ... 239s Unpacking libpciaccess0:s390x (0.17-3) ... 239s Selecting previously unselected package libxnvctrl0:s390x. 239s Preparing to unpack .../209-libxnvctrl0_510.47.03-0ubuntu1_s390x.deb ... 239s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu1) ... 239s Selecting previously unselected package ocl-icd-libopencl1:s390x. 239s Preparing to unpack .../210-ocl-icd-libopencl1_2.3.2-1_s390x.deb ... 239s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1) ... 239s Selecting previously unselected package libhwloc-plugins:s390x. 239s Preparing to unpack .../211-libhwloc-plugins_2.10.0-1_s390x.deb ... 239s Unpacking libhwloc-plugins:s390x (2.10.0-1) ... 239s Selecting previously unselected package libpmix2:s390x. 239s Preparing to unpack .../212-libpmix2_5.0.1-4_s390x.deb ... 239s Unpacking libpmix2:s390x (5.0.1-4) ... 239s Selecting previously unselected package libopenmpi3:s390x. 239s Preparing to unpack .../213-libopenmpi3_4.1.6-5ubuntu1_s390x.deb ... 239s Unpacking libopenmpi3:s390x (4.1.6-5ubuntu1) ... 239s Selecting previously unselected package libpaper1:s390x. 239s Preparing to unpack .../214-libpaper1_1.1.29_s390x.deb ... 239s Unpacking libpaper1:s390x (1.1.29) ... 239s Selecting previously unselected package libpaper-utils. 239s Preparing to unpack .../215-libpaper-utils_1.1.29_s390x.deb ... 239s Unpacking libpaper-utils (1.1.29) ... 239s Selecting previously unselected package libnuma-dev:s390x. 239s Preparing to unpack .../216-libnuma-dev_2.0.18-1_s390x.deb ... 239s Unpacking libnuma-dev:s390x (2.0.18-1) ... 239s Selecting previously unselected package libhwloc-dev:s390x. 239s Preparing to unpack .../217-libhwloc-dev_2.10.0-1_s390x.deb ... 239s Unpacking libhwloc-dev:s390x (2.10.0-1) ... 239s Selecting previously unselected package zlib1g-dev:s390x. 239s Preparing to unpack .../218-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 239s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 239s Selecting previously unselected package libpmix-dev:s390x. 239s Preparing to unpack .../219-libpmix-dev_5.0.1-4_s390x.deb ... 239s Unpacking libpmix-dev:s390x (5.0.1-4) ... 239s Selecting previously unselected package libpstreams-dev. 239s Preparing to unpack .../220-libpstreams-dev_1.0.3-1_all.deb ... 239s Unpacking libpstreams-dev (1.0.3-1) ... 239s Selecting previously unselected package libtcl8.6:s390x. 239s Preparing to unpack .../221-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 239s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 239s Selecting previously unselected package libterm-readkey-perl. 239s Preparing to unpack .../222-libterm-readkey-perl_2.38-2build2_s390x.deb ... 239s Unpacking libterm-readkey-perl (2.38-2build2) ... 239s Selecting previously unselected package libtext-wrapper-perl. 239s Preparing to unpack .../223-libtext-wrapper-perl_1.05-4_all.deb ... 239s Unpacking libtext-wrapper-perl (1.05-4) ... 239s Selecting previously unselected package libxft2:s390x. 239s Preparing to unpack .../224-libxft2_2.3.6-1_s390x.deb ... 239s Unpacking libxft2:s390x (2.3.6-1) ... 239s Selecting previously unselected package libxss1:s390x. 239s Preparing to unpack .../225-libxss1_1%3a1.2.3-1build2_s390x.deb ... 239s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 239s Selecting previously unselected package libtk8.6:s390x. 239s Preparing to unpack .../226-libtk8.6_8.6.13-2_s390x.deb ... 239s Unpacking libtk8.6:s390x (8.6.13-2) ... 239s Selecting previously unselected package libxt6:s390x. 239s Preparing to unpack .../227-libxt6_1%3a1.2.1-1.1_s390x.deb ... 239s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 239s Selecting previously unselected package zip. 239s Preparing to unpack .../228-zip_3.0-13_s390x.deb ... 239s Unpacking zip (3.0-13) ... 239s Selecting previously unselected package unzip. 239s Preparing to unpack .../229-unzip_6.0-28ubuntu3_s390x.deb ... 239s Unpacking unzip (6.0-28ubuntu3) ... 239s Selecting previously unselected package xdg-utils. 239s Preparing to unpack .../230-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 239s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 239s Selecting previously unselected package r-base-core. 239s Preparing to unpack .../231-r-base-core_4.3.2-1build1_s390x.deb ... 239s Unpacking r-base-core (4.3.2-1build1) ... 239s Selecting previously unselected package r-cran-gtools. 239s Preparing to unpack .../232-r-cran-gtools_3.9.5-1_s390x.deb ... 239s Unpacking r-cran-gtools (3.9.5-1) ... 239s Selecting previously unselected package r-cran-bitops. 239s Preparing to unpack .../233-r-cran-bitops_1.0-7-1_s390x.deb ... 239s Unpacking r-cran-bitops (1.0-7-1) ... 239s Selecting previously unselected package r-cran-catools. 239s Preparing to unpack .../234-r-cran-catools_1.18.2-1_s390x.deb ... 239s Unpacking r-cran-catools (1.18.2-1) ... 239s Selecting previously unselected package r-cran-mass. 239s Preparing to unpack .../235-r-cran-mass_7.3-60.0.1-1_s390x.deb ... 239s Unpacking r-cran-mass (7.3-60.0.1-1) ... 239s Selecting previously unselected package r-cran-kernsmooth. 239s Preparing to unpack .../236-r-cran-kernsmooth_2.23-22-1_s390x.deb ... 239s Unpacking r-cran-kernsmooth (2.23-22-1) ... 239s Selecting previously unselected package r-cran-gdata. 239s Preparing to unpack .../237-r-cran-gdata_3.0.0-1_all.deb ... 239s Unpacking r-cran-gdata (3.0.0-1) ... 239s Selecting previously unselected package r-cran-gplots. 239s Preparing to unpack .../238-r-cran-gplots_3.1.3.1-1_all.deb ... 239s Unpacking r-cran-gplots (3.1.3.1-1) ... 239s Selecting previously unselected package r-cran-rocr. 239s Preparing to unpack .../239-r-cran-rocr_1.0-11-2build1_all.deb ... 239s Unpacking r-cran-rocr (1.0-11-2build1) ... 239s Selecting previously unselected package murasaki-common. 239s Preparing to unpack .../240-murasaki-common_1.68.6-13build4_all.deb ... 239s Unpacking murasaki-common (1.68.6-13build4) ... 239s Selecting previously unselected package murasaki. 239s Preparing to unpack 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libopenmpi-dev:s390x (4.1.6-5ubuntu1) ... 239s Selecting previously unselected package autopkgtest-satdep. 239s Preparing to unpack .../247-1-autopkgtest-satdep.deb ... 239s Unpacking autopkgtest-satdep (0) ... 240s Setting up libgraphite2-3:s390x (1.3.14-2) ... 240s Setting up libxcb-dri3-0:s390x (1.15-1) ... 240s Setting up liblcms2-2:s390x (2.14-2) ... 240s Setting up libpixman-1-0:s390x (0.42.2-1) ... 240s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 240s Setting up libwayland-server0:s390x (1.22.0-2.1) ... 240s Setting up libpaper1:s390x (1.1.29) ... 240s 240s Creating config file /etc/papersize with new version 240s Setting up libx11-xcb1:s390x (2:1.8.7-1) ... 240s Setting up libpciaccess0:s390x (0.17-3) ... 240s Setting up imagemagick-6-common (8:6.9.12.98+dfsg1-5) ... 240s Setting up libdouble-conversion3:s390x (3.3.0-1) ... 240s Setting up libevent-extra-2.1-7:s390x (2.1.12-stable-9) ... 240s Setting up libdrm-nouveau2:s390x (2.4.120-2) ... 240s Setting up libxdamage1:s390x 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Setting up linux-libc-dev:s390x (6.8.0-11.11) ... 240s Setting up libevent-openssl-2.1-7:s390x (2.1.12-stable-9) ... 240s Setting up m4 (1.4.19-4) ... 240s Setting up libxcb-render-util0:s390x (0.3.9-1build3) ... 240s Setting up libxcb-shm0:s390x (1.15-1) ... 240s Setting up libxcb-icccm4:s390x (0.4.1-1.1build2) ... 240s Setting up libpaper-utils (1.1.29) ... 240s Setting up libatspi2.0-0:s390x (2.50.0-1) ... 240s Setting up libtext-wrapper-perl (1.05-4) ... 240s Setting up libboost-filesystem1.83.0:s390x (1.83.0-2ubuntu1) ... 240s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 240s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 240s Setting up libpcre2-16-0:s390x (10.42-4ubuntu1) ... 240s Setting up libcolord2:s390x (1.4.7-1) ... 240s Setting up libxcb-util1:s390x (0.4.0-1build2) ... 240s Setting up libxxf86vm1:s390x (1:1.1.4-1build3) ... 240s Setting up libxcb-xkb1:s390x (1.15-1) ... 240s Setting up libxcb-image0:s390x (0.4.0-2) ... 240s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu1) ... 240s Setting up libboost-atomic1.83.0:s390x (1.83.0-2ubuntu1) ... 240s Setting up libxcb-present0:s390x (1.15-1) ... 240s Setting up libdconf1:s390x (0.40.0-4) ... 240s Setting up libio-string-perl (1.08-4) ... 240s Setting up zip (3.0-13) ... 240s Setting up autotools-dev (20220109.1) ... 240s Setting up libpcre2-32-0:s390x (10.42-4ubuntu1) ... 240s Setting up libblas3:s390x (3.12.0-3) ... 240s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 240s Setting up libxcb-xinerama0:s390x (1.15-1) ... 240s Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ... 240s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 240s Setting up gcc-13-base:s390x (13.2.0-17ubuntu2) ... 240s Setting up libmunge2:s390x (0.5.15-3ubuntu1) ... 240s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 240s Setting up libepoxy0:s390x (1.5.10-1) ... 240s Setting up libxfixes3:s390x (1:6.0.0-2) ... 240s Setting up libxcb-sync1:s390x (1.15-1) ... 240s Setting up libboost-iostreams1.83.0:s390x (1.83.0-2ubuntu1) ... 240s Setting up aglfn (1.7+git20191031.4036a9c-2) ... 240s Setting up libavahi-common-data:s390x (0.8-13ubuntu2) ... 240s Setting up libxinerama1:s390x (2:1.1.4-3) ... 240s Setting up libxkbcommon-x11-0:s390x (1.6.0-1) ... 240s Setting up fonts-dejavu-mono (2.37-8) ... 240s Setting up libhwloc15:s390x (2.10.0-1) ... 240s Setting up libmpc3:s390x (1.3.1-1) ... 240s Setting up libcrypto++8t64:s390x (8.9.0-1.1) ... 240s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ... 240s Setting up libevent-2.1-7:s390x (2.1.12-stable-9) ... 240s Setting up libxrandr2:s390x (2:1.5.2-2) ... 240s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 240s Setting up icu-devtools (74.2-1ubuntu1) ... 240s Setting up fonts-dejavu-core (2.37-8) ... 240s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 240s Setting up libqt5core5a:s390x (5.15.12+dfsg-3ubuntu1) ... 240s Setting up libltdl7:s390x (2.4.7-7) ... 240s Setting up libfftw3-double3:s390x (3.3.10-1ubuntu1) ... 240s Setting up libglapi-mesa:s390x (24.0.1-1ubuntu1) ... 240s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 240s Setting up libmtdev1:s390x (1.1.6-1build4) ... 240s Setting up libvulkan1:s390x (1.3.275.0-1) ... 240s Setting up autoconf (2.71-3) ... 240s Setting up libwebp7:s390x (1.3.2-0.4) ... 240s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ... 240s Setting up libxcb-dri2-0:s390x (1.15-1) ... 240s Setting up libdata-stag-perl (0.14-3) ... 240s Setting up libdav1d7:s390x (1.4.0-1) ... 240s Setting up libnl-3-dev:s390x (3.7.0-0.3) ... 240s Setting up liblqr-1-0:s390x (0.4.2-2.1) ... 240s Setting up libnsl-dev:s390x (1.3.0-3) ... 240s Setting up ocl-icd-libopencl1:s390x (2.3.2-1) ... 240s Setting up libxshmfence1:s390x (1.3-1build4) ... 240s Setting up at-spi2-common (2.50.0-1) ... 240s Setting up libqt5dbus5:s390x (5.15.12+dfsg-3ubuntu1) ... 240s Setting up libcrypt-dev:s390x (1:4.4.36-4) ... 240s Setting up libxcb-randr0:s390x (1.15-1) ... 240s Setting up libasan8:s390x (14-20240303-1ubuntu1) ... 240s Setting up openmpi-common (4.1.6-5ubuntu1) ... 240s Setting up libmd4c0:s390x (0.4.8-1) ... 240s Setting up librdmacm1t64:s390x (50.0-2) ... 240s Setting up liblua5.4-0:s390x (5.4.6-3) ... 240s Setting up libopenjp2-7:s390x (2.5.0-2) ... 240s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 240s Setting up libthai-data (0.1.29-2) ... 240s Setting up libatk1.0-0:s390x (2.50.0-1) ... 240s Setting up libwayland-egl1:s390x (1.22.0-2.1) ... 240s Setting up libbio-perl-perl (1.7.8-1) ... 240s Setting up libxss1:s390x (1:1.2.3-1build2) ... 240s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 240s Setting up libterm-readkey-perl (2.38-2build2) ... 240s Setting up libisl23:s390x (0.26-3) ... 240s Setting up libde265-0:s390x (1.0.15-1) ... 240s Setting up libc-dev-bin (2.39-0ubuntu2) ... 240s Setting up libwebpmux3:s390x (1.3.2-0.4) ... 240s Setting up libllvm17:s390x (1:17.0.6-5build1) ... 240s Setting up libxcomposite1:s390x (1:0.4.5-1build2) ... 240s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 240s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 240s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ... 240s Setting up libitm1:s390x (14-20240303-1ubuntu1) ... 240s Setting up libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ... 240s Setting up libdrm-amdgpu1:s390x (2.4.120-2) ... 240s Setting up libwacom-common (2.10.0-1) ... 240s Setting up libwayland-client0:s390x (1.22.0-2.1) ... 240s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 240s Setting up automake (1:1.16.5-1.3ubuntu1) ... 240s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 240s Setting up libfabric1:s390x (1.17.0-3build1) ... 240s Setting up gnuplot-data (5.4.4+dfsg1-2build1) ... 240s Setting up libice6:s390x (2:1.0.10-1build2) ... 240s Setting up liblapack3:s390x (3.12.0-3) ... 240s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 240s Setting up libgbm1:s390x (24.0.1-1ubuntu1) ... 240s Setting up libwacom9:s390x (2.10.0-1) ... 240s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 241s Setting up libxtst6:s390x (2:1.2.3-1.1) ... 241s Setting up libwebpdemux2:s390x (1.3.2-0.4) ... 241s Setting up libxcursor1:s390x (1:1.2.1-1) ... 241s Setting up libcrypto++-dev:s390x (8.9.0-1.1) ... 241s Setting up libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ... 241s Setting up libavahi-common3:s390x (0.8-13ubuntu2) ... 241s Setting up dconf-service (0.40.0-4) ... 241s Setting up libhwloc-plugins:s390x (2.10.0-1) ... 241s Setting up libwxbase3.2-1:s390x (3.2.4+dfsg-3) ... 241s Setting up libqt5network5:s390x (5.15.12+dfsg-3ubuntu1) ... 241s Setting up libinput-bin (1.25.0-1) ... 241s Setting up libatk-bridge2.0-0:s390x (2.50.0-1) ... 241s Setting up libnl-route-3-dev:s390x (3.7.0-0.3) ... 241s Setting up libltdl-dev:s390x (2.4.7-7) ... 241s Setting up libthai0:s390x (0.1.29-2) ... 241s Setting up libegl-mesa0:s390x (24.0.1-1ubuntu1) ... 241s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 241s Setting up cpp-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 241s Setting up libevent-dev (2.1.12-stable-9) ... 241s Setting up libpstreams-dev (1.0.3-1) ... 241s Setting up libgcc-13-dev:s390x (13.2.0-17ubuntu2) ... 241s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 241s Setting up libwayland-cursor0:s390x (1.22.0-2.1) ... 241s Setting up libegl1:s390x (1.7.0-1) ... 241s Setting up libc6-dev:s390x (2.39-0ubuntu2) ... 241s Setting up libgdk-pixbuf-2.0-0:s390x (2.42.10+dfsg-3) ... 241s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 241s Setting up libraw23:s390x (0.21.2-2) ... 241s Setting up libgfortran-13-dev:s390x (13.2.0-17ubuntu2) ... 241s Setting up libsm6:s390x (2:1.2.3-1build2) ... 241s Setting up libicu-dev:s390x (74.2-1ubuntu1) ... 241s Setting up libavahi-client3:s390x (0.8-13ubuntu2) ... 241s Setting up libstdc++-13-dev:s390x (13.2.0-17ubuntu2) ... 241s Setting up libinput10:s390x (1.25.0-1) ... 241s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 241s Setting up fontconfig (2.15.0-1ubuntu1) ... 243s Regenerating fonts cache... done. 243s Setting up libxft2:s390x (2.3.6-1) ... 243s Setting up libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... 243s Setting up libglx-mesa0:s390x (24.0.1-1ubuntu1) ... 243s Setting up libglx0:s390x (1.7.0-1) ... 243s Setting up dconf-gsettings-backend:s390x (0.40.0-4) ... 243s Setting up libpmix2:s390x (5.0.1-4) ... 243s Setting up libopenmpi3:s390x (4.1.6-5ubuntu1) ... 243s Setting up libtk8.6:s390x (8.6.13-2) ... 243s Setting up libpango-1.0-0:s390x (1.51.0+ds-4) ... 243s Setting up libibverbs-dev:s390x (50.0-2) ... 243s Setting up libcairo2:s390x (1.18.0-1) ... 243s Setting up libnuma-dev:s390x (2.0.18-1) ... 243s Setting up libgl1:s390x (1.7.0-1) ... 243s Setting up gcc-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 243s Setting up libnotify4:s390x (0.8.3-1) ... 243s Setting up libgd3:s390x (2.3.3-9ubuntu1) ... 243s Setting up gcc-13 (13.2.0-17ubuntu2) ... 243s Setting up libboost-regex1.83-dev:s390x (1.83.0-2ubuntu1) ... 243s Setting up libxt6:s390x (1:1.2.1-1.1) ... 243s Setting up libboost-atomic1.83-dev:s390x (1.83.0-2ubuntu1) ... 243s Setting up libcups2:s390x (2.4.6-0ubuntu3) ... 243s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 243s Setting up gfortran-13-s390x-linux-gnu (13.2.0-17ubuntu2) ... 243s Setting up libcairo-gobject2:s390x (1.18.0-1) ... 243s Setting up libhwloc-dev:s390x (2.10.0-1) ... 243s Setting up libboost-system1.83-dev:s390x (1.83.0-2ubuntu1) ... 243s Setting up libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 243s Setting up libboost-regex-dev:s390x (1.83.0.1ubuntu2) ... 243s Setting up libpmix-dev:s390x (5.0.1-4) ... 243s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 243s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 243s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 243s Setting up libgtk-3-common (3.24.40-2ubuntu1) ... 243s Setting up libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 243s Setting up libboost-iostreams1.83-dev:s390x (1.83.0-2ubuntu1) ... 243s Setting up libqt5gui5:s390x (5.15.12+dfsg-3ubuntu1) ... 243s Setting up libqt5widgets5:s390x (5.15.12+dfsg-3ubuntu1) ... 243s Setting up libboost-filesystem1.83-dev:s390x (1.83.0-2ubuntu1) ... 243s Setting up libboost-iostreams-dev:s390x (1.83.0.1ubuntu2) ... 243s Setting up libqt5printsupport5:s390x (5.15.12+dfsg-3ubuntu1) ... 243s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 243s Setting up r-base-core (4.3.2-1build1) ... 243s 243s Creating config file /etc/R/Renviron with new version 243s Setting up libopenmpi-dev:s390x (4.1.6-5ubuntu1) ... 243s update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode 243s Setting up libboost-filesystem-dev:s390x (1.83.0.1ubuntu2) ... 243s Setting up libqt5svg5:s390x (5.15.12-1) ... 243s Setting up r-cran-mass (7.3-60.0.1-1) ... 243s Setting up r-cran-gtools (3.9.5-1) ... 243s Setting up r-cran-bitops (1.0-7-1) ... 243s Setting up r-cran-kernsmooth (2.23-22-1) ... 243s Setting up r-cran-catools (1.18.2-1) ... 243s Setting up r-cran-gdata (3.0.0-1) ... 243s Setting up r-cran-gplots (3.1.3.1-1) ... 243s Setting up r-cran-rocr (1.0-11-2build1) ... 243s Setting up adwaita-icon-theme (46~rc-1) ... 243s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 243s Setting up libheif-plugin-dav1d:s390x (1.17.6-1ubuntu1) ... 243s Setting up libheif-plugin-libde265:s390x (1.17.6-1ubuntu1) ... 243s Setting up libheif1:s390x (1.17.6-1ubuntu1) ... 243s Setting up libmagickcore-6.q16-7:s390x (8:6.9.12.98+dfsg1-5) ... 243s Setting up humanity-icon-theme (0.6.16) ... 243s Setting up libmagickwand-6.q16-7:s390x (8:6.9.12.98+dfsg1-5) ... 243s Setting up ubuntu-mono (24.04-0ubuntu1) ... 243s Setting up imagemagick-6.q16 (8:6.9.12.98+dfsg1-5) ... 243s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode 243s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode 243s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode 243s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode 243s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode 243s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode 243s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode 243s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode 243s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode 243s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode 243s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode 243s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode 243s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode 243s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode 243s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode 243s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode 243s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode 243s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode 243s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode 243s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode 243s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode 243s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode 243s Setting up imagemagick (8:6.9.12.98+dfsg1-5) ... 243s Processing triggers for install-info (7.1-3) ... 243s Processing triggers for libc-bin (2.39-0ubuntu2) ... 244s Processing triggers for man-db (2.12.0-3) ... 246s Processing triggers for libglib2.0-0t64:s390x (2.79.3-3ubuntu5) ... 246s Processing triggers for udev (255.2-3ubuntu2) ... 246s Setting up libgtk-3-0:s390x (3.24.40-2ubuntu1) ... 246s Setting up libwxgtk3.2-1:s390x (3.2.4+dfsg-3) ... 246s Setting up gnuplot-qt (5.4.4+dfsg1-2build1) ... 246s update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode 246s Setting up murasaki-common (1.68.6-13build4) ... 246s Setting up gnuplot (5.4.4+dfsg1-2build1) ... 246s Setting up murasaki (1.68.6-13build4) ... 246s Setting up murasaki-mpi (1.68.6-13build4) ... 246s Setting up autopkgtest-satdep (0) ... 246s Processing triggers for libc-bin (2.39-0ubuntu2) ... 255s (Reading database ... 93283 files and directories currently installed.) 255s Removing autopkgtest-satdep (0) ... 256s autopkgtest [08:30:55]: test run-unit-test: [----------------------- 256s Test Murasaki on NZ_GG705055.fna 256s Created output directory: /tmp/autopkgtest.UNP7Xu/autopkgtest_tmp/output 256s Verbosity level is: 0 256s Writing to: output/test 256s Pattern is: 101 256s Max usable hash bits: 27 256s Hit filter is: 0 256s Hash table type is: EcoHash 256s Hashing every: 1 base 256s Histogram detail is: 0 256s Hashing function is: 3 256s Collision profiling is: disabled 256s Repeats are: unmasked 256s Mergefilter is at: 100 256s Random seed: 1711009855 (automatic) 256s Bitscore output: on 256s Leave status records: no 256s Join neighbors is: off 256s Target memory is: 1.30 GB 256s Retain members is: true 256s Store repeatmap? yes 256s Reverse complement data is generated on the fly 256s Rifts allowed: 0 256s Fuzzy Extension: yes 256s Score by minimum pair: yes 256s Gapped anchors: no 256s Large sequence support is: enabled => seqpos is 8 bytes 256s Murasaki version 1.68.6 (LARGESEQ) 256s Loading NZ_GG705055.fna 256s Read 398859bp (389.51 KBp) in 0.018 seconds (21.3 MBp/s) 256s Done with forward strand (410644bp). Preparing reverse complement... 256s <-> Reversing metdata. 256s Done. 256s Seq NZ_GG705055.fna loaded. 401.02 KB 256s Loading NZ_GG705055.gbk 256s Read 398859bp (389.51 KBp) in 0.023 seconds (16.8 MBp/s) 256s Done with forward strand (410644bp). Preparing reverse complement... 256s <-> Reversing metdata. 256s Done. 256s Seq NZ_GG705055.gbk loaded. 401.02 KB 256s Sequence loading took: 0.041 seconds 256s Forward frequencies: A:28.0367% C:23.1004% G:20.9036% T:27.9593% 256s Global base frequencies: A/T:55.996% C/G:44.004% 256s Pat: 3 bases long with weight 2 256s 1 101 256s Computing hash parameters... 256s Using 4 hashbits 256s 0%......... (T -0.101 seconds) ETA: Thu Mar 21 08:30:55 2024 256s 10%......... (T -0.089 seconds) ETA: Thu Mar 21 08:30:55 2024 256s 20%......... (T -0.078 seconds) ETA: Thu Mar 21 08:30:55 2024 256s 30%......... (T -0.067 seconds) ETA: Thu Mar 21 08:30:55 2024 256s 40%......... (T -0.055 seconds) ETA: Thu Mar 21 08:30:55 2024 256s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:30:55 2024 256s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:30:55 2024 256s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:30:55 2024 257s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:30:55 2024 257s 91%........ 257s Acceptable hash function found after 1000 cycles. 257s Best uses 2/2 bases and has 0 empties from 2 inputs. 257s Score: 0.96875 (cf. worst: -4.51562) 257s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 257s Total correlation penalty: 0 257s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 257s 10 257s == 257s w[ 0]>>29: -.C 257s w[ 0]>>30: A.- 257s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 257s Ecolist (optimistic): Expcted entries per list: 17 257s Ecolist (optimistic): Minimum chunks per list: 2 257s Would take minimum 256.000000 bytes to make perfect hash. 257s Hashing 1.52 MB of sequence requires: 257s ~ linear (in seq length) hashing cost of 4.18 MB 257s ~ linear (in seq length) expected anchor cost of 37.60 MB 257s Initial hash table uses: 256 bytes (4 bits, 16 entries) 257s Expected memory usage (without anchors): 4.18 MB 257s Expected memory usage (with anchors): 41.78 MB 257s Hash parameters computed in 0.115 seconds 257s Creating storage structures: 16 entries in 256 bytes space. 257s Storage structures created in: 0.000 seconds 257s 257s Hashing NZ_GG705055.fna forwards 257s 0%......... (T -0.027 seconds) ETA: Thu Mar 21 08:30:56 2024 257s 10%......... (T -0.025 seconds) ETA: Thu Mar 21 08:30:56 2024 257s 20%......... (T -0.022 seconds) ETA: Thu Mar 21 08:30:56 2024 257s 30%......... (T -0.019 seconds) ETA: Thu Mar 21 08:30:56 2024 257s 40%......... (T -0.016 seconds) ETA: Thu Mar 21 08:30:56 2024 257s 50%......... (T -0.013 seconds) ETA: Thu Mar 21 08:30:56 2024 257s 60%......... (T -0.010 seconds) ETA: Thu Mar 21 08:30:56 2024 257s 70%......... (T -0.007 seconds) ETA: Thu Mar 21 08:30:56 2024 257s 80%......... (T -0.003 seconds) ETA: Thu Mar 21 08:30:56 2024 257s 90%......... 257s Hashing NZ_GG705055.fna backwards 258s 0%......... (T -0.030 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 10%......... (T -0.027 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 20%......... (T -0.024 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 30%......... (T -0.021 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 40%......... (T -0.018 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 50%......... (T -0.014 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 60%......... (T -0.011 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 70%......... (T -0.007 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 80%......... (T -0.004 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 90%......... 258s Hashing NZ_GG705055.gbk forwards 258s 0%......... (T -0.032 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 10%......... (T -0.029 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 20%......... (T -0.025 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 30%......... (T -0.021 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 40%......... (T -0.018 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 50%......... (T -0.014 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 60%......... (T -0.011 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 70%......... (T -0.007 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 80%......... (T -0.004 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 90%......... 258s Hashing NZ_GG705055.gbk backwards 258s 0%......... (T -0.030 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 10%......... (T -0.027 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 20%......... (T -0.024 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 30%......... (T -0.021 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 40%......... (T -0.017 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 50%......... (T -0.014 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 60%......... (T -0.010 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 70%......... (T -0.007 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 80%......... (T -0.004 seconds) ETA: Thu Mar 21 08:30:56 2024 258s 90%......... 258s Initial hashing took: 0.141 seconds 258s Extracting anchors from hash-space. 258s (T -1.515 seconds) ETA: Thu Mar 21 08:30:57 2024 258s 6%. (T -1.044 seconds) ETA: Thu Mar 21 08:30:57 2024 258s 18%. (T -1.005 seconds) ETA: Thu Mar 21 08:30:57 2024 258s 31%. (T -0.933 seconds) ETA: Thu Mar 21 08:30:57 2024 258s 43%. (T -0.741 seconds) ETA: Thu Mar 21 08:30:57 2024 258s 56%. (T -0.531 seconds) ETA: Thu Mar 21 08:30:57 2024 258s 68%. (T -0.314 seconds) ETA: Thu Mar 21 08:30:57 2024 258s 81%. (T -0.112 seconds) ETA: Thu Mar 21 08:30:57 2024 258s 93%. 258s Anchor extraction completed in: 1.579 seconds 258s Total anchors: 0 258s Anchor extraction + merge time: 1.579 seconds 258s Total processing time: 1.876 seconds 258s Writing anchors... 258s Total seeds used in anchors: 16 258s Hash performance: 258s Keys used: 16 out of 16 possible (100.00%). 258s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 258s Average pigeons per pigeon hole: 1 258s Writing 16 repeats...Output writing finished in: 0.255 seconds 258s Total time: 2.132 seconds 258s Murasaki finished! 259s PASSED MURASAKI 259s 259s Testing Genepare on NZ_GG705055.fna 259s 1001 259s PASSED GENEPARSE 259s 259s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 259s Testing mbfa on NZ_GG705055.fna 259s PASSED mbfa 259s 259s Test Murasaki on NZ_GG705056.fna 259s Verbosity level is: 0 259s Writing to: output/test 259s Pattern is: 101 259s Max usable hash bits: 27 259s Hit filter is: 0 259s Hash table type is: EcoHash 259s Hashing every: 1 base 259s Histogram detail is: 0 259s Hashing function is: 3 259s Collision profiling is: disabled 259s Repeats are: unmasked 259s Mergefilter is at: 100 259s Random seed: 1711009858 (automatic) 259s Bitscore output: on 259s Leave status records: no 259s Join neighbors is: off 259s Target memory is: 1.30 GB 259s Retain members is: true 259s Store repeatmap? yes 259s Reverse complement data is generated on the fly 259s Rifts allowed: 0 259s Fuzzy Extension: yes 259s Score by minimum pair: yes 259s Gapped anchors: no 259s Large sequence support is: enabled => seqpos is 8 bytes 259s Murasaki version 1.68.6 (LARGESEQ) 259s Loading NZ_GG705056.fna 259s Read 395160bp (385.90 KBp) in 0.018 seconds (20.6 MBp/s) 259s Done with forward strand (409732bp). Preparing reverse complement... 259s <-> Reversing metdata. 259s Done. 259s Seq NZ_GG705056.fna loaded. 400.13 KB 259s Loading NZ_GG705056.gbk 259s Read 395160bp (385.90 KBp) in 0.023 seconds (16.5 MBp/s) 259s Done with forward strand (409732bp). Preparing reverse complement... 259s <-> Reversing metdata. 259s Done. 259s Seq NZ_GG705056.gbk loaded. 400.13 KB 259s Sequence loading took: 0.041 seconds 259s Forward frequencies: A:28.3574% C:22.4405% G:20.4591% T:28.743% 259s Global base frequencies: A/T:57.1004% C/G:42.8996% 259s Pat: 3 bases long with weight 2 259s 1 101 259s Computing hash parameters... 259s Using 4 hashbits 259s 0%......... (T -0.101 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 10%......... (T -0.091 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 20%......... (T -0.078 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 30%......... (T -0.067 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 40%......... (T -0.056 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 91%........ 259s Acceptable hash function found after 1000 cycles. 259s Best uses 2/2 bases and has 0 empties from 2 inputs. 259s Score: 0.96875 (cf. worst: -4.51562) 259s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 259s Total correlation penalty: 0 259s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 259s 10 259s == 259s w[ 0]>>29: -.C 259s w[ 0]>>30: A.- 259s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 259s Ecolist (optimistic): Expcted entries per list: 17 259s Ecolist (optimistic): Minimum chunks per list: 2 259s Would take minimum 256.000000 bytes to make perfect hash. 259s Hashing 1.51 MB of sequence requires: 259s ~ linear (in seq length) hashing cost of 4.15 MB 259s ~ linear (in seq length) expected anchor cost of 37.51 MB 259s Initial hash table uses: 256 bytes (4 bits, 16 entries) 259s Expected memory usage (without anchors): 4.15 MB 259s Expected memory usage (with anchors): 41.66 MB 259s Hash parameters computed in 0.114 seconds 259s Creating storage structures: 16 entries in 256 bytes space. 259s Storage structures created in: 0.000 seconds 259s 259s Hashing NZ_GG705056.fna forwards 259s 0%......... (T -0.025 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 10%......... (T -0.024 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 20%......... (T -0.021 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 30%......... (T -0.018 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 40%......... (T -0.017 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 50%......... (T -0.013 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 60%......... (T -0.010 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 70%......... (T -0.007 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 80%......... (T -0.003 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 90%......... 259s Hashing NZ_GG705056.fna backwards 259s 0%......... (T -0.029 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 10%......... (T -0.028 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 20%......... (T -0.025 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 30%......... (T -0.022 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 40%......... (T -0.018 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 50%......... (T -0.016 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 60%......... (T -0.014 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 70%......... (T -0.010 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 80%......... (T -0.005 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 90%......... 259s Hashing NZ_GG705056.gbk forwards 259s 0%......... (T -0.064 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 10%......... (T -0.058 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 20%......... (T -0.053 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 30%......... (T -0.046 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 40%......... (T -0.038 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 50%......... (T -0.030 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 60%......... (T -0.022 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 70%......... (T -0.014 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 80%......... (T -0.007 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 90%......... 259s Hashing NZ_GG705056.gbk backwards 259s 0%......... (T -0.042 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 10%......... (T -0.034 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 20%......... (T -0.028 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 30%......... (T -0.023 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 40%......... (T -0.019 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 50%......... (T -0.015 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 60%......... (T -0.011 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 70%......... (T -0.008 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 80%......... (T -0.004 seconds) ETA: Thu Mar 21 08:30:58 2024 259s 90%......... 259s Initial hashing took: 0.200 seconds 259s Extracting anchors from hash-space. 