0s autopkgtest [09:28:12]: starting date and time: 2024-03-23 09:28:12+0000 0s autopkgtest [09:28:12]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [09:28:12]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vcxmamya/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade mirtop --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-24.secgroup --name adt-noble-s390x-mirtop-20240323-092812-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 80s autopkgtest [09:29:32]: testbed dpkg architecture: s390x 80s autopkgtest [09:29:32]: testbed apt version: 2.7.12 80s autopkgtest [09:29:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 81s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 82s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 82s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 82s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 82s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3972 kB] 82s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [651 kB] 82s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 82s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 82s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 82s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4148 kB] 82s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 82s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB] 82s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 84s Fetched 9504 kB in 2s (3967 kB/s) 87s Reading package lists... 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Calculating upgrade... 88s The following packages will be REMOVED: 88s libssl3 88s The following NEW packages will be installed: 88s libssl3t64 88s The following packages have been kept back: 88s curl 88s The following packages will be upgraded: 88s libbsd0 libc-bin libc6 locales openssl 88s 5 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 88s Need to get 10.5 MB of archives. 88s After this operation, 241 kB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libc6 s390x 2.39-0ubuntu6 [2847 kB] 88s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc-bin s390x 2.39-0ubuntu6 [654 kB] 88s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB] 88s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB] 89s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1 [46.7 kB] 89s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x locales all 2.39-0ubuntu6 [4232 kB] 89s Preconfiguring packages ... 89s Fetched 10.5 MB in 1s (11.3 MB/s) 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 89s Preparing to unpack .../libc6_2.39-0ubuntu6_s390x.deb ... 89s Unpacking libc6:s390x (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 89s Setting up libc6:s390x (2.39-0ubuntu6) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 90s Preparing to unpack .../libc-bin_2.39-0ubuntu6_s390x.deb ... 90s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 90s Setting up libc-bin (2.39-0ubuntu6) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 90s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ... 90s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 90s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 90s wget depends on libssl3 (>= 3.0.0). 90s tnftp depends on libssl3 (>= 3.0.0). 90s tcpdump depends on libssl3 (>= 3.0.0). 90s systemd-resolved depends on libssl3 (>= 3.0.0). 90s systemd depends on libssl3 (>= 3.0.0). 90s sudo depends on libssl3 (>= 3.0.0). 90s s390-tools depends on libssl3 (>= 3.0.0). 90s rsync depends on libssl3 (>= 3.0.0). 90s python3-cryptography depends on libssl3 (>= 3.0.0). 90s openssh-server depends on libssl3 (>= 3.0.10). 90s openssh-client depends on libssl3 (>= 3.0.10). 90s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 90s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 90s libssh-4:s390x depends on libssl3 (>= 3.0.0). 90s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 90s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 90s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 90s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 90s libnvme1 depends on libssl3 (>= 3.0.0). 90s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 90s libkmod2:s390x depends on libssl3 (>= 3.0.0). 90s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 90s libcurl4:s390x depends on libssl3 (>= 3.0.0). 90s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 90s kmod depends on libssl3 (>= 3.0.0). 