0s autopkgtest [20:39:47]: starting date and time: 2024-03-21 20:39:47+0000 0s autopkgtest [20:39:47]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [20:39:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.nar7momi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:openssh,src:at-spi2-core,src:glib2.0,src:gtk+3.0,src:openssl --apt-upgrade mrbayes --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=openssh/1:9.6p1-3ubuntu11 at-spi2-core/2.51.90-3 glib2.0/2.79.3-3ubuntu5 gtk+3.0/3.24.41-1.1ubuntu1 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-8.secgroup --name adt-noble-s390x-mrbayes-20240321-203947-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 128s autopkgtest [20:41:55]: testbed dpkg architecture: s390x 128s autopkgtest [20:41:55]: testbed apt version: 2.7.12 128s autopkgtest [20:41:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 129s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 130s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 130s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3779 kB] 131s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 131s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 131s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [663 kB] 131s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 131s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 131s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 131s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3987 kB] 131s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 131s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [45.1 kB] 131s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 133s Fetched 9159 kB in 3s (3196 kB/s) 133s Reading package lists... 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Calculating upgrade... 137s The following packages will be REMOVED: 137s libglib2.0-0 libssl3 137s The following NEW packages will be installed: 137s libglib2.0-0t64 libssl3t64 xdg-user-dirs 137s The following packages will be upgraded: 137s debianutils gir1.2-glib-2.0 libglib2.0-data openssh-client openssh-server 137s openssh-sftp-server openssl 137s 7 upgraded, 3 newly installed, 2 to remove and 0 not upgraded. 137s Need to get 6088 kB of archives. 137s After this operation, 902 kB of additional disk space will be used. 137s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x debianutils s390x 5.17 [90.1 kB] 137s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gir1.2-glib-2.0 s390x 2.79.3-3ubuntu5 [180 kB] 138s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libglib2.0-0t64 s390x 2.79.3-3ubuntu5 [1566 kB] 138s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB] 139s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssh-sftp-server s390x 1:9.6p1-3ubuntu11 [39.0 kB] 139s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssh-server s390x 1:9.6p1-3ubuntu11 [529 kB] 139s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssh-client s390x 1:9.6p1-3ubuntu11 [935 kB] 139s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB] 139s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 139s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x xdg-user-dirs s390x 0.18-1 [18.5 kB] 140s Preconfiguring packages ... 140s Fetched 6088 kB in 2s (2639 kB/s) 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 140s Preparing to unpack .../debianutils_5.17_s390x.deb ... 140s Unpacking debianutils (5.17) over (5.16) ... 140s Setting up debianutils (5.17) ... 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 140s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_s390x.deb ... 140s Unpacking gir1.2-glib-2.0:s390x (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 140s dpkg: libglib2.0-0:s390x: dependency problems, but removing anyway as you requested: 140s udisks2 depends on libglib2.0-0 (>= 2.77.0). 140s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 140s s390-tools depends on libglib2.0-0 (>= 2.77.0). 140s python3-gi depends on libglib2.0-0 (>= 2.77.0). 140s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 140s netplan.io depends on libglib2.0-0 (>= 2.70.0). 140s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 140s libxmlb2:s390x depends on libglib2.0-0 (>= 2.54.0). 140s libvolume-key1:s390x depends on libglib2.0-0 (>= 2.18.0). 140s libudisks2-0:s390x depends on libglib2.0-0 (>= 2.75.3). 140s libqrtr-glib0:s390x depends on libglib2.0-0 (>= 2.56). 140s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 140s libqmi-glib5:s390x depends on libglib2.0-0 (>= 2.54.0). 140s libpolkit-gobject-1-0:s390x depends on libglib2.0-0 (>= 2.38.0). 140s libpolkit-agent-1-0:s390x depends on libglib2.0-0 (>= 2.38.0). 140s libnetplan0:s390x depends on libglib2.0-0 (>= 2.75.3). 140s libmm-glib0:s390x depends on libglib2.0-0 (>= 2.62.0). 140s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 140s libmbim-glib4:s390x depends on libglib2.0-0 (>= 2.56). 140s libjson-glib-1.0-0:s390x depends on libglib2.0-0 (>= 2.75.3). 140s libjcat1:s390x depends on libglib2.0-0 (>= 2.75.3). 140s libgusb2:s390x depends on libglib2.0-0 (>= 2.75.3). 140s libgudev-1.0-0:s390x depends on libglib2.0-0 (>= 2.38.0). 140s libgirepository-1.0-1:s390x depends on libglib2.0-0 (>= 2.79.0). 140s libfwupd2:s390x depends on libglib2.0-0 (>= 2.79.0). 140s libblockdev3:s390x depends on libglib2.0-0 (>= 2.42.2). 140s libblockdev-utils3:s390x depends on libglib2.0-0 (>= 2.75.3). 140s libblockdev-swap3:s390x depends on libglib2.0-0 (>= 2.42.2). 140s libblockdev-part3:s390x depends on libglib2.0-0 (>= 2.42.2). 140s libblockdev-nvme3:s390x depends on libglib2.0-0 (>= 2.42.2). 140s libblockdev-mdraid3:s390x depends on libglib2.0-0 (>= 2.42.2). 140s libblockdev-loop3:s390x depends on libglib2.0-0 (>= 2.42.2). 140s libblockdev-fs3:s390x depends on libglib2.0-0 (>= 2.42.2). 140s libblockdev-crypto3:s390x depends on libglib2.0-0 (>= 2.42.2). 140s fwupd depends on libglib2.0-0 (>= 2.79.0). 140s bolt depends on libglib2.0-0 (>= 2.56.0). 140s 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 140s Removing libglib2.0-0:s390x (2.79.2-1~ubuntu1) ... 140s Selecting previously unselected package libglib2.0-0t64:s390x. 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52146 files and directories currently installed.) 140s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_s390x.deb ... 140s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:s390x.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 140s removed '/var/lib/dpkg/info/libglib2.0-0:s390x.postrm' 140s Unpacking libglib2.0-0t64:s390x (2.79.3-3ubuntu5) ... 140s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ... 140s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 140s Preparing to unpack .../openssh-sftp-server_1%3a9.6p1-3ubuntu11_s390x.deb ... 140s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 140s Preparing to unpack .../openssh-server_1%3a9.6p1-3ubuntu11_s390x.deb ... 140s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 140s Preparing to unpack .../openssh-client_1%3a9.6p1-3ubuntu11_s390x.deb ... 140s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 140s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 140s wget depends on libssl3 (>= 3.0.0). 140s tnftp depends on libssl3 (>= 3.0.0). 140s tcpdump depends on libssl3 (>= 3.0.0). 140s systemd-resolved depends on libssl3 (>= 3.0.0). 140s systemd depends on libssl3 (>= 3.0.0). 140s sudo depends on libssl3 (>= 3.0.0). 140s s390-tools depends on libssl3 (>= 3.0.0). 140s rsync depends on libssl3 (>= 3.0.0). 140s python3-cryptography depends on libssl3 (>= 3.0.0). 140s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 140s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 140s libssh-4:s390x depends on libssl3 (>= 3.0.0). 140s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 140s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 140s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 140s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 140s libnvme1 depends on libssl3 (>= 3.0.0). 140s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 140s libkmod2:s390x depends on libssl3 (>= 3.0.0). 140s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 140s libcurl4:s390x depends on libssl3 (>= 3.0.0). 140s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 140s kmod depends on libssl3 (>= 3.0.0). 140s dhcpcd-base depends on libssl3 (>= 3.0.0). 140s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 140s 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 140s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 140s Selecting previously unselected package libssl3t64:s390x. 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 141s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ... 141s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ... 141s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 141s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 141s Selecting previously unselected package xdg-user-dirs. 141s Preparing to unpack .../xdg-user-dirs_0.18-1_s390x.deb ... 141s Unpacking xdg-user-dirs (0.18-1) ... 141s Setting up xdg-user-dirs (0.18-1) ... 141s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ... 141s Setting up openssh-client (1:9.6p1-3ubuntu11) ... 141s Setting up libglib2.0-0t64:s390x (2.79.3-3ubuntu5) ... 141s No schema files found: doing nothing. 141s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 141s Setting up gir1.2-glib-2.0:s390x (2.79.3-3ubuntu5) ... 141s Setting up openssl (3.0.13-0ubuntu2) ... 141s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ... 141s Setting up openssh-server (1:9.6p1-3ubuntu11) ... 141s Replacing config file /etc/ssh/sshd_config with new version 142s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket. 143s Processing triggers for ufw (0.36.2-5) ... 143s Processing triggers for man-db (2.12.0-3) ... 144s Processing triggers for libc-bin (2.39-0ubuntu2) ... 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s Unknown architecture, assuming PC-style ttyS0 145s sh: Attempting to set up Debian/Ubuntu apt sources automatically 145s sh: Distribution appears to be Ubuntu 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 147s eatmydata is already the newest version (131-1). 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s dbus is already the newest version (1.14.10-4ubuntu1). 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s rng-tools-debian is already the newest version (2.4). 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s The following packages will be REMOVED: 148s cloud-init* python3-configobj* python3-debconf* 148s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 148s After this operation, 3252 kB disk space will be freed. 148s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52187 files and directories currently installed.) 148s Removing cloud-init (24.1.1-0ubuntu1) ... 149s Removing python3-configobj (5.0.8-3) ... 149s Removing python3-debconf (1.5.86) ... 149s Processing triggers for man-db (2.12.0-3) ... 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51798 files and directories currently installed.) 149s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 150s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 150s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 150s invoke-rc.d: policy-rc.d denied execution of try-restart. 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s linux-generic is already the newest version (6.8.0-11.11+1). 150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 151s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 151s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 151s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 152s Reading package lists... 152s Reading package lists... 153s Building dependency tree... 153s Reading state information... 153s Calculating upgrade... 153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 153s Reading package lists... 153s Building dependency tree... 153s Reading state information... 153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 154s autopkgtest [20:42:21]: rebooting testbed after setup commands that affected boot 172s autopkgtest [20:42:39]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 176s autopkgtest [20:42:43]: @@@@@@@@@@@@@@@@@@@@ apt-source mrbayes 181s Get:1 http://ftpmaster.internal/ubuntu noble/universe mrbayes 3.2.7a-7 (dsc) [2184 B] 181s Get:2 http://ftpmaster.internal/ubuntu noble/universe mrbayes 3.2.7a-7 (tar) [9819 kB] 181s Get:3 http://ftpmaster.internal/ubuntu noble/universe mrbayes 3.2.7a-7 (diff) [7380 B] 181s gpgv: Signature made Sun Jan 14 13:54:21 2024 UTC 181s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 181s gpgv: issuer "tille@debian.org" 181s gpgv: Can't check signature: No public key 181s dpkg-source: warning: cannot verify inline signature for ./mrbayes_3.2.7a-7.dsc: no acceptable signature found 181s autopkgtest [20:42:48]: testing package mrbayes version 3.2.7a-7 182s autopkgtest [20:42:49]: build not needed 202s autopkgtest [20:43:09]: test run-unit-test: preparing testbed 205s Reading package lists... 