259s (T -1.963 seconds) ETA: Thu Mar 21 08:31:00 2024 259s 6%. (T -1.410 seconds) ETA: Thu Mar 21 08:31:00 2024 259s 18%. (T -1.248 seconds) ETA: Thu Mar 21 08:31:00 2024 260s 31%. (T -0.943 seconds) ETA: Thu Mar 21 08:31:00 2024 260s 43%. (T -0.715 seconds) ETA: Thu Mar 21 08:31:00 2024 260s 56%. (T -0.512 seconds) ETA: Thu Mar 21 08:30:59 2024 260s 68%. (T -0.307 seconds) ETA: Thu Mar 21 08:31:00 2024 260s 81%. (T -0.113 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 93%. 261s Anchor extraction completed in: 1.650 seconds 261s Total anchors: 0 261s Anchor extraction + merge time: 1.651 seconds 261s Total processing time: 2.007 seconds 261s Writing anchors... 261s Total seeds used in anchors: 16 261s Hash performance: 261s Keys used: 16 out of 16 possible (100.00%). 261s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 261s Average pigeons per pigeon hole: 1 261s Writing 16 repeats...Output writing finished in: 0.283 seconds 261s Total time: 2.290 seconds 261s Murasaki finished! 261s PASSED MURASAKI 261s 261s Testing Genepare on NZ_GG705056.fna 261s 1001 261s PASSED GENEPARSE 261s 261s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 261s Testing mbfa on NZ_GG705056.fna 261s PASSED mbfa 261s 261s Test Murasaki on NZ_GG705057.fna 261s Verbosity level is: 0 261s Writing to: output/test 261s Pattern is: 101 261s Max usable hash bits: 27 261s Hit filter is: 0 261s Hash table type is: EcoHash 261s Hashing every: 1 base 261s Histogram detail is: 0 261s Hashing function is: 3 261s Collision profiling is: disabled 261s Repeats are: unmasked 261s Mergefilter is at: 100 261s Random seed: 1711009860 (automatic) 261s Bitscore output: on 261s Leave status records: no 261s Join neighbors is: off 261s Target memory is: 1.30 GB 261s Retain members is: true 261s Store repeatmap? yes 261s Reverse complement data is generated on the fly 261s Rifts allowed: 0 261s Fuzzy Extension: yes 261s Score by minimum pair: yes 261s Gapped anchors: no 261s Large sequence support is: enabled => seqpos is 8 bytes 261s Murasaki version 1.68.6 (LARGESEQ) 261s Loading NZ_GG705057.fna 261s Read 295987bp (289.05 KBp) in 0.014 seconds (20.4 MBp/s) 261s Done with forward strand (304045bp). Preparing reverse complement... 261s <-> Reversing metdata. 261s Done. 261s Seq NZ_GG705057.fna loaded. 296.92 KB 261s Loading NZ_GG705057.gbk 261s Read 295987bp (289.05 KBp) in 0.017 seconds (16.8 MBp/s) 261s Done with forward strand (304045bp). Preparing reverse complement... 261s <-> Reversing metdata. 261s Done. 261s Seq NZ_GG705057.gbk loaded. 296.92 KB 261s Sequence loading took: 0.031 seconds 261s Forward frequencies: A:28.7229% C:20.2448% G:22.7206% T:28.3117% 261s Global base frequencies: A/T:57.0346% C/G:42.9654% 261s Pat: 3 bases long with weight 2 261s 1 101 261s Computing hash parameters... 261s Using 4 hashbits 261s 0%......... (T -0.128 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 10%......... (T -0.107 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 20%......... (T -0.091 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 30%......... (T -0.079 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 40%......... (T -0.064 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 50%......... (T -0.050 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 60%......... (T -0.037 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 91%........ 261s Acceptable hash function found after 1000 cycles. 261s Best uses 2/2 bases and has 0 empties from 2 inputs. 261s Score: 0.96875 (cf. worst: -4.51562) 261s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 261s Total correlation penalty: 0 261s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 261s 10 261s == 261s w[ 0]>>29: -.C 261s w[ 0]>>30: A.- 261s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 261s Ecolist (optimistic): Expcted entries per list: 17 261s Ecolist (optimistic): Minimum chunks per list: 2 261s Would take minimum 256.000000 bytes to make perfect hash. 261s Hashing 1.13 MB of sequence requires: 261s ~ linear (in seq length) hashing cost of 3.11 MB 261s ~ linear (in seq length) expected anchor cost of 27.84 MB 261s Initial hash table uses: 256 bytes (4 bits, 16 entries) 261s Expected memory usage (without anchors): 3.11 MB 261s Expected memory usage (with anchors): 30.94 MB 261s Hash parameters computed in 0.120 seconds 261s Creating storage structures: 16 entries in 256 bytes space. 261s Storage structures created in: 0.000 seconds 261s 261s Hashing NZ_GG705057.fna forwards 261s 0%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 10%......... (T -0.019 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 20%......... (T -0.017 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 30%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 40%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 50%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 60%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 70%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 80%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 90%......... 261s Hashing NZ_GG705057.fna backwards 261s 0%......... (T -0.025 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 10%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 20%......... (T -0.019 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 30%......... (T -0.016 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 40%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 50%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 60%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 70%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 80%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 90%......... 261s Hashing NZ_GG705057.gbk forwards 261s 0%......... (T -0.026 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 10%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 20%......... (T -0.020 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 30%......... (T -0.016 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 40%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 50%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 60%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 70%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 80%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 90%......... 261s Hashing NZ_GG705057.gbk backwards 261s 0%......... (T -0.025 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 10%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 20%......... (T -0.020 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 30%......... (T -0.018 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 40%......... (T -0.015 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 50%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 60%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 70%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 80%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:00 2024 261s 90%......... 261s Initial hashing took: 0.116 seconds 261s Extracting anchors from hash-space. 261s (T -1.607 seconds) ETA: Thu Mar 21 08:31:02 2024 261s 6%. (T -1.189 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 18%. (T -0.987 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 31%dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 267s . (T -0.841 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 43%. (T -0.661 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 56%. (T -0.479 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 68%. (T -0.277 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 81%. (T -0.095 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 93%. 267s Anchor extraction completed in: 1.344 seconds 267s Total anchors: 0 267s Anchor extraction + merge time: 1.344 seconds 267s Total processing time: 1.612 seconds 267s Writing anchors... 267s Total seeds used in anchors: 16 267s Hash performance: 267s Keys used: 16 out of 16 possible (100.00%). 267s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 267s Average pigeons per pigeon hole: 1 267s Writing 16 repeats...Output writing finished in: 0.191 seconds 267s Total time: 1.803 seconds 267s Murasaki finished! 267s PASSED MURASAKI 267s 267s Testing Genepare on NZ_GG705057.fna 267s 1001 267s PASSED GENEPARSE 267s 267s Testing mbfa on NZ_GG705057.fna 267s PASSED mbfa 267s 267s Test Murasaki on NZ_GG705058.fna 267s Verbosity level is: 0 267s Writing to: output/test 267s Pattern is: 101 267s Max usable hash bits: 27 267s Hit filter is: 0 267s Hash table type is: EcoHash 267s Hashing every: 1 base 267s Histogram detail is: 0 267s Hashing function is: 3 267s Collision profiling is: disabled 267s Repeats are: unmasked 267s Mergefilter is at: 100 267s Random seed: 1711009862 (automatic) 267s Bitscore output: on 267s Leave status records: no 267s Join neighbors is: off 267s Target memory is: 1.30 GB 267s Retain members is: true 267s Store repeatmap? yes 267s Reverse complement data is generated on the fly 267s Rifts allowed: 0 267s Fuzzy Extension: yes 267s Score by minimum pair: yes 267s Gapped anchors: no 267s Large sequence support is: enabled => seqpos is 8 bytes 267s Murasaki version 1.68.6 (LARGESEQ) 267s Loading NZ_GG705058.fna 267s Read 261113bp (254.99 KBp) in 0.012 seconds (20.3 MBp/s) 267s Done with forward strand (268087bp). Preparing reverse complement... 267s <-> Reversing metdata. 267s Done. 267s Seq NZ_GG705058.fna loaded. 261.80 KB 267s Loading NZ_GG705058.gbk 267s Read 261113bp (254.99 KBp) in 0.016 seconds (15.8 MBp/s) 267s Done with forward strand (268087bp). Preparing reverse complement... 267s <-> Reversing metdata. 267s Done. 267s Seq NZ_GG705058.gbk loaded. 261.80 KB 267s Sequence loading took: 0.028 seconds 267s Forward frequencies: A:29.3149% C:19.6057% G:21.8568% T:29.2226% 267s Global base frequencies: A/T:58.5375% C/G:41.4625% 267s Pat: 3 bases long with weight 2 267s 1 101 267s Computing hash parameters... 267s Using 4 hashbits 267s 0%......... (T -0.109 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 10%......... (T -0.093 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 20%......... (T -0.082 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 30%......... (T -0.070 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 40%......... (T -0.058 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 50%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 91%........ 267s Acceptable hash function found after 1000 cycles. 267s Best uses 2/2 bases and has 0 empties from 2 inputs. 267s Score: 0.96875 (cf. worst: -4.51562) 267s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 267s Total correlation penalty: 0 267s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 267s 10 267s == 267s w[ 0]>>29: -.C 267s w[ 0]>>30: A.- 267s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 267s Ecolist (optimistic): Expcted entries per list: 16 267s Ecolist (optimistic): Minimum chunks per list: 2 267s Would take minimum 256.000000 bytes to make perfect hash. 267s Hashing 1019.97 KB of sequence requires: 267s ~ linear (in seq length) hashing cost of 2.74 MB 267s ~ linear (in seq length) expected anchor cost of 24.54 MB 267s Initial hash table uses: 256 bytes (4 bits, 16 entries) 267s Expected memory usage (without anchors): 2.74 MB 267s Expected memory usage (with anchors): 27.28 MB 267s Hash parameters computed in 0.117 seconds 267s Creating storage structures: 16 entries in 256 bytes space. 267s Storage structures created in: 0.000 seconds 267s 267s Hashing NZ_GG705058.fna forwards 267s 0%......... (T -0.017 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 10%......... (T -0.016 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 20%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 30%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 40%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 50%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 60%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 70%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 90%......... 267s Hashing NZ_GG705058.fna backwards 267s 0%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 10%......... (T -0.020 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 20%......... (T -0.017 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 30%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 40%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 50%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 60%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 70%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 90%......... 267s Hashing NZ_GG705058.gbk forwards 267s 0%......... (T -0.021 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 10%......... (T -0.018 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 20%......... (T -0.016 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 30%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 40%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 50%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 60%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 70%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 90%......... 267s Hashing NZ_GG705058.gbk backwards 267s 0%......... (T -0.025 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 10%......... (T -0.020 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 20%......... (T -0.017 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 30%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 40%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 50%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 60%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 70%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 80%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:02 2024 267s 90%......... 267s Initial hashing took: 0.096 seconds 267s Extracting anchors from hash-space. 267s (T -1.398 seconds) ETA: Thu Mar 21 08:31:03 2024 267s 6%. (T -0.984 seconds) ETA: Thu Mar 21 08:31:03 2024 267s 18%. (T -0.798 seconds) ETA: Thu Mar 21 08:31:03 2024 267s 31%. (T -0.608 seconds) ETA: Thu Mar 21 08:31:03 2024 267s 43%. (T -0.504 seconds) ETA: Thu Mar 21 08:31:03 2024 267s 56%. (T -0.337 seconds) ETA: Thu Mar 21 08:31:03 2024 267s 68%. (T -0.202 seconds) ETA: Thu Mar 21 08:31:03 2024 267s 81%. (T -0.073 seconds) ETA: Thu Mar 21 08:31:03 2024 267s 93%. 267s Anchor extraction completed in: 1.070 seconds 267s Total anchors: 0 267s Anchor extraction + merge time: 1.070 seconds 267s Total processing time: 1.313 seconds 267s Writing anchors... 267s Total seeds used in anchors: 16 267s Hash performance: 267s Keys used: 16 out of 16 possible (100.00%). 267s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 267s Average pigeons per pigeon hole: 1 267s Writing 16 repeats...Output writing finished in: 0.223 seconds 267s Total time: 1.535 seconds 267s Murasaki finished! 267s PASSED MURASAKI 267s 267s Testing Genepare on NZ_GG705058.fna 267s 1001 267s PASSED GENEPARSE 267s 267s Testing mbfa on NZ_GG705058.fna 267s PASSED mbfa 267s 267s Test Murasaki on NZ_GG705059.fna 267s Verbosity level is: 0 267s Writing to: output/test 267s Pattern is: 101 267s Max usable hash bits: 27 267s Hit filter is: 0 267s Hash table type is: EcoHash 267s Hashing every: 1 base 267s Histogram detail is: 0 267s Hashing function is: 3 267s Collision profiling is: disabled 267s Repeats are: unmasked 267s Mergefilter is at: 100 267s Random seed: 1711009863 (automatic) 267s Bitscore output: on 267s Leave status records: no 267s Join neighbors is: off 267s Target memory is: 1.30 GB 267s Retain members is: true 267s Store repeatmap? yes 267s Reverse complement data is generated on the fly 267s Rifts allowed: 0 267s Fuzzy Extension: yes 267s Score by minimum pair: yes 267s Gapped anchors: no 267s Large sequence support is: enabled => seqpos is 8 bytes 267s Murasaki version 1.68.6 (LARGESEQ) 267s Loading NZ_GG705059.fna 267s Read 254292bp (248.33 KBp) in 0.013 seconds (19.4 MBp/s) 267s Done with forward strand (263842bp). Preparing reverse complement... 267s <-> Reversing metdata. 267s Done. 267s Seq NZ_GG705059.fna loaded. 257.66 KB 267s Loading NZ_GG705059.gbk 267s Read 254292bp (248.33 KBp) in 0.017 seconds (14.0 MBp/s) 267s Done with forward strand (263842bp). Preparing reverse complement... 267s <-> Reversing metdata. 267s Done. 267s Seq NZ_GG705059.gbk loaded. 257.66 KB 267s Sequence loading took: 0.030 seconds 267s Forward frequencies: A:28.2899% C:22.6452% G:20.7128% T:28.3521% 267s Global base frequencies: A/T:56.642% C/G:43.358% 267s Pat: 3 bases long with weight 2 267s 1 101 267s Computing hash parameters... 267s Using 4 hashbits 267s 0%......... (T -0.107 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 10%......... (T -0.098 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 20%......... (T -0.085 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 30%......... (T -0.072 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 40%......... (T -0.060 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 50%......... (T -0.053 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 60%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 70%......... (T -0.030 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 80%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 91%........ 267s Acceptable hash function found after 1000 cycles. 267s Best uses 2/2 bases and has 0 empties from 2 inputs. 267s Score: 0.96875 (cf. worst: -4.51562) 267s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 267s Total correlation penalty: 0 267s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 267s 10 267s == 267s w[ 0]>>29: -.C 267s w[ 0]>>30: A.- 267s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 267s Ecolist (optimistic): Expcted entries per list: 16 267s Ecolist (optimistic): Minimum chunks per list: 2 267s Would take minimum 256.000000 bytes to make perfect hash. 267s Hashing 993.33 KB of sequence requires: 267s ~ linear (in seq length) hashing cost of 2.67 MB 267s ~ linear (in seq length) expected anchor cost of 24.16 MB 267s Initial hash table uses: 256 bytes (4 bits, 16 entries) 267s Expected memory usage (without anchors): 2.67 MB 267s Expected memory usage (with anchors): 26.82 MB 267s Hash parameters computed in 0.154 seconds 267s Creating storage structures: 16 entries in 256 bytes space. 267s Storage structures created in: 0.000 seconds 267s 267s Hashing NZ_GG705059.fna forwards 267s 0%......... (T -0.020 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 10%......... (T -0.019 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 20%......... (T -0.017 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 30%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 40%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 50%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 60%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 70%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 90%......... 267s Hashing NZ_GG705059.fna backwards 267s 0%......... (T -0.027 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 10%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 20%......... (T -0.019 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 30%......... (T -0.016 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 40%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 50%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 60%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 70%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 80%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 90%......... 267s Hashing NZ_GG705059.gbk forwards 267s 0%......... (T -0.054 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 10%......... (T -0.050 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 20%......... (T -0.040 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 30%......... (T -0.036 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 40%......... (T -0.031 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 50%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 60%......... (T -0.017 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 70%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 80%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 90%......... 267s Hashing NZ_GG705059.gbk backwards 267s 0%......... (T -0.049 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 10%......... (T -0.048 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 20%......... (T -0.042 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 30%......... (T -0.036 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 40%......... (T -0.030 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 50%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 60%......... (T -0.016 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 70%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 80%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:04 2024 267s 90%......... 267s Initial hashing took: 0.169 seconds 267s Extracting anchors from hash-space. 267s (T -0.869 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 6%. (T -0.975 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 18%. (T -0.678 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 31%. (T -0.614 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 43%. (T -0.447 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 56%. (T -0.317 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 68%. (T -0.180 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 81%. (T -0.070 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 93%. 267s Anchor extraction completed in: 0.997 seconds 267s Total anchors: 0 267s Anchor extraction + merge time: 0.997 seconds 267s Total processing time: 1.351 seconds 267s Writing anchors... 267s Total seeds used in anchors: 16 267s Hash performance: 267s Keys used: 16 out of 16 possible (100.00%). 267s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 267s Average pigeons per pigeon hole: 1 267s Writing 16 repeats...Output writing finished in: 0.164 seconds 267s Total time: 1.516 seconds 267s Murasaki finished! 267s PASSED MURASAKI 267s 267s Testing Genepare on NZ_GG705059.fna 267s 1001 267s PASSED GENEPARSE 267s 267s Testing mbfa on NZ_GG705059.fna 267s PASSED mbfa 267s 267s Test Murasaki on NZ_GG705060.fna 267s Verbosity level is: 0 267s Writing to: output/test 267s Pattern is: 101 267s Max usable hash bits: 27 267s Hit filter is: 0 267s Hash table type is: EcoHash 267s Hashing every: 1 base 267s Histogram detail is: 0 267s Hashing function is: 3 267s Collision profiling is: disabled 267s Repeats are: unmasked 267s Mergefilter is at: 100 267s Random seed: 1711009865 (automatic) 267s Bitscore output: on 267s Leave status records: no 267s Join neighbors is: off 267s Target memory is: 1.30 GB 267s Retain members is: true 267s Store repeatmap? yes 267s Reverse complement data is generated on the fly 267s Rifts allowed: 0 267s Fuzzy Extension: yes 267s Score by minimum pair: yes 267s Gapped anchors: no 267s Large sequence support is: enabled => seqpos is 8 bytes 267s Murasaki version 1.68.6 (LARGESEQ) 267s Loading NZ_GG705060.fna 267s Read 250160bp (244.30 KBp) in 0.014 seconds (17.0 MBp/s) 267s Done with forward strand (261824bp). Preparing reverse complement... 267s <-> Reversing metdata. 267s Done. 267s Seq NZ_GG705060.fna loaded. 255.69 KB 267s Loading NZ_GG705060.gbk 267s Read 250160bp (244.30 KBp) in 0.017 seconds (13.8 MBp/s) 267s Done with forward strand (261824bp). Preparing reverse complement... 267s <-> Reversing metdata. 267s Done. 267s Seq NZ_GG705060.gbk loaded. 255.69 KB 267s Sequence loading took: 0.032 seconds 267s Forward frequencies: A:28.3151% C:22.1794% G:20.8447% T:28.6609% 267s Global base frequencies: A/T:56.9759% C/G:43.0241% 267s Pat: 3 bases long with weight 2 267s 1 101 267s Computing hash parameters... 267s Using 4 hashbits 267s 0%......... (T -0.133 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 10%......... (T -0.113 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 20%......... (T -0.100 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 30%......... (T -0.090 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 40%......... (T -0.079 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 50%......... (T -0.061 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 60%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 70%......... (T -0.029 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 80%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 91%........ 267s Acceptable hash function found after 1000 cycles. 267s Best uses 2/2 bases and has 0 empties from 2 inputs. 267s Score: 0.96875 (cf. worst: -4.51562) 267s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 267s Total correlation penalty: 0 267s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 267s 10 267s == 267s w[ 0]>>29: -.C 267s w[ 0]>>30: A.- 267s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 267s Ecolist (optimistic): Expcted entries per list: 16 267s Ecolist (optimistic): Minimum chunks per list: 3 267s Would take minimum 256.000000 bytes to make perfect hash. 267s Hashing 977.19 KB of sequence requires: 267s ~ linear (in seq length) hashing cost of 2.50 MB 267s ~ linear (in seq length) expected anchor cost of 23.97 MB 267s Initial hash table uses: 256 bytes (4 bits, 16 entries) 267s Expected memory usage (without anchors): 2.51 MB 267s Expected memory usage (with anchors): 26.48 MB 267s Hash parameters computed in 0.141 seconds 267s Creating storage structures: 16 entries in 256 bytes space. 267s Storage structures created in: 0.000 seconds 267s 267s Hashing NZ_GG705060.fna forwards 267s 0%......... (T -0.017 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 10%......... (T -0.016 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 20%......... (T -0.015 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 30%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 40%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 50%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 60%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 70%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 90%......... 267s Hashing NZ_GG705060.fna backwards 267s 0%......... (T -0.028 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 10%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 20%......... (T -0.019 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 30%......... (T -0.015 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 40%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 50%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 60%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 70%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 90%......... 267s Hashing NZ_GG705060.gbk forwards 267s 0%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 10%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 20%......... (T -0.021 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 30%......... (T -0.019 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 40%......... (T -0.017 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 50%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 60%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 70%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 80%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 90%......... 267s Hashing NZ_GG705060.gbk backwards 267s 0%......... (T -0.037 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 10%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 20%......... (T -0.028 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 30%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 40%......... (T -0.019 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 50%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 60%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 70%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 80%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:05 2024 267s 90%......... 267s Initial hashing took: 0.114 seconds 267s Extracting anchors from hash-space. 267s (T -0.784 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 6%. (T -0.827 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 18%. (T -0.585 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 31%. (T -0.459 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 43%. (T -0.336 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 56%.dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 267s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 267s (T -0.245 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 68%. (T -0.139 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 81%. (T -0.056 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 93%. 267s Anchor extraction completed in: 0.787 seconds 267s Total anchors: 0 267s Anchor extraction + merge time: 0.787 seconds 267s Total processing time: 1.075 seconds 267s Writing anchors... 267s Total seeds used in anchors: 16 267s Hash performance: 267s Keys used: 16 out of 16 possible (100.00%). 267s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 267s Average pigeons per pigeon hole: 1 267s Writing 16 repeats...Output writing finished in: 0.163 seconds 267s Total time: 1.238 seconds 267s Murasaki finished! 267s PASSED MURASAKI 267s 267s Testing Genepare on NZ_GG705060.fna 267s 1001 267s PASSED GENEPARSE 267s 267s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 267s Testing mbfa on NZ_GG705060.fna 267s PASSED mbfa 267s 267s Test Murasaki on NZ_GG705061.fna 267s Verbosity level is: 0 267s Writing to: output/test 267s Pattern is: 101 267s Max usable hash bits: 27 267s Hit filter is: 0 267s Hash table type is: EcoHash 267s Hashing every: 1 base 267s Histogram detail is: 0 267s Hashing function is: 3 267s Collision profiling is: disabled 267s Repeats are: unmasked 267s Mergefilter is at: 100 267s Random seed: 1711009866 (automatic) 267s Bitscore output: on 267s Leave status records: no 267s Join neighbors is: off 267s Target memory is: 1.30 GB 267s Retain members is: true 267s Store repeatmap? yes 267s Reverse complement data is generated on the fly 267s Rifts allowed: 0 267s Fuzzy Extension: yes 267s Score by minimum pair: yes 267s Gapped anchors: no 267s Large sequence support is: enabled => seqpos is 8 bytes 267s Murasaki version 1.68.6 (LARGESEQ) 267s Loading NZ_GG705061.fna 267s Read 229103bp (223.73 KBp) in 0.011 seconds (20.4 MBp/s) 267s Done with forward strand (233240bp). Preparing reverse complement... 267s <-> Reversing metdata. 267s Done. 267s Seq NZ_GG705061.fna loaded. 227.77 KB 267s Loading NZ_GG705061.gbk 267s Read 229103bp (223.73 KBp) in 0.014 seconds (16.1 MBp/s) 267s Done with forward strand (233240bp). Preparing reverse complement... 267s <-> Reversing metdata. 267s Done. 267s Seq NZ_GG705061.gbk loaded. 227.77 KB 267s Sequence loading took: 0.025 seconds 267s Forward frequencies: A:28.2371% C:22.8212% G:21.0028% T:27.939% 267s Global base frequencies: A/T:56.176% C/G:43.824% 267s Pat: 3 bases long with weight 2 267s 1 101 267s Computing hash parameters... 267s Using 4 hashbits 267s 0%......... (T -0.099 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 10%......... (T -0.090 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 20%......... (T -0.078 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 30%......... (T -0.067 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 40%......... (T -0.056 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 91%........ 267s Acceptable hash function found after 1000 cycles. 267s Best uses 2/2 bases and has 0 empties from 2 inputs. 267s Score: 0.96875 (cf. worst: -4.51562) 267s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 267s Total correlation penalty: 0 267s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 267s 10 267s == 267s w[ 0]>>29: -.C 267s w[ 0]>>30: A.- 267s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 267s Ecolist (optimistic): Expcted entries per list: 16 267s Ecolist (optimistic): Minimum chunks per list: 3 267s Would take minimum 256.000000 bytes to make perfect hash. 267s Hashing 894.93 KB of sequence requires: 267s ~ linear (in seq length) hashing cost of 2.29 MB 267s ~ linear (in seq length) expected anchor cost of 21.35 MB 267s Initial hash table uses: 256 bytes (4 bits, 16 entries) 267s Expected memory usage (without anchors): 2.29 MB 267s Expected memory usage (with anchors): 23.65 MB 267s Hash parameters computed in 0.112 seconds 267s Creating storage structures: 16 entries in 256 bytes space. 267s Storage structures created in: 0.000 seconds 267s 267s Hashing NZ_GG705061.fna forwards 267s 0%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 10%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 20%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 30%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 40%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 50%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 60%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 70%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 90%......... 267s Hashing NZ_GG705061.fna backwards 267s 0%......... (T -0.020 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 10%......... (T -0.017 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 20%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 30%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 40%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 50%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 60%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 70%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 90%......... 267s Hashing NZ_GG705061.gbk forwards 267s 0%......... (T -0.021 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 10%......... (T -0.018 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 20%......... (T -0.015 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 30%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 40%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 50%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 60%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 70%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 90%......... 267s Hashing NZ_GG705061.gbk backwards 267s 0%......... (T -0.019 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 10%......... (T -0.019 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 20%......... (T -0.016 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 30%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 40%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 50%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 60%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 70%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:06 2024 267s 90%......... 267s Initial hashing took: 0.082 seconds 267s Extracting anchors from hash-space. 