90s dhcpcd-base depends on libssl3 (>= 3.0.0). 90s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 90s 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 90s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 90s Selecting previously unselected package libssl3t64:s390x. 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52159 files and directories currently installed.) 90s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ... 90s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ... 90s Preparing to unpack .../libbsd0_0.12.1-1_s390x.deb ... 90s Unpacking libbsd0:s390x (0.12.1-1) over (0.11.8-1) ... 90s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 90s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 90s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ... 90s Setting up locales (2.39-0ubuntu6) ... 91s Generating locales (this might take a while)... 92s en_US.UTF-8... done 92s Generation complete. 92s Setting up openssl (3.0.13-0ubuntu2) ... 92s Setting up libbsd0:s390x (0.12.1-1) ... 92s Processing triggers for man-db (2.12.0-3) ... 93s Processing triggers for libc-bin (2.39-0ubuntu6) ... 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 94s Unknown architecture, assuming PC-style ttyS0 94s sh: Attempting to set up Debian/Ubuntu apt sources automatically 94s sh: Distribution appears to be Ubuntu 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s eatmydata is already the newest version (131-1). 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s dbus is already the newest version (1.14.10-4ubuntu1). 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s rng-tools-debian is already the newest version (2.4). 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s The following packages will be REMOVED: 96s cloud-init* python3-configobj* python3-debconf* 96s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 96s After this operation, 3256 kB disk space will be freed. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52172 files and directories currently installed.) 96s Removing cloud-init (24.1.2-0ubuntu1) ... 97s Removing python3-configobj (5.0.8-3) ... 97s Removing python3-debconf (1.5.86) ... 97s Processing triggers for man-db (2.12.0-3) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51783 files and directories currently installed.) 97s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 98s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 98s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 98s invoke-rc.d: policy-rc.d denied execution of try-restart. 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s linux-generic is already the newest version (6.8.0-11.11+1). 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 99s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 99s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 100s Reading package lists... 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s Calculating upgrade... 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s autopkgtest [09:29:53]: rebooting testbed after setup commands that affected boot 118s autopkgtest [09:30:10]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 120s autopkgtest [09:30:12]: @@@@@@@@@@@@@@@@@@@@ apt-source mirtop 123s Get:1 http://ftpmaster.internal/ubuntu noble/universe mirtop 0.4.25-5 (dsc) [1697 B] 123s Get:2 http://ftpmaster.internal/ubuntu noble/universe mirtop 0.4.25-5 (tar) [720 kB] 123s Get:3 http://ftpmaster.internal/ubuntu noble/universe mirtop 0.4.25-5 (diff) [10.7 kB] 123s gpgv: Signature made Sun Feb 4 10:03:14 2024 UTC 123s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 123s gpgv: Can't check signature: No public key 123s dpkg-source: warning: cannot verify inline signature for ./mirtop_0.4.25-5.dsc: no acceptable signature found 123s autopkgtest [09:30:15]: testing package mirtop version 0.4.25-5 125s autopkgtest [09:30:17]: build not needed 125s autopkgtest [09:30:17]: test run-unit-test: preparing testbed 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Starting pkgProblemResolver with broken count: 1 130s Starting 2 pkgProblemResolver with broken count: 1 130s Investigating (0) python3-mirtop:s390x < none -> 0.4.25-5 @un puN Ib > 130s Broken python3-mirtop:s390x Depends on python3-pysam:s390x < none @un H > 130s Broken python3-mirtop:s390x Depends on python3-pybedtools:s390x < none @un H > 130s Broken python3-mirtop:s390x Depends on python3-pandas:s390x < none | 2.1.4+dfsg-4ubuntu2 @un