206s Building dependency tree... 206s Reading state information... 206s Starting pkgProblemResolver with broken count: 0 206s Starting 2 pkgProblemResolver with broken count: 0 206s Done 206s The following additional packages will be installed: 206s libatomic1 libclang-common-17-dev libclang-cpp17 libclc-17 libclc-17-dev 206s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libevent-pthreads-2.1-7 206s libfabric1 libhmsbeagle1v5 libhwloc-plugins libhwloc15 libllvm17 206s libllvmspirvlib17 libmunge2 libopenmpi3 libpciaccess0 libpmix2 librdmacm1t64 206s libxnvctrl0 mesa-opencl-icd mpi-default-bin mrbayes mrbayes-doc mrbayes-mpi 206s ocl-icd-libopencl1 openmpi-bin openmpi-common ssh 206s Suggested packages: 206s mpi-default gfortran | fortran-compiler 206s Recommended packages: 206s libclang-rt-17-dev 206s The following NEW packages will be installed: 206s autopkgtest-satdep libatomic1 libclang-common-17-dev libclang-cpp17 206s libclc-17 libclc-17-dev libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 206s libevent-pthreads-2.1-7 libfabric1 libhmsbeagle1v5 libhwloc-plugins 206s libhwloc15 libllvm17 libllvmspirvlib17 libmunge2 libopenmpi3 libpciaccess0 206s libpmix2 librdmacm1t64 libxnvctrl0 mesa-opencl-icd mpi-default-bin mrbayes 206s mrbayes-doc mrbayes-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common ssh 206s 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. 206s Need to get 82.5 MB/82.5 MB of archives. 206s After this operation, 445 MB of additional disk space will be used. 206s Get:1 /tmp/autopkgtest.MeeqLy/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [712 B] 206s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 206s Get:3 http://ftpmaster.internal/ubuntu noble/universe s390x libclang-common-17-dev all 1:17.0.6-5build1 [690 kB] 207s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libllvm17 s390x 1:17.0.6-5build1 [31.2 MB] 212s Get:5 http://ftpmaster.internal/ubuntu noble/universe s390x libclang-cpp17 s390x 1:17.0.6-5build1 [15.3 MB] 212s Get:6 http://ftpmaster.internal/ubuntu noble/universe s390x libclc-17-dev all 1:17.0.6-5build1 [60.7 kB] 212s Get:7 http://ftpmaster.internal/ubuntu noble/universe s390x libclc-17 all 1:17.0.6-5build1 [9972 kB] 213s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-amdgpu1 s390x 2.4.120-2 [21.1 kB] 213s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-nouveau2 s390x 2.4.120-2 [18.5 kB] 213s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-radeon1 s390x 2.4.120-2 [22.7 kB] 213s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libevent-pthreads-2.1-7 s390x 2.1.12-stable-9 [7692 B] 213s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x librdmacm1t64 s390x 50.0-2 [74.1 kB] 213s Get:13 http://ftpmaster.internal/ubuntu noble/universe s390x libfabric1 s390x 1.17.0-3build1 [566 kB] 213s Get:14 http://ftpmaster.internal/ubuntu noble/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1 [39.1 kB] 213s Get:15 http://ftpmaster.internal/ubuntu noble/universe s390x libllvmspirvlib17 s390x 17.0.0-4 [855 kB] 213s Get:16 http://ftpmaster.internal/ubuntu noble/universe s390x mesa-opencl-icd s390x 24.0.1-1ubuntu1 [16.4 MB] 214s Get:17 http://ftpmaster.internal/ubuntu noble/universe s390x libhmsbeagle1v5 s390x 3.1.2+dfsg-13 [122 kB] 214s Get:18 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc15 s390x 2.10.0-1 [174 kB] 214s Get:19 http://ftpmaster.internal/ubuntu noble/universe s390x libmunge2 s390x 0.5.15-3ubuntu1 [17.3 kB] 214s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libpciaccess0 s390x 0.17-3 [18.5 kB] 214s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu1 [11.7 kB] 214s Get:22 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-plugins s390x 2.10.0-1 [16.1 kB] 214s Get:23 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix2 s390x 5.0.1-4 [722 kB] 214s Get:24 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi3 s390x 4.1.6-5ubuntu1 [3024 kB] 214s Get:25 http://ftpmaster.internal/ubuntu noble/universe s390x mrbayes s390x 3.2.7a-7 [826 kB] 214s Get:26 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-common all 4.1.6-5ubuntu1 [178 kB] 214s Get:27 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-bin s390x 4.1.6-5ubuntu1 [92.5 kB] 214s Get:28 http://ftpmaster.internal/ubuntu noble/universe s390x mpi-default-bin s390x 1.15 [2338 B] 214s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x ssh all 1:9.6p1-3ubuntu2 [4654 B] 214s Get:30 http://ftpmaster.internal/ubuntu noble/universe s390x mrbayes-mpi s390x 3.2.7a-7 [751 kB] 214s Get:31 http://ftpmaster.internal/ubuntu noble/universe s390x mrbayes-doc all 3.2.7a-7 [1322 kB] 214s Fetched 82.5 MB in 8s (10.4 MB/s) 214s Selecting previously unselected package libatomic1:s390x. 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51743 files and directories currently installed.) 215s Preparing to unpack .../00-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 215s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 215s Selecting previously unselected package libclang-common-17-dev. 215s Preparing to unpack .../01-libclang-common-17-dev_1%3a17.0.6-5build1_all.deb ... 215s Unpacking libclang-common-17-dev (1:17.0.6-5build1) ... 215s Selecting previously unselected package libllvm17:s390x. 215s Preparing to unpack .../02-libllvm17_1%3a17.0.6-5build1_s390x.deb ... 215s Unpacking libllvm17:s390x (1:17.0.6-5build1) ... 216s Selecting previously unselected package libclang-cpp17. 216s Preparing to unpack .../03-libclang-cpp17_1%3a17.0.6-5build1_s390x.deb ... 216s Unpacking libclang-cpp17 (1:17.0.6-5build1) ... 216s Selecting previously unselected package libclc-17-dev. 216s Preparing to unpack .../04-libclc-17-dev_1%3a17.0.6-5build1_all.deb ... 216s Unpacking libclc-17-dev (1:17.0.6-5build1) ... 216s Selecting previously unselected package libclc-17. 216s Preparing to unpack .../05-libclc-17_1%3a17.0.6-5build1_all.deb ... 216s Unpacking libclc-17 (1:17.0.6-5build1) ... 217s Selecting previously unselected package libdrm-amdgpu1:s390x. 217s Preparing to unpack .../06-libdrm-amdgpu1_2.4.120-2_s390x.deb ... 217s Unpacking libdrm-amdgpu1:s390x (2.4.120-2) ... 217s Selecting previously unselected package libdrm-nouveau2:s390x. 217s Preparing to unpack .../07-libdrm-nouveau2_2.4.120-2_s390x.deb ... 217s Unpacking libdrm-nouveau2:s390x (2.4.120-2) ... 217s Selecting previously unselected package libdrm-radeon1:s390x. 217s Preparing to unpack .../08-libdrm-radeon1_2.4.120-2_s390x.deb ... 217s Unpacking libdrm-radeon1:s390x (2.4.120-2) ... 217s Selecting previously unselected package libevent-pthreads-2.1-7:s390x. 217s Preparing to unpack .../09-libevent-pthreads-2.1-7_2.1.12-stable-9_s390x.deb ... 217s Unpacking libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ... 217s Selecting previously unselected package librdmacm1t64:s390x. 217s Preparing to unpack .../10-librdmacm1t64_50.0-2_s390x.deb ... 217s Unpacking librdmacm1t64:s390x (50.0-2) ... 217s Selecting previously unselected package libfabric1:s390x. 217s Preparing to unpack .../11-libfabric1_1.17.0-3build1_s390x.deb ... 217s Unpacking libfabric1:s390x (1.17.0-3build1) ... 217s Selecting previously unselected package ocl-icd-libopencl1:s390x. 217s Preparing to unpack .../12-ocl-icd-libopencl1_2.3.2-1_s390x.deb ... 217s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1) ... 217s Selecting previously unselected package libllvmspirvlib17:s390x. 217s Preparing to unpack .../13-libllvmspirvlib17_17.0.0-4_s390x.deb ... 217s Unpacking libllvmspirvlib17:s390x (17.0.0-4) ... 217s Selecting previously unselected package mesa-opencl-icd:s390x. 217s Preparing to unpack .../14-mesa-opencl-icd_24.0.1-1ubuntu1_s390x.deb ... 217s Unpacking mesa-opencl-icd:s390x (24.0.1-1ubuntu1) ... 217s Selecting previously unselected package libhmsbeagle1v5:s390x. 217s Preparing to unpack .../15-libhmsbeagle1v5_3.1.2+dfsg-13_s390x.deb ... 217s Unpacking libhmsbeagle1v5:s390x (3.1.2+dfsg-13) ... 217s Selecting previously unselected package libhwloc15:s390x. 217s Preparing to unpack .../16-libhwloc15_2.10.0-1_s390x.deb ... 217s Unpacking libhwloc15:s390x (2.10.0-1) ... 217s Selecting previously unselected package libmunge2:s390x. 217s Preparing to unpack .../17-libmunge2_0.5.15-3ubuntu1_s390x.deb ... 217s Unpacking libmunge2:s390x (0.5.15-3ubuntu1) ... 217s Selecting previously unselected package libpciaccess0:s390x. 217s Preparing to unpack .../18-libpciaccess0_0.17-3_s390x.deb ... 217s Unpacking libpciaccess0:s390x (0.17-3) ... 217s Selecting previously unselected package libxnvctrl0:s390x. 217s Preparing to unpack .../19-libxnvctrl0_510.47.03-0ubuntu1_s390x.deb ... 217s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu1) ... 217s Selecting previously unselected package libhwloc-plugins:s390x. 217s Preparing to unpack .../20-libhwloc-plugins_2.10.0-1_s390x.deb ... 217s Unpacking libhwloc-plugins:s390x (2.10.0-1) ... 217s Selecting previously unselected package libpmix2:s390x. 217s Preparing to unpack .../21-libpmix2_5.0.1-4_s390x.deb ... 217s Unpacking libpmix2:s390x (5.0.1-4) ... 217s Selecting previously unselected package libopenmpi3:s390x. 217s Preparing to unpack .../22-libopenmpi3_4.1.6-5ubuntu1_s390x.deb ... 217s Unpacking libopenmpi3:s390x (4.1.6-5ubuntu1) ... 218s Selecting previously unselected package mrbayes. 218s Preparing to unpack .../23-mrbayes_3.2.7a-7_s390x.deb ... 218s Unpacking mrbayes (3.2.7a-7) ... 218s Selecting previously unselected package openmpi-common. 218s Preparing to unpack .../24-openmpi-common_4.1.6-5ubuntu1_all.deb ... 218s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 218s Selecting previously unselected package openmpi-bin. 218s Preparing to unpack .../25-openmpi-bin_4.1.6-5ubuntu1_s390x.deb ... 218s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 218s Selecting previously unselected package mpi-default-bin. 218s Preparing to unpack .../26-mpi-default-bin_1.15_s390x.deb ... 218s Unpacking mpi-default-bin (1.15) ... 218s Selecting previously unselected package ssh. 218s Preparing to unpack .../27-ssh_1%3a9.6p1-3ubuntu2_all.deb ... 218s Unpacking ssh (1:9.6p1-3ubuntu2) ... 218s Selecting previously unselected package mrbayes-mpi. 218s Preparing to unpack .../28-mrbayes-mpi_3.2.7a-7_s390x.deb ... 218s Unpacking mrbayes-mpi (3.2.7a-7) ... 218s Selecting previously unselected package mrbayes-doc. 218s Preparing to unpack .../29-mrbayes-doc_3.2.7a-7_all.deb ... 218s Unpacking mrbayes-doc (3.2.7a-7) ... 218s Selecting previously unselected package autopkgtest-satdep. 218s Preparing to unpack .../30-1-autopkgtest-satdep.deb ... 218s Unpacking autopkgtest-satdep (0) ... 218s Setting up libpciaccess0:s390x (0.17-3) ... 218s Setting up libdrm-nouveau2:s390x (2.4.120-2) ... 218s Setting up ssh (1:9.6p1-3ubuntu2) ... 218s Setting up libdrm-radeon1:s390x (2.4.120-2) ... 218s Setting up mrbayes-doc (3.2.7a-7) ... 218s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu1) ... 218s Setting up libmunge2:s390x (0.5.15-3ubuntu1) ... 218s Setting up libclc-17-dev (1:17.0.6-5build1) ... 218s Setting up libhwloc15:s390x (2.10.0-1) ... 218s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ... 218s Setting up ocl-icd-libopencl1:s390x (2.3.2-1) ... 218s Setting up libclang-common-17-dev (1:17.0.6-5build1) ... 218s Setting up libclc-17 (1:17.0.6-5build1) ... 218s Setting up openmpi-common (4.1.6-5ubuntu1) ... 218s Setting up librdmacm1t64:s390x (50.0-2) ... 218s Setting up libllvm17:s390x (1:17.0.6-5build1) ... 218s Setting up libllvmspirvlib17:s390x (17.0.0-4) ... 218s Setting up libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ... 218s Setting up libdrm-amdgpu1:s390x (2.4.120-2) ... 218s Setting up libfabric1:s390x (1.17.0-3build1) ... 218s Setting up libhwloc-plugins:s390x (2.10.0-1) ... 218s Setting up libclang-cpp17 (1:17.0.6-5build1) ... 218s Setting up mesa-opencl-icd:s390x (24.0.1-1ubuntu1) ... 218s Setting up libpmix2:s390x (5.0.1-4) ... 218s Setting up libopenmpi3:s390x (4.1.6-5ubuntu1) ... 218s Setting up libhmsbeagle1v5:s390x (3.1.2+dfsg-13) ... 218s Setting up mrbayes (3.2.7a-7) ... 