268s (T -0.827 seconds) ETA: Thu Mar 21 08:31:07 2024 268s 6%. (T -0.578 seconds) ETA: Thu Mar 21 08:31:07 2024 268s 18%. (T -0.570 seconds) ETA: Thu Mar 21 08:31:07 2024 268s 31%. (T -0.467 seconds) ETA: Thu Mar 21 08:31:07 2024 268s 43%. (T -0.381 seconds) ETA: Thu Mar 21 08:31:07 2024 268s 56%. (T -0.277 seconds) ETA: Thu Mar 21 08:31:07 2024 268s 68%. (T -0.165 seconds) ETA: Thu Mar 21 08:31:07 2024 268s 81%. (T -0.059 seconds) ETA: Thu Mar 21 08:31:07 2024 268s 93%. 268s Anchor extraction completed in: 0.831 seconds 268s Total anchors: 0 268s Anchor extraction + merge time: 0.831 seconds 268s Total processing time: 1.050 seconds 268s Writing anchors... 268s Total seeds used in anchors: 16 268s Hash performance: 268s Keys used: 16 out of 16 possible (100.00%). 268s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 268s Average pigeons per pigeon hole: 1 268s Writing 16 repeats...Output writing finished in: 0.171 seconds 268s Total time: 1.220 seconds 269s Murasaki finished! 269s PASSED MURASAKI 269s 269s Testing Genepare on NZ_GG705061.fna 269s 1001 269s PASSED GENEPARSE 269s 269s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 269s Testing mbfa on NZ_GG705061.fna 269s PASSED mbfa 269s 269s Test Murasaki on NZ_GG705062.fna 269s Verbosity level is: 0 269s Writing to: output/test 269s Pattern is: 101 269s Max usable hash bits: 27 269s Hit filter is: 0 269s Hash table type is: EcoHash 269s Hashing every: 1 base 269s Histogram detail is: 0 269s Hashing function is: 3 269s Collision profiling is: disabled 269s Repeats are: unmasked 269s Mergefilter is at: 100 269s Random seed: 1711009868 (automatic) 269s Bitscore output: on 269s Leave status records: no 269s Join neighbors is: off 269s Target memory is: 1.30 GB 269s Retain members is: true 269s Store repeatmap? yes 269s Reverse complement data is generated on the fly 269s Rifts allowed: 0 269s Fuzzy Extension: yes 269s Score by minimum pair: yes 269s Gapped anchors: no 269s Large sequence support is: enabled => seqpos is 8 bytes 269s Murasaki version 1.68.6 (LARGESEQ) 269s Loading NZ_GG705062.fna 269s Read 174324bp (170.24 KBp) in 0.008 seconds (20.0 MBp/s) 269s Done with forward strand (181688bp). Preparing reverse complement... 269s <-> Reversing metdata. 269s Done. 269s Seq NZ_GG705062.fna loaded. 177.43 KB 269s Loading NZ_GG705062.gbk 269s Read 174324bp (170.24 KBp) in 0.011 seconds (14.8 MBp/s) 269s Done with forward strand (181688bp). Preparing reverse complement... 269s <-> Reversing metdata. 269s Done. 269s Seq NZ_GG705062.gbk loaded. 177.43 KB 269s Sequence loading took: 0.020 seconds 269s Forward frequencies: A:28.8004% C:19.6749% G:21.6212% T:29.9035% 269s Global base frequencies: A/T:58.7039% C/G:41.2961% 269s Pat: 3 bases long with weight 2 269s 1 101 269s Computing hash parameters... 269s Using 4 hashbits 269s 0%......... (T -0.103 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 10%......... (T -0.091 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 20%......... (T -0.080 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 30%......... (T -0.068 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 50%......... (T -0.046 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 91%........ 269s Acceptable hash function found after 1000 cycles. 269s Best uses 2/2 bases and has 0 empties from 2 inputs. 269s Score: 0.96875 (cf. worst: -4.51562) 269s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 269s Total correlation penalty: 0 269s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 269s 10 269s == 269s w[ 0]>>29: -.C 269s w[ 0]>>30: A.- 269s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 269s Ecolist (optimistic): Expcted entries per list: 16 269s Ecolist (optimistic): Minimum chunks per list: 3 269s Would take minimum 256.000000 bytes to make perfect hash. 269s Hashing 680.95 KB of sequence requires: 269s ~ linear (in seq length) hashing cost of 1.75 MB 269s ~ linear (in seq length) expected anchor cost of 16.63 MB 269s Initial hash table uses: 256 bytes (4 bits, 16 entries) 269s Expected memory usage (without anchors): 1.75 MB 269s Expected memory usage (with anchors): 18.38 MB 269s Hash parameters computed in 0.115 seconds 269s Creating storage structures: 16 entries in 256 bytes space. 269s Storage structures created in: 0.000 seconds 269s 269s Hashing NZ_GG705062.fna forwards 269s 0%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 10%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 20%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 30%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 40%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 50%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 60%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 70%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 90%......... 269s Hashing NZ_GG705062.fna backwards 269s 0%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 10%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 20%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 30%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 40%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 50%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 60%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 70%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 90%......... 269s Hashing NZ_GG705062.gbk forwards 269s 0%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 10%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 20%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 30%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 40%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 50%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 60%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 70%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 90%......... 269s Hashing NZ_GG705062.gbk backwards 269s 0%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 10%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 20%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 30%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 40%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 50%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 60%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 70%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 90%......... 269s Initial hashing took: 0.063 seconds 269s Extracting anchors from hash-space. 269s (T -0.310 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 6%. (T -0.423 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 18%. (T -0.350 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 31%. (T -0.359 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 43%. (T -0.269 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 56%. (T -0.211 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 68%. (T -0.124 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 81%. (T -0.045 seconds) ETA: Thu Mar 21 08:31:08 2024 269s 93%. 269s Anchor extraction completed in: 0.628 seconds 269s Total anchors: 0 269s Anchor extraction + merge time: 0.628 seconds 269s Total processing time: 0.827 seconds 269s Writing anchors... 269s Total seeds used in anchors: 16 269s Hash performance: 269s Keys used: 16 out of 16 possible (100.00%). 269s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 269s Average pigeons per pigeon hole: 1 270s Writing 16 repeats...Output writing finished in: 0.127 seconds 270s Total time: 0.955 seconds 270s Murasaki finished! 270s PASSED MURASAKI 270s 270s Testing Genepare on NZ_GG705062.fna 270s 1001 270s PASSED GENEPARSE 270s 270s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 270s Testing mbfa on NZ_GG705062.fna 270s PASSED mbfa 270s 270s Test Murasaki on NZ_GG705063.fna 270s Verbosity level is: 0 270s Writing to: output/test 270s Pattern is: 101 270s Max usable hash bits: 27 270s Hit filter is: 0 270s Hash table type is: EcoHash 270s Hashing every: 1 base 270s Histogram detail is: 0 270s Hashing function is: 3 270s Collision profiling is: disabled 270s Repeats are: unmasked 270s Mergefilter is at: 100 270s Random seed: 1711009869 (automatic) 270s Bitscore output: on 270s Leave status records: no 270s Join neighbors is: off 270s Target memory is: 1.30 GB 270s Retain members is: true 270s Store repeatmap? yes 270s Reverse complement data is generated on the fly 270s Rifts allowed: 0 270s Fuzzy Extension: yes 270s Score by minimum pair: yes 270s Gapped anchors: no 270s Large sequence support is: enabled => seqpos is 8 bytes 270s Murasaki version 1.68.6 (LARGESEQ) 270s Loading NZ_GG705063.fna 270s Read 169631bp (165.66 KBp) in 0.009 seconds (17.5 MBp/s) 270s Done with forward strand (171684bp). Preparing reverse complement... 270s <-> Reversing metdata. 270s Done. 270s Seq NZ_GG705063.fna loaded. 167.66 KB 270s Loading NZ_GG705063.gbk 270s Read 169631bp (165.66 KBp) in 0.011 seconds (14.2 MBp/s) 270s Done with forward strand (171684bp). Preparing reverse complement... 270s <-> Reversing metdata. 270s Done. 270s Seq NZ_GG705063.gbk loaded. 167.66 KB 270s Sequence loading took: 0.021 seconds 270s Forward frequencies: A:27.9294% C:20.6572% G:23.2847% T:28.1287% 270s Global base frequencies: A/T:56.0581% C/G:43.9419% 270s Pat: 3 bases long with weight 2 270s 1 101 270s Computing hash parameters... 270s Using 4 hashbits 270s 0%......... (T -0.127 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 10%......... (T -0.112 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 20%......... (T -0.094 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 30%......... (T -0.078 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 40%......... (T -0.064 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 50%......... (T -0.053 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 60%......... (T -0.042 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 70%......... (T -0.028 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 80%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 91%........ 270s Acceptable hash function found after 1000 cycles. 270s Best uses 2/2 bases and has 0 empties from 2 inputs. 270s Score: 0.96875 (cf. worst: -4.51562) 270s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 270s Total correlation penalty: 0 270s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 270s 10 270s == 270s w[ 0]>>29: -.C 270s w[ 0]>>30: A.- 270s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 270s Ecolist (optimistic): Expcted entries per list: 16 270s Ecolist (optimistic): Minimum chunks per list: 3 270s Would take minimum 256.000000 bytes to make perfect hash. 270s Hashing 662.62 KB of sequence requires: 270s ~ linear (in seq length) hashing cost of 1.70 MB 270s ~ linear (in seq length) expected anchor cost of 15.72 MB 270s Initial hash table uses: 256 bytes (4 bits, 16 entries) 270s Expected memory usage (without anchors): 1.70 MB 270s Expected memory usage (with anchors): 17.42 MB 270s Hash parameters computed in 0.144 seconds 270s Creating storage structures: 16 entries in 256 bytes space. 270s Storage structures created in: 0.001 seconds 270s 270s Hashing NZ_GG705063.fna forwards 270s 0%......... (T -0.039 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 10%......... (T -0.029 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 20%......... (T -0.021 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 30%......... (T -0.018 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 40%......... (T -0.016 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 50%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 60%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 70%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 80%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 90%......... 270s Hashing NZ_GG705063.fna backwards 270s 0%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 10%......... (T -0.026 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 20%......... (T -0.021 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 30%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 40%......... (T -0.017 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 50%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 60%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 70%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 80%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 90%......... 270s Hashing NZ_GG705063.gbk forwards 270s 0%......... (T -0.018 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 10%......... (T -0.018 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 20%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 30%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 40%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 50%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 60%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 70%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 90%......... 270s Hashing NZ_GG705063.gbk backwards 270s 0%......... (T -0.016 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 10%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 20%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 30%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 40%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 50%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 60%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 70%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:09 2024 270s 90%......... 270s Initial hashing took: 0.087 seconds 270s Extracting anchors from hash-space. 270s (T -0.678 seconds) ETA: Thu Mar 21 08:31:10 2024 270s 6%. (T -0.717 seconds) ETA: Thu Mar 21 08:31:10 2024 270s 18%. (T -0.511 seconds) ETA: Thu Mar 21 08:31:10 2024 270s 31%. (T -0.426 seconds) ETA: Thu Mar 21 08:31:10 2024 270s 43%. (T -0.322 seconds) ETA: Thu Mar 21 08:31:10 2024 270s 56%. (T -0.235 seconds) ETA: Thu Mar 21 08:31:10 2024 270s 68%. (T -0.134 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 81%. (T -0.056 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 93%. 271s Anchor extraction completed in: 0.813 seconds 271s Total anchors: 0 271s Anchor extraction + merge time: 0.813 seconds 271s Total processing time: 1.067 seconds 271s Writing anchors... 271s Total seeds used in anchors: 16 271s Hash performance: 271s Keys used: 16 out of 16 possible (100.00%). 271s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 271s Average pigeons per pigeon hole: 1 271s Writing 16 repeats...Output writing finished in: 0.134 seconds 271s Total time: 1.201 seconds 271s Murasaki finished! 271s PASSED MURASAKI 271s 271s Testing Genepare on NZ_GG705063.fna 271s 1001 271s PASSED GENEPARSE 271s 271s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 271s Testing mbfa on NZ_GG705063.fna 271s PASSED mbfa 271s 271s Test Murasaki on NZ_GG705064.fna 271s Verbosity level is: 0 271s Writing to: output/test 271s Pattern is: 101 271s Max usable hash bits: 27 271s Hit filter is: 0 271s Hash table type is: EcoHash 271s Hashing every: 1 base 271s Histogram detail is: 0 271s Hashing function is: 3 271s Collision profiling is: disabled 271s Repeats are: unmasked 271s Mergefilter is at: 100 271s Random seed: 1711009870 (automatic) 271s Bitscore output: on 271s Leave status records: no 271s Join neighbors is: off 271s Target memory is: 1.30 GB 271s Retain members is: true 271s Store repeatmap? yes 271s Reverse complement data is generated on the fly 271s Rifts allowed: 0 271s Fuzzy Extension: yes 271s Score by minimum pair: yes 271s Gapped anchors: no 271s Large sequence support is: enabled => seqpos is 8 bytes 271s Murasaki version 1.68.6 (LARGESEQ) 271s Loading NZ_GG705064.fna 271s Read 165027bp (161.16 KBp) in 0.010 seconds (15.1 MBp/s) 271s Done with forward strand (167894bp). Preparing reverse complement... 271s <-> Reversing metdata. 271s Done. 271s Seq NZ_GG705064.fna loaded. 163.96 KB 271s Loading NZ_GG705064.gbk 271s Read 165027bp (161.16 KBp) in 0.013 seconds (12.3 MBp/s) 271s Done with forward strand (167894bp). Preparing reverse complement... 271s <-> Reversing metdata. 271s Done. 271s Seq NZ_GG705064.gbk loaded. 163.96 KB 271s Sequence loading took: 0.024 seconds 271s Forward frequencies: A:27.6058% C:21.1172% G:23.1338% T:28.1433% 271s Global base frequencies: A/T:55.7491% C/G:44.2509% 271s Pat: 3 bases long with weight 2 271s 1 101 271s Computing hash parameters... 271s Using 4 hashbits 271s 0%......... (T -0.155 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 10%......... (T -0.132 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 20%......... (T -0.115 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 30%......... (T -0.095 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 40%......... (T -0.074 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 50%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 60%......... (T -0.042 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 70%......... (T -0.027 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 80%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 91%........ 271s Acceptable hash function found after 1000 cycles. 271s Best uses 2/2 bases and has 0 empties from 2 inputs. 271s Score: 0.96875 (cf. worst: -4.51562) 271s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 271s Total correlation penalty: 0 271s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 271s 10 271s == 271s w[ 0]>>29: -.C 271s w[ 0]>>30: A.- 271s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 271s Ecolist (optimistic): Expcted entries per list: 16 271s Ecolist (optimistic): Minimum chunks per list: 3 271s Would take minimum 256.000000 bytes to make perfect hash. 271s Hashing 644.64 KB of sequence requires: 271s ~ linear (in seq length) hashing cost of 1.65 MB 271s ~ linear (in seq length) expected anchor cost of 15.37 MB 271s Initial hash table uses: 256 bytes (4 bits, 16 entries) 271s Expected memory usage (without anchors): 1.65 MB 271s Expected memory usage (with anchors): 17.02 MB 271s Hash parameters computed in 0.135 seconds 271s Creating storage structures: 16 entries in 256 bytes space. 271s Storage structures created in: 0.000 seconds 271s 271s Hashing NZ_GG705064.fna forwards 271s 0%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 10%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 20%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 30%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 40%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 50%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 60%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 70%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 90%......... 271s Hashing NZ_GG705064.fna backwards 271s 0%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 10%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 20%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 30%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 40%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 50%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 60%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 70%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 90%......... 271s Hashing NZ_GG705064.gbk forwards 271s 0%......... (T -0.018 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 10%......... (T -0.016 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 20%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 30%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 40%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 50%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 60%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 70%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 90%......... 271s Hashing NZ_GG705064.gbk backwards 271s 0%......... (T -0.015 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 10%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 20%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 30%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 40%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 50%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 60%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 70%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 80%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:10 2024 271s 90%......... 271s Initial hashing took: 0.063 seconds 271s Extracting anchors from hash-space. 271s (T -0.669 seconds) ETA: Thu Mar 21 08:31:11 2024 271s 6%. (T -0.633 seconds) ETA: Thu Mar 21 08:31:11 2024 271s 18%. (T -0.433 seconds) ETA: Thu Mar 21 08:31:11 2024 271s 31%. (T -0.358 seconds) ETA: Thu Mar 21 08:31:11 2024 271s 43%. (T -0.269 seconds) ETA: Thu Mar 21 08:31:11 2024 272s 56%. (T -0.201 seconds) ETA: Thu Mar 21 08:31:11 2024 272s 68%. (T -0.116 seconds) ETA: Thu Mar 21 08:31:11 2024 272s 81%. (T -0.044 seconds) ETA: Thu Mar 21 08:31:11 2024 272s 93%. 272s Anchor extraction completed in: 0.619 seconds 272s Total anchors: 0 272s Anchor extraction + merge time: 0.619 seconds 272s Total processing time: 0.842 seconds 272s Writing anchors... 272s Total seeds used in anchors: 16 272s Hash performance: 272s Keys used: 16 out of 16 possible (100.00%). 272s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 272s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.107 seconds 278s Total time: 0.950 seconds 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705064.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705064.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705065.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009871 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705065.fna 278s Read 123593bp (120.70 KBp) in 0.006 seconds (18.6 MBp/s) 278s Done with forward strand (130343bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705065.fna loaded. 127.29 KB 278s Loading NZ_GG705065.gbk 278s Read 123593bp (120.70 KBp) in 0.007 seconds (16.4 MBp/s) 278s Done with forward strand (130343bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705065.gbk loaded. 127.29 KB 278s Sequence loading took: 0.014 seconds 278s Forward frequencies: A:28.2694% C:23.0272% G:21.2504% T:27.453% 278s Global base frequencies: A/T:55.7224% C/G:44.2776% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.104 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 10%......... (T -0.096 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 20%......... (T -0.082 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 30%......... (T -0.070 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 40%......... (T -0.058 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 50%......... (T -0.046 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 15 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 482.79 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 1.18 MB 278s ~ linear (in seq length) expected anchor cost of 11.93 MB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 1.18 MB 278s Expected memory usage (with anchors): 13.11 MB 278s Hash parameters computed in 0.114 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705065.fna forwards 278s 0%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 10%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 20%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 30%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 40%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 50%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 90%......... 278s Hashing NZ_GG705065.fna backwards 278s 0%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 10%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 20%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 30%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 40%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 50%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 90%......... 278s Hashing NZ_GG705065.gbk forwards 278s 0%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 10%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 20%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 30%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 40%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 50%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 60%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 70%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 90%......... 278s Hashing NZ_GG705065.gbk backwards 278s 0%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 10%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 20%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 30%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 40%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 50%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 60%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 90%......... 278s Initial hashing took: 0.046 seconds 278s Extracting anchors from hash-space. 278s (T -0.379 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 6%. (T -0.420 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 18%. (T -0.319 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 31%. (T -0.250 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 43%. (T -0.173 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 56%. (T -0.129 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 68%. (T -0.075 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 81%. (T -0.030 seconds) ETA: Thu Mar 21 08:31:11 2024 278s 93%. 278s Anchor extraction completed in: 0.428 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.428 seconds 278s Total processing time: 0.603 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.089 seconds 278s Total time: 0.692 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705065.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705065.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705066.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009872 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705066.fna 278s Read 102039bp (99.65 KBp) in 0.005 seconds (19.6 MBp/s) 278s Done with forward strand (106208bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705066.fna loaded. 103.72 KB 278s Loading NZ_GG705066.gbk 278s Read 102039bp (99.65 KBp) in 0.006 seconds (16.5 MBp/s) 278s Done with forward strand (106208bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705066.gbk loaded. 103.72 KB 278s Sequence loading took: 0.011 seconds 278s Forward frequencies: A:29.277% C:20.206% G:22.6257% T:27.8913% 278s Global base frequencies: A/T:57.1683% C/G:42.8317% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.103 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 10%......... (T -0.089 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 20%......... (T -0.078 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 30%......... (T -0.067 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 40%......... (T -0.056 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 15 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 398.59 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 996.46 KB 278s ~ linear (in seq length) expected anchor cost of 9.72 MB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 996.71 KB 278s Expected memory usage (with anchors): 10.70 MB 278s Hash parameters computed in 0.112 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705066.fna forwards 278s 0%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 10%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 20%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 30%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 40%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 50%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 60%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 90%......... 278s Hashing NZ_GG705066.fna backwards 278s 0%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 10%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 20%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 30%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 40%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 50%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 90%......... 278s Hashing NZ_GG705066.gbk forwards 278s 0%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 10%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 20%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 30%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 40%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 50%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 90%......... 278s Hashing NZ_GG705066.gbk backwards 278s 0%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 10%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 20%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 30%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 40%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 50%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 90%......... 278s Initial hashing took: 0.036 seconds 278s Extracting anchors from hash-space. 278s (T -0.358 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 6%. (T -0.251 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 18%. (T -0.213 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 31%. (T -0.156 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 43%. (T -0.117 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 56%. (T -0.082 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 68%. (T -0.050 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 81%. (T -0.019 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 93%. 278s Anchor extraction completed in: 0.268 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.268 seconds 278s Total processing time: 0.427 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.067 seconds 278s Total time: 0.494 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705066.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705066.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705067.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009872 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705067.fna 278s Read 92138bp (89.98 KBp) in 0.005 seconds (18.8 MBp/s) 278s Done with forward strand (99840bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705067.fna loaded. 97.50 KB 278s Loading NZ_GG705067.gbk 278s Read 92138bp (89.98 KBp) in 0.006 seconds (15.9 MBp/s) 278s Done with forward strand (99840bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705067.gbk loaded. 97.50 KB 278s Sequence loading took: 0.011 seconds 278s Forward frequencies: A:28.7753% C:20.1448% G:22.0311% T:29.0488% 278s Global base frequencies: A/T:57.8241% C/G:42.1759% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.105 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 10%......... (T -0.092 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 20%......... (T -0.081 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 30%......... (T -0.069 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 15 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 359.91 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 899.79 KB 278s ~ linear (in seq length) expected anchor cost of 9.14 MB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 900.04 KB 278s Expected memory usage (with anchors): 10.02 MB 278s Hash parameters computed in 0.113 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705067.fna forwards 278s 0%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 10%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 20%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 30%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 40%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 50%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 60%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 90%......... 278s Hashing NZ_GG705067.fna backwards 278s 0%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 10%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 20%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 30%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 40%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 50%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 60%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 90%......... 278s Hashing NZ_GG705067.gbk forwards 278s 0%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 10%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 20%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 30%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 40%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 50%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 90%......... 278s Hashing NZ_GG705067.gbk backwards 278s 0%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 10%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 20%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 30%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 40%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 50%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 60%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:12 2024 278s 90%......... 278s Initial hashing took: 0.034 seconds 278s Extracting anchors from hash-space. 278s (T -0.325 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 6%. (T -0.227 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 18%. (T -0.191 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 31%. (T -0.140 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 43%. (T -0.106 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 56%. (T -0.075 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 68%. (T -0.046 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 81%. (T -0.018 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 93%. 278s Anchor extraction completed in: 0.268 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.268 seconds 278s Total processing time: 0.425 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.088 seconds 278s Total time: 0.513 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705067.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705067.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705068.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009873 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705068.fna 278s Read 74802bp (73.05 KBp) in 0.005 seconds (13.0 MBp/s) 278s Done with forward strand (85653bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705068.fna loaded. 83.65 KB 278s Loading NZ_GG705068.gbk 278s Read 74802bp (73.05 KBp) in 0.007 seconds (9.9 MBp/s) 278s Done with forward strand (85653bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705068.gbk loaded. 