uH > 130s Considering python3-pandas:s390x 1 as a solution to python3-mirtop:s390x 1 130s Re-Instated python3-dateutil:s390x 130s Re-Instated libblas3:s390x 130s Re-Instated libgfortran5:s390x 130s Re-Instated liblapack3:s390x 130s Re-Instated python3-numpy:s390x 130s Re-Instated python3-pandas-lib:s390x 130s Re-Instated python3-pandas:s390x 130s Broken python3-mirtop:s390x Depends on python3-biopython:s390x < none | 1.81+dfsg-3 @un uH > 130s Considering python3-biopython:s390x 1 as a solution to python3-mirtop:s390x 1 130s Re-Instated libfreetype6:s390x 130s Re-Instated libimagequant0:s390x 130s Re-Instated libjpeg-turbo8:s390x 130s Re-Instated libjpeg8:s390x 130s Re-Instated liblcms2-2:s390x 130s Re-Instated libopenjp2-7:s390x 130s Re-Instated libgraphite2-3:s390x 130s Re-Instated libharfbuzz0b:s390x 130s Re-Instated libraqm0:s390x 130s Re-Instated libjbig0:s390x 130s Re-Instated libsharpyuv0:s390x 130s Re-Instated libwebp7:s390x 130s Re-Instated libtiff6:s390x 130s Re-Instated libwebpdemux2:s390x 130s Re-Instated libwebpmux3:s390x 130s Re-Instated python3-pil:s390x 130s Re-Instated fonts-dejavu-mono:s390x 130s Re-Instated fonts-dejavu-core:s390x 130s Re-Instated fontconfig-config:s390x 130s Re-Instated libfontconfig1:s390x 130s Re-Instated libpixman-1-0:s390x 130s Re-Instated libxcb-render0:s390x 130s Re-Instated libxcb-shm0:s390x 130s Re-Instated libxrender1:s390x 130s Re-Instated libcairo2:s390x 130s Re-Instated python3-cairo:s390x 130s Re-Instated python3-freetype:s390x 130s Re-Instated python3-rlpycairo:s390x 130s Re-Instated fonts-dejavu-extra:s390x 130s Re-Instated libfontenc1:s390x 130s Re-Instated x11-common:s390x 130s Re-Instated xfonts-encodings:s390x 130s Re-Instated xfonts-utils:s390x 130s Re-Instated fonts-urw-base35:s390x 130s Re-Instated python3-reportlab:s390x 130s Re-Instated sgml-base:s390x 130s Re-Instated xml-core:s390x 130s Re-Instated w3c-sgml-lib:s390x 130s Re-Instated python3-biopython:s390x 130s Done 130s Some packages could not be installed. This may mean that you have 130s requested an impossible situation or if you are using the unstable 130s distribution that some required packages have not yet been created 130s or been moved out of Incoming. 130s The following information may help to resolve the situation: 130s 130s The following packages have unmet dependencies: 130s python3-mirtop : Depends: python3-pysam but it is not installable 130s Depends: python3-pybedtools but it is not installable 131s E: Unable to correct problems, you have held broken packages. 131s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Starting pkgProblemResolver with broken count: 1 131s Starting 2 pkgProblemResolver with broken count: 1 131s Investigating (0) python3-mirtop:s390x < none -> 0.4.25-5 @un puN Ib > 131s Broken python3-mirtop:s390x Depends on python3-pysam:s390x < none @un H > 132s Broken python3-mirtop:s390x Depends on python3-pybedtools:s390x < none @un H > 132s Broken python3-mirtop:s390x Depends on python3-pandas:s390x < none | 2.1.4+dfsg-4ubuntu2 @un uH > 132s Considering python3-pandas:s390x 1 as a solution to python3-mirtop:s390x 1 132s Re-Instated python3-dateutil:s390x 132s Re-Instated libblas3:s390x 132s Re-Instated libgfortran5:s390x 132s Re-Instated liblapack3:s390x 132s Re-Instated python3-numpy:s390x 132s Re-Instated python3-pandas-lib:s390x 132s Re-Instated python3-pandas:s390x 132s Broken python3-mirtop:s390x Depends on python3-biopython:s390x < none | 1.81+dfsg-3 @un uH > 132s Considering python3-biopython:s390x 1 as a solution to python3-mirtop:s390x 1 132s Re-Instated libfreetype6:s390x 132s Re-Instated libimagequant0:s390x 132s Re-Instated libjpeg-turbo8:s390x 132s Re-Instated libjpeg8:s390x 132s Re-Instated liblcms2-2:s390x 132s Re-Instated libopenjp2-7:s390x 132s Re-Instated libgraphite2-3:s390x 132s Re-Instated libharfbuzz0b:s390x 132s Re-Instated libraqm0:s390x 132s Re-Instated libjbig0:s390x 132s Re-Instated libsharpyuv0:s390x 132s Re-Instated libwebp7:s390x 132s Re-Instated libtiff6:s390x 132s Re-Instated libwebpdemux2:s390x 132s Re-Instated libwebpmux3:s390x 132s Re-Instated python3-pil:s390x 132s Re-Instated fonts-dejavu-mono:s390x 132s Re-Instated fonts-dejavu-core:s390x 132s Re-Instated fontconfig-config:s390x 132s Re-Instated libfontconfig1:s390x 132s Re-Instated libpixman-1-0:s390x 132s Re-Instated libxcb-render0:s390x 132s Re-Instated libxcb-shm0:s390x 132s Re-Instated libxrender1:s390x 132s Re-Instated