218s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 218s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 218s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 218s Setting up mpi-default-bin (1.15) ... 218s Setting up mrbayes-mpi (3.2.7a-7) ... 218s Setting up autopkgtest-satdep (0) ... 218s Processing triggers for man-db (2.12.0-3) ... 218s Processing triggers for libc-bin (2.39-0ubuntu2) ... 221s (Reading database ... 52890 files and directories currently installed.) 221s Removing autopkgtest-satdep (0) ... 222s autopkgtest [20:43:29]: test run-unit-test: [----------------------- 222s 222s 222s MrBayes 3.2.7a s390x 222s 222s (Bayesian Analysis of Phylogeny) 222s 222s Distributed under the GNU General Public License 222s 222s 222s Type "help" or "help " for information 222s on the commands that are available. 222s 222s Type "about" for authorship and general 222s information about the program. 222s 222s 222s 222s Executing file "avian_ovomucoids.nex" 222s DOS line termination 222s Longest line length = 129 222s Parsing file 222s Expecting NEXUS formatted file 222s Reading data block 222s Allocated taxon set 222s Allocated matrix 222s Defining new matrix with 89 taxa and 88 characters 222s Data is Protein 222s Missing data coded as ? 222s Gaps coded as - 222s Matching characters coded as . 222s Taxon 1 -> Struthio_camelus 222s Taxon 2 -> Rhea_americana 222s Taxon 3 -> Pterocnemia_pennata 222s Taxon 4 -> Casuarius_casuarius 222s Taxon 5 -> Dromaius_novaehollandiae 222s Taxon 6 -> Nothoprocta_cinerascens 222s Taxon 7 -> Eudromia_elegans 222s Taxon 8 -> Pygoscelis_adeliae_f 222s Taxon 9 -> Pygoscelis_adeliae_y 222s Taxon 10 -> Spheniscus_humboldti 222s Taxon 11 -> Phalacrocorax_sulcirostris 222s Taxon 12 -> Anhinga_novaehollandeae 222s Taxon 13 -> Nycticorax_nycticorax 222s Taxon 14 -> Chauna_chavaria 222s Taxon 15 -> Anseranas_semipalmata 222s Taxon 16 -> Dendrocygna_arcuata 222s Taxon 17 -> Dendrocygna_autumnalis 222s Taxon 18 -> Dendrocygna_eytoni_d 222s Taxon 19 -> Dendrocygna_eytoni_e 222s Taxon 20 -> Dendrocygna_viduata 222s Taxon 21 -> Coscoroba_coscoroba 222s Taxon 22 -> Cygnus_atratus 222s Taxon 23 -> Goose 222s Taxon 24 -> Anser_indicus 222s Taxon 25 -> Branta_canadensis 222s Taxon 26 -> Cereopsis_novaehollandiae 222s Taxon 27 -> Chloephaga_picta 222s Taxon 28 -> Duck 222s Taxon 29 -> Anas_platyrhynchos 222s Taxon 30 -> Megapodius_freycinet 222s Taxon 31 -> Leipoa_ocellata 222s Taxon 32 -> Ortalis_vetula 222s Taxon 33 -> Penelope_jacquacu 222s Taxon 34 -> Penelope_superciliaris 222s Taxon 35 -> Bonasa_umbellus 222s Taxon 36 -> Tympanuchus_cupido 222s Taxon 37 -> Oreortyx_pictus 222s Taxon 38 -> Callipepla_squamata_n 222s Taxon 39 -> Callipepla_squamata_s 222s Taxon 40 -> Lophortyx_californicus 222s Taxon 41 -> Colinus_virginianus 222s Taxon 42 -> Cyrtonyx_montezumae_l 222s Taxon 43 -> Cyrtonyx_montezumae_s 222s Taxon 44 -> Alectoris_chukar 222s Taxon 45 -> Alectoris_rufa 222s Taxon 46 -> Francolinus_afer 222s Taxon 47 -> Francolinus_erckelii 222s Taxon 48 -> Francolinus_coqui_v 222s Taxon 49 -> Francolinus_coqui_a 222s Taxon 50 -> Francolinus_francolinus_a 222s Taxon 51 -> Francolinus_francolinus_v 222s Taxon 52 -> Francolinus_pondicerianus 222s Taxon 53 -> Perdix_perdix 222s Taxon 54 -> Coturnix_delegorguei 222s Taxon 55 -> Coturnix_coturnix_japonica_1 222s Taxon 56 -> Coturnix_coturnix_japonica_2 222s Taxon 57 -> Arborophilia_torqueola 222s Taxon 58 -> Bambusicola_thoracica 222s Taxon 59 -> Tragopan_satyra 222s Taxon 60 -> Tragopan_temmincki 222s Taxon 61 -> Lophophorus_impejanus 222s Taxon 62 -> Crossoptilon_auritum 222s Taxon 63 -> Lophura_edwardsi 222s Taxon 64 -> Lophura_ignita 222s Taxon 65 -> Gallus_gallus 222s Taxon 66 -> Grey_jungle_fowl 222s Taxon 67 -> Phasianus_colchicus 222s Taxon 68 -> Syrmaticus_ellioti 222s Taxon 69 -> Syrmaticus_reevesii 222s Taxon 70 -> Chrysolophus_amherstiae 222s Taxon 71 -> Polyplectron_bicalcaratum 222s Taxon 72 -> Argusianus_argus_argus 222s Taxon 73 -> Pavo_cristatus 222s Taxon 74 -> Afropavo_congensis 222s Taxon 75 -> Numida_meleagris 222s Taxon 76 -> Acryllium_vulturinum 222s Taxon 77 -> Meleagris_gallopavo 222s Taxon 78 -> Grus_carunculatus 222s Taxon 79 -> Anthropoides_virgo 222s Taxon 80 -> Grus_vipio 222s Taxon 81 -> Fulica_atra 222s Taxon 82 -> Vanellus_spinosus 222s Taxon 83 -> Larus_rudibundus 223s Taxon 84 -> Turnix_sylvatica 223s Taxon 85 -> Gallirallus_australis 223s Taxon 86 -> Geococcyx_californianus 223s Taxon 87 -> Dacelo_novaeguineae 223s Taxon 88 -> Carpococcyx_renauldi 223s Taxon 89 -> Podargus_strigoides 223s Successfully read matrix 223s Setting default partition (does not divide up characters) 223s Setting model defaults 223s Seed (for generating default start values) = 1711053809 223s Setting output file names to "avian_ovomucoids.nex.run." 223s Exiting data block 223s Reached end of file 223s 223s Tasks completed, exiting program because mode is noninteractive 223s To return control to the command line after completion of file processing, 223s set mode to interactive with 'mb -i ' (i is for interactive) 223s or use 'set mode=interactive' 223s 223s 223s 223s MrBayes 3.2.7a s390x 223s 223s (Bayesian Analysis of Phylogeny) 223s 223s Distributed under the GNU General Public License 223s 223s 223s Type "help" or "help " for information 223s on the commands that are available. 223s 223s Type "about" for authorship and general 223s information about the program. 223s 223s 223s 223s Executing file "codon.nex" 223s DOS line termination 223s Longest line length = 88 223s Parsing file 223s Expecting NEXUS formatted file 223s Reading mrbayes block 223s Setting autoclose to yes 223s Setting nowarnings to yes 223s 223s Executing file "replicase.nex"... 223s 223s DOS line termination 223s Longest line length = 970 223s Parsing file 223s Expecting NEXUS formatted file 223s Reading data block 223s Allocated taxon set 223s Allocated matrix 223s Defining new matrix with 9 taxa and 720 characters 223s Data is Rna 223s Data matrix is not interleaved 223s Gaps coded as - 223s Missing data coded as ? 223s Taxon 1 -> FR 223s Taxon 2 -> MS2 223s Taxon 3 -> GA 223s Taxon 4 -> SP 223s Taxon 5 -> NL95 223s Taxon 6 -> M11 223s Taxon 7 -> MX1 223s Taxon 8 -> QB 223s Taxon 9 -> PP7 223s Successfully read matrix 223s Setting default partition (does not divide up characters) 223s Setting model defaults 223s Seed (for generating default start values) = 1711053809 223s Setting output file names to "replicase.nex.run." 223s Exiting data block 223s Reached end of file 223s 223s Returning execution to calling file ... 223s 223s Setting Nucmodel to Codon 223s Set state frequency prior to default 223s Successfully set likelihood model parameters 223s Setting Nucmodel to Codon 223s Set state frequency prior to default 223s Setting Omegavar to Ny98 223s Successfully set likelihood model parameters 223s Reporting positive selection (if applicable) 223s Reporting site omega values (if applicable) 223s Setting Nucmodel to Codon 223s Set state frequency prior to default 223s Setting Omegavar to M3 223s Successfully set likelihood model parameters 223s Reporting positive selection (if applicable) 223s Setting print frequency to 10 223s Successfully set chain parameters 223s Exiting mrbayes block 223s Reached end of file 223s 223s Tasks completed, exiting program because mode is noninteractive 223s To return control to the command line after completion of file processing, 223s set mode to interactive with 'mb -i ' (i is for interactive) 223s or use 'set mode=interactive' 223s 223s 223s 223s MrBayes 3.2.7a s390x 223s 223s (Bayesian Analysis of Phylogeny) 223s 223s Distributed under the GNU General Public License 223s 223s 223s Type "help" or "help " for information 223s on the commands that are available. 223s 223s Type "about" for authorship and general 223s information about the program. 223s 223s 223s 223s Executing file "cynmix.nex" 223s DOS line termination 223s Longest line length = 217 223s Parsing file 223s Expecting NEXUS formatted file 223s Reading data block 223s Allocated taxon set 223s Allocated matrix 223s Defining new matrix with 32 taxa and 3246 characters 223s Data is Mixed 223s Data for partition 1 is Standard 223s Data for partition 2 is Dna 223s There are a total of 2 default data divisions 223s Data matrix is interleaved 223s Gaps coded as - 223s Missing data coded as ? 223s Taxon 1 -> Ibalia 223s Taxon 2 -> Synergus 223s Taxon 3 -> Periclistus 223s Taxon 4 -> Ceroptres 223s Taxon 5 -> Synophromorpha 223s Taxon 6 -> Xestophanes 223s Taxon 7 -> Diastrophus 223s Taxon 8 -> Gonaspis 223s Taxon 9 -> Liposthenes_gle 223s Taxon 10 -> Liposthenes_ker 223s Taxon 11 -> Antistrophus 223s Taxon 12 -> Rhodus 223s Taxon 13 -> Hedickiana 223s Taxon 14 -> Neaylax 223s Taxon 15 -> Isocolus 223s Taxon 16 -> Aulacidea 223s Taxon 17 -> Panteliella 223s Taxon 18 -> Barbotinia 223s Taxon 19 -> Aylax 223s Taxon 20 -> Iraella 223s Taxon 21 -> Timaspis 223s Taxon 22 -> Phanacis_1 223s Taxon 23 -> Phanacis_2 223s Taxon 24 -> Eschatocerus 223s Taxon 25 -> Diplolepis 223s Taxon 26 -> Pediaspis 223s Taxon 27 -> Plagiotrochus 223s Taxon 28 -> Andricus 223s Taxon 29 -> Neuroterus 223s Taxon 30 -> Biorhiza 223s Taxon 31 -> Parnips 223s Taxon 32 -> Paramblynotus 223s Successfully read matrix 223s Matrix contains polymorphisms, interpreted as ambiguity 223s Setting default partition, dividing characters into 2 parts 223s Setting model defaults 223s Seed (for generating default start values) = 1711053809 223s Setting output file names to "cynmix.nex.run." 223s Exiting data block 223s Reading mrbayes block 223s Defining charset called 'morphology' 223s Defining charset called 'COI' 223s Defining charset called 'EF1a' 223s Defining charset called 'LWRh' 223s Defining charset called '28S' 223s Defining partition called 'favored' 223s Exiting mrbayes block 223s Reached end of file 223s 223s Tasks completed, exiting program because mode is noninteractive 223s To return control to the command line after completion of file processing, 223s set mode to interactive with 'mb -i ' (i is for interactive) 223s or use 'set mode=interactive' 223s 223s 223s 223s MrBayes 3.2.7a s390x 223s 223s (Bayesian Analysis of Phylogeny) 223s 223s Distributed under the GNU General Public License 223s 223s 223s Type "help" or "help " for information 223s on the commands that are available. 223s 223s Type "about" for authorship and general 223s information about the program. 223s 223s 223s 223s Executing file "finch.nex" 223s DOS line termination 223s Longest line length = 665 223s Parsing file 223s Expecting NEXUS formatted file 223s Reading data block 223s Allocated taxon set 223s Allocated matrix 223s Defining new matrix with 4 taxa and 16119 characters 223s Data is Dna 223s Gaps coded as - 223s Missing data coded as ? 223s Matching characters coded as . 223s Taxon 1 -> Q097 223s Taxon 2 -> W097 223s Taxon 3 -> B097 223s Taxon 4 -> O097 223s Successfully read matrix 223s Setting default partition (does not divide up characters) 223s Setting model defaults 223s Seed (for generating default start values) = 1711053809 223s Setting output file names to "finch.nex.run." 223s Exiting data block 223s Reading mrbayes block 223s Setting autoclose to yes 223s Setting nowarnings to yes 223s Setting outgroup to taxon "O097" 223s Defining charset called 'locus097' 223s Defining charset called 'locus098' 223s Defining charset called 'locus118' 223s Defining charset called 'locus119' 223s Defining charset called 'locus120' 223s Defining charset called 'locus122' 223s Defining charset called 'locus130' 223s Defining charset called 'locus104' 223s Defining charset called 'locus129' 223s Defining charset called 'locus143' 223s Defining charset called 'locus146' 223s Defining charset called 'locus111' 223s Defining charset called 'locus135' 223s Defining charset called 'locus148' 223s Defining charset called 'locus182' 223s Defining charset called 'locus200' 223s Defining charset called 'locus209' 223s Defining charset called 'locusB098' 223s Defining charset called 'locus184' 223s Defining charset called 'locus185' 223s Defining charset called 'locus186' 223s Defining charset called 'locus187' 223s Defining charset called 'locus188' 223s Defining charset called 'locus192' 223s Defining charset called 'locus193' 223s Defining charset called 'locus195' 223s Defining charset called 'locus198' 223s Defining charset called 'locus199' 223s Defining charset called 'locusB200' 223s Defining charset called 'locus103' 223s Defining partition called 'genes' 223s Setting genes as the partition, dividing characters into 30 parts. 