83.65 KB 278s Sequence loading took: 0.013 seconds 278s Forward frequencies: A:30.0326% C:20.0289% G:19.2147% T:30.7238% 278s Global base frequencies: A/T:60.7564% C/G:39.2436% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.144 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 10%......... (T -0.129 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 20%......... (T -0.113 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 30%......... (T -0.105 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 40%......... (T -0.085 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 50%......... (T -0.064 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 60%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 70%......... (T -0.031 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 80%......... (T -0.014 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 15 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 292.20 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 730.49 KB 278s ~ linear (in seq length) expected anchor cost of 7.84 MB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 730.74 KB 278s Expected memory usage (with anchors): 8.56 MB 278s Hash parameters computed in 0.149 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705068.fna forwards 278s 0%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 10%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 20%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 30%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 40%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 50%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 90%......... 278s Hashing NZ_GG705068.fna backwards 278s 0%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 10%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 20%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 30%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 40%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 50%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 90%......... 278s Hashing NZ_GG705068.gbk forwards 278s 0%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 10%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 20%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 30%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 40%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 50%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 90%......... 278s Hashing NZ_GG705068.gbk backwards 278s 0%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 10%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 20%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 30%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 40%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 50%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 90%......... 278s Initial hashing took: 0.035 seconds 278s Extracting anchors from hash-space. 278s (T -0.241 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 6%. (T -0.153 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 18%. (T -0.159 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 31%. (T -0.134 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 43%. (T -0.115 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 56%. (T -0.084 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 68%. (T -0.051 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 81%. (T -0.019 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 93%. 278s Anchor extraction completed in: 0.269 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.269 seconds 278s Total processing time: 0.467 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.080 seconds 278s Total time: 0.546 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705068.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705068.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705069.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009873 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705069.fna 278s Read 49931bp (48.76 KBp) in 0.003 seconds (16.5 MBp/s) 278s Done with forward strand (54571bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705069.fna loaded. 53.29 KB 278s Loading NZ_GG705069.gbk 278s Read 49931bp (48.76 KBp) in 0.003 seconds (15.5 MBp/s) 278s Done with forward strand (54571bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705069.gbk loaded. 53.29 KB 278s Sequence loading took: 0.006 seconds 278s Forward frequencies: A:27.7563% C:21.4616% G:21.8221% T:28.96% 278s Global base frequencies: A/T:56.7163% C/G:43.2837% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.116 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 10%......... (T -0.094 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 20%......... (T -0.081 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 30%......... (T -0.069 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 14 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 195.04 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 463.22 KB 278s ~ linear (in seq length) expected anchor cost of 5.00 MB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 463.47 KB 278s Expected memory usage (with anchors): 5.45 MB 278s Hash parameters computed in 0.114 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705069.fna forwards 278s 0%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 10%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 20%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 30%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 40%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 60%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 90%......... 278s Hashing NZ_GG705069.fna backwards 278s 0%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 10%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 20%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 30%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 40%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 60%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 90%......... 278s Hashing NZ_GG705069.gbk forwards 278s 0%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 10%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 20%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 30%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 40%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 60%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 90%......... 278s Hashing NZ_GG705069.gbk backwards 278s 0%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 10%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 20%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 30%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 40%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 60%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:13 2024 278s 90%......... 278s Initial hashing took: 0.023 seconds 278s Extracting anchors from hash-space. 278s (T -0.155 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 6%. (T -0.103 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 18%. (T -0.100 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 31%. (T -0.084 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 43%. (T -0.070 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 56%. (T -0.051 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 68%. (T -0.031 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 81%. (T -0.011 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 93%. 278s Anchor extraction completed in: 0.154 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.154 seconds 278s Total processing time: 0.298 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.030 seconds 278s Total time: 0.329 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705069.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705069.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705070.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009874 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705070.fna 278s Read 51237bp (50.04 KBp) in 0.003 seconds (19.2 MBp/s) 278s Done with forward strand (53557bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705070.fna loaded. 52.30 KB 278s Loading NZ_GG705070.gbk 278s Read 51237bp (50.04 KBp) in 0.003 seconds (16.9 MBp/s) 278s Done with forward strand (53557bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705070.gbk loaded. 52.30 KB 278s Sequence loading took: 0.006 seconds 278s Forward frequencies: A:30.0915% C:19.7416% G:21.1527% T:29.0142% 278s Global base frequencies: A/T:59.1057% C/G:40.8943% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.104 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 10%......... (T -0.094 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 20%......... (T -0.081 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 30%......... (T -0.069 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 50%......... (T -0.046 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 14 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 200.14 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 475.33 KB 278s ~ linear (in seq length) expected anchor cost of 4.90 MB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 475.58 KB 278s Expected memory usage (with anchors): 5.37 MB 278s Hash parameters computed in 0.113 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705070.fna forwards 278s 0%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 10%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 90%......... 278s Hashing NZ_GG705070.fna backwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 90%......... 278s Hashing NZ_GG705070.gbk forwards 278s 0%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 10%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 20%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 30%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 40%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 50%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 60%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 90%......... 278s Hashing NZ_GG705070.gbk backwards 278s 0%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 10%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 20%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 30%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 40%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 60%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 90%......... 278s Initial hashing took: 0.019 seconds 278s Extracting anchors from hash-space. 278s (T -0.078 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 6%. (T -0.112 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 18%. (T -0.090 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 31%. (T -0.096 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 43%. (T -0.071 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 56%. (T -0.055 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 68%. (T -0.032 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 81%. (T -0.012 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 93%. 278s Anchor extraction completed in: 0.160 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.160 seconds 278s Total processing time: 0.299 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.032 seconds 278s Total time: 0.330 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705070.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705070.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705071.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009874 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705071.fna 278s Read 48160bp (47.03 KBp) in 0.003 seconds (16.5 MBp/s) 278s Done with forward strand (49526bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705071.fna loaded. 48.37 KB 278s Loading NZ_GG705071.gbk 278s Read 48160bp (47.03 KBp) in 0.004 seconds (11.1 MBp/s) 278s Done with forward strand (49526bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705071.gbk loaded. 48.37 KB 278s Sequence loading took: 0.007 seconds 278s Forward frequencies: A:33.2766% C:16.8958% G:18.0731% T:31.7546% 278s Global base frequencies: A/T:65.0311% C/G:34.9689% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.138 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 10%......... (T -0.122 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 20%......... (T -0.104 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 30%......... (T -0.088 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 40%......... (T -0.071 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 50%......... (T -0.056 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 60%......... (T -0.041 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 70%......... (T -0.027 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 80%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 14 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 188.12 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 446.80 KB 278s ~ linear (in seq length) expected anchor cost of 4.53 MB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 447.05 KB 278s Expected memory usage (with anchors): 4.97 MB 278s Hash parameters computed in 0.139 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705071.fna forwards 278s 0%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 10%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 20%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 30%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 40%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 60%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 90%......... 278s Hashing NZ_GG705071.fna backwards 278s 0%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 10%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 20%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 30%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 40%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 50%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 90%......... 278s Hashing NZ_GG705071.gbk forwards 278s 0%......... (T -0.009 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 10%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 20%......... (T -0.008 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 30%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 40%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 50%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 90%......... 278s Hashing NZ_GG705071.gbk backwards 278s 0%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 10%......... (T -0.007 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 20%......... (T -0.006 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 30%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 40%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 50%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 60%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 70%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 80%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 90%......... 278s Initial hashing took: 0.032 seconds 278s Extracting anchors from hash-space. 278s (T -0.108 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 6%. (T -0.178 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 18%. (T -0.132 seconds) ETA: Thu Mar 21 08:31:14 2024 278s 31%. (T -0.162 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 43%. (T -0.120 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 56%. (T -0.095 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 68%. (T -0.052 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 81%. (T -0.018 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 93%. 278s Anchor extraction completed in: 0.247 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.247 seconds 278s Total processing time: 0.426 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.030 seconds 278s Total time: 0.456 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705071.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705071.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705072.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009875 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705072.fna 278s Read 25963bp (25.35 KBp) in 0.002 seconds (14.4 MBp/s) 278s Done with forward strand (35758bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705072.fna loaded. 34.92 KB 278s Loading NZ_GG705072.gbk 278s Read 25963bp (25.35 KBp) in 0.002 seconds (12.2 MBp/s) 278s Done with forward strand (35758bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705072.gbk loaded. 34.92 KB 278s Sequence loading took: 0.004 seconds 278s Forward frequencies: A:29.6422% C:19.6742% G:18.2259% T:32.4577% 278s Global base frequencies: A/T:62.0999% C/G:37.9001% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.098 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.107 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.099 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.089 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.081 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.062 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.029 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 13 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 101.42 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 240.86 KB 278s ~ linear (in seq length) expected anchor cost of 3.27 MB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 241.11 KB 278s Expected memory usage (with anchors): 3.51 MB 278s Hash parameters computed in 0.139 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705072.fna forwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 90%......... 278s Hashing NZ_GG705072.fna backwards 278s 0%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 90%......... 278s Hashing NZ_GG705072.gbk forwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 90%......... 278s Hashing NZ_GG705072.gbk backwards 278s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 90%......... 278s Initial hashing took: 0.069 seconds 278s Extracting anchors from hash-space. 278s (T -0.031 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 6%. (T -0.046 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 18%. (T -0.040 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 31%. (T -0.047 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 43%. (T -0.036 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 56%. (T -0.028 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 68%. (T -0.016 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 81%. (T -0.006 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 93%. 278s Anchor extraction completed in: 0.079 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.079 seconds 278s Total processing time: 0.291 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.016 seconds 278s Total time: 0.307 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705072.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705072.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705073.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009875 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705073.fna 278s Read 29370bp (28.68 KBp) in 0.002 seconds (16.0 MBp/s) 278s Done with forward strand (32703bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705073.fna loaded. 31.94 KB 278s Loading NZ_GG705073.gbk 278s Read 29370bp (28.68 KBp) in 0.002 seconds (15.5 MBp/s) 278s Done with forward strand (32703bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705073.gbk loaded. 31.94 KB 278s Sequence loading took: 0.004 seconds 278s Forward frequencies: A:31.0964% C:18.2635% G:17.6166% T:33.0235% 278s Global base frequencies: A/T:64.1199% C/G:35.8801% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.099 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.089 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.077 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.066 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.055 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 16 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 13 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 114.73 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 258.13 KB 278s ~ linear (in seq length) expected anchor cost of 2.99 MB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 258.38 KB 278s Expected memory usage (with anchors): 3.25 MB 278s Hash parameters computed in 0.110 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705073.fna forwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 90%......... 278s Hashing NZ_GG705073.fna backwards 278s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 90%......... 278s Hashing NZ_GG705073.gbk forwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 90%......... 278s Hashing NZ_GG705073.gbk backwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 90%......... 278s Initial hashing took: 0.012 seconds 278s Extracting anchors from hash-space. 278s (T -0.034 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 6%. (T -0.051 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 18%. (T -0.043 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 31%. (T -0.050 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 43%. (T -0.037 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 56%. (T -0.031 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 68%. (T -0.017 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 81%. (T -0.006 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 93%. 278s Anchor extraction completed in: 0.085 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.085 seconds 278s Total processing time: 0.210 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.018 seconds 278s Total time: 0.228 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705073.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705073.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705074.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009875 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705074.fna 278s Read 27463bp (26.82 KBp) in 0.001 seconds (18.2 MBp/s) 278s Done with forward strand (27739bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705074.fna loaded. 27.09 KB 278s Loading NZ_GG705074.gbk 278s Read 27463bp (26.82 KBp) in 0.002 seconds (16.1 MBp/s) 278s Done with forward strand (27739bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705074.gbk loaded. 27.09 KB 278s Sequence loading took: 0.003 seconds 278s Forward frequencies: A:29.7418% C:22.6122% G:19.164% T:28.482% 278s Global base frequencies: A/T:58.2238% C/G:41.7762% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.103 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.090 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.078 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.066 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.055 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 16 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 13 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 107.28 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 241.37 KB 278s ~ linear (in seq length) expected anchor cost of 2.54 MB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 241.62 KB 278s Expected memory usage (with anchors): 2.78 MB 278s Hash parameters computed in 0.110 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705074.fna forwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 90%......... 278s Hashing NZ_GG705074.fna backwards 278s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 90%......... 278s Hashing NZ_GG705074.gbk forwards 278s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 90%......... 278s Hashing NZ_GG705074.gbk backwards 278s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 90%......... 278s Initial hashing took: 0.015 seconds 278s Extracting anchors from hash-space. 278s (T -0.037 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 6%. (T -0.049 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 18%. (T -0.044 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 31%. (T -0.044 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 43%. (T -0.033 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 56%. (T -0.027 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 68%. (T -0.015 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 81%. (T -0.006 seconds) ETA: Thu Mar 21 08:31:15 2024 278s 93%. 278s Anchor extraction completed in: 0.078 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.078 seconds 278s Total processing time: 0.207 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.016 seconds 278s Total time: 0.223 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705074.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705074.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705075.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009875 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705075.fna 278s Read 10982bp (10.72 KBp) in 0.001 seconds (14.5 MBp/s) 278s Done with forward strand (12466bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705075.fna loaded. 12.17 KB 278s Loading NZ_GG705075.gbk 278s Read 10982bp (10.72 KBp) in 0.001 seconds (13.7 MBp/s) 278s Done with forward strand (12466bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705075.gbk loaded. 12.17 KB 278s Sequence loading took: 0.002 seconds 278s Forward frequencies: A:32.1526% C:18.9765% G:18.4484% T:30.4225% 278s Global base frequencies: A/T:62.5751% C/G:37.4249% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.098 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.088 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.077 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.066 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.055 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 12 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 42.90 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 91.16 KB 278s ~ linear (in seq length) expected anchor cost of 1.14 MB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 91.41 KB 278s Expected memory usage (with anchors): 1.23 MB 278s Hash parameters computed in 0.110 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705075.fna forwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705075.fna backwards 278s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705075.gbk forwards 278s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705075.gbk backwards 278s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Initial hashing took: 0.011 seconds 278s Extracting anchors from hash-space. 278s (T -0.013 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 6%. (T -0.018 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 18%. (T -0.015 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 31%. (T -0.017 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 43%. (T -0.012 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 56%. (T -0.010 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 68%. (T -0.006 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 81%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 93%. 278s Anchor extraction completed in: 0.029 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.029 seconds 278s Total processing time: 0.152 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.007 seconds 278s Total time: 0.158 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705075.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705075.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705076.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009876 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705076.fna 278s Read 9733bp (9.50 KBp) in 0.001 seconds (13.9 MBp/s) 278s Done with forward strand (9753bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705076.fna loaded. 9.52 KB 278s Loading NZ_GG705076.gbk 278s Read 9733bp (9.50 KBp) in 0.001 seconds (14.5 MBp/s) 278s Done with forward strand (9753bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705076.gbk loaded. 9.52 KB 278s Sequence loading took: 0.002 seconds 278s Forward frequencies: A:30.114% C:17.3122% G:17.2917% T:35.282% 278s Global base frequencies: A/T:65.3961% C/G:34.6039% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.100 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.089 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.077 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.066 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.054 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.043 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 12 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 38.02 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 80.78 KB 278s ~ linear (in seq length) expected anchor cost of 914.34 KB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 81.03 KB 278s Expected memory usage (with anchors): 995.38 KB 278s Hash parameters computed in 0.109 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705076.fna forwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705076.fna backwards 278s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705076.gbk forwards 278s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705076.gbk backwards 278s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Initial hashing took: 0.007 seconds 278s Extracting anchors from hash-space. 278s (T -0.021 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 6%. (T -0.012 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 18%. (T -0.015 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 31%. (T -0.013 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 43%. (T -0.012 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 56%. (T -0.009 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 68%. (T -0.005 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 81%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 93%. 278s Anchor extraction completed in: 0.025 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.025 seconds 278s Total processing time: 0.143 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.006 seconds 278s Total time: 0.149 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705076.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705076.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705077.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009876 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705077.fna 278s Read 9579bp (9.35 KBp) in 0.001 seconds (14.1 MBp/s) 278s Done with forward strand (9752bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705077.fna loaded. 9.52 KB 278s Loading NZ_GG705077.gbk 278s Read 9579bp (9.35 KBp) in 0.001 seconds (14.2 MBp/s) 278s Done with forward strand (9752bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705077.gbk loaded. 9.52 KB 278s Sequence loading took: 0.002 seconds 278s Forward frequencies: A:31.0366% C:19.2713% G:18.2169% T:31.4751% 278s Global base frequencies: A/T:62.5117% C/G:37.4883% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.107 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.092 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.080 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.068 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.056 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 12 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 37.42 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 79.50 KB 278s ~ linear (in seq length) expected anchor cost of 914.25 KB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 79.75 KB 278s Expected memory usage (with anchors): 994.00 KB 278s Hash parameters computed in 0.111 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705077.fna forwards 278s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705077.fna backwards 278s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705077.gbk forwards 278s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705077.gbk backwards 278s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Initial hashing took: 0.009 seconds 278s Extracting anchors from hash-space. 278s (T -0.027 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 6%. (T -0.016 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 18%. (T -0.016 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 31%. (T -0.014 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 43%. (T -0.012 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 56%. (T -0.009 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 68%. (T -0.005 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 81%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 93%. 278s Anchor extraction completed in: 0.026 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.026 seconds 278s Total processing time: 0.148 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.006 seconds 278s Total time: 0.154 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705077.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705077.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705078.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009876 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705078.fna 278s Read 9549bp (9.33 KBp) in 0.001 seconds (12.5 MBp/s) 278s Done with forward strand (9578bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705078.fna loaded. 9.35 KB 278s Loading NZ_GG705078.gbk 278s Read 9549bp (9.33 KBp) in 0.001 seconds (12.3 MBp/s) 278s Done with forward strand (9578bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705078.gbk loaded. 9.35 KB 278s Sequence loading took: 0.002 seconds 278s Forward frequencies: A:29.6366% C:18.8816% G:17.583% T:33.8988% 278s Global base frequencies: A/T:63.5354% C/G:36.4646% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.104 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.094 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.081 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.069 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.046 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 12 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 37.30 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 79.26 KB 278s ~ linear (in seq length) expected anchor cost of 897.94 KB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 79.51 KB 278s Expected memory usage (with anchors): 977.44 KB 278s Hash parameters computed in 0.114 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705078.fna forwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705078.fna backwards 278s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705078.gbk forwards 278s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705078.gbk backwards 278s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Initial hashing took: 0.009 seconds 278s Extracting anchors from hash-space. 278s (T -0.024 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 6%. (T -0.014 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 18%. (T -0.015 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 31%. (T -0.013 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 43%. (T -0.012 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 56%. (T -0.009 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 68%. (T -0.005 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 81%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 93%. 