libcairo2:s390x 132s Re-Instated python3-cairo:s390x 132s Re-Instated python3-freetype:s390x 132s Re-Instated python3-rlpycairo:s390x 132s Re-Instated fonts-dejavu-extra:s390x 132s Re-Instated libfontenc1:s390x 132s Re-Instated x11-common:s390x 132s Re-Instated xfonts-encodings:s390x 132s Re-Instated xfonts-utils:s390x 132s Re-Instated fonts-urw-base35:s390x 132s Re-Instated python3-reportlab:s390x 132s Re-Instated sgml-base:s390x 132s Re-Instated xml-core:s390x 132s Re-Instated w3c-sgml-lib:s390x 132s Re-Instated python3-biopython:s390x 132s Done 132s Some packages could not be installed. This may mean that you have 132s requested an impossible situation or if you are using the unstable 132s distribution that some required packages have not yet been created 132s or been moved out of Incoming. 132s The following information may help to resolve the situation: 132s 132s The following packages have unmet dependencies: 132s python3-mirtop : Depends: python3-pysam but it is not installable 132s Depends: python3-pybedtools but it is not installable 132s E: Unable to correct problems, you have held broken packages. 132s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Starting pkgProblemResolver with broken count: 1 132s Starting 2 pkgProblemResolver with broken count: 1 132s Investigating (0) python3-mirtop:s390x < none -> 0.4.25-5 @un puN Ib > 132s Broken python3-mirtop:s390x Depends on python3-pysam:s390x < none @un H > 132s Broken python3-mirtop:s390x Depends on python3-pybedtools:s390x < none @un H > 132s Broken python3-mirtop:s390x Depends on python3-pandas:s390x < none | 2.1.4+dfsg-4ubuntu2 @un uH > 132s Considering python3-pandas:s390x 1 as a solution to python3-mirtop:s390x 10000 132s Re-Instated python3-dateutil:s390x 132s Re-Instated libblas3:s390x 132s Re-Instated libgfortran5:s390x 132s Re-Instated liblapack3:s390x 132s Re-Instated python3-numpy:s390x 132s Re-Instated python3-pandas-lib:s390x 132s Re-Instated python3-pandas:s390x 132s Broken python3-mirtop:s390x Depends on python3-biopython:s390x < none | 1.81+dfsg-3 @un uH > 132s Considering python3-biopython:s390x 1 as a solution to python3-mirtop:s390x 10000 132s Re-Instated libfreetype6:s390x 132s Re-Instated libimagequant0:s390x 132s Re-Instated libjpeg-turbo8:s390x 132s Re-Instated libjpeg8:s390x 132s Re-Instated liblcms2-2:s390x 132s Re-Instated libopenjp2-7:s390x 132s Re-Instated libgraphite2-3:s390x 132s Re-Instated libharfbuzz0b:s390x 132s Re-Instated libraqm0:s390x 132s Re-Instated libjbig0:s390x 132s Re-Instated libsharpyuv0:s390x 132s Re-Instated libwebp7:s390x 132s Re-Instated libtiff6:s390x 132s Re-Instated libwebpdemux2:s390x 132s Re-Instated libwebpmux3:s390x 132s Re-Instated python3-pil:s390x 132s Re-Instated fonts-dejavu-mono:s390x 132s Re-Instated fonts-dejavu-core:s390x 132s Re-Instated fontconfig-config:s390x 132s Re-Instated libfontconfig1:s390x 132s Re-Instated libpixman-1-0:s390x 132s Re-Instated libxcb-render0:s390x 132s Re-Instated libxcb-shm0:s390x 132s Re-Instated libxrender1:s390x 132s Re-Instated libcairo2:s390x 132s Re-Instated python3-cairo:s390x 132s Re-Instated python3-freetype:s390x 132s Re-Instated python3-rlpycairo:s390x 132s Re-Instated fonts-dejavu-extra:s390x 132s Re-Instated libfontenc1:s390x 132s Re-Instated x11-common:s390x 132s Re-Instated xfonts-encodings:s390x 132s Re-Instated xfonts-utils:s390x 132s Re-Instated fonts-urw-base35:s390x 132s Re-Instated python3-reportlab:s390x 132s Re-Instated sgml-base:s390x 132s Re-Instated xml-core:s390x 132s Re-Instated w3c-sgml-lib:s390x 132s Re-Instated python3-biopython:s390x 132s Done 132s Some packages could not be installed. This may mean that you have 132s requested an impossible situation or if you are using the unstable 132s distribution that some required packages have not yet been created 132s or been moved out of Incoming. 132s The following information may help to resolve the situation: 132s 132s The following packages have unmet dependencies: 132s python3-mirtop : Depends: python3-pysam but it is not installable 132s Depends: python3-pybedtools but it is not installable 132s E: Unable to correct problems, you have held broken packages. 