223s Setting model defaults 223s Seed (for generating default start values) = 1273981129 223s Defining speciespartition called 'test' 223s Setting test as the speciespartition, dividing taxa into 4 species. 223s Setting model defaults 223s Seed (for generating default start values) = 932365076 223s Unlinking 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 1 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 2 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 3 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 4 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 5 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 6 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 7 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 8 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 9 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 10 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 11 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 12 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 13 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 14 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 15 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 16 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 17 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 18 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 19 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 20 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 21 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 22 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 23 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 24 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 25 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 26 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 27 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 28 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 29 223s Setting Brlenspr to Clock:Speciestreecoalescence for partition 30 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting Topologypr to Speciestree for partition 1 223s Setting Topologypr to Speciestree for partition 2 223s Setting Topologypr to Speciestree for partition 3 223s Setting Topologypr to Speciestree for partition 4 223s Setting Topologypr to Speciestree for partition 5 223s Setting Topologypr to Speciestree for partition 6 223s Setting Topologypr to Speciestree for partition 7 223s Setting Topologypr to Speciestree for partition 8 223s Setting Topologypr to Speciestree for partition 9 223s Setting Topologypr to Speciestree for partition 10 223s Setting Topologypr to Speciestree for partition 11 223s Setting Topologypr to Speciestree for partition 12 223s Setting Topologypr to Speciestree for partition 13 223s Setting Topologypr to Speciestree for partition 14 223s Setting Topologypr to Speciestree for partition 15 223s Setting Topologypr to Speciestree for partition 16 223s Setting Topologypr to Speciestree for partition 17 223s Setting Topologypr to Speciestree for partition 18 223s Setting Topologypr to Speciestree for partition 19 223s Setting Topologypr to Speciestree for partition 20 223s Setting Topologypr to Speciestree for partition 21 223s Setting Topologypr to Speciestree for partition 22 223s Setting Topologypr to Speciestree for partition 23 223s Setting Topologypr to Speciestree for partition 24 223s Setting Topologypr to Speciestree for partition 25 223s Setting Topologypr to Speciestree for partition 26 223s Setting Topologypr to Speciestree for partition 27 223s Setting Topologypr to Speciestree for partition 28 223s Setting Topologypr to Speciestree for partition 29 223s Setting Topologypr to Speciestree for partition 30 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting Popvarpr to Variable for partition 1 223s Setting Popvarpr to Variable for partition 2 223s Setting Popvarpr to Variable for partition 3 223s Setting Popvarpr to Variable for partition 4 223s Setting Popvarpr to Variable for partition 5 223s Setting Popvarpr to Variable for partition 6 223s Setting Popvarpr to Variable for partition 7 223s Setting Popvarpr to Variable for partition 8 223s Setting Popvarpr to Variable for partition 9 223s Setting Popvarpr to Variable for partition 10 223s Setting Popvarpr to Variable for partition 11 223s Setting Popvarpr to Variable for partition 12 223s Setting Popvarpr to Variable for partition 13 223s Setting Popvarpr to Variable for partition 14 223s Setting Popvarpr to Variable for partition 15 223s Setting Popvarpr to Variable for partition 16 223s Setting Popvarpr to Variable for partition 17 223s Setting Popvarpr to Variable for partition 18 223s Setting Popvarpr to Variable for partition 19 223s Setting Popvarpr to Variable for partition 20 223s Setting Popvarpr to Variable for partition 21 223s Setting Popvarpr to Variable for partition 22 223s Setting Popvarpr to Variable for partition 23 223s Setting Popvarpr to Variable for partition 24 223s Setting Popvarpr to Variable for partition 25 223s Setting Popvarpr to Variable for partition 26 223s Setting Popvarpr to Variable for partition 27 223s Setting Popvarpr to Variable for partition 28 223s Setting Popvarpr to Variable for partition 29 223s Setting Popvarpr to Variable for partition 30 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 1 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 2 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 3 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 4 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 5 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 6 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 7 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 8 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 9 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 10 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 11 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 12 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 13 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 14 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 15 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 16 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 17 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 18 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 19 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 20 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 21 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 22 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 23 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 24 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 25 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 26 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 27 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 28 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 29 223s Setting Popsizepr to Gamma(1.00,100.00) for partition 30 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Exiting mrbayes block 223s Reached end of file 223s 223s Tasks completed, exiting program because mode is noninteractive 223s To return control to the command line after completion of file processing, 223s set mode to interactive with 'mb -i ' (i is for interactive) 223s or use 'set mode=interactive' 223s 223s 223s 223s MrBayes 3.2.7a s390x 223s 223s (Bayesian Analysis of Phylogeny) 223s 223s Distributed under the GNU General Public License 223s 223s 223s Type "help" or "help " for information 223s on the commands that are available. 223s 223s Type "about" for authorship and general 223s information about the program. 223s 223s 223s 223s Executing file "hymfossil.nex" 223s UNIX line termination 223s Longest line length = 1117 223s Parsing file 223s Expecting NEXUS formatted file 223s Reading data block 223s Allocated taxon set 223s Allocated matrix 223s Defining new matrix with 114 taxa and 5449 characters 223s Data is Mixed 223s Data for partition 1 is Standard 223s Data for partition 2 is Dna 223s There are a total of 2 default data divisions 223s Data matrix is interleaved 223s Gaps coded as - 223s Missing data coded as ? 223s Taxon 1 -> Orthoptera 223s Taxon 2 -> Paraneoptera 223s Taxon 3 -> Chrysopidae 223s Taxon 4 -> Raphidioptera 223s Taxon 5 -> Coleo_Polyphaga 223s Taxon 6 -> Coleo_Adephaga 223s Taxon 7 -> Lepid_Micropterigidae 223s Taxon 8 -> Lepid_Papilionidae 223s Taxon 9 -> Mecoptera 223s Taxon 10 -> Xyela 223s Taxon 11 -> Macroxyela 223s Taxon 12 -> Runaria 223s Taxon 13 -> Paremphytus 223s Taxon 14 -> Blasticotoma 223s Taxon 15 -> Tenthredo 223s Taxon 16 -> Aglaostigma 223s Taxon 17 -> Dolerus 223s Taxon 18 -> Selandria 223s Taxon 19 -> Strongylogaster 223s Taxon 20 -> Monophadnoides 223s Taxon 21 -> Metallus 223s Taxon 22 -> Athalia 223s Taxon 23 -> Taxonus 223s Taxon 24 -> Hoplocampa 223s Taxon 25 -> Nematinus 223s Taxon 26 -> Nematus 223s Taxon 27 -> Cladius 223s Taxon 28 -> Monoctenus 223s Taxon 29 -> Gilpinia 223s Taxon 30 -> Diprion 223s Taxon 31 -> Cimbicinae 223s Taxon 32 -> Abia 223s Taxon 33 -> Corynis 223s Taxon 34 -> Arge 223s Taxon 35 -> Sterictiphora 223s Taxon 36 -> Perga 223s Taxon 37 -> Phylacteophaga 223s Taxon 38 -> Lophyrotoma 223s Taxon 39 -> Acordulecera 223s Taxon 40 -> Decameria 223s Taxon 41 -> Neurotoma 223s Taxon 42 -> Onycholyda 223s Taxon 43 -> Pamphilius 223s Taxon 44 -> Cephalcia 223s Taxon 45 -> Acantholyda 223s Taxon 46 -> Megalodontesc 223s Taxon 47 -> Megalodontessk 223s Taxon 48 -> Cephus 223s Taxon 49 -> Calameuta 223s Taxon 50 -> Hartigia 223s Taxon 51 -> Syntexis 223s Taxon 52 -> Sirex 223s Taxon 53 -> Xeris 223s Taxon 54 -> Urocerus 223s Taxon 55 -> Tremex 223s Taxon 56 -> Xiphydria 223s Taxon 57 -> Orussus 223s Taxon 58 -> StephanidaeA 223s Taxon 59 -> StephanidaeB 223s Taxon 60 -> Megalyra 223s Taxon 61 -> Trigonalidae 223s Taxon 62 -> Chalcidoidea 223s Taxon 63 -> Evanioidea 223s Taxon 64 -> Ichneumonidae 223s Taxon 65 -> Cynipoidea 223s Taxon 66 -> ApoideaA 223s Taxon 67 -> ApoideaB 223s Taxon 68 -> ApoideaC 223s Taxon 69 -> Vespidae 223s Taxon 70 -> Triassoxyela 223s Taxon 71 -> Asioxyela 223s Taxon 72 -> Nigrimonticola 223s Taxon 73 -> Gigantoxyelinae 223s Taxon 74 -> Spathoxyela 223s Taxon 75 -> Xyela_mesozoica 223s Taxon 76 -> Angaridyela 223s Taxon 77 -> Xyelotoma 223s Taxon 78 -> Undatoma 223s Taxon 79 -> Dahuratoma 223s Taxon 80 -> Mesolyda 223s Taxon 81 -> Turgidontes 223s Taxon 82 -> Aulidontes 223s Taxon 83 -> Protosirex 223s Taxon 84 -> Aulisca 223s Taxon 85 -> Anaxyela 223s Taxon 86 -> Syntexyela 223s Taxon 87 -> Karatavites 223s Taxon 88 -> Stephanogaster 223s Taxon 89 -> Leptephialtites 223s Taxon 90 -> Cleistogaster 223s Taxon 91 -> Sepulca 223s Taxon 92 -> Onochoius 223s Taxon 93 -> Ghilarella 223s Taxon 94 -> Paroryssus 223s Taxon 95 -> Praeoryssus 223s Taxon 96 -> Mesorussus 223s Taxon 97 -> Trematothorax 223s Taxon 98 -> Thoracotrema 223s Taxon 99 -> Prosyntexis 223s Taxon 100 -> Kulbastavia 223s Taxon 101 -> Brachysyntexis 223s Taxon 102 -> Symphytopterus 223s Taxon 103 -> Eoxyela 223s Taxon 104 -> Liadoxyela 223s Taxon 105 -> Abrotoxyela 223s Taxon 106 -> Pseudoxyelocerus 223s Taxon 107 -> Palaeathalia 223s Taxon 108 -> Ferganolyda 223s Taxon 109 -> PamphiliidaeUndesc 223s Taxon 110 -> Rudisiricius 223s Taxon 111 -> Sogutia 223s Taxon 112 -> Xyelula 223s Taxon 113 -> Brigittepterus 223s Taxon 114 -> Grimmaratavites 223s Successfully read matrix 223s Matrix contains polymorphisms, interpreted as ambiguity 223s Setting default partition, dividing characters into 2 parts 223s Setting model defaults 223s Seed (for generating default start values) = 1711053810 223s WARNING: There are 2 characters incompatible with the specified 223s coding bias. These characters will be excluded. 223s Setting output file names to "hymfossil.nex.run." 223s Exiting data block 223s Reading mrbayes block 223s Defining charset called 'MV' 223s Defining charset called 'MS' 223s Defining charset called '12S' 223s Defining charset called '16S' 223s Defining charset called '18S' 223s Defining charset called '28S' 223s Defining charset called 'CO1' 223s Defining charset called 'CO1_12' 223s Defining charset called 'CO1_3' 223s Defining charset called 'Ef1aF2' 223s Defining charset called 'Ef1aF2_12' 223s Defining charset called 'Ef1aF2_3' 223s Defining charset called 'Ef1aF1' 223s Defining charset called 'Ef1aF1_12' 223s Defining charset called 'Ef1aF1_3' 223s Defining charset called 'Ef1a' 223s Defining charset called 'morph_ordered' 223s Defining charset called 'morph_excluded' 223s Defining charset called 'morph_constant' 223s Setting characters to ordered 223s Ctype was applied to 44 standard characters 223s Excluding character(s) 223s WARNING: There are 2 characters incompatible with the specified 223s coding bias. These characters will be excluded. 