278s Anchor extraction completed in: 0.025 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.025 seconds 278s Total processing time: 0.150 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.006 seconds 278s Total time: 0.156 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705078.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705078.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705079.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009876 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705079.fna 278s Read 7815bp (7.63 KBp) in 0.001 seconds (10.8 MBp/s) 278s Done with forward strand (9392bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705079.fna loaded. 9.17 KB 278s Loading NZ_GG705079.gbk 278s Read 7815bp (7.63 KBp) in 0.001 seconds (8.7 MBp/s) 278s Done with forward strand (9392bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705079.gbk loaded. 9.17 KB 278s Sequence loading took: 0.002 seconds 278s Forward frequencies: A:32.1433% C:19.1555% G:17.3512% T:31.35% 278s Global base frequencies: A/T:63.4933% C/G:36.5067% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.115 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.100 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.086 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.072 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.060 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 11 278s Ecolist (optimistic): Minimum chunks per list: 3 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 30.53 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 64.86 KB 278s ~ linear (in seq length) expected anchor cost of 880.50 KB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 65.11 KB 278s Expected memory usage (with anchors): 945.61 KB 278s Hash parameters computed in 0.115 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705079.fna forwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705079.fna backwards 278s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705079.gbk forwards 278s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Hashing NZ_GG705079.gbk backwards 278s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 90%......... 278s Initial hashing took: 0.007 seconds 278s Extracting anchors from hash-space. 278s (T -0.016 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 6%. (T -0.010 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 18%. (T -0.011 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 31%. (T -0.010 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 43%. (T -0.009 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 56%. (T -0.006 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 68%. (T -0.004 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 81%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:16 2024 278s 93%. 278s Anchor extraction completed in: 0.020 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.020 seconds 278s Total processing time: 0.144 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.005 seconds 278s Total time: 0.149 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705079.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705079.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705080.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009876 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705080.fna 278s Read 6711bp (6.55 KBp) in 0.001 seconds (12.3 MBp/s) 278s Done with forward strand (6711bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705080.fna loaded. 6.55 KB 278s Loading NZ_GG705080.gbk 278s Read 6711bp (6.55 KBp) in 0.001 seconds (12.6 MBp/s) 278s Done with forward strand (6711bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705080.gbk loaded. 6.55 KB 278s Sequence loading took: 0.001 seconds 278s Forward frequencies: A:28.3415% C:19.4308% G:19.5202% T:32.7075% 278s Global base frequencies: A/T:61.049% C/G:38.951% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.109 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.096 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.082 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.070 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.058 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.046 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 11 278s Ecolist (optimistic): Minimum chunks per list: 4 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 26.21 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 52.42 KB 278s ~ linear (in seq length) expected anchor cost of 629.16 KB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 52.67 KB 278s Expected memory usage (with anchors): 681.83 KB 278s Hash parameters computed in 0.115 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705080.fna forwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705080.fna backwards 278s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705080.gbk forwards 278s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705080.gbk backwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Initial hashing took: 0.010 seconds 278s Extracting anchors from hash-space. 278s (T -0.014 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 6%. (T -0.009 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 18%. (T -0.011 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 31%. (T -0.010 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 43%. (T -0.009 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 56%. (T -0.006 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 68%. (T -0.004 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 81%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 93%. 278s Anchor extraction completed in: 0.018 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.018 seconds 278s Total processing time: 0.145 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.008 seconds 278s Total time: 0.153 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705080.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705080.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705081.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009877 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705081.fna 278s Read 6691bp (6.53 KBp) in 0.001 seconds (12.0 MBp/s) 278s Done with forward strand (6691bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705081.fna loaded. 6.53 KB 278s Loading NZ_GG705081.gbk 278s Read 6691bp (6.53 KBp) in 0.001 seconds (12.6 MBp/s) 278s Done with forward strand (6691bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705081.gbk loaded. 6.53 KB 278s Sequence loading took: 0.001 seconds 278s Forward frequencies: A:31.1314% C:16.8286% G:17.6057% T:34.4343% 278s Global base frequencies: A/T:65.5657% C/G:34.4343% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.101 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.091 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.079 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.068 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 11 278s Ecolist (optimistic): Minimum chunks per list: 4 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 26.14 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 52.27 KB 278s ~ linear (in seq length) expected anchor cost of 627.28 KB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 52.52 KB 278s Expected memory usage (with anchors): 679.80 KB 278s Hash parameters computed in 0.111 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705081.fna forwards 278s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705081.fna backwards 278s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705081.gbk forwards 278s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705081.gbk backwards 278s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Initial hashing took: 0.011 seconds 278s Extracting anchors from hash-space. 278s (T -0.007 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 6%. (T -0.012 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 18%. (T -0.009 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 31%. (T -0.010 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 43%. (T -0.007 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 56%. (T -0.006 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 68%. (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 81%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 93%. 278s Anchor extraction completed in: 0.017 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.017 seconds 278s Total processing time: 0.140 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.004 seconds 278s Total time: 0.144 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705081.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705081.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705082.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009877 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705082.fna 278s Read 6008bp (5.87 KBp) in 0.000 seconds (12.1 MBp/s) 278s Done with forward strand (6008bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705082.fna loaded. 5.87 KB 278s Loading NZ_GG705082.gbk 278s Read 6008bp (5.87 KBp) in 0.000 seconds (13.0 MBp/s) 278s Done with forward strand (6008bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705082.gbk loaded. 5.87 KB 278s Sequence loading took: 0.001 seconds 278s Forward frequencies: A:33.0892% C:18.1591% G:17.6265% T:31.1252% 278s Global base frequencies: A/T:64.2144% C/G:35.7856% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.101 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.088 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.076 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.065 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.054 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 11 278s Ecolist (optimistic): Minimum chunks per list: 4 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 23.47 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 46.94 KB 278s ~ linear (in seq length) expected anchor cost of 563.25 KB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 47.19 KB 278s Expected memory usage (with anchors): 610.44 KB 278s Hash parameters computed in 0.112 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705082.fna forwards 278s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705082.fna backwards 278s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705082.gbk forwards 278s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705082.gbk backwards 278s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Initial hashing took: 0.006 seconds 278s Extracting anchors from hash-space. 278s (T -0.007 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 6%. (T -0.010 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 18%. (T -0.007 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 31%. (T -0.009 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 43%. (T -0.007 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 56%. (T -0.006 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 68%. (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 81%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 93%. 278s Anchor extraction completed in: 0.016 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.016 seconds 278s Total processing time: 0.135 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.004 seconds 278s Total time: 0.139 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705082.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705082.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705083.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009877 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705083.fna 278s Read 5476bp (5.35 KBp) in 0.001 seconds (8.4 MBp/s) 278s Done with forward strand (5476bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705083.fna loaded. 5.35 KB 278s Loading NZ_GG705083.gbk 278s Read 5476bp (5.35 KBp) in 0.001 seconds (8.9 MBp/s) 278s Done with forward strand (5476bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705083.gbk loaded. 5.35 KB 278s Sequence loading took: 0.002 seconds 278s Forward frequencies: A:28.7071% C:18.6815% G:17.7137% T:34.8977% 278s Global base frequencies: A/T:63.6048% C/G:36.3952% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.110 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.093 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.080 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.069 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 11 278s Ecolist (optimistic): Minimum chunks per list: 4 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 21.39 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 42.78 KB 278s ~ linear (in seq length) expected anchor cost of 513.38 KB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 43.03 KB 278s Expected memory usage (with anchors): 556.41 KB 278s Hash parameters computed in 0.111 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705083.fna forwards 278s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705083.fna backwards 278s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705083.gbk forwards 278s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705083.gbk backwards 278s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Initial hashing took: 0.010 seconds 278s Extracting anchors from hash-space. 278s (T -0.006 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 6%. (T -0.009 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 18%. (T -0.006 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 31%. (T -0.008 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 43%. (T -0.006 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 56%. (T -0.005 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 68%. (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 81%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 93%. 278s Anchor extraction completed in: 0.013 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.013 seconds 278s Total processing time: 0.136 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.003 seconds 278s Total time: 0.140 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705083.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705083.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705084.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009877 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705084.fna 278s Read 5223bp (5.10 KBp) in 0.000 seconds (10.2 MBp/s) 278s Done with forward strand (5223bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705084.fna loaded. 5.10 KB 278s Loading NZ_GG705084.gbk 278s Read 5223bp (5.10 KBp) in 0.000 seconds (11.0 MBp/s) 278s Done with forward strand (5223bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705084.gbk loaded. 5.10 KB 278s Sequence loading took: 0.001 seconds 278s Forward frequencies: A:27.8384% C:19.7588% G:16.906% T:35.4968% 278s Global base frequencies: A/T:63.3352% C/G:36.6648% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.105 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.091 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.078 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.067 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.055 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 91%........ 278s Acceptable hash function found after 1000 cycles. 278s Best uses 2/2 bases and has 0 empties from 2 inputs. 278s Score: 0.96875 (cf. worst: -4.51562) 278s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 278s Total correlation penalty: 0 278s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 278s 10 278s == 278s w[ 0]>>29: -.C 278s w[ 0]>>30: A.- 278s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 278s Ecolist (optimistic): Expcted entries per list: 11 278s Ecolist (optimistic): Minimum chunks per list: 4 278s Would take minimum 256.000000 bytes to make perfect hash. 278s Hashing 20.40 KB of sequence requires: 278s ~ linear (in seq length) hashing cost of 40.80 KB 278s ~ linear (in seq length) expected anchor cost of 489.66 KB 278s Initial hash table uses: 256 bytes (4 bits, 16 entries) 278s Expected memory usage (without anchors): 41.05 KB 278s Expected memory usage (with anchors): 530.70 KB 278s Hash parameters computed in 0.110 seconds 278s Creating storage structures: 16 entries in 256 bytes space. 278s Storage structures created in: 0.000 seconds 278s 278s Hashing NZ_GG705084.fna forwards 278s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705084.fna backwards 278s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705084.gbk forwards 278s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Hashing NZ_GG705084.gbk backwards 278s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 90%......... 278s Initial hashing took: 0.009 seconds 278s Extracting anchors from hash-space. 278s (T -0.008 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 6%. (T -0.014 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 18%. (T -0.010 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 31%. (T -0.009 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 43%. (T -0.007 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 56%. (T -0.005 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 68%. (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 81%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 93%. 278s Anchor extraction completed in: 0.015 seconds 278s Total anchors: 0 278s Anchor extraction + merge time: 0.015 seconds 278s Total processing time: 0.135 seconds 278s Writing anchors... 278s Total seeds used in anchors: 16 278s Hash performance: 278s Keys used: 16 out of 16 possible (100.00%). 278s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 278s Average pigeons per pigeon hole: 1 278s Writing 16 repeats...Output writing finished in: 0.003 seconds 278s Total time: 0.138 seconds 278s Murasaki finished! 278s PASSED MURASAKI 278s 278s Testing Genepare on NZ_GG705084.fna 278s 1001 278s PASSED GENEPARSE 278s 278s Testing mbfa on NZ_GG705084.fna 278s PASSED mbfa 278s 278s Test Murasaki on NZ_GG705085.fna 278s Verbosity level is: 0 278s Writing to: output/test 278s Pattern is: 101 278s Max usable hash bits: 27 278s Hit filter is: 0 278s Hash table type is: EcoHash 278s Hashing every: 1 base 278s Histogram detail is: 0 278s Hashing function is: 3 278s Collision profiling is: disabled 278s Repeats are: unmasked 278s Mergefilter is at: 100 278s Random seed: 1711009877 (automatic) 278s Bitscore output: on 278s Leave status records: no 278s Join neighbors is: off 278s Target memory is: 1.30 GB 278s Retain members is: true 278s Store repeatmap? yes 278s Reverse complement data is generated on the fly 278s Rifts allowed: 0 278s Fuzzy Extension: yes 278s Score by minimum pair: yes 278s Gapped anchors: no 278s Large sequence support is: enabled => seqpos is 8 bytes 278s Murasaki version 1.68.6 (LARGESEQ) 278s Loading NZ_GG705085.fna 278s Read 4549bp (4.44 KBp) in 0.001 seconds (6.2 MBp/s) 278s Done with forward strand (5055bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705085.fna loaded. 4.94 KB 278s Loading NZ_GG705085.gbk 278s Read 4549bp (4.44 KBp) in 0.001 seconds (7.1 MBp/s) 278s Done with forward strand (5055bp). Preparing reverse complement... 278s <-> Reversing metdata. 278s Done. 278s Seq NZ_GG705085.gbk loaded. 4.94 KB 278s Sequence loading took: 0.001 seconds 278s Forward frequencies: A:26.6212% C:21.1255% G:30.0286% T:22.2247% 278s Global base frequencies: A/T:48.8459% C/G:51.1541% 278s Pat: 3 bases long with weight 2 278s 1 101 278s Computing hash parameters... 278s Using 4 hashbits 278s 0%......... (T -0.110 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 10%......... (T -0.096 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 20%......... (T -0.093 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 30%......... (T -0.080 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 40%......... (T -0.066 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 50%......... (T -0.053 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 60%......... (T -0.039 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 70%......... (T -0.026 seconds) ETA: Thu Mar 21 08:31:17 2024 278s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 91%........ 279s Acceptable hash function found after 1000 cycles. 279s Best uses 2/2 bases and has 0 empties from 2 inputs. 279s Score: 0.96875 (cf. worst: -4.51562) 279s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 279s Total correlation penalty: 0 279s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 279s 10 279s == 279s w[ 0]>>29: -.C 279s w[ 0]>>30: A.- 279s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 279s Ecolist (optimistic): Expcted entries per list: 11 279s Ecolist (optimistic): Minimum chunks per list: 4 279s Would take minimum 256.000000 bytes to make perfect hash. 279s Hashing 17.77 KB of sequence requires: 279s ~ linear (in seq length) hashing cost of 35.53 KB 279s ~ linear (in seq length) expected anchor cost of 473.91 KB 279s Initial hash table uses: 256 bytes (4 bits, 16 entries) 279s Expected memory usage (without anchors): 35.78 KB 279s Expected memory usage (with anchors): 509.69 KB 279s Hash parameters computed in 0.126 seconds 279s Creating storage structures: 16 entries in 256 bytes space. 279s Storage structures created in: 0.000 seconds 279s 279s Hashing NZ_GG705085.fna forwards 279s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 90%......... 279s Hashing NZ_GG705085.fna backwards 279s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 90%......... 279s Hashing NZ_GG705085.gbk forwards 279s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 90%......... 279s Hashing NZ_GG705085.gbk backwards 279s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 90%......... 279s Initial hashing took: 0.010 seconds 279s Extracting anchors from hash-space. 279s (T -0.011 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 6%. (T -0.010 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 18%. (T -0.008 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 31%. (T -0.006 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 43%. (T -0.005 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 56%. (T -0.003 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 68%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 81%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:17 2024 279s 93%. 279s Anchor extraction completed in: 0.012 seconds 279s Total anchors: 0 279s Anchor extraction + merge time: 0.012 seconds 279s Total processing time: 0.149 seconds 279s Writing anchors... 279s Total seeds used in anchors: 16 279s Hash performance: 279s Keys used: 16 out of 16 possible (100.00%). 279s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 279s Average pigeons per pigeon hole: 1 279s Writing 16 repeats...Output writing finished in: 0.003 seconds 279s Total time: 0.152 seconds 279s Murasaki finished! 279s PASSED MURASAKI 279s 279s Testing Genepare on NZ_GG705085.fna 279s 1001 279s PASSED GENEPARSE 279s 279s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 279s Testing mbfa on NZ_GG705085.fna 279s PASSED mbfa 279s 279s Test Murasaki on NZ_GG705086.fna 279s Verbosity level is: 0 279s Writing to: output/test 279s Pattern is: 101 279s Max usable hash bits: 27 279s Hit filter is: 0 279s Hash table type is: EcoHash 279s Hashing every: 1 base 279s Histogram detail is: 0 279s Hashing function is: 3 279s Collision profiling is: disabled 279s Repeats are: unmasked 279s Mergefilter is at: 100 279s Random seed: 1711009878 (automatic) 279s Bitscore output: on 279s Leave status records: no 279s Join neighbors is: off 279s Target memory is: 1.30 GB 279s Retain members is: true 279s Store repeatmap? yes 279s Reverse complement data is generated on the fly 279s Rifts allowed: 0 279s Fuzzy Extension: yes 279s Score by minimum pair: yes 279s Gapped anchors: no 279s Large sequence support is: enabled => seqpos is 8 bytes 279s Murasaki version 1.68.6 (LARGESEQ) 279s Loading NZ_GG705086.fna 279s Read 4868bp (4.75 KBp) in 0.000 seconds (10.0 MBp/s) 279s Done with forward strand (4868bp). Preparing reverse complement... 279s <-> Reversing metdata. 279s Done. 279s Seq NZ_GG705086.fna loaded. 4.75 KB 279s Loading NZ_GG705086.gbk 279s Read 4868bp (4.75 KBp) in 0.000 seconds (9.5 MBp/s) 279s Done with forward strand (4868bp). Preparing reverse complement... 279s <-> Reversing metdata. 279s Done. 279s Seq NZ_GG705086.gbk loaded. 4.75 KB 279s Sequence loading took: 0.001 seconds 279s Forward frequencies: A:26.9104% C:22.5349% G:22.4938% T:28.0608% 279s Global base frequencies: A/T:54.9712% C/G:45.0288% 279s Pat: 3 bases long with weight 2 279s 1 101 279s Computing hash parameters... 279s Using 4 hashbits 279s 0%......... (T -0.107 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.095 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.084 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.071 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.059 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 91%........ 279s Acceptable hash function found after 1000 cycles. 279s Best uses 2/2 bases and has 0 empties from 2 inputs. 279s Score: 0.96875 (cf. worst: -4.51562) 279s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 279s Total correlation penalty: 0 279s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 279s 10 279s == 279s w[ 0]>>29: -.C 279s w[ 0]>>30: A.- 279s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 279s Ecolist (optimistic): Expcted entries per list: 11 279s Ecolist (optimistic): Minimum chunks per list: 4 279s Would take minimum 256.000000 bytes to make perfect hash. 279s Hashing 19.02 KB of sequence requires: 279s ~ linear (in seq length) hashing cost of 38.03 KB 279s ~ linear (in seq length) expected anchor cost of 456.38 KB 279s Initial hash table uses: 256 bytes (4 bits, 16 entries) 279s Expected memory usage (without anchors): 38.28 KB 279s Expected memory usage (with anchors): 494.66 KB 279s Hash parameters computed in 0.116 seconds 279s Creating storage structures: 16 entries in 256 bytes space. 279s Storage structures created in: 0.000 seconds 279s 279s Hashing NZ_GG705086.fna forwards 279s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705086.fna backwards 279s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705086.gbk forwards 279s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705086.gbk backwards 279s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Initial hashing took: 0.007 seconds 279s Extracting anchors from hash-space. 279s (T -0.010 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 6%. (T -0.010 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 18%. (T -0.007 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 31%. (T -0.007 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 43%. (T -0.005 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 56%. (T -0.004 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 68%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 81%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 93%. 279s Anchor extraction completed in: 0.012 seconds 279s Total anchors: 0 279s Anchor extraction + merge time: 0.012 seconds 279s Total processing time: 0.136 seconds 279s Writing anchors... 279s Total seeds used in anchors: 16 279s Hash performance: 279s Keys used: 16 out of 16 possible (100.00%). 279s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 279s Average pigeons per pigeon hole: 1 279s Writing 16 repeats...Output writing finished in: 0.004 seconds 279s Total time: 0.140 seconds 279s Murasaki finished! 279s PASSED MURASAKI 279s 279s Testing Genepare on NZ_GG705086.fna 279s 1001 279s PASSED GENEPARSE 279s 279s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 279s Testing mbfa on NZ_GG705086.fna 279s PASSED mbfa 279s 279s Test Murasaki on NZ_GG705087.fna 279s Verbosity level is: 0 279s Writing to: output/test 279s Pattern is: 101 279s Max usable hash bits: 27 279s Hit filter is: 0 279s Hash table type is: EcoHash 279s Hashing every: 1 base 279s Histogram detail is: 0 279s Hashing function is: 3 279s Collision profiling is: disabled 279s Repeats are: unmasked 279s Mergefilter is at: 100 279s Random seed: 1711009878 (automatic) 279s Bitscore output: on 279s Leave status records: no 279s Join neighbors is: off 279s Target memory is: 1.30 GB 279s Retain members is: true 279s Store repeatmap? yes 279s Reverse complement data is generated on the fly 279s Rifts allowed: 0 279s Fuzzy Extension: yes 279s Score by minimum pair: yes 279s Gapped anchors: no 279s Large sequence support is: enabled => seqpos is 8 bytes 279s Murasaki version 1.68.6 (LARGESEQ) 279s Loading NZ_GG705087.fna 279s Read 4863bp (4.75 KBp) in 0.000 seconds (10.2 MBp/s) 279s Done with forward strand (4863bp). Preparing reverse complement... 279s <-> Reversing metdata. 279s Done. 279s Seq NZ_GG705087.fna loaded. 4.75 KB 279s Loading NZ_GG705087.gbk 279s Read 4863bp (4.75 KBp) in 0.000 seconds (10.8 MBp/s) 279s Done with forward strand (4863bp). Preparing reverse complement... 279s <-> Reversing metdata. 279s Done. 279s Seq NZ_GG705087.gbk loaded. 4.75 KB 279s Sequence loading took: 0.001 seconds 279s Forward frequencies: A:34.0119% C:17.4378% G:19.2679% T:29.2823% 279s Global base frequencies: A/T:63.2943% C/G:36.7057% 279s Pat: 3 bases long with weight 2 279s 1 101 279s Computing hash parameters... 279s Using 4 hashbits 279s 0%......... (T -0.099 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.090 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.078 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.066 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.055 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 91%........ 279s Acceptable hash function found after 1000 cycles. 279s Best uses 2/2 bases and has 0 empties from 2 inputs. 279s Score: 0.96875 (cf. worst: -4.51562) 279s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 279s Total correlation penalty: 0 279s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 279s 10 279s == 279s w[ 0]>>29: -.C 279s w[ 0]>>30: A.- 279s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 279s Ecolist (optimistic): Expcted entries per list: 11 279s Ecolist (optimistic): Minimum chunks per list: 4 279s Would take minimum 256.000000 bytes to make perfect hash. 279s Hashing 19.00 KB of sequence requires: 279s ~ linear (in seq length) hashing cost of 37.98 KB 279s ~ linear (in seq length) expected anchor cost of 455.91 KB 279s Initial hash table uses: 256 bytes (4 bits, 16 entries) 279s Expected memory usage (without anchors): 38.23 KB 279s Expected memory usage (with anchors): 494.14 KB 279s Hash parameters computed in 0.110 seconds 279s Creating storage structures: 16 entries in 256 bytes space. 279s Storage structures created in: 0.000 seconds 279s 279s Hashing NZ_GG705087.fna forwards 279s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705087.fna backwards 279s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705087.gbk forwards 279s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705087.gbk backwards 279s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Initial hashing took: 0.003 seconds 279s Extracting anchors from hash-space. 279s (T -0.006 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 6%. (T -0.008 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 18%. (T -0.006 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 31%. (T -0.007 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 43%. (T -0.005 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 56%. (T -0.004 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 68%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 81%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 93%. 279s Anchor extraction completed in: 0.012 seconds 279s Total anchors: 0 279s Anchor extraction + merge time: 0.012 seconds 279s Total processing time: 0.126 seconds 279s Writing anchors... 279s Total seeds used in anchors: 16 279s Hash performance: 279s Keys used: 16 out of 16 possible (100.00%). 279s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 279s Average pigeons per pigeon hole: 1 279s Writing 16 repeats...Output writing finished in: 0.003 seconds 279s Total time: 0.130 seconds 279s Murasaki finished! 279s PASSED MURASAKI 279s 279s Testing Genepare on NZ_GG705087.fna 279s 1001 279s PASSED GENEPARSE 279s 279s Testing mbfa on NZ_GG705087.fna 279s PASSED mbfa 279s 279s Test Murasaki on NZ_GG705088.fna 279s Verbosity level is: 0 279s Writing to: output/test 279s Pattern is: 101 279s Max usable hash bits: 27 279s Hit filter is: 0 279s Hash table type is: EcoHash 279s Hashing every: 1 base 279s Histogram detail is: 0 279s Hashing function is: 3 279s Collision profiling is: disabled 279s Repeats are: unmasked 279s Mergefilter is at: 100 279s Random seed: 1711009878 (automatic) 279s Bitscore output: on 279s Leave status records: no 279s Join neighbors is: off 279s Target memory is: 1.30 GB 279s Retain members is: true 279s Store repeatmap? yes 279s Reverse complement data is generated on the fly 279s Rifts allowed: 0 279s Fuzzy Extension: yes 279s Score by minimum pair: yes 279s Gapped anchors: no 279s Large sequence support is: enabled => seqpos is 8 bytes 279s Murasaki version 1.68.6 (LARGESEQ) 279s Loading NZ_GG705088.fna 279s Read 2146bp (2.10 KBp) in 0.000 seconds (4.4 MBp/s) 279s Done with forward strand (2146bp). Preparing reverse complement... 279s <-> Reversing metdata. 279s Done. 279s Seq NZ_GG705088.fna loaded. 2.10 KB 279s Loading NZ_GG705088.gbk 279s Read 2146bp (2.10 KBp) in 0.000 seconds (4.3 MBp/s) 279s Done with forward strand (2146bp). Preparing reverse complement... 279s <-> Reversing metdata. 279s Done. 279s Seq NZ_GG705088.gbk loaded. 2.10 KB 279s Sequence loading took: 0.001 seconds 279s Forward frequencies: A:27.4464% C:18.1733% G:20.876% T:33.5042% 279s Global base frequencies: A/T:60.9506% C/G:39.0494% 279s Pat: 3 bases long with weight 2 279s 1 101 279s Computing hash parameters... 279s Using 4 hashbits 279s 0%......... (T -0.102 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.092 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.081 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%.........dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 279s (T -0.069 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 91%........ 279s Acceptable hash function found after 1000 cycles. 279s Best uses 2/2 bases and has 0 empties from 2 inputs. 279s Score: 0.96875 (cf. worst: -4.51562) 279s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 279s Total correlation penalty: 0 279s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 279s 10 279s == 279s w[ 0]>>29: -.C 279s w[ 0]>>30: A.