132s run-unit-test FAIL badpkg 132s blame: mirtop 132s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 132s autopkgtest [09:30:24]: test autodep8-python3: preparing testbed 234s autopkgtest [09:32:06]: testbed dpkg architecture: s390x 234s autopkgtest [09:32:06]: testbed apt version: 2.7.12 234s autopkgtest [09:32:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 235s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 235s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 235s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 235s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3972 kB] 235s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 235s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [651 kB] 235s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 235s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 235s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 235s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4148 kB] 235s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 235s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB] 235s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 238s Fetched 9504 kB in 2s (4055 kB/s) 238s Reading package lists... 240s Reading package lists... 240s Building dependency tree... 240s Reading state information... 240s Calculating upgrade... 241s The following packages will be REMOVED: 241s libssl3 241s The following NEW packages will be installed: 241s libssl3t64 241s The following packages have been kept back: 241s curl 241s The following packages will be upgraded: 241s libbsd0 libc-bin libc6 locales openssl 241s 5 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 241s Need to get 10.5 MB of archives. 241s After this operation, 241 kB of additional disk space will be used. 241s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libc6 s390x 2.39-0ubuntu6 [2847 kB] 241s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc-bin s390x 2.39-0ubuntu6 [654 kB] 241s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB] 241s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB] 241s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1 [46.7 kB] 241s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x locales all 2.39-0ubuntu6 [4232 kB] 242s Preconfiguring packages ... 242s Fetched 10.5 MB in 1s (10.2 MB/s) 242s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 242s Preparing to unpack .../libc6_2.39-0ubuntu6_s390x.deb ... 242s Unpacking libc6:s390x (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 242s Setting up libc6:s390x (2.39-0ubuntu6) ... 243s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 243s Preparing to unpack .../libc-bin_2.39-0ubuntu6_s390x.deb ... 243s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 243s Setting up libc-bin (2.39-0ubuntu6) ... 243s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 243s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ... 243s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 243s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 243s wget depends on libssl3 (>= 3.0.0). 243s tnftp depends on libssl3 (>= 3.0.0). 243s tcpdump depends on libssl3 (>= 3.0.0). 243s systemd-resolved depends on libssl3 (>= 3.0.0). 243s systemd depends on libssl3 (>= 3.0.0). 243s sudo depends on libssl3 (>= 3.0.0). 243s s390-tools depends on libssl3 (>= 3.0.0). 243s rsync depends on libssl3 (>= 3.0.0). 243s python3-cryptography depends on libssl3 (>= 3.0.0). 243s openssh-server depends on libssl3 (>= 3.0.10). 243s openssh-client depends on libssl3 (>= 3.0.10). 243s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 243s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 243s libssh-4:s390x depends on libssl3 (>= 3.0.0). 243s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 243s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 243s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 243s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 243s libnvme1 depends on libssl3 (>= 3.0.0). 243s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 243s libkmod2:s390x depends on libssl3 (>= 3.0.0). 243s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 243s libcurl4:s390x depends on libssl3 (>= 3.0.0). 243s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 243s kmod depends on libssl3 (>= 3.0.0). 243s dhcpcd-base depends on libssl3 (>= 3.0.0). 243s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 243s 243s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 243s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 243s Selecting previously unselected package libssl3t64:s390x. 243s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52159 files and directories currently installed.) 