223s Excluding character(s) 223s Setting outgroup to taxon "Orthoptera" 223s Defining taxset called 'fossils' 223s Defining taxset called 'nomorphodata' 223s Defining taxset called 'nomolecudata' 223s Defining constraint called 'root' 223s Defining constraint called 'Hymenoptera' 223s Defining constraint called 'Holometabola' 223s Defining constraint called 'HolometabolaWithFossils' 223s Defining constraint called 'Pamphilioidea' 223s Defining constraint called 'Siricoidea' 223s Defining constraint called 'Apocrita' 223s Defining constraint called 'Xyelidae' 223s Defining constraint called 'Tenthredinidae' 223s Defining constraint called 'Vespina' 223s Defining partition called 'without_CO1_3' 223s Excluding character(s) 223s Setting without_CO1_3 as the partition, dividing characters into 7 parts. 223s Setting model defaults 223s Seed (for generating default start values) = 1399008280 223s Enabling Coding Variable for partition 1 223s Setting Rates to Gamma for partition 1 223s Successfully set likelihood model parameters to 223s partition 1 (if applicable) 223s Setting Nucmodel to 4by4 for partition 2 223s Setting Nucmodel to 4by4 for partition 3 223s Setting Nucmodel to 4by4 for partition 5 223s Setting Nucmodel to 4by4 for partition 6 223s Setting Nucmodel to 4by4 for partition 7 223s Set state frequency prior to default 223s Setting Nst to 6 for partition 2 223s Setting Nst to 6 for partition 3 223s Setting Nst to 6 for partition 5 223s Setting Nst to 6 for partition 6 223s Setting Nst to 6 for partition 7 223s Setting Rates to Gamma for partition 2 223s Setting Rates to Gamma for partition 3 223s Setting Rates to Gamma for partition 5 223s Setting Rates to Gamma for partition 6 223s Setting Rates to Gamma for partition 7 223s Setting Covarion to No for partition 2 223s Setting Covarion to No for partition 3 223s Setting Covarion to No for partition 5 223s Setting Covarion to No for partition 6 223s Setting Covarion to No for partition 7 223s Successfully set likelihood model parameters to 223s partitions 2, 3, 5, 6, and 7 (if applicable) 223s Setting Nucmodel to 4by4 for partition 4 223s Set state frequency prior to default 223s Setting Nst to 6 for partition 4 223s Setting Rates to Gamma for partition 4 223s Setting Covarion to No for partition 4 223s Successfully set likelihood model parameters to 223s partition 4 (if applicable) 223s Setting Statefreqpr to Fixed(Equal) for partition 4 223s Successfully set prior model parameters to 223s partition 4 (if applicable) 223s Unlinking 223s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 1 223s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 2 223s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 3 223s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 4 223s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 5 223s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 6 223s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 7 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting age of taxon 'Triassoxyela' to Uniform(228.00,242.00) 223s Setting age of taxon 'Asioxyela' to Uniform(228.00,242.00) 223s Setting age of taxon 'Nigrimonticola' to Uniform(152.00,163.00) 223s Setting age of taxon 'Gigantoxyelinae' to Uniform(125.00,145.00) 223s Setting age of taxon 'Spathoxyela' to Uniform(125.00,145.00) 223s Setting age of taxon 'Xyela_mesozoica' to Uniform(125.00,145.00) 223s Setting age of taxon 'Angaridyela' to Uniform(125.00,145.00) 223s Setting age of taxon 'Xyelotoma' to Uniform(152.00,163.00) 223s Setting age of taxon 'Undatoma' to Uniform(145.00,152.00) 223s Setting age of taxon 'Dahuratoma' to Uniform(133.00,135.00) 223s Setting age of taxon 'Mesolyda' to Uniform(152.00,163.00) 223s Setting age of taxon 'Turgidontes' to Uniform(133.00,135.00) 223s Setting age of taxon 'Aulidontes' to Uniform(152.00,163.00) 223s Setting age of taxon 'Protosirex' to Uniform(152.00,163.00) 223s Setting age of taxon 'Aulisca' to Uniform(152.00,163.00) 223s Setting age of taxon 'Anaxyela' to Uniform(152.00,163.00) 223s Setting age of taxon 'Syntexyela' to Uniform(152.00,163.00) 223s Setting age of taxon 'Karatavites' to Uniform(152.00,163.00) 223s Setting age of taxon 'Stephanogaster' to Uniform(152.00,163.00) 223s Setting age of taxon 'Leptephialtites' to Uniform(152.00,163.00) 223s Setting age of taxon 'Cleistogaster' to Uniform(168.00,191.00) 223s Setting age of taxon 'Sepulca' to Uniform(152.00,163.00) 223s Setting age of taxon 'Onochoius' to Uniform(125.00,145.00) 223s Setting age of taxon 'Ghilarella' to Uniform(113.00,125.00) 223s Setting age of taxon 'Paroryssus' to Uniform(152.00,163.00) 223s Setting age of taxon 'Praeoryssus' to Uniform(152.00,163.00) 223s Setting age of taxon 'Mesorussus' to Uniform(94.00,100.00) 223s Setting age of taxon 'Trematothorax' to Uniform(125.00,145.00) 223s Setting age of taxon 'Thoracotrema' to Uniform(113.00,125.00) 223s Setting age of taxon 'Prosyntexis' to Uniform(80.00,86.00) 223s Setting age of taxon 'Kulbastavia' to Uniform(152.00,163.00) 223s Setting age of taxon 'Brachysyntexis' to Uniform(152.00,163.00) 223s Setting age of taxon 'Symphytopterus' to Uniform(152.00,163.00) 223s Setting age of taxon 'Eoxyela' to Uniform(168.00,191.00) 223s Setting age of taxon 'Liadoxyela' to Uniform(168.00,191.00) 223s Setting age of taxon 'Abrotoxyela' to Uniform(161.00,168.00) 223s Setting age of taxon 'Pseudoxyelocerus' to Uniform(182.00,183.00) 223s Setting age of taxon 'Palaeathalia' to Uniform(125.00,145.00) 223s Setting age of taxon 'Ferganolyda' to Uniform(168.00,191.00) 223s Setting age of taxon 'PamphiliidaeUndesc' to Uniform(161.00,168.00) 223s Setting age of taxon 'Rudisiricius' to Uniform(161.00,168.00) 223s Setting age of taxon 'Sogutia' to Uniform(174.00,201.00) 223s Setting age of taxon 'Xyelula' to Uniform(182.00,183.00) 223s Setting age of taxon 'Brigittepterus' to Uniform(182.00,183.00) 223s Setting age of taxon 'Grimmaratavites' to Uniform(182.00,183.00) 223s Excluding taxa 223s Setting Brlenspr to Clock:Fossilization for partition 1 223s Setting Brlenspr to Clock:Fossilization for partition 2 223s Setting Brlenspr to Clock:Fossilization for partition 3 223s Setting Brlenspr to Clock:Fossilization for partition 4 223s Setting Brlenspr to Clock:Fossilization for partition 5 223s Setting Brlenspr to Clock:Fossilization for partition 6 223s Setting Brlenspr to Clock:Fossilization for partition 7 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting Speciationpr to Exponential(20.00) for partition 1 223s Setting Speciationpr to Exponential(20.00) for partition 2 223s Setting Speciationpr to Exponential(20.00) for partition 3 223s Setting Speciationpr to Exponential(20.00) for partition 4 223s Setting Speciationpr to Exponential(20.00) for partition 5 223s Setting Speciationpr to Exponential(20.00) for partition 6 223s Setting Speciationpr to Exponential(20.00) for partition 7 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting Extinctionpr to Beta(1.00,1.00) for partition 1 223s Setting Extinctionpr to Beta(1.00,1.00) for partition 2 223s Setting Extinctionpr to Beta(1.00,1.00) for partition 3 223s Setting Extinctionpr to Beta(1.00,1.00) for partition 4 223s Setting Extinctionpr to Beta(1.00,1.00) for partition 5 223s Setting Extinctionpr to Beta(1.00,1.00) for partition 6 223s Setting Extinctionpr to Beta(1.00,1.00) for partition 7 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting Fossilizationpr to Beta(1.00,1.00) for partition 1 223s Setting Fossilizationpr to Beta(1.00,1.00) for partition 2 223s Setting Fossilizationpr to Beta(1.00,1.00) for partition 3 223s Setting Fossilizationpr to Beta(1.00,1.00) for partition 4 223s Setting Fossilizationpr to Beta(1.00,1.00) for partition 5 223s Setting Fossilizationpr to Beta(1.00,1.00) for partition 6 223s Setting Fossilizationpr to Beta(1.00,1.00) for partition 7 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting Sampleprob to 0.00050000 for partition 1 223s Setting Sampleprob to 0.00050000 for partition 2 223s Setting Sampleprob to 0.00050000 for partition 3 223s Setting Sampleprob to 0.00050000 for partition 4 223s Setting Sampleprob to 0.00050000 for partition 5 223s Setting Sampleprob to 0.00050000 for partition 6 223s Setting Sampleprob to 0.00050000 for partition 7 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting SampleStrat to Diversity for partition 1 223s Setting SampleStrat to Diversity for partition 2 223s Setting SampleStrat to Diversity for partition 3 223s Setting SampleStrat to Diversity for partition 4 223s Setting SampleStrat to Diversity for partition 5 223s Setting SampleStrat to Diversity for partition 6 223s Setting SampleStrat to Diversity for partition 7 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting Topologypr to Constraints for partition 1 223s Setting Topologypr to Constraints for partition 2 223s Setting Topologypr to Constraints for partition 3 223s Setting Topologypr to Constraints for partition 4 223s Setting Topologypr to Constraints for partition 5 223s Setting Topologypr to Constraints for partition 6 223s Setting Topologypr to Constraints for partition 7 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting age of constraint node 'root' to Offsetexponential(315.00,396.00) 223s Setting age of constraint node 'HolometabolaWithFossils' to Offsetexponential(302.00,396.00) 223s Setting Nodeagepr to Calibrated for partition 1 223s Setting Nodeagepr to Calibrated for partition 2 223s Setting Nodeagepr to Calibrated for partition 3 223s Setting Nodeagepr to Calibrated for partition 4 223s Setting Nodeagepr to Calibrated for partition 5 223s Setting Nodeagepr to Calibrated for partition 6 223s Setting Nodeagepr to Calibrated for partition 7 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting Clockvarpr to Igr for partition 1 223s Setting Clockvarpr to Igr for partition 2 223s Setting Clockvarpr to Igr for partition 3 223s Setting Clockvarpr to Igr for partition 4 223s Setting Clockvarpr to Igr for partition 5 223s Setting Clockvarpr to Igr for partition 6 223s Setting Clockvarpr to Igr for partition 7 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting Igrvarpr to Exponential(37.00) for partition 1 223s Setting Igrvarpr to Exponential(37.00) for partition 2 223s Setting Igrvarpr to Exponential(37.00) for partition 3 223s Setting Igrvarpr to Exponential(37.00) for partition 4 223s Setting Igrvarpr to Exponential(37.00) for partition 5 223s Setting Igrvarpr to Exponential(37.00) for partition 6 223s Setting Igrvarpr to Exponential(37.00) for partition 7 223s Successfully set prior model parameters to all 223s applicable data partitions 223s Setting Clockratepr to Lognormal(-7.10,0.50) 223s Setting Clockratepr to Lognormal(-7.10,0.50) 223s Setting Clockratepr to Lognormal(-7.10,0.50) 223s Setting Clockratepr to Lognormal(-7.10,0.50) 223s Setting Clockratepr to Lognormal(-7.10,0.50) 223s Setting Clockratepr to Lognormal(-7.10,0.50) 223s Setting Clockratepr to Lognormal(-7.10,0.50) 223s Successfully set prior model parameters to all 223s applicable data partitions 223s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 223s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 223s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 223s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 223s Setting number of runs to 4 223s Setting heating parameter to 0.070000 223s Setting number of generations to 100000000 223s Setting sample frequency to 1000 223s Setting print frequency to 10000 223s Setting diagnosing frequency to 50000 223s Setting chain output file names to "hymfossil.nex.run.