- 279s Ecolist (optimistic): (seqbits: 2 idxbits: 13 minBlocks: 1 initblocks: 1) 279s Ecolist (optimistic): Expcted entries per list: 10 279s Ecolist (optimistic): Minimum chunks per list: 4 279s Would take minimum 256.000000 bytes to make perfect hash. 279s Hashing 8.38 KB of sequence requires: 279s ~ linear (in seq length) hashing cost of 15.72 KB 279s ~ linear (in seq length) expected anchor cost of 201.19 KB 279s Initial hash table uses: 256 bytes (4 bits, 16 entries) 279s Expected memory usage (without anchors): 15.97 KB 279s Expected memory usage (with anchors): 217.16 KB 279s Hash parameters computed in 0.113 seconds 279s Creating storage structures: 16 entries in 256 bytes space. 279s Storage structures created in: 0.000 seconds 279s 279s Hashing NZ_GG705088.fna forwards 279s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705088.fna backwards 279s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705088.gbk forwards 279s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705088.gbk backwards 279s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Initial hashing took: 0.005 seconds 279s Extracting anchors from hash-space. 279s (T -0.005 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 6%. (T -0.004 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 18%. (T -0.003 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 31%. (T -0.003 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 43%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 56%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 68%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 93%. 279s Anchor extraction completed in: 0.005 seconds 279s Total anchors: 0 279s Anchor extraction + merge time: 0.005 seconds 279s Total processing time: 0.125 seconds 279s Writing anchors... 279s Total seeds used in anchors: 16 279s Hash performance: 279s Keys used: 16 out of 16 possible (100.00%). 279s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 279s Average pigeons per pigeon hole: 1 279s Writing 16 repeats...Output writing finished in: 0.001 seconds 279s Total time: 0.126 seconds 279s Murasaki finished! 279s PASSED MURASAKI 279s 279s Testing Genepare on NZ_GG705088.fna 279s 1001 279s PASSED GENEPARSE 279s 279s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 279s Testing mbfa on NZ_GG705088.fna 279s PASSED mbfa 279s 279s Test Murasaki on NZ_GG705089.fna 279s Verbosity level is: 0 279s Writing to: output/test 279s Pattern is: 101 279s Max usable hash bits: 27 279s Hit filter is: 0 279s Hash table type is: EcoHash 279s Hashing every: 1 base 279s Histogram detail is: 0 279s Hashing function is: 3 279s Collision profiling is: disabled 279s Repeats are: unmasked 279s Mergefilter is at: 100 279s Random seed: 1711009878 (automatic) 279s Bitscore output: on 279s Leave status records: no 279s Join neighbors is: off 279s Target memory is: 1.30 GB 279s Retain members is: true 279s Store repeatmap? yes 279s Reverse complement data is generated on the fly 279s Rifts allowed: 0 279s Fuzzy Extension: yes 279s Score by minimum pair: yes 279s Gapped anchors: no 279s Large sequence support is: enabled => seqpos is 8 bytes 279s Murasaki version 1.68.6 (LARGESEQ) 279s Loading NZ_GG705089.fna 279s Read 1396bp (1.36 KBp) in 0.000 seconds (4.4 MBp/s) 279s Done with forward strand (1396bp). Preparing reverse complement... 279s <-> Reversing metdata. 279s Done. 279s Seq NZ_GG705089.fna loaded. 1.36 KB 279s Loading NZ_GG705089.gbk 279s Read 1396bp (1.36 KBp) in 0.000 seconds (6.6 MBp/s) 279s Done with forward strand (1396bp). Preparing reverse complement... 279s <-> Reversing metdata. 279s Done. 279s Seq NZ_GG705089.gbk loaded. 1.36 KB 279s Sequence loading took: 0.001 seconds 279s Forward frequencies: A:33.4527% C:18.0516% G:19.8424% T:28.6533% 279s Global base frequencies: A/T:62.106% C/G:37.894% 279s Pat: 3 bases long with weight 2 279s 1 101 279s Computing hash parameters... 279s Using 4 hashbits 279s 0%......... (T -0.101 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.090 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.078 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.068 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.056 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 91%........ 279s Acceptable hash function found after 1000 cycles. 279s Best uses 2/2 bases and has 0 empties from 2 inputs. 279s Score: 0.96875 (cf. worst: -4.51562) 279s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 279s Total correlation penalty: 0 279s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 279s 10 279s == 279s w[ 0]>>29: -.C 279s w[ 0]>>30: A.- 279s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 279s Ecolist (optimistic): Expcted entries per list: 9 279s Ecolist (optimistic): Minimum chunks per list: 4 279s Would take minimum 256.000000 bytes to make perfect hash. 279s Hashing 5.45 KB of sequence requires: 279s ~ linear (in seq length) hashing cost of 9.54 KB 279s ~ linear (in seq length) expected anchor cost of 130.88 KB 279s Initial hash table uses: 256 bytes (4 bits, 16 entries) 279s Expected memory usage (without anchors): 9.79 KB 279s Expected memory usage (with anchors): 140.67 KB 279s Hash parameters computed in 0.111 seconds 279s Creating storage structures: 16 entries in 256 bytes space. 279s Storage structures created in: 0.000 seconds 279s 279s Hashing NZ_GG705089.fna forwards 279s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705089.fna backwards 279s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705089.gbk forwards 279s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705089.gbk backwards 279s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Initial hashing took: 0.004 seconds 279s Extracting anchors from hash-space. 279s (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 31%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 68%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 93%. 279s Anchor extraction completed in: 0.003 seconds 279s Total anchors: 0 279s Anchor extraction + merge time: 0.003 seconds 279s Total processing time: 0.118 seconds 279s Writing anchors... 279s Total seeds used in anchors: 16 279s Hash performance: 279s Keys used: 16 out of 16 possible (100.00%). 279s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 279s Average pigeons per pigeon hole: 1 279s Writing 16 repeats...Output writing finished in: 0.001 seconds 279s Total time: 0.119 seconds 279s Murasaki finished! 279s PASSED MURASAKI 279s 279s Testing Genepare on NZ_GG705089.fna 279s 397 279s PASSED GENEPARSE 279s 279s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 279s Testing mbfa on NZ_GG705089.fna 279s PASSED mbfa 279s 279s Test Murasaki on NZ_GG705090.fna 279s Verbosity level is: 0 279s Writing to: output/test 279s Pattern is: 101 279s Max usable hash bits: 27 279s Hit filter is: 0 279s Hash table type is: EcoHash 279s Hashing every: 1 base 279s Histogram detail is: 0 279s Hashing function is: 3 279s Collision profiling is: disabled 279s Repeats are: unmasked 279s Mergefilter is at: 100 279s Random seed: 1711009878 (automatic) 279s Bitscore output: on 279s Leave status records: no 279s Join neighbors is: off 279s Target memory is: 1.30 GB 279s Retain members is: true 279s Store repeatmap? yes 279s Reverse complement data is generated on the fly 279s Rifts allowed: 0 279s Fuzzy Extension: yes 279s Score by minimum pair: yes 279s Gapped anchors: no 279s Large sequence support is: enabled => seqpos is 8 bytes 279s Murasaki version 1.68.6 (LARGESEQ) 279s Loading NZ_GG705090.fna 279s Read 1374bp (1.34 KBp) in 0.000 seconds (4.1 MBp/s) 279s Done with forward strand (1374bp). Preparing reverse complement... 279s <-> Reversing metdata. 279s Done. 279s Seq NZ_GG705090.fna loaded. 1.34 KB 279s Loading NZ_GG705090.gbk 279s Read 1374bp (1.34 KBp) in 0.000 seconds (5.4 MBp/s) 279s Done with forward strand (1374bp). Preparing reverse complement... 279s <-> Reversing metdata. 279s Done. 279s Seq NZ_GG705090.gbk loaded. 1.34 KB 279s Sequence loading took: 0.001 seconds 279s Forward frequencies: A:29.6215% C:22.7802% G:22.6346% T:24.9636% 279s Global base frequencies: A/T:54.5852% C/G:45.4148% 279s Pat: 3 bases long with weight 2 279s 1 101 279s Computing hash parameters... 279s Using 4 hashbits 279s 0%......... (T -0.115 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.102 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.087 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.075 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.061 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.049 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.036 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 91%........ 279s Acceptable hash function found after 1000 cycles. 279s Best uses 2/2 bases and has 0 empties from 2 inputs. 279s Score: 0.96875 (cf. worst: -4.51562) 279s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 279s Total correlation penalty: 0 279s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 279s 10 279s == 279s w[ 0]>>29: -.C 279s w[ 0]>>30: A.- 279s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 279s Ecolist (optimistic): Expcted entries per list: 9 279s Ecolist (optimistic): Minimum chunks per list: 4 279s Would take minimum 256.000000 bytes to make perfect hash. 279s Hashing 5.37 KB of sequence requires: 279s ~ linear (in seq length) hashing cost of 9.39 KB 279s ~ linear (in seq length) expected anchor cost of 128.81 KB 279s Initial hash table uses: 256 bytes (4 bits, 16 entries) 279s Expected memory usage (without anchors): 9.64 KB 279s Expected memory usage (with anchors): 138.46 KB 279s Hash parameters computed in 0.119 seconds 279s Creating storage structures: 16 entries in 256 bytes space. 279s Storage structures created in: 0.000 seconds 279s 279s Hashing NZ_GG705090.fna forwards 279s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705090.fna backwards 279s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705090.gbk forwards 279s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Hashing NZ_GG705090.gbk backwards 279s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 90%......... 279s Initial hashing took: 0.003 seconds 279s Extracting anchors from hash-space. 279s (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 18%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 31%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 68%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 93%. 279s Anchor extraction completed in: 0.003 seconds 279s Total anchors: 0 279s Anchor extraction + merge time: 0.003 seconds 279s Total processing time: 0.126 seconds 279s Writing anchors... 279s Total seeds used in anchors: 16 279s Hash performance: 279s Keys used: 16 out of 16 possible (100.00%). 279s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 279s Average pigeons per pigeon hole: 1 279s Writing 16 repeats...Output writing finished in: 0.001 seconds 279s Total time: 0.127 seconds 279s Murasaki finished! 279s PASSED MURASAKI 279s 279s Testing Genepare on NZ_GG705090.fna 279s 375 279s PASSED GENEPARSE 279s 279s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 279s Testing mbfa on NZ_GG705090.fna 279s PASSED mbfa 279s 279s Test Murasaki on NZ_GG705091.fna 279s Verbosity level is: 0 279s Writing to: output/test 279s Pattern is: 101 279s Max usable hash bits: 27 279s Hit filter is: 0 279s Hash table type is: EcoHash 279s Hashing every: 1 base 279s Histogram detail is: 0 279s Hashing function is: 3 279s Collision profiling is: disabled 279s Repeats are: unmasked 279s Mergefilter is at: 100 279s Random seed: 1711009878 (automatic) 279s Bitscore output: on 279s Leave status records: no 279s Join neighbors is: off 279s Target memory is: 1.30 GB 279s Retain members is: true 279s Store repeatmap? yes 279s Reverse complement data is generated on the fly 279s Rifts allowed: 0 279s Fuzzy Extension: yes 279s Score by minimum pair: yes 279s Gapped anchors: no 279s Large sequence support is: enabled => seqpos is 8 bytes 279s Murasaki version 1.68.6 (LARGESEQ) 279s Loading NZ_GG705091.fna 279s Read 1318bp (1.29 KBp) in 0.000 seconds (4.5 MBp/s) 279s Done with forward strand (1318bp). Preparing reverse complement... 279s <-> Reversing metdata. 279s Done. 279s Seq NZ_GG705091.fna loaded. 1.29 KB 279s Loading NZ_GG705091.gbk 279s Read 1318bp (1.29 KBp) in 0.000 seconds (6.1 MBp/s) 279s Done with forward strand (1318bp). Preparing reverse complement... 279s <-> Reversing metdata. 279s Done. 279s Seq NZ_GG705091.gbk loaded. 1.29 KB 279s Sequence loading took: 0.001 seconds 279s Forward frequencies: A:29.742% C:23.8998% G:22.1548% T:24.2033% 279s Global base frequencies: A/T:53.9454% C/G:46.0546% 279s Pat: 3 bases long with weight 2 279s 1 101 279s Computing hash parameters... 279s Using 4 hashbits 279s 0%......... (T -0.100 seconds) ETA: Thu Mar 21 08:31:18 2024 279s 10%......... (T -0.092 seconds) ETA: Thu Mar 21 08:31:19 2024 279s 20%......... (T -0.082 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s ... (T -0.071 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.059 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 9 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 5.15 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 9.01 KB 286s ~ linear (in seq length) expected anchor cost of 123.56 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 9.26 KB 286s Expected memory usage (with anchors): 132.82 KB 286s Hash parameters computed in 0.118 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705091.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Hashing NZ_GG705091.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Hashing NZ_GG705091.gbk forwards 286s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Hashing NZ_GG705091.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Initial hashing took: 0.004 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 18%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 31%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 93%. 286s Anchor extraction completed in: 0.003 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.003 seconds 286s Total processing time: 0.125 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.126 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705091.fna 286s 319 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705091.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705092.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009879 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705092.fna 286s Read 1283bp (1.25 KBp) in 0.000 seconds (4.2 MBp/s) 286s Done with forward strand (1283bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705092.fna loaded. 1.25 KB 286s Loading NZ_GG705092.gbk 286s Read 1283bp (1.25 KBp) in 0.000 seconds (5.4 MBp/s) 286s Done with forward strand (1283bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705092.gbk loaded. 1.25 KB 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:23.6945% C:21.0444% G:25.3313% T:29.9299% 286s Global base frequencies: A/T:53.6243% C/G:46.3757% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.105 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.094 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.083 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.071 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.059 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 9 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 5.01 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 8.76 KB 286s ~ linear (in seq length) expected anchor cost of 120.28 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 9.01 KB 286s Expected memory usage (with anchors): 129.29 KB 286s Hash parameters computed in 0.117 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705092.fna forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Hashing NZ_GG705092.fna backwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Hashing NZ_GG705092.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Hashing NZ_GG705092.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Initial hashing took: 0.005 seconds 286s Extracting anchors from hash-space. 286s (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 18%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 31%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 68%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 93%. 286s Anchor extraction completed in: 0.003 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.003 seconds 286s Total processing time: 0.126 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.127 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705092.fna 286s 284 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705092.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705093.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009879 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705093.fna 286s Read 1180bp (1.15 KBp) in 0.001 seconds (2.2 MBp/s) 286s Done with forward strand (1180bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705093.fna loaded. 1.15 KB 286s Loading NZ_GG705093.gbk 286s Read 1180bp (1.15 KBp) in 0.000 seconds (4.6 MBp/s) 286s Done with forward strand (1180bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705093.gbk loaded. 1.15 KB 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:31.9492% C:16.1017% G:19.8305% T:32.1186% 286s Global base frequencies: A/T:64.0678% C/G:35.9322% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.108 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.100 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.085 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.071 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.060 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.048 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.036 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 9 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 4.61 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 8.07 KB 286s ~ linear (in seq length) expected anchor cost of 110.62 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 8.32 KB 286s Expected memory usage (with anchors): 118.94 KB 286s Hash parameters computed in 0.120 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705093.fna forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Hashing NZ_GG705093.fna backwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Hashing NZ_GG705093.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Hashing NZ_GG705093.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Initial hashing took: 0.002 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 68%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 93%. 286s Anchor extraction completed in: 0.003 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.003 seconds 286s Total processing time: 0.126 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.128 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705093.fna 286s 181 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705093.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705094.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009879 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705094.fna 286s Read 1153bp (1.13 KBp) in 0.000 seconds (3.8 MBp/s) 286s Done with forward strand (1153bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705094.fna loaded. 1.13 KB 286s Loading NZ_GG705094.gbk 286s Read 1153bp (1.13 KBp) in 0.000 seconds (4.7 MBp/s) 286s Done with forward strand (1153bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705094.gbk loaded. 1.13 KB 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:27.8404% C:21.4224% G:19.7745% T:30.9627% 286s Global base frequencies: A/T:58.8031% C/G:41.1969% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.117 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.104 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.088 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.075 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.062 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.049 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.037 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 9 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 4.50 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 7.88 KB 286s ~ linear (in seq length) expected anchor cost of 108.09 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 8.12 KB 286s Expected memory usage (with anchors): 116.22 KB 286s Hash parameters computed in 0.126 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705094.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%........ 286s Hashing NZ_GG705094.fna backwards 286s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%........ 286s Hashing NZ_GG705094.gbk forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%........ 286s Hashing NZ_GG705094.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%........ 286s Initial hashing took: 0.010 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 6%. (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 18%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 31%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 43%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 68%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 93%. 286s Anchor extraction completed in: 0.004 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.004 seconds 286s Total processing time: 0.141 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.143 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705094.fna 286s 154 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705094.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705095.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009879 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705095.fna 286s Read 1093bp (1.07 KBp) in 0.000 seconds (2.9 MBp/s) 286s Done with forward strand (1093bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705095.fna loaded. 1.07 KB 286s Loading NZ_GG705095.gbk 286s Read 1093bp (1.07 KBp) in 0.000 seconds (4.7 MBp/s) 286s Done with forward strand (1093bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705095.gbk loaded. 1.07 KB 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:33.1199% C:16.8344% G:21.043% T:29.0027% 286s Global base frequencies: A/T:62.1226% C/G:37.8774% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.105 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.092 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.080 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.067 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.056 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 9 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 4.27 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 7.46 KB 286s ~ linear (in seq length) expected anchor cost of 102.47 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 7.71 KB 286s Expected memory usage (with anchors): 110.18 KB 286s Hash parameters computed in 0.112 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705095.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Hashing NZ_GG705095.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Hashing NZ_GG705095.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Hashing NZ_GG705095.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%......... 286s Initial hashing took: 0.003 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.119 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.120 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705095.fna 286s 94 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705095.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705096.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009879 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705096.fna 286s Read 1046bp (1.02 KBp) in 0.000 seconds (3.4 MBp/s) 286s Done with forward strand (1046bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705096.fna loaded. 1.02 KB 286s Loading NZ_GG705096.gbk 286s Read 1046bp (1.02 KBp) in 0.000 seconds (4.3 MBp/s) 286s Done with forward strand (1046bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705096.gbk loaded. 1.02 KB 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:30.8795% C:24.4742% G:20.9369% T:23.7094% 286s Global base frequencies: A/T:54.5889% C/G:45.4111% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.106 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.097 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.083 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.071 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.059 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 9 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 4.09 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 7.15 KB 286s ~ linear (in seq length) expected anchor cost of 98.06 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 7.40 KB 286s Expected memory usage (with anchors): 105.46 KB 286s Hash parameters computed in 0.117 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705096.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%........ 286s Hashing NZ_GG705096.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%........ 286s Hashing NZ_GG705096.gbk forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%........ 286s Hashing NZ_GG705096.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 90%........ 286s Initial hashing took: 0.004 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:19 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.124 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.125 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705096.fna 286s 47 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705096.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705097.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009879 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705097.fna 286s Read 976bp (976 bytesp) in 0.000 seconds (3.4 MBp/s) 286s Done with forward strand (976bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705097.fna loaded. 976 bytes 286s Loading NZ_GG705097.gbk 286s Read 976bp (976 bytesp) in 0.000 seconds (4.5 MBp/s) 286s Done with forward strand (976bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705097.gbk loaded. 976 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:33.5041% C:17.5205% G:17.8279% T:31.1475% 286s Global base frequencies: A/T:64.6516% C/G:35.3484% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.105 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.097 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.086 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.073 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.060 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.048 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.036 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.81 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 6.20 KB 286s ~ linear (in seq length) expected anchor cost of 91.50 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 6.45 KB 286s Expected memory usage (with anchors): 97.95 KB 286s Hash parameters computed in 0.124 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705097.fna forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%......... 286s Hashing NZ_GG705097.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%......... 286s Hashing NZ_GG705097.gbk forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%......... 286s Hashing NZ_GG705097.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%......... 286s Initial hashing took: 0.004 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 68%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 93%. 286s Anchor extraction completed in: 0.003 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.003 seconds 286s Total processing time: 0.131 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.132 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705097.fna 286s 18446744073709551593 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705097.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705098.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009880 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705098.fna 286s Read 959bp (959 bytesp) in 0.000 seconds (3.4 MBp/s) 286s Done with forward strand (959bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705098.fna loaded. 959 bytes 286s Loading NZ_GG705098.gbk 286s Read 959bp (959 bytesp) in 0.000 seconds (5.1 MBp/s) 286s Done with forward strand (959bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705098.gbk loaded. 959 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:33.0553% C:20.6465% G:17.414% T:28.8843% 286s Global base frequencies: A/T:61.9395% C/G:38.0605% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.104 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.099 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.094 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.083 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.067 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.053 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.039 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.026 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.75 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 6.08 KB 286s ~ linear (in seq length) expected anchor cost of 89.91 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 6.33 KB 286s Expected memory usage (with anchors): 96.24 KB 286s Hash parameters computed in 0.125 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705098.fna forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%......... 286s Hashing NZ_GG705098.fna backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%......... 286s Hashing NZ_GG705098.gbk forwards 286s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%......... 286s Hashing NZ_GG705098.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%......... 286s Initial hashing took: 0.005 seconds 286s Extracting anchors from hash-space. 286s (T -0.003 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.132 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.133 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705098.fna 286s 18446744073709551576 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705098.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705099.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009880 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705099.fna 286s Read 927bp (927 bytesp) in 0.000 seconds (3.0 MBp/s) 286s Done with forward strand (927bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705099.fna loaded. 927 bytes 286s Loading NZ_GG705099.gbk 286s Read 927bp (927 bytesp) in 0.000 seconds (3.8 MBp/s) 286s Done with forward strand (927bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705099.gbk loaded. 927 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:32.2546% C:16.5049% G:12.6214% T:38.6192% 286s Global base frequencies: A/T:70.8738% C/G:29.1262% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.100 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.090 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.078 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.066 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.056 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.62 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.88 KB 286s ~ linear (in seq length) expected anchor cost of 86.91 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 6.13 KB 286s Expected memory usage (with anchors): 93.03 KB 286s Hash parameters computed in 0.111 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705099.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Hashing NZ_GG705099.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Hashing NZ_GG705099.gbk forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Hashing NZ_GG705099.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Initial hashing took: 0.004 seconds 286s Extracting anchors from hash-space. 286s (T -0.003 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 18%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.118 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.119 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705099.fna 286s 18446744073709551544 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705099.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705100.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009880 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705100.fna 286s Read 885bp (885 bytesp) in 0.000 seconds (3.5 MBp/s) 286s Done with forward strand (885bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705100.fna loaded. 885 bytes 286s Loading NZ_GG705100.gbk 286s Read 885bp (885 bytesp) in 0.000 seconds (4.5 MBp/s) 286s Done with forward strand (885bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705100.gbk loaded. 885 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:26.6667% C:18.9831% G:15.5932% T:38.7571% 286s Global base frequencies: A/T:65.4237% C/G:34.5763% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.100 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.088 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.077 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.066 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.055 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.043 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.46 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.61 KB 286s ~ linear (in seq length) expected anchor cost of 82.97 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.86 KB 286s Expected memory usage (with anchors): 88.83 KB 286s Hash parameters computed in 0.108 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705100.fna forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Hashing NZ_GG705100.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Hashing NZ_GG705100.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Hashing NZ_GG705100.gbk backwards 286s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Initial hashing took: 0.004 seconds 286s Extracting anchors from hash-space. 286s (T -0.003 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.114 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.115 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705100.fna 286s 18446744073709551502 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705100.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705101.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009880 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705101.fna 286s Read 832bp (832 bytesp) in 0.000 seconds (2.9 MBp/s) 286s Done with forward strand (832bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705101.fna loaded. 