243s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ... 243s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ... 243s Preparing to unpack .../libbsd0_0.12.1-1_s390x.deb ... 243s Unpacking libbsd0:s390x (0.12.1-1) over (0.11.8-1) ... 243s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 243s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 243s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ... 243s Setting up locales (2.39-0ubuntu6) ... 244s Generating locales (this might take a while)... 245s en_US.UTF-8... done 245s Generation complete. 245s Setting up openssl (3.0.13-0ubuntu2) ... 245s Setting up libbsd0:s390x (0.12.1-1) ... 245s Processing triggers for man-db (2.12.0-3) ... 246s Processing triggers for libc-bin (2.39-0ubuntu6) ... 247s Reading package lists... 247s Building dependency tree... 247s Reading state information... 247s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 247s Unknown architecture, assuming PC-style ttyS0 247s sh: Attempting to set up Debian/Ubuntu apt sources automatically 247s sh: Distribution appears to be Ubuntu 249s Reading package lists... 249s Building dependency tree... 249s Reading state information... 249s eatmydata is already the newest version (131-1). 249s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 249s Reading package lists... 249s Building dependency tree... 249s Reading state information... 249s dbus is already the newest version (1.14.10-4ubuntu1). 249s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 250s Reading package lists... 250s Building dependency tree... 250s Reading state information... 250s rng-tools-debian is already the newest version (2.4). 250s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 250s Reading package lists... 250s Building dependency tree... 250s Reading state information... 250s The following packages will be REMOVED: 250s cloud-init* python3-configobj* python3-debconf* 250s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 250s After this operation, 3256 kB disk space will be freed. 250s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52172 files and directories currently installed.) 250s Removing cloud-init (24.1.2-0ubuntu1) ... 251s Removing python3-configobj (5.0.8-3) ... 251s Removing python3-debconf (1.5.86) ... 251s Processing triggers for man-db (2.12.0-3) ... 251s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51783 files and directories currently installed.) 251s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 252s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 252s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 252s invoke-rc.d: policy-rc.d denied execution of try-restart. 252s Reading package lists... 252s Building dependency tree... 252s Reading state information... 252s linux-generic is already the newest version (6.8.0-11.11+1). 252s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 253s Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] 253s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 253s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 253s Get:4 http://ftpmaster.internal/ubuntu noble/universe Sources [19.8 MB] 254s Get:5 http://ftpmaster.internal/ubuntu noble/universe s390x Packages [14.7 MB] 260s Fetched 34.8 MB in 7s (4959 kB/s) 261s Reading package lists... 261s Reading package lists... 261s Building dependency tree... 261s Reading state information... 262s Calculating upgrade... 262s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 262s Reading package lists... 262s Building dependency tree... 262s Reading state information... 262s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 262s autopkgtest [09:32:34]: rebooting testbed after setup commands that affected boot 286s Reading package lists... 286s Building dependency tree... 286s Reading state information... 286s Starting pkgProblemResolver with broken count: 1 286s Starting 2 pkgProblemResolver with broken count: 1 286s Investigating (0) python3-mirtop:s390x < none -> 0.4.25-5 @un puN Ib > 286s Broken python3-mirtop:s390x Depends on python3-pysam:s390x < none @un H > 286s Broken python3-mirtop:s390x Depends on python3-pybedtools:s390x < none @un H > 286s Broken python3-mirtop:s390x Depends on python3-pandas:s390x < none | 2.1.4+dfsg-4ubuntu2 @un uH > 286s Considering python3-pandas:s390x 1 as a solution to python3-mirtop:s390x 0 286s Re-Instated python3-dateutil:s390x 286s Re-Instated libblas3:