" 223s Successfully set chain parameters 223s Exiting mrbayes block 223s Reached end of file 223s 223s Tasks completed, exiting program because mode is noninteractive 223s To return control to the command line after completion of file processing, 223s set mode to interactive with 'mb -i ' (i is for interactive) 223s or use 'set mode=interactive' 223s 224s 224s 224s MrBayes 3.2.7a s390x 224s 224s (Bayesian Analysis of Phylogeny) 224s 224s Distributed under the GNU General Public License 224s 224s 224s Type "help" or "help " for information 224s on the commands that are available. 224s 224s Type "about" for authorship and general 224s information about the program. 224s 224s 224s 224s Executing file "avian_ovomucoids.nex" 224s DOS line termination 224s Longest line length = 129 224s Parsing file 224s Expecting NEXUS formatted file 224s Reading data block 224s Allocated taxon set 224s Allocated matrix 224s Defining new matrix with 89 taxa and 88 characters 224s Data is Protein 224s Missing data coded as ? 224s Gaps coded as - 224s Matching characters coded as . 224s Taxon 1 -> Struthio_camelus 224s Taxon 2 -> Rhea_americana 224s Taxon 3 -> Pterocnemia_pennata 224s Taxon 4 -> Casuarius_casuarius 224s Taxon 5 -> Dromaius_novaehollandiae 224s Taxon 6 -> Nothoprocta_cinerascens 224s Taxon 7 -> Eudromia_elegans 224s Taxon 8 -> Pygoscelis_adeliae_f 224s Taxon 9 -> Pygoscelis_adeliae_y 224s Taxon 10 -> Spheniscus_humboldti 224s Taxon 11 -> Phalacrocorax_sulcirostris 224s Taxon 12 -> Anhinga_novaehollandeae 224s Taxon 13 -> Nycticorax_nycticorax 224s Taxon 14 -> Chauna_chavaria 224s Taxon 15 -> Anseranas_semipalmata 224s Taxon 16 -> Dendrocygna_arcuata 224s Taxon 17 -> Dendrocygna_autumnalis 224s Taxon 18 -> Dendrocygna_eytoni_d 224s Taxon 19 -> Dendrocygna_eytoni_e 224s Taxon 20 -> Dendrocygna_viduata 224s Taxon 21 -> Coscoroba_coscoroba 224s Taxon 22 -> Cygnus_atratus 224s Taxon 23 -> Goose 224s Taxon 24 -> Anser_indicus 224s Taxon 25 -> Branta_canadensis 224s Taxon 26 -> Cereopsis_novaehollandiae 224s Taxon 27 -> Chloephaga_picta 224s Taxon 28 -> Duck 224s Taxon 29 -> Anas_platyrhynchos 224s Taxon 30 -> Megapodius_freycinet 224s Taxon 31 -> Leipoa_ocellata 224s Taxon 32 -> Ortalis_vetula 224s Taxon 33 -> Penelope_jacquacu 224s Taxon 34 -> Penelope_superciliaris 224s Taxon 35 -> Bonasa_umbellus 224s Taxon 36 -> Tympanuchus_cupido 224s Taxon 37 -> Oreortyx_pictus 224s Taxon 38 -> Callipepla_squamata_n 224s Taxon 39 -> Callipepla_squamata_s 224s Taxon 40 -> Lophortyx_californicus 224s Taxon 41 -> Colinus_virginianus 224s Taxon 42 -> Cyrtonyx_montezumae_l 224s Taxon 43 -> Cyrtonyx_montezumae_s 224s Taxon 44 -> Alectoris_chukar 224s Taxon 45 -> Alectoris_rufa 224s Taxon 46 -> Francolinus_afer 224s Taxon 47 -> Francolinus_erckelii 224s Taxon 48 -> Francolinus_coqui_v 224s Taxon 49 -> Francolinus_coqui_a 224s Taxon 50 -> Francolinus_francolinus_a 224s Taxon 51 -> Francolinus_francolinus_v 224s Taxon 52 -> Francolinus_pondicerianus 224s Taxon 53 -> Perdix_perdix 224s Taxon 54 -> Coturnix_delegorguei 224s Taxon 55 -> Coturnix_coturnix_japonica_1 224s Taxon 56 -> Coturnix_coturnix_japonica_2 224s Taxon 57 -> Arborophilia_torqueola 224s Taxon 58 -> Bambusicola_thoracica 224s Taxon 59 -> Tragopan_satyra 224s Taxon 60 -> Tragopan_temmincki 224s Taxon 61 -> Lophophorus_impejanus 224s Taxon 62 -> Crossoptilon_auritum 224s Taxon 63 -> Lophura_edwardsi 224s Taxon 64 -> Lophura_ignita 224s Taxon 65 -> Gallus_gallus 224s Taxon 66 -> Grey_jungle_fowl 224s Taxon 67 -> Phasianus_colchicus 224s Taxon 68 -> Syrmaticus_ellioti 224s Taxon 69 -> Syrmaticus_reevesii 224s Taxon 70 -> Chrysolophus_amherstiae 224s Taxon 71 -> Polyplectron_bicalcaratum 224s Taxon 72 -> Argusianus_argus_argus 224s Taxon 73 -> Pavo_cristatus 224s Taxon 74 -> Afropavo_congensis 224s Taxon 75 -> Numida_meleagris 224s Taxon 76 -> Acryllium_vulturinum 224s Taxon 77 -> Meleagris_gallopavo 224s Taxon 78 -> Grus_carunculatus 224s Taxon 79 -> Anthropoides_virgo 224s Taxon 80 -> Grus_vipio 224s Taxon 81 -> Fulica_atra 224s Taxon 82 -> Vanellus_spinosus 224s Taxon 83 -> Larus_rudibundus 224s Taxon 84 -> Turnix_sylvatica 224s Taxon 85 -> Gallirallus_australis 224s Taxon 86 -> Geococcyx_californianus 224s Taxon 87 -> Dacelo_novaeguineae 224s Taxon 88 -> Carpococcyx_renauldi 224s Taxon 89 -> Podargus_strigoides 224s Successfully read matrix 224s Setting default partition (does not divide up characters) 224s Setting model defaults 224s Seed (for generating default start values) = 1711053810 224s Setting output file names to "avian_ovomucoids.nex.run." 224s Exiting data block 224s Reached end of file 224s 224s Tasks completed, exiting program because mode is noninteractive 224s To return control to the command line after completion of file processing, 224s set mode to interactive with 'mb -i ' (i is for interactive) 224s or use 'set mode=interactive' 224s 224s 224s 224s MrBayes 3.2.7a s390x 224s 224s (Bayesian Analysis of Phylogeny) 224s 224s Distributed under the GNU General Public License 224s 224s 224s Type "help" or "help " for information 224s on the commands that are available. 224s 224s Type "about" for authorship and general 224s information about the program. 224s 224s 224s 224s Executing file "codon.nex" 224s DOS line termination 224s Longest line length = 88 224s Parsing file 224s Expecting NEXUS formatted file 224s Reading mrbayes block 224s Setting autoclose to yes 224s Setting nowarnings to yes 224s 224s Executing file "replicase.nex"... 224s 224s DOS line termination 224s Longest line length = 970 224s Parsing file 224s Expecting NEXUS formatted file 224s Reading data block 224s Allocated taxon set 224s Allocated matrix 224s Defining new matrix with 9 taxa and 720 characters 224s Data is Rna 224s Data matrix is not interleaved 224s Gaps coded as - 224s Missing data coded as ? 224s Taxon 1 -> FR 224s Taxon 2 -> MS2 224s Taxon 3 -> GA 224s Taxon 4 -> SP 224s Taxon 5 -> NL95 224s Taxon 6 -> M11 224s Taxon 7 -> MX1 224s Taxon 8 -> QB 224s Taxon 9 -> PP7 224s Successfully read matrix 224s Setting default partition (does not divide up characters) 224s Setting model defaults 224s Seed (for generating default start values) = 1711053811 224s Setting output file names to "replicase.nex.run." 224s Exiting data block 224s Reached end of file 224s 224s Returning execution to calling file ... 224s 224s Setting Nucmodel to Codon 224s Set state frequency prior to default 224s Successfully set likelihood model parameters 224s Setting Nucmodel to Codon 224s Set state frequency prior to default 224s Setting Omegavar to Ny98 224s Successfully set likelihood model parameters 224s Reporting positive selection (if applicable) 224s Reporting site omega values (if applicable) 224s Setting Nucmodel to Codon 224s Set state frequency prior to default 224s Setting Omegavar to M3 224s Successfully set likelihood model parameters 224s Reporting positive selection (if applicable) 224s Setting print frequency to 10 224s Successfully set chain parameters 224s Exiting mrbayes block 224s Reached end of file 224s 224s Tasks completed, exiting program because mode is noninteractive 224s To return control to the command line after completion of file processing, 224s set mode to interactive with 'mb -i ' (i is for interactive) 224s or use 'set mode=interactive' 224s 224s 224s 224s MrBayes 3.2.7a s390x 224s 224s (Bayesian Analysis of Phylogeny) 224s 224s Distributed under the GNU General Public License 224s 224s 224s Type "help" or "help " for information 224s on the commands that are available. 224s 224s Type "about" for authorship and general 224s information about the program. 224s 224s 224s 224s Executing file "cynmix.nex" 224s DOS line termination 224s Longest line length = 217 224s Parsing file 224s Expecting NEXUS formatted file 224s Reading data block 224s Allocated taxon set 224s Allocated matrix 224s Defining new matrix with 32 taxa and 3246 characters 224s Data is Mixed 224s Data for partition 1 is Standard 224s Data for partition 2 is Dna 224s There are a total of 2 default data divisions 224s Data matrix is interleaved 224s Gaps coded as - 224s Missing data coded as ? 224s Taxon 1 -> Ibalia 224s Taxon 2 -> Synergus 224s Taxon 3 -> Periclistus 224s Taxon 4 -> Ceroptres 224s Taxon 5 -> Synophromorpha 224s Taxon 6 -> Xestophanes 224s Taxon 7 -> Diastrophus 224s Taxon 8 -> Gonaspis 224s Taxon 9 -> Liposthenes_gle 224s Taxon 10 -> Liposthenes_ker 224s Taxon 11 -> Antistrophus 224s Taxon 12 -> Rhodus 224s Taxon 13 -> Hedickiana 224s Taxon 14 -> Neaylax 224s Taxon 15 -> Isocolus 224s Taxon 16 -> Aulacidea 224s Taxon 17 -> Panteliella 224s Taxon 18 -> Barbotinia 224s Taxon 19 -> Aylax 224s Taxon 20 -> Iraella 224s Taxon 21 -> Timaspis 224s Taxon 22 -> Phanacis_1 224s Taxon 23 -> Phanacis_2 224s Taxon 24 -> Eschatocerus 224s Taxon 25 -> Diplolepis 224s Taxon 26 -> Pediaspis 224s Taxon 27 -> Plagiotrochus 224s Taxon 28 -> Andricus 224s Taxon 29 -> Neuroterus 224s Taxon 30 -> Biorhiza 224s Taxon 31 -> Parnips 224s Taxon 32 -> Paramblynotus 224s Successfully read matrix 224s Matrix contains polymorphisms, interpreted as ambiguity 224s Setting default partition, dividing characters into 2 parts 224s Setting model defaults 224s Seed (for generating default start values) = 1711053811 224s Setting output file names to "cynmix.nex.run." 224s Exiting data block 224s Reading mrbayes block 224s Defining charset called 'morphology' 224s Defining charset called 'COI' 224s Defining charset called 'EF1a' 224s Defining charset called 'LWRh' 224s Defining charset called '28S' 224s Defining partition called 'favored' 224s Exiting mrbayes block 224s Reached end of file 224s 224s Tasks completed, exiting program because mode is noninteractive 224s To return control to the command line after completion of file processing, 224s set mode to interactive with 'mb -i ' (i is for interactive) 224s or use 'set mode=interactive' 224s 224s 224s 224s MrBayes 3.2.7a s390x 224s 224s (Bayesian Analysis of Phylogeny) 224s 224s Distributed under the GNU General Public License 224s 224s 224s Type "help" or "help " for information 224s on the commands that are available. 224s 224s Type "about" for authorship and general 224s information about the program. 224s 224s 224s 224s Executing file "finch.nex" 224s DOS line termination 224s Longest line length = 665 224s Parsing file 224s Expecting NEXUS formatted file 224s Reading data block 224s Allocated taxon set 224s Allocated matrix 224s Defining new matrix with 4 taxa and 16119 characters 224s Data is Dna 224s Gaps coded as - 224s Missing data coded as ? 224s Matching characters coded as . 224s Taxon 1 -> Q097 224s Taxon 2 -> W097 224s Taxon 3 -> B097 224s Taxon 4 -> O097 224s Successfully read matrix 224s Setting default partition (does not divide up characters) 224s Setting model defaults 224s Seed (for generating default start values) = 1711053811 224s Setting output file names to "finch.nex.run." 224s Exiting data block 224s Reading mrbayes block 224s Setting autoclose to yes 224s Setting nowarnings to yes 224s Setting outgroup to taxon "O097" 224s Defining charset called 'locus097' 224s Defining charset called 'locus098' 224s Defining charset called 'locus118' 224s Defining charset called 'locus119' 224s Defining charset called 'locus120' 224s Defining charset called 'locus122' 224s Defining charset called 'locus130' 224s Defining charset called 'locus104' 224s Defining charset called 'locus129' 224s Defining charset called 'locus143' 224s Defining charset called 'locus146' 224s Defining charset called 'locus111' 224s Defining charset called 'locus135' 224s Defining charset called 'locus148' 224s Defining charset called 'locus182' 224s Defining charset called 'locus200' 224s Defining charset called 'locus209' 224s Defining charset called 'locusB098' 224s Defining charset called 'locus184' 224s Defining charset called 'locus185' 224s Defining charset called 'locus186' 224s Defining charset called 'locus187' 224s Defining charset called 'locus188' 224s Defining charset called 'locus192' 224s Defining charset called 'locus193' 224s Defining charset called 'locus195' 224s Defining charset called 'locus198' 224s Defining charset called 'locus199' 224s Defining charset called 'locusB200' 224s Defining charset called 'locus103' 224s Defining partition called 'genes' 224s Setting genes as the partition, dividing characters into 30 parts. 224s Setting model defaults 224s Seed (for generating default start values) = 2042199238 224s Defining speciespartition called 'test' 224s Setting test as the speciespartition, dividing taxa into 4 species. 