832 bytes 286s Loading NZ_GG705101.gbk 286s Read 832bp (832 bytesp) in 0.000 seconds (4.2 MBp/s) 286s Done with forward strand (832bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705101.gbk loaded. 832 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:33.6538% C:15.9856% G:18.149% T:32.2115% 286s Global base frequencies: A/T:65.8654% C/G:34.1346% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.101 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.090 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.077 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.066 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.055 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.25 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.28 KB 286s ~ linear (in seq length) expected anchor cost of 78.00 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.53 KB 286s Expected memory usage (with anchors): 83.53 KB 286s Hash parameters computed in 0.109 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705101.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 91%........ 286s Hashing NZ_GG705101.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 91%........ 286s Hashing NZ_GG705101.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 91%........ 286s Hashing NZ_GG705101.gbk backwards 286s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 91%........ 286s Initial hashing took: 0.002 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.114 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.115 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705101.fna 286s 18446744073709551449 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705101.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705102.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009880 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705102.fna 286s Read 828bp (828 bytesp) in 0.000 seconds (2.9 MBp/s) 286s Done with forward strand (828bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705102.fna loaded. 828 bytes 286s Loading NZ_GG705102.gbk 286s Read 828bp (828 bytesp) in 0.000 seconds (4.3 MBp/s) 286s Done with forward strand (828bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705102.gbk loaded. 828 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:29.8309% C:22.4638% G:25% T:22.7053% 286s Global base frequencies: A/T:52.5362% C/G:47.4638% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.102 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.095 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.082 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.069 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.022 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.23 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.26 KB 286s ~ linear (in seq length) expected anchor cost of 77.62 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.51 KB 286s Expected memory usage (with anchors): 83.13 KB 286s Hash parameters computed in 0.111 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705102.fna forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Hashing NZ_GG705102.fna backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Hashing NZ_GG705102.gbk forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Hashing NZ_GG705102.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Initial hashing took: 0.006 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.120 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.121 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705102.fna 286s 18446744073709551445 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705102.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705103.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009880 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705103.fna 286s Read 828bp (828 bytesp) in 0.000 seconds (3.1 MBp/s) 286s Done with forward strand (828bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705103.fna loaded. 828 bytes 286s Loading NZ_GG705103.gbk 286s Read 828bp (828 bytesp) in 0.000 seconds (3.2 MBp/s) 286s Done with forward strand (828bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705103.gbk loaded. 828 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:31.1594% C:20.6522% G:22.2222% T:25.9662% 286s Global base frequencies: A/T:57.1256% C/G:42.8744% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.099 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.088 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.076 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.066 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.055 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.044 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.23 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.26 KB 286s ~ linear (in seq length) expected anchor cost of 77.62 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.51 KB 286s Expected memory usage (with anchors): 83.13 KB 286s Hash parameters computed in 0.113 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705103.fna forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Hashing NZ_GG705103.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Hashing NZ_GG705103.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Hashing NZ_GG705103.gbk backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 90%........ 286s Initial hashing took: 0.005 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:20 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.121 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.122 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705103.fna 286s 18446744073709551445 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705103.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705104.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009881 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705104.fna 286s Read 821bp (821 bytesp) in 0.000 seconds (3.3 MBp/s) 286s Done with forward strand (821bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705104.fna loaded. 821 bytes 286s Loading NZ_GG705104.gbk 286s Read 821bp (821 bytesp) in 0.000 seconds (4.4 MBp/s) 286s Done with forward strand (821bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705104.gbk loaded. 821 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:28.5018% C:21.6809% G:23.1425% T:26.6748% 286s Global base frequencies: A/T:55.1766% C/G:44.8234% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.102 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.092 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.080 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.068 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.056 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.21 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.21 KB 286s ~ linear (in seq length) expected anchor cost of 76.97 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.46 KB 286s Expected memory usage (with anchors): 82.42 KB 286s Hash parameters computed in 0.114 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705104.fna forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%....... 286s Hashing NZ_GG705104.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%....... 286s Hashing NZ_GG705104.gbk forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%....... 286s Hashing NZ_GG705104.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%....... 286s Initial hashing took: 0.003 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.120 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.121 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705104.fna 286s 18446744073709551438 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705104.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705105.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009881 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705105.fna 286s Read 802bp (802 bytesp) in 0.000 seconds (2.7 MBp/s) 286s Done with forward strand (802bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705105.fna loaded. 802 bytes 286s Loading NZ_GG705105.gbk 286s Read 802bp (802 bytesp) in 0.000 seconds (3.4 MBp/s) 286s Done with forward strand (802bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705105.gbk loaded. 802 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:33.9152% C:17.7057% G:18.2045% T:30.1746% 286s Global base frequencies: A/T:64.0898% C/G:35.9102% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.105 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.095 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.081 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.069 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.058 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.046 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.13 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.09 KB 286s ~ linear (in seq length) expected anchor cost of 75.19 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.34 KB 286s Expected memory usage (with anchors): 80.53 KB 286s Hash parameters computed in 0.115 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705105.fna forwards 286s 0%........ (T -0.004 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%........ (T -0.003 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%....... 286s Hashing NZ_GG705105.fna backwards 286s 0%........ (T -0.003 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%....... 286s Hashing NZ_GG705105.gbk forwards 286s 0%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%....... 286s Hashing NZ_GG705105.gbk backwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%....... 286s Initial hashing took: 0.007 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.125 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.126 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705105.fna 286s 18446744073709551419 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705105.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705106.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009881 (automatic) 286s Bitscore dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705106.fna 286s Read 800bp (800 bytesp) in 0.000 seconds (3.3 MBp/s) 286s Done with forward strand (800bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705106.fna loaded. 800 bytes 286s Loading NZ_GG705106.gbk 286s Read 800bp (800 bytesp) in 0.000 seconds (4.2 MBp/s) 286s Done with forward strand (800bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705106.gbk loaded. 800 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:28.875% C:18% G:21.625% T:31.5% 286s Global base frequencies: A/T:60.375% C/G:39.625% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.104 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.097 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.083 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.070 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.058 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.046 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.12 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.08 KB 286s ~ linear (in seq length) expected anchor cost of 75.00 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.33 KB 286s Expected memory usage (with anchors): 80.33 KB 286s Hash parameters computed in 0.115 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705106.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 90%......... 286s Hashing NZ_GG705106.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 90%......... 286s Hashing NZ_GG705106.gbk forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 90%......... 286s Hashing NZ_GG705106.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 90%......... 286s Initial hashing took: 0.006 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.123 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.124 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705106.fna 286s 18446744073709551417 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705106.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705107.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009881 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705107.fna 286s Read 793bp (793 bytesp) in 0.000 seconds (2.0 MBp/s) 286s Done with forward strand (793bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705107.fna loaded. 793 bytes 286s Loading NZ_GG705107.gbk 286s Read 793bp (793 bytesp) in 0.000 seconds (3.9 MBp/s) 286s Done with forward strand (793bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705107.gbk loaded. 793 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:29.5082% C:14.3758% G:19.4199% T:36.6961% 286s Global base frequencies: A/T:66.2043% C/G:33.7957% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.105 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.101 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.087 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.073 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.060 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.048 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.036 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.10 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.03 KB 286s ~ linear (in seq length) expected anchor cost of 74.34 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.28 KB 286s Expected memory usage (with anchors): 79.62 KB 286s Hash parameters computed in 0.116 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705107.fna forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Hashing NZ_GG705107.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Hashing NZ_GG705107.gbk forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Hashing NZ_GG705107.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Initial hashing took: 0.004 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.121 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.122 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705107.fna 286s 18446744073709551410 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705107.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705108.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009881 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705108.fna 286s Read 792bp (792 bytesp) in 0.000 seconds (2.9 MBp/s) 286s Done with forward strand (792bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705108.fna loaded. 792 bytes 286s Loading NZ_GG705108.gbk 286s Read 792bp (792 bytesp) in 0.000 seconds (3.8 MBp/s) 286s Done with forward strand (792bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705108.gbk loaded. 792 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:34.9747% C:15.6566% G:20.8333% T:28.5354% 286s Global base frequencies: A/T:63.5101% C/G:36.4899% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.101 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.092 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.080 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.068 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.09 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.03 KB 286s ~ linear (in seq length) expected anchor cost of 74.25 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.28 KB 286s Expected memory usage (with anchors): 79.53 KB 286s Hash parameters computed in 0.112 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705108.fna forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Hashing NZ_GG705108.fna backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Hashing NZ_GG705108.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Hashing NZ_GG705108.gbk backwards 286s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Initial hashing took: 0.002 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.117 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.117 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705108.fna 286s 18446744073709551409 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705108.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705109.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009881 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705109.fna 286s Read 790bp (790 bytesp) in 0.000 seconds (2.9 MBp/s) 286s Done with forward strand (790bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705109.fna loaded. 790 bytes 286s Loading NZ_GG705109.gbk 286s Read 790bp (790 bytesp) in 0.000 seconds (4.2 MBp/s) 286s Done with forward strand (790bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705109.gbk loaded. 790 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:27.5949% C:25.0633% G:23.038% T:24.3038% 286s Global base frequencies: A/T:51.8987% C/G:48.1013% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.105 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.090 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.078 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.067 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.049 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.040 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.028 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 80%......... (T -0.013 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.09 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.01 KB 286s ~ linear (in seq length) expected anchor cost of 74.06 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.26 KB 286s Expected memory usage (with anchors): 79.33 KB 286s Hash parameters computed in 0.146 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705109.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:21 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Hashing NZ_GG705109.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Hashing NZ_GG705109.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Hashing NZ_GG705109.gbk backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Initial hashing took: 0.005 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.154 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.155 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705109.fna 286s 18446744073709551407 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705109.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705110.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009882 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705110.fna 286s Read 789bp (789 bytesp) in 0.000 seconds (1.5 MBp/s) 286s Done with forward strand (789bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705110.fna loaded. 789 bytes 286s Loading NZ_GG705110.gbk 286s Read 789bp (789 bytesp) in 0.000 seconds (2.3 MBp/s) 286s Done with forward strand (789bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705110.gbk loaded. 789 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:28.6439% C:19.5184% G:16.0963% T:35.7414% 286s Global base frequencies: A/T:64.3853% C/G:35.6147% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.164 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.131 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.103 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.083 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.067 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.052 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.038 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.025 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.08 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.00 KB 286s ~ linear (in seq length) expected anchor cost of 73.97 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.25 KB 286s Expected memory usage (with anchors): 79.22 KB 286s Hash parameters computed in 0.122 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705110.fna forwards 286s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Hashing NZ_GG705110.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Hashing NZ_GG705110.gbk forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Hashing NZ_GG705110.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Initial hashing took: 0.002 seconds 286s Extracting anchors from hash-space. 286s (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.128 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.128 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705110.fna 286s 18446744073709551406 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705110.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705111.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009882 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705111.fna 286s Read 788bp (788 bytesp) in 0.000 seconds (3.2 MBp/s) 286s Done with forward strand (788bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705111.fna loaded. 788 bytes 286s Loading NZ_GG705111.gbk 286s Read 788bp (788 bytesp) in 0.000 seconds (4.3 MBp/s) 286s Done with forward strand (788bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705111.gbk loaded. 788 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:35.1523% C:15.3553% G:20.0508% T:29.4416% 286s Global base frequencies: A/T:64.5939% C/G:35.4061% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.105 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.093 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.080 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.068 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.056 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.08 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 5.00 KB 286s ~ linear (in seq length) expected anchor cost of 73.88 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.25 KB 286s Expected memory usage (with anchors): 79.13 KB 286s Hash parameters computed in 0.112 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705111.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Hashing NZ_GG705111.fna backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Hashing NZ_GG705111.gbk forwards 286s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Hashing NZ_GG705111.gbk backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Initial hashing took: 0.006 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.120 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.121 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705111.fna 286s 18446744073709551405 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705111.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705112.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009882 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705112.fna 286s Read 787bp (787 bytesp) in 0.000 seconds (2.9 MBp/s) 286s Done with forward strand (787bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705112.fna loaded. 787 bytes 286s Loading NZ_GG705112.gbk 286s Read 787bp (787 bytesp) in 0.000 seconds (4.2 MBp/s) 286s Done with forward strand (787bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705112.gbk loaded. 787 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:29.352% C:21.601% G:15.5019% T:33.5451% 286s Global base frequencies: A/T:62.8971% C/G:37.1029% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.100 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.090 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.079 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.068 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.07 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 4.99 KB 286s ~ linear (in seq length) expected anchor cost of 73.78 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.24 KB 286s Expected memory usage (with anchors): 79.02 KB 286s Hash parameters computed in 0.113 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705112.fna forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Hashing NZ_GG705112.fna backwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Hashing NZ_GG705112.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Hashing NZ_GG705112.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%......... 286s Initial hashing took: 0.003 seconds 286s Extracting anchors from hash-space. 286s (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.118 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.119 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705112.fna 286s 18446744073709551404 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705112.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705113.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009882 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705113.fna 286s Read 776bp (776 bytesp) in 0.000 seconds (3.1 MBp/s) 286s Done with forward strand (776bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705113.fna loaded. 776 bytes 286s Loading NZ_GG705113.gbk 286s Read 776bp (776 bytesp) in 0.000 seconds (4.0 MBp/s) 286s Done with forward strand (776bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705113.gbk loaded. 776 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:27.3196% C:23.7113% G:22.6804% T:26.2887% 286s Global base frequencies: A/T:53.6082% C/G:46.3918% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.106 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.093 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.082 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.071 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.059 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 3.03 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 4.93 KB 286s ~ linear (in seq length) expected anchor cost of 72.75 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 5.18 KB 286s Expected memory usage (with anchors): 77.93 KB 286s Hash parameters computed in 0.117 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705113.fna forwards 286s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%........ 286s Hashing NZ_GG705113.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%........ 286s Hashing NZ_GG705113.gbk forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%........ 286s Hashing NZ_GG705113.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 90%........ 286s Initial hashing took: 0.004 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.124 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.125 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705113.fna 286s 18446744073709551393 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705113.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705114.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009882 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705114.fna 286s Read 713bp (713 bytesp) in 0.000 seconds (2.6 MBp/s) 286s Done with forward strand (713bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705114.fna loaded. 713 bytes 286s Loading NZ_GG705114.gbk 286s Read 713bp (713 bytesp) in 0.000 seconds (3.3 MBp/s) 286s Done with forward strand (713bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705114.gbk loaded. 713 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:27.3492% C:13.0435% G:17.2511% T:42.3562% 286s Global base frequencies: A/T:69.7055% C/G:30.2945% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.102 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%......... (T -0.091 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%......... (T -0.079 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%......... (T -0.067 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%......... (T -0.056 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.79 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 4.52 KB 286s ~ linear (in seq length) expected anchor cost of 66.84 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 4.77 KB 286s Expected memory usage (with anchors): 71.61 KB 286s Hash parameters computed in 0.118 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705114.fna forwards 286s 0%........ (T -0.004 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%........ (T -0.003 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 91%....... 286s Hashing NZ_GG705114.fna backwards 286s 0%........ (T -0.003 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 91%....... 286s Hashing NZ_GG705114.gbk forwards 286s 0%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 91%....... 286s Hashing NZ_GG705114.gbk backwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 91%....... 286s Initial hashing took: 0.006 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:22 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.126 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.127 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705114.fna 286s 18446744073709551330 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705114.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705115.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009882 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705115.fna 286s Read 687bp (687 bytesp) in 0.000 seconds (2.5 MBp/s) 286s Done with forward strand (687bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705115.fna loaded. 687 bytes 286s Loading NZ_GG705115.gbk 286s Read 687bp (687 bytesp) in 0.000 seconds (3.7 MBp/s) 286s Done with forward strand (687bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705115.gbk loaded. 687 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:36.3901% C:17.6128% G:19.5051% T:26.492% 286s Global base frequencies: A/T:62.8821% C/G:37.1179% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.103 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.095 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.083 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.071 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.059 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.68 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 4.35 KB 286s ~ linear (in seq length) expected anchor cost of 64.41 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 4.60 KB 286s Expected memory usage (with anchors): 69.01 KB 286s Hash parameters computed in 0.120 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705115.fna forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705115.fna backwards 286s 0%......... (T -0.004 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705115.gbk forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705115.gbk backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Initial hashing took: 0.008 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.130 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.130 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705115.fna 286s 18446744073709551304 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705115.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705116.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009883 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705116.fna 286s Read 687bp (687 bytesp) in 0.000 seconds (2.8 MBp/s) 286s Done with forward strand (687bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705116.fna loaded. 687 bytes 286s Loading NZ_GG705116.gbk 286s Read 687bp (687 bytesp) in 0.000 seconds (3.9 MBp/s) 286s Done with forward strand (687bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705116.gbk loaded. 687 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:36.3901% C:18.0495% G:19.7962% T:25.7642% 286s Global base frequencies: A/T:62.1543% C/G:37.8457% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.099 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.089 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.079 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.069 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.046 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.68 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 4.35 KB 286s ~ linear (in seq length) expected anchor cost of 64.41 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 4.60 KB 286s Expected memory usage (with anchors): 69.01 KB 286s Hash parameters computed in 0.116 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705116.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705116.fna backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705116.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705116.gbk backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Initial hashing took: 0.007 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.125 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.125 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705116.fna 286s 18446744073709551304 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705116.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705117.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009883 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705117.fna 286s Read 678bp (678 bytesp) in 0.000 seconds (2.6 MBp/s) 286s Done with forward strand (678bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705117.fna loaded. 678 bytes 286s Loading NZ_GG705117.gbk 286s Read 678bp (678 bytesp) in 0.000 seconds (3.7 MBp/s) 286s Done with forward strand (678bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705117.gbk loaded. 678 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:30.3835% C:19.6165% G:13.7168% T:36.2832% 286s Global base frequencies: A/T:66.6667% C/G:33.3333% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.106 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.097 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.084 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.072 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.059 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.048 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.036 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.65 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 4.30 KB 286s ~ linear (in seq length) expected anchor cost of 63.56 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 4.55 KB 286s Expected memory usage (with anchors): 68.12 KB 286s Hash parameters computed in 0.118 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705117.fna forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705117.fna backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705117.gbk forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705117.gbk backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Initial hashing took: 0.009 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.128 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.129 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705117.fna 286s 18446744073709551295 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705117.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705118.