224s Setting model defaults 224s Seed (for generating default start values) = 1059926435 224s Unlinking 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 1 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 2 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 3 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 4 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 5 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 6 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 7 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 8 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 9 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 10 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 11 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 12 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 13 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 14 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 15 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 16 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 17 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 18 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 19 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 20 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 21 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 22 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 23 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 24 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 25 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 26 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 27 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 28 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 29 224s Setting Brlenspr to Clock:Speciestreecoalescence for partition 30 224s Successfully set prior model parameters to all 224s applicable data partitions 224s Setting Topologypr to Speciestree for partition 1 224s Setting Topologypr to Speciestree for partition 2 224s Setting Topologypr to Speciestree for partition 3 224s Setting Topologypr to Speciestree for partition 4 224s Setting Topologypr to Speciestree for partition 5 224s Setting Topologypr to Speciestree for partition 6 224s Setting Topologypr to Speciestree for partition 7 224s Setting Topologypr to Speciestree for partition 8 224s Setting Topologypr to Speciestree for partition 9 224s Setting Topologypr to Speciestree for partition 10 224s Setting Topologypr to Speciestree for partition 11 224s Setting Topologypr to Speciestree for partition 12 224s Setting Topologypr to Speciestree for partition 13 224s Setting Topologypr to Speciestree for partition 14 224s Setting Topologypr to Speciestree for partition 15 224s Setting Topologypr to Speciestree for partition 16 224s Setting Topologypr to Speciestree for partition 17 224s Setting Topologypr to Speciestree for partition 18 224s Setting Topologypr to Speciestree for partition 19 224s Setting Topologypr to Speciestree for partition 20 224s Setting Topologypr to Speciestree for partition 21 224s Setting Topologypr to Speciestree for partition 22 224s Setting Topologypr to Speciestree for partition 23 224s Setting Topologypr to Speciestree for partition 24 224s Setting Topologypr to Speciestree for partition 25 224s Setting Topologypr to Speciestree for partition 26 224s Setting Topologypr to Speciestree for partition 27 224s Setting Topologypr to Speciestree for partition 28 224s Setting Topologypr to Speciestree for partition 29 224s Setting Topologypr to Speciestree for partition 30 224s Successfully set prior model parameters to all 224s applicable data partitions 224s Setting Popvarpr to Variable for partition 1 224s Setting Popvarpr to Variable for partition 2 224s Setting Popvarpr to Variable for partition 3 224s Setting Popvarpr to Variable for partition 4 224s Setting Popvarpr to Variable for partition 5 224s Setting Popvarpr to Variable for partition 6 224s Setting Popvarpr to Variable for partition 7 224s Setting Popvarpr to Variable for partition 8 224s Setting Popvarpr to Variable for partition 9 224s Setting Popvarpr to Variable for partition 10 224s Setting Popvarpr to Variable for partition 11 224s Setting Popvarpr to Variable for partition 12 224s Setting Popvarpr to Variable for partition 13 224s Setting Popvarpr to Variable for partition 14 224s Setting Popvarpr to Variable for partition 15 224s Setting Popvarpr to Variable for partition 16 224s Setting Popvarpr to Variable for partition 17 224s Setting Popvarpr to Variable for partition 18 224s Setting Popvarpr to Variable for partition 19 224s Setting Popvarpr to Variable for partition 20 224s Setting Popvarpr to Variable for partition 21 224s Setting Popvarpr to Variable for partition 22 224s Setting Popvarpr to Variable for partition 23 224s Setting Popvarpr to Variable for partition 24 224s Setting Popvarpr to Variable for partition 25 224s Setting Popvarpr to Variable for partition 26 224s Setting Popvarpr to Variable for partition 27 224s Setting Popvarpr to Variable for partition 28 224s Setting Popvarpr to Variable for partition 29 224s Setting Popvarpr to Variable for partition 30 224s Successfully set prior model parameters to all 224s applicable data partitions 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 1 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 2 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 3 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 4 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 5 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 6 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 7 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 8 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 9 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 10 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 11 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 12 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 13 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 14 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 15 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 16 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 17 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 18 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 19 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 20 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 21 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 22 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 23 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 24 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 25 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 26 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 27 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 28 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 29 224s Setting Popsizepr to Gamma(1.00,100.00) for partition 30 224s Successfully set prior model parameters to all 224s applicable data partitions 224s Exiting mrbayes block 224s Reached end of file 224s 224s Tasks completed, exiting program because mode is noninteractive 224s To return control to the command line after completion of file processing, 224s set mode to interactive with 'mb -i ' (i is for interactive) 224s or use 'set mode=interactive' 224s 224s 224s 224s MrBayes 3.2.7a s390x 224s 224s (Bayesian Analysis of Phylogeny) 224s 224s Distributed under the GNU General Public License 224s 224s 224s Type "help" or "help " for information 224s on the commands that are available. 224s 224s Type "about" for authorship and general 224s information about the program. 224s 224s 224s 224s Executing file "hymfossil.nex" 224s UNIX line termination 224s Longest line length = 1117 224s Parsing file 224s Expecting NEXUS formatted file 224s Reading data block 224s Allocated taxon set 224s Allocated matrix 224s Defining new matrix with 114 taxa and 5449 characters 224s Data is Mixed 224s Data for partition 1 is Standard 224s Data for partition 2 is Dna 224s There are a total of 2 default data divisions 224s Data matrix is interleaved 224s Gaps coded as - 224s Missing data coded as ? 224s Taxon 1 -> Orthoptera 224s Taxon 2 -> Paraneoptera 224s Taxon 3 -> Chrysopidae 224s Taxon 4 -> Raphidioptera 224s Taxon 5 -> Coleo_Polyphaga 224s Taxon 6 -> Coleo_Adephaga 224s Taxon 7 -> Lepid_Micropterigidae 224s Taxon 8 -> Lepid_Papilionidae 224s Taxon 9 -> Mecoptera 224s Taxon 10 -> Xyela 224s Taxon 11 -> Macroxyela 224s Taxon 12 -> Runaria 224s Taxon 13 -> Paremphytus 224s Taxon 14 -> Blasticotoma 224s Taxon 15 -> Tenthredo 224s Taxon 16 -> Aglaostigma 224s Taxon 17 -> Dolerus 224s Taxon 18 -> Selandria 224s Taxon 19 -> Strongylogaster 224s Taxon 20 -> Monophadnoides 224s Taxon 21 -> Metallus 224s Taxon 22 -> Athalia 224s Taxon 23 -> Taxonus 224s Taxon 24 -> Hoplocampa 224s Taxon 25 -> Nematinus 224s Taxon 26 -> Nematus 224s Taxon 27 -> Cladius 224s Taxon 28 -> Monoctenus 224s Taxon 29 -> Gilpinia 224s Taxon 30 -> Diprion 224s Taxon 31 -> Cimbicinae 224s Taxon 32 -> Abia 224s Taxon 33 -> Corynis 224s Taxon 34 -> Arge 224s Taxon 35 -> Sterictiphora 224s Taxon 36 -> Perga 224s Taxon 37 -> Phylacteophaga 224s Taxon 38 -> Lophyrotoma 224s Taxon 39 -> Acordulecera 224s Taxon 40 -> Decameria 224s Taxon 41 -> Neurotoma 224s Taxon 42 -> Onycholyda 224s Taxon 43 -> Pamphilius 224s Taxon 44 -> Cephalcia 224s Taxon 45 -> Acantholyda 224s Taxon 46 -> Megalodontesc 224s Taxon 47 -> Megalodontessk 224s Taxon 48 -> Cephus 224s Taxon 49 -> Calameuta 224s Taxon 50 -> Hartigia 224s Taxon 51 -> Syntexis 224s Taxon 52 -> Sirex 224s Taxon 53 -> Xeris 224s Taxon 54 -> Urocerus 224s Taxon 55 -> Tremex 224s Taxon 56 -> Xiphydria 224s Taxon 57 -> Orussus 224s Taxon 58 -> StephanidaeA 224s Taxon 59 -> StephanidaeB 224s Taxon 60 -> Megalyra 224s Taxon 61 -> Trigonalidae 224s Taxon 62 -> Chalcidoidea 224s Taxon 63 -> Evanioidea 224s Taxon 64 -> Ichneumonidae 224s Taxon 65 -> Cynipoidea 224s Taxon 66 -> ApoideaA 224s Taxon 67 -> ApoideaB 224s Taxon 68 -> ApoideaC 224s Taxon 69 -> Vespidae 224s Taxon 70 -> Triassoxyela 224s Taxon 71 -> Asioxyela 224s Taxon 72 -> Nigrimonticola 224s Taxon 73 -> Gigantoxyelinae 224s Taxon 74 -> Spathoxyela 224s Taxon 75 -> Xyela_mesozoica 224s Taxon 76 -> Angaridyela 224s Taxon 77 -> Xyelotoma 224s Taxon 78 -> Undatoma 224s Taxon 79 -> Dahuratoma 224s Taxon 80 -> Mesolyda 224s Taxon 81 -> Turgidontes 224s Taxon 82 -> Aulidontes 224s Taxon 83 -> Protosirex 224s Taxon 84 -> Aulisca 224s Taxon 85 -> Anaxyela 224s Taxon 86 -> Syntexyela 224s Taxon 87 -> Karatavites 224s Taxon 88 -> Stephanogaster 224s Taxon 89 -> Leptephialtites 224s Taxon 90 -> Cleistogaster 224s Taxon 91 -> Sepulca 224s Taxon 92 -> Onochoius 224s Taxon 93 -> Ghilarella 224s Taxon 94 -> Paroryssus 224s Taxon 95 -> Praeoryssus 224s Taxon 96 -> Mesorussus 224s Taxon 97 -> Trematothorax 224s Taxon 98 -> Thoracotrema 224s Taxon 99 -> Prosyntexis 224s Taxon 100 -> Kulbastavia 224s Taxon 101 -> Brachysyntexis 224s Taxon 102 -> Symphytopterus 224s Taxon 103 -> Eoxyela 224s Taxon 104 -> Liadoxyela 224s Taxon 105 -> Abrotoxyela 224s Taxon 106 -> Pseudoxyelocerus 224s Taxon 107 -> Palaeathalia 224s Taxon 108 -> Ferganolyda 224s Taxon 109 -> PamphiliidaeUndesc 224s Taxon 110 -> Rudisiricius 224s Taxon 111 -> Sogutia 224s Taxon 112 -> Xyelula 224s Taxon 113 -> Brigittepterus 224s Taxon 114 -> Grimmaratavites 224s Successfully read matrix 224s Matrix contains polymorphisms, interpreted as ambiguity 224s Setting default partition, dividing characters into 2 parts 224s Setting model defaults 224s Seed (for generating default start values) = 1711053811 224s WARNING: There are 2 characters incompatible with the specified 224s coding bias. These characters will be excluded. 224s Setting output file names to "hymfossil.nex.run." 224s Exiting data block 224s Reading mrbayes block 224s Defining charset called 'MV' 224s Defining charset called 'MS' 224s Defining charset called '12S' 224s Defining charset called '16S' 224s Defining charset called '18S' 224s Defining charset called '28S' 224s Defining charset called 'CO1' 224s Defining charset called 'CO1_12' 224s Defining charset called 'CO1_3' 224s Defining charset called 'Ef1aF2' 224s Defining charset called 'Ef1aF2_12' 224s Defining charset called 'Ef1aF2_3' 224s Defining charset called 'Ef1aF1' 224s Defining charset called 'Ef1aF1_12' 224s Defining charset called 'Ef1aF1_3' 224s Defining charset called 'Ef1a' 224s Defining charset called 'morph_ordered' 224s Defining charset called 'morph_excluded' 224s Defining charset called 'morph_constant' 224s Setting characters to ordered 224s Ctype was applied to 44 standard characters 224s Excluding character(s) 224s WARNING: There are 2 characters incompatible with the specified 224s coding bias. These characters will be excluded. 224s Excluding character(s) 224s Setting outgroup to taxon "Orthoptera" 224s Defining taxset called 'fossils' 224s Defining taxset called 'nomorphodata' 224s Defining taxset called 'nomolecudata' 224s Defining constraint called 'root' 224s Defining constraint called 'Hymenoptera' 224s Defining constraint called 'Holometabola' 224s Defining constraint called 'HolometabolaWithFossils' 224s Defining constraint called 'Pamphilioidea' 224s Defining constraint called 'Siricoidea' 224s Defining constraint called 'Apocrita' 224s Defining constraint called 'Xyelidae' 224s Defining constraint called 'Tenthredinidae' 224s Defining constraint called 'Vespina' 224s Defining partition called 'without_CO1_3' 224s Excluding character(s) 224s Setting without_CO1_3 as the partition, dividing characters into 7 parts. 224s Setting model defaults 224s Seed (for generating default start values) = 1687747316 224s Enabling Coding Variable for partition 1 224s Setting Rates to Gamma for partition 1 224s Successfully set likelihood model parameters to 224s partition 1 (if applicable) 224s Setting Nucmodel to 4by4 for partition 2 224s Setting Nucmodel to 4by4 for partition 3 224s Setting Nucmodel to 4by4 for partition 5 224s Setting Nucmodel to 4by4 for partition 6 224s Setting Nucmodel to 4by4 for partition 7 224s Set state frequency prior to default 224s Setting Nst to 6 for partition 2 224s Setting Nst to 6 for partition 3 224s Setting Nst to 6 for partition 5 224s Setting Nst to 6 for partition 6 224s Setting Nst to 6 for partition 7 224s Setting Rates to Gamma for partition 2 224s Setting Rates to Gamma for partition 3 224s Setting Rates to Gamma for partition 5 224s Setting Rates to Gamma for partition 6 224s Setting Rates to Gamma for partition 7 224s Setting Covarion to No for partition 2 224s Setting Covarion to No for partition 3 224s Setting Covarion to No for partition 5 224s Setting Covarion to No for partition 6 224s Setting Covarion to No for partition 7 224s Successfully set likelihood model parameters to 224s partitions 2, 3, 5, 6, and 7 (if applicable) 224s Setting Nucmodel to 4by4 for partition 4 224s Set state frequency prior to default 224s Setting Nst to 6 for partition 4 224s Setting Rates to Gamma for partition 4 224s Setting Covarion to No for partition 4 224s Successfully set likelihood model parameters to 224s partition 4 (if applicable) 224s Setting Statefreqpr to Fixed(Equal) for partition 4 224s Successfully set prior model parameters to 224s partition 4 (if applicable) 224s Unlinking 224s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 1 224s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 2 224s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 3 224s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 4 224s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 5 224s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 6 224s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 7 224s Successfully set prior model parameters to all 224s applicable data partitions 224s Setting age of taxon 'Triassoxyela' to Uniform(228.00,242.00) 224s Setting age of taxon 'Asioxyela' to Uniform(228.00,242.00) 224s Setting age of taxon 'Nigrimonticola' to Uniform(152.00,163.00) 224s Setting age of taxon 'Gigantoxyelinae' to Uniform(125.00,145.00) 224s Setting age of taxon 'Spathoxyela' to Uniform(125.00,145.00) 224s Setting age of taxon 'Xyela_mesozoica' to Uniform(125.00,145.00) 224s Setting age of taxon 'Angaridyela' to Uniform(125.00,145.00) 224s Setting age of taxon 'Xyelotoma' to Uniform(152.00,163.00) 224s Setting age of taxon 'Undatoma' to Uniform(145.00,152.00) 224s Setting age of taxon 'Dahuratoma' to Uniform(133.00,135.00) 224s Setting age of taxon 'Mesolyda' to Uniform(152.00,163.00) 224s Setting age of taxon 'Turgidontes' to Uniform(133.00,135.00) 224s Setting age of taxon 'Aulidontes' to Uniform(152.00,163.00) 224s Setting age of taxon 'Protosirex' to Uniform(152.00,163.00) 224s Setting age of taxon 'Aulisca' to Uniform(152.00,163.00) 224s Setting age of taxon 'Anaxyela' to Uniform(152.00,163.00) 224s Setting age of taxon 'Syntexyela' to Uniform(152.00,163.00) 224s Setting age of taxon 'Karatavites' to Uniform(152.00,163.00) 224s Setting age of taxon 'Stephanogaster' to Uniform(152.00,163.00) 224s Setting age of taxon 'Leptephialtites' to Uniform(152.00,163.00) 224s Setting age of taxon 'Cleistogaster' to Uniform(168.00,191.00) 224s Setting age of taxon 'Sepulca' to Uniform(152.00,163.00) 224s Setting age of taxon 'Onochoius' to Uniform(125.00,145.00) 224s Setting age of taxon 'Ghilarella' to Uniform(113.00,125.00) 224s Setting age of taxon 'Paroryssus' to Uniform(152.00,163.00) 224s Setting age of taxon 'Praeoryssus' to Uniform(152.00,163.00) 224s Setting age of taxon 'Mesorussus' to Uniform(94.00,100.00) 224s Setting age of taxon 'Trematothorax' to Uniform(125.00,145.00) 224s Setting age of taxon 'Thoracotrema' to Uniform(113.00,125.00) 224s Setting age of taxon 'Prosyntexis' to Uniform(80.00,86.00) 224s Setting age of taxon 'Kulbastavia' to Uniform(152.00,163.00) 224s Setting age of taxon 'Brachysyntexis' to Uniform(152.00,163.00) 224s Setting age of taxon 'Symphytopterus' to Uniform(152.00,163.00) 224s Setting age of taxon 'Eoxyela' to Uniform(168.00,191.00) 224s Setting age of taxon 'Liadoxyela' to Uniform(168.00,191.00) 224s Setting age of taxon 'Abrotoxyela' to Uniform(161.00,168.00) 224s Setting age of taxon 'Pseudoxyelocerus' to Uniform(182.00,183.00) 224s Setting age of taxon 'Palaeathalia' to Uniform(125.00,145.00) 224s Setting age of taxon 'Ferganolyda' to Uniform(168.00,191.00) 224s Setting age of taxon 'PamphiliidaeUndesc' to Uniform(161.00,168.00) 224s Setting age of taxon 'Rudisiricius' to Uniform(161.00,168.00) 224s Setting age of taxon 'Sogutia' to Uniform(174.00,201.00) 224s Setting age of taxon 'Xyelula' to Uniform(182.00,183.00) 224s Setting age of taxon 'Brigittepterus' to Uniform(182.00,183.00) 224s Setting age of taxon 'Grimmaratavites' to Uniform(182.00,183.00) 224s Excluding taxa 225s Setting Brlenspr to Clock:Fossilization for partition 1 225s Setting Brlenspr to Clock:Fossilization for partition 2 225s Setting Brlenspr to Clock:Fossilization for partition 3 225s Setting Brlenspr to Clock:Fossilization for partition 4 225s Setting Brlenspr to Clock:Fossilization for partition 5 225s Setting Brlenspr to Clock:Fossilization for partition 6 225s Setting Brlenspr to Clock:Fossilization for partition 7 225s Successfully set prior model parameters to all 225s applicable data partitions 225s Setting Speciationpr to Exponential(20.00) for partition 1 225s Setting Speciationpr to Exponential(20.00) for partition 2 225s Setting Speciationpr to Exponential(20.00) for partition 3 225s Setting Speciationpr to Exponential(20.00) for partition 4 225s Setting Speciationpr to Exponential(20.00) for partition 5 225s Setting Speciationpr to Exponential(20.00) for partition 6 225s Setting Speciationpr to Exponential(20.00) for partition 7 225s Successfully set prior model parameters to all 225s applicable data partitions 225s Setting Extinctionpr to Beta(1.00,1.00) for partition 1 225s Setting Extinctionpr to Beta(1.00,1.00) for partition 2 225s Setting Extinctionpr to Beta(1.00,1.00) for partition 3 225s Setting Extinctionpr to Beta(1.00,1.00) for partition 4 225s Setting Extinctionpr to Beta(1.00,1.00) for partition 5 225s Setting Extinctionpr to Beta(1.00,1.00) for partition 6 225s Setting Extinctionpr to Beta(1.00,1.00) for partition 7 225s Successfully set prior model parameters to all 225s applicable data partitions 225s Setting Fossilizationpr to Beta(1.00,1.00) for partition 1 225s Setting Fossilizationpr to Beta(1.00,1.00) for partition 2 225s Setting Fossilizationpr to Beta(1.00,1.00) for partition 3 225s Setting Fossilizationpr to Beta(1.00,1.00) for partition 4 225s Setting Fossilizationpr to Beta(1.00,1.00) for partition 5 225s Setting Fossilizationpr to Beta(1.00,1.00) for partition 6 225s Setting Fossilizationpr to Beta(1.00,1.00) for partition 7 225s Successfully set prior model parameters to all 225s applicable data partitions 225s Setting Sampleprob to 0.00050000 for partition 1 225s Setting Sampleprob to 0.00050000 for partition 2 225s Setting Sampleprob to 0.00050000 for partition 3 225s Setting Sampleprob to 0.00050000 for partition 4 225s Setting Sampleprob to 0.00050000 for partition 5 225s Setting Sampleprob to 0.00050000 for partition 6 225s Setting Sampleprob to 0.00050000 for partition 7 225s Successfully set prior model parameters to all 225s applicable data partitions 225s Setting SampleStrat to Diversity for partition 1 225s Setting SampleStrat to Diversity for partition 2 225s Setting SampleStrat to Diversity for partition 3 225s Setting SampleStrat to Diversity for partition 4 225s Setting SampleStrat to Diversity for partition 5 225s Setting SampleStrat to Diversity for partition 6 225s Setting SampleStrat to Diversity for partition 7 225s Successfully set prior model parameters to all 225s applicable data partitions 225s Setting Topologypr to Constraints for partition 1 225s Setting Topologypr to Constraints for partition 2 225s Setting Topologypr to Constraints for partition 3 225s Setting Topologypr to Constraints for partition 4 225s Setting Topologypr to Constraints for partition 5 225s Setting Topologypr to Constraints for partition 6 225s Setting Topologypr to Constraints for partition 7 225s Successfully set prior model parameters to all 225s applicable data partitions 225s Setting age of constraint node 'root' to Offsetexponential(315.00,396.00) 225s Setting age of constraint node 'HolometabolaWithFossils' to Offsetexponential(302.00,396.00) 225s Setting Nodeagepr to Calibrated for partition 1 225s Setting Nodeagepr to Calibrated for partition 2 225s Setting Nodeagepr to Calibrated for partition 3 225s Setting Nodeagepr to Calibrated for partition 4 225s Setting Nodeagepr to Calibrated for partition 5 225s Setting Nodeagepr to Calibrated for partition 6 225s Setting Nodeagepr to Calibrated for partition 7 225s Successfully set prior model parameters to all 225s applicable data partitions 225s Setting Clockvarpr to Igr for partition 1 225s Setting Clockvarpr to Igr for partition 2 225s Setting Clockvarpr to Igr for partition 3 225s Setting Clockvarpr to Igr for partition 4 225s Setting Clockvarpr to Igr for partition 5 225s Setting Clockvarpr to Igr for partition 6 225s Setting Clockvarpr to Igr for partition 7 225s Successfully set prior model parameters to all 225s applicable data partitions 225s Setting Igrvarpr to Exponential(37.00) for partition 1 225s Setting Igrvarpr to Exponential(37.00) for partition 2 225s Setting Igrvarpr to Exponential(37.00) for partition 3 225s Setting Igrvarpr to Exponential(37.00) for partition 4 225s Setting Igrvarpr to Exponential(37.00) for partition 5 225s Setting Igrvarpr to Exponential(37.00) for partition 6 225s Setting Igrvarpr to Exponential(37.00) for partition 7 225s Successfully set prior model parameters to all 225s applicable data partitions 225s Setting Clockratepr to Lognormal(-7.10,0.50) 225s Setting Clockratepr to Lognormal(-7.10,0.50) 225s Setting Clockratepr to Lognormal(-7.10,0.50) 225s Setting Clockratepr to Lognormal(-7.10,0.50) 225s Setting Clockratepr to Lognormal(-7.10,0.50) 225s Setting Clockratepr to Lognormal(-7.10,0.50) 225s Setting Clockratepr to Lognormal(-7.10,0.50) 225s Successfully set prior model parameters to all 225s applicable data partitions 225s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 225s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 225s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 225s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 225s Setting number of runs to 4 225s Setting heating parameter to 0.070000 225s Setting number of generations to 100000000 225s Setting sample frequency to 1000 225s Setting print frequency to 10000 225s Setting diagnosing frequency to 50000 225s Setting chain output file names to "hymfossil.nex.run.

" 225s Successfully set chain parameters 225s Exiting mrbayes block 225s Reached end of file 225s 225s Tasks completed, exiting program because mode is noninteractive 225s To return control to the command line after completion of file processing, 225s set mode to interactive with 'mb -i ' (i is for interactive) 225s or use 'set mode=interactive' 225s 225s autopkgtest [20:43:32]: test run-unit-test: -----------------------] 226s run-unit-test PASS 226s autopkgtest [20:43:33]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 226s autopkgtest [20:43:33]: @@@@@@@@@@@@@@@@@@@@ summary 226s run-unit-test PASS 238s Creating nova instance adt-noble-s390x-mrbayes-20240321-203947-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240321.img (UUID f7ee8f0f-480f-4014-94f0-3be2a19e259d)...