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009883 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705118.fna 286s Read 665bp (665 bytesp) in 0.000 seconds (2.3 MBp/s) 286s Done with forward strand (665bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705118.fna loaded. 665 bytes 286s Loading NZ_GG705118.gbk 286s Read 665bp (665 bytesp) in 0.000 seconds (3.0 MBp/s) 286s Done with forward strand (665bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705118.gbk loaded. 665 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:28.7218% C:21.8045% G:23.609% T:25.8647% 286s Global base frequencies: A/T:54.5865% C/G:45.4135% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.102 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.092 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.080 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.069 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.046 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.60 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 4.21 KB 286s ~ linear (in seq length) expected anchor cost of 62.34 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 4.46 KB 286s Expected memory usage (with anchors): 66.81 KB 286s Hash parameters computed in 0.117 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705118.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705118.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705118.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705118.gbk backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Initial hashing took: 0.003 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 43%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.122 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.123 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705118.fna 286s 18446744073709551282 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705118.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705119.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009883 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705119.fna 286s Read 655bp (655 bytesp) in 0.000 seconds (2.3 MBp/s) 286s Done with forward strand (655bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705119.fna loaded. 655 bytes 286s Loading NZ_GG705119.gbk 286s Read 655bp (655 bytesp) in 0.000 seconds (3.5 MBp/s) 286s Done with forward strand (655bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705119.gbk loaded. 655 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:30.3817% C:21.9847% G:22.5954% T:25.0382% 286s Global base frequencies: A/T:55.4198% C/G:44.5802% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.107 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.097 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.090 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.075 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.061 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.049 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.036 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.56 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 4.15 KB 286s ~ linear (in seq length) expected anchor cost of 61.41 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 4.40 KB 286s Expected memory usage (with anchors): 65.81 KB 286s Hash parameters computed in 0.122 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705119.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705119.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705119.gbk forwards 286s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705119.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Initial hashing took: 0.005 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 43%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.128 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.129 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705119.fna 286s 18446744073709551272 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705119.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705120.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009883 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705120.fna 286s Read 638bp (638 bytesp) in 0.000 seconds (2.3 MBp/s) 286s Done with forward strand (638bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705120.fna loaded. 638 bytes 286s Loading NZ_GG705120.gbk 286s Read 638bp (638 bytesp) in 0.000 seconds (2.9 MBp/s) 286s Done with forward strand (638bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705120.gbk loaded. 638 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:23.511% C:22.7273% G:24.9216% T:28.8401% 286s Global base frequencies: A/T:52.3511% C/G:47.6489% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.121 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.099 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.084 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.071 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.058 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.046 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.49 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 4.05 KB 286s ~ linear (in seq length) expected anchor cost of 59.81 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 4.30 KB 286s Expected memory usage (with anchors): 64.11 KB 286s Hash parameters computed in 0.115 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705120.fna forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705120.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705120.gbk forwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Hashing NZ_GG705120.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 90%........ 286s Initial hashing took: 0.002 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 43%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.119 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.120 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705120.fna 286s 18446744073709551255 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705120.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705121.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009883 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705121.fna 286s Read 615bp (615 bytesp) in 0.000 seconds (2.3 MBp/s) 286s Done with forward strand (615bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705121.fna loaded. 615 bytes 286s Loading NZ_GG705121.gbk 286s Read 615bp (615 bytesp) in 0.000 seconds (3.0 MBp/s) 286s Done with forward strand (615bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705121.gbk loaded. 615 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:33.8211% C:18.374% G:17.8862% T:29.9187% 286s Global base frequencies: A/T:63.7398% C/G:36.2602% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.097 seconds) ETA: Thu Mar 21 08:31:23 2024 286s 10%......... (T -0.089 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.080 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.068 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.056 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.045 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.40 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 3.90 KB 286s ~ linear (in seq length) expected anchor cost of 57.66 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 4.15 KB 286s Expected memory usage (with anchors): 61.80 KB 286s Hash parameters computed in 0.125 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705121.fna forwards 286s 0%........ (T -0.007 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%........ (T -0.003 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%....... 286s Hashing NZ_GG705121.fna backwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%....... 286s Hashing NZ_GG705121.gbk forwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%....... 286s Hashing NZ_GG705121.gbk backwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%....... 286s Initial hashing took: 0.005 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.133 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.133 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705121.fna 286s 18446744073709551232 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705121.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705122.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009884 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705122.fna 286s Read 603bp (603 bytesp) in 0.000 seconds (1.3 MBp/s) 286s Done with forward strand (603bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705122.fna loaded. 603 bytes 286s Loading NZ_GG705122.gbk 286s Read 603bp (603 bytesp) in 0.000 seconds (2.2 MBp/s) 286s Done with forward strand (603bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705122.gbk loaded. 603 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:30.8458% C:18.2421% G:20.8955% T:30.0166% 286s Global base frequencies: A/T:60.8624% C/G:39.1376% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.135 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.113 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.101 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.087 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.076 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.066 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.033 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.015 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.36 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 3.82 KB 286s ~ linear (in seq length) expected anchor cost of 56.53 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 4.07 KB 286s Expected memory usage (with anchors): 60.60 KB 286s Hash parameters computed in 0.169 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705122.fna forwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 71%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%....... 286s Hashing NZ_GG705122.fna backwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 71%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%....... 286s Hashing NZ_GG705122.gbk forwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 71%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%....... 286s Hashing NZ_GG705122.gbk backwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 71%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%....... 286s Initial hashing took: 0.004 seconds 286s Extracting anchors from hash-space. 286s (T -0.004 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 6%. (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 43%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 56%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 93%. 286s Anchor extraction completed in: 0.002 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.002 seconds 286s Total processing time: 0.176 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.002 seconds 286s Total time: 0.178 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705122.fna 286s 18446744073709551220 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705122.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705123.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009884 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705123.fna 286s Read 603bp (603 bytesp) in 0.001 seconds (1.1 MBp/s) 286s Done with forward strand (603bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705123.fna loaded. 603 bytes 286s Loading NZ_GG705123.gbk 286s Read 603bp (603 bytesp) in 0.000 seconds (1.6 MBp/s) 286s Done with forward strand (603bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705123.gbk loaded. 603 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:30.6799% C:18.0763% G:20.5638% T:30.6799% 286s Global base frequencies: A/T:61.3599% C/G:38.6401% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.179 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.144 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.126 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.100 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.079 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.060 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.043 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.028 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.012 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.36 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 3.82 KB 286s ~ linear (in seq length) expected anchor cost of 56.53 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 4.07 KB 286s Expected memory usage (with anchors): 60.60 KB 286s Hash parameters computed in 0.137 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705123.fna forwards 286s 0%........ (T -0.003 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%........ (T -0.003 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 71%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%....... 286s Hashing NZ_GG705123.fna backwards 286s 0%........ (T -0.003 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 71%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%....... 286s Hashing NZ_GG705123.gbk forwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 71%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%....... 286s Hashing NZ_GG705123.gbk backwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 71%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%....... 286s Initial hashing took: 0.005 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 43%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.145 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.145 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705123.fna 286s 18446744073709551220 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705123.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705124.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009884 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705124.fna 286s Read 597bp (597 bytesp) in 0.000 seconds (1.4 MBp/s) 286s Done with forward strand (597bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705124.fna loaded. 597 bytes 286s Loading NZ_GG705124.gbk 286s Read 597bp (597 bytesp) in 0.000 seconds (2.2 MBp/s) 286s Done with forward strand (597bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705124.gbk loaded. 597 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:38.6935% C:10.8878% G:20.268% T:30.1508% 286s Global base frequencies: A/T:68.8442% C/G:31.1558% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.114 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.096 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.082 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.070 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.060 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.048 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.036 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.33 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 3.78 KB 286s ~ linear (in seq length) expected anchor cost of 55.97 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 4.03 KB 286s Expected memory usage (with anchors): 60.00 KB 286s Hash parameters computed in 0.119 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705124.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 90%........ 286s Hashing NZ_GG705124.fna backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 90%........ 286s Hashing NZ_GG705124.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 90%........ 286s Hashing NZ_GG705124.gbk backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 90%........ 286s Initial hashing took: 0.004 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 43%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.125 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.126 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705124.fna 286s 18446744073709551214 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705124.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705125.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009884 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705125.fna 286s Read 583bp (583 bytesp) in 0.000 seconds (1.7 MBp/s) 286s Done with forward strand (583bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705125.fna loaded. 583 bytes 286s Loading NZ_GG705125.gbk 286s Read 583bp (583 bytesp) in 0.000 seconds (3.1 MBp/s) 286s Done with forward strand (583bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705125.gbk loaded. 583 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:27.7873% C:20.5832% G:18.8679% T:32.7616% 286s Global base frequencies: A/T:60.5489% C/G:39.4511% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.100 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.089 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.078 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.068 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.057 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.046 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.034 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.28 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 3.69 KB 286s ~ linear (in seq length) expected anchor cost of 54.66 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 3.94 KB 286s Expected memory usage (with anchors): 58.60 KB 286s Hash parameters computed in 0.114 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705125.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 71%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%........ 286s Hashing NZ_GG705125.fna backwards 286s 0%......... (T -0.005 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 71%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%........ 286s Hashing NZ_GG705125.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 71%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%........ 286s Hashing NZ_GG705125.gbk backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 71%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%........ 286s Initial hashing took: 0.006 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 43%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.122 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.123 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705125.fna 286s 18446744073709551200 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705125.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705126.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009884 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705126.fna 286s Read 559bp (559 bytesp) in 0.000 seconds (2.2 MBp/s) 286s Done with forward strand (559bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705126.fna loaded. 559 bytes 286s Loading NZ_GG705126.gbk 286s Read 559bp (559 bytesp) in 0.000 seconds (3.4 MBp/s) 286s Done with forward strand (559bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705126.gbk loaded. 559 bytes 286s Sequence loading took: 0.000 seconds 286s Forward frequencies: A:37.3882% C:13.9535% G:15.2057% T:33.4526% 286s Global base frequencies: A/T:70.8408% C/G:29.1592% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.108 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.093 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.081 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.069 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.058 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.046 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.18 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 3.54 KB 286s ~ linear (in seq length) expected anchor cost of 52.41 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 3.79 KB 286s Expected memory usage (with anchors): 56.20 KB 286s Hash parameters computed in 0.116 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705126.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 90%........ 286s Hashing NZ_GG705126.fna backwards 286s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 90%........ 286s Hashing NZ_GG705126.gbk forwards 286s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 90%........ 286s Hashing NZ_GG705126.gbk backwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 10%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 90%........ 286s Initial hashing took: 0.004 seconds 286s Extracting anchors from hash-space. 286s (T -0.002 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 43%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:24 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.122 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.122 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705126.fna 286s 18446744073709551176 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705126.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705127.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009885 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705127.fna 286s Read 549bp (549 bytesp) in 0.000 seconds (1.4 MBp/s) 286s Done with forward strand (549bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705127.fna loaded. 549 bytes 286s Loading NZ_GG705127.gbk 286s Read 549bp (549 bytesp) in 0.000 seconds (3.0 MBp/s) 286s Done with forward strand (549bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705127.gbk loaded. 549 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:32.969% C:20.4007% G:20.765% T:25.8652% 286s Global base frequencies: A/T:58.8342% C/G:41.1658% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.103 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%......... (T -0.095 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%......... (T -0.084 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%......... (T -0.071 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%......... (T -0.060 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%......... (T -0.048 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%......... (T -0.036 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.14 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 3.48 KB 286s ~ linear (in seq length) expected anchor cost of 51.47 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 3.73 KB 286s Expected memory usage (with anchors): 55.20 KB 286s Hash parameters computed in 0.119 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705127.fna forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 90%........ 286s Hashing NZ_GG705127.fna backwards 286s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 90%........ 286s Hashing NZ_GG705127.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 90%........ 286s Hashing NZ_GG705127.gbk backwards 286s 0%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 90%........ 286s Initial hashing took: 0.001 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 43%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.122 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.000 seconds 286s Total time: 0.123 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705127.fna 286s 18446744073709551166 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705127.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705128.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009885 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705128.fna 286s Read 548bp (548 bytesp) in 0.000 seconds (1.8 MBp/s) 286s Done with forward strand (548bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705128.fna loaded. 548 bytes 286s Loading NZ_GG705128.gbk 286s Read 548bp (548 bytesp) in 0.000 seconds (2.6 MBp/s) 286s Done with forward strand (548bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705128.gbk loaded. 548 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:31.9343% C:19.5255% G:21.7153% T:26.8248% 286s Global base frequencies: A/T:58.7591% C/G:41.2409% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.116 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%......... (T -0.101 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%......... (T -0.086 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%......... (T -0.073 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%......... (T -0.060 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%......... (T -0.035 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%......... (T -0.023 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%......... (T -0.010 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.14 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 3.48 KB 286s ~ linear (in seq length) expected anchor cost of 51.38 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 3.73 KB 286s Expected memory usage (with anchors): 55.10 KB 286s Hash parameters computed in 0.116 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705128.fna forwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 90%........ 286s Hashing NZ_GG705128.fna backwards 286s 0%......... (T -0.003 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 90%........ 286s Hashing NZ_GG705128.gbk forwards 286s 0%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 90%........ 286s Hashing NZ_GG705128.gbk backwards 286s 0%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%......... (T -0.002 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%......... (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%......... (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 90%........ 286s Initial hashing took: 0.006 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 43%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.124 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.125 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705128.fna 286s 18446744073709551165 286s PASSED GENEPARSE 286s 286s Testing mbfa on NZ_GG705128.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705129.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009885 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705129.fna 286s Read 536bp (536 bytesp) in 0.000 seconds (1.8 MBp/s) 286s Done with forward strand (536bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705129.fna loaded. 536 bytes 286s Loading NZ_GG705129.gbk 286s Read 536bp (536 bytesp) in 0.000 seconds (2.9 MBp/s) 286s Done with forward strand (536bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705129.gbk loaded. 536 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:36.3806% C:13.2463% G:17.9104% T:32.4627% 286s Global base frequencies: A/T:68.8433% C/G:31.1567% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.106 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%......... (T -0.092 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%......... (T -0.083 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%......... (T -0.073 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%......... (T -0.061 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%......... (T -0.048 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%......... (T -0.036 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.09 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 3.40 KB 286s ~ linear (in seq length) expected anchor cost of 50.25 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 3.65 KB 286s Expected memory usage (with anchors): 53.90 KB 286s Hash parameters computed in 0.119 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705129.fna forwards 286s 0%........ (T -0.003 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%........ (T -0.003 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 91%....... 286s Hashing NZ_GG705129.fna backwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 91%....... 286s Hashing NZ_GG705129.gbk forwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 91%....... 286s Hashing NZ_GG705129.gbk backwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 91%....... 286s Initial hashing took: 0.003 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 31%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 43%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.124 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.001 seconds 286s Total time: 0.125 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705129.fna 286s 18446744073709551153 286s PASSED GENEPARSE 286s 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s Testing mbfa on NZ_GG705129.fna 286s PASSED mbfa 286s 286s Test Murasaki on NZ_GG705130.fna 286s Verbosity level is: 0 286s Writing to: output/test 286s Pattern is: 101 286s Max usable hash bits: 27 286s Hit filter is: 0 286s Hash table type is: EcoHash 286s Hashing every: 1 base 286s Histogram detail is: 0 286s Hashing function is: 3 286s Collision profiling is: disabled 286s Repeats are: unmasked 286s Mergefilter is at: 100 286s Random seed: 1711009885 (automatic) 286s Bitscore output: on 286s Leave status records: no 286s Join neighbors is: off 286s Target memory is: 1.30 GB 286s Retain members is: true 286s Store repeatmap? yes 286s Reverse complement data is generated on the fly 286s Rifts allowed: 0 286s Fuzzy Extension: yes 286s Score by minimum pair: yes 286s Gapped anchors: no 286s Large sequence support is: enabled => seqpos is 8 bytes 286s Murasaki version 1.68.6 (LARGESEQ) 286s Loading NZ_GG705130.fna 286s Read 512bp (512 bytesp) in 0.000 seconds (1.9 MBp/s) 286s Done with forward strand (512bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705130.fna loaded. 512 bytes 286s Loading NZ_GG705130.gbk 286s Read 512bp (512 bytesp) in 0.000 seconds (2.4 MBp/s) 286s Done with forward strand (512bp). Preparing reverse complement... 286s <-> Reversing metdata. 286s Done. 286s Seq NZ_GG705130.gbk loaded. 512 bytes 286s Sequence loading took: 0.001 seconds 286s Forward frequencies: A:33.5938% C:14.4531% G:19.1406% T:32.8125% 286s Global base frequencies: A/T:66.4062% C/G:33.5938% 286s Pat: 3 bases long with weight 2 286s 1 101 286s Computing hash parameters... 286s Using 4 hashbits 286s 0%......... (T -0.106 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%......... (T -0.091 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%......... (T -0.081 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%......... (T -0.069 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%......... (T -0.058 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 50%......... (T -0.047 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 60%......... (T -0.036 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 70%......... (T -0.024 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 80%......... (T -0.011 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 91%........ 286s Acceptable hash function found after 1000 cycles. 286s Best uses 2/2 bases and has 0 empties from 2 inputs. 286s Score: 0.96875 (cf. worst: -4.51562) 286s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 286s Total correlation penalty: 0 286s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 286s 10 286s == 286s w[ 0]>>29: -.C 286s w[ 0]>>30: A.- 286s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 286s Ecolist (optimistic): Expcted entries per list: 8 286s Ecolist (optimistic): Minimum chunks per list: 4 286s Would take minimum 256.000000 bytes to make perfect hash. 286s Hashing 2.00 KB of sequence requires: 286s ~ linear (in seq length) hashing cost of 3.25 KB 286s ~ linear (in seq length) expected anchor cost of 48.00 KB 286s Initial hash table uses: 256 bytes (4 bits, 16 entries) 286s Expected memory usage (without anchors): 3.50 KB 286s Expected memory usage (with anchors): 51.50 KB 286s Hash parameters computed in 0.122 seconds 286s Creating storage structures: 16 entries in 256 bytes space. 286s Storage structures created in: 0.000 seconds 286s 286s Hashing NZ_GG705130.fna forwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 51%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 61%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 71%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 91%...... 286s Hashing NZ_GG705130.fna backwards 286s 0%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%........ (T -0.002 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%........ (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 51%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 61%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 71%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 91%...... 286s Hashing NZ_GG705130.gbk forwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 51%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 61%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 71%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 91%...... 286s Hashing NZ_GG705130.gbk backwards 286s 0%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 10%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 20%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 30%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 40%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 51%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 61%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 71%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 81%........ (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 91%...... 286s Initial hashing took: 0.002 seconds 286s Extracting anchors from hash-space. 286s (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 6%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 18%. (T -0.001 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 31%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 43%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 56%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 68%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 81%. (T -0.000 seconds) ETA: Thu Mar 21 08:31:25 2024 286s 93%. 286s Anchor extraction completed in: 0.001 seconds 286s Total anchors: 0 286s Anchor extraction + merge time: 0.001 seconds 286s Total processing time: 0.126 seconds 286s Writing anchors... 286s Total seeds used in anchors: 16 286s Hash performance: 286s Keys used: 16 out of 16 possible (100.00%). 286s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 286s Average pigeons per pigeon hole: 1 286s Writing 16 repeats...Output writing finished in: 0.000 seconds 286s Total time: 0.126 seconds 286s Murasaki finished! 286s PASSED MURASAKI 286s 286s Testing Genepare on NZ_GG705130.fna 286s 18446744073709551129 286s PASSED GENEPARSE 286s 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s Testing mbfa on NZ_GG705130.fna 286s PASSED mbfa 286s 286s PASS! 287s autopkgtest [08:31:26]: test run-unit-test: -----------------------] 287s autopkgtest [08:31:26]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 287s run-unit-test PASS 288s autopkgtest [08:31:27]: @@@@@@@@@@@@@@@@@@@@ summary 288s run-unit-test PASS 313s Creating nova instance adt-noble-s390x-murasaki-20240321-082639-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240321.img (UUID a4b1c77c-a35e-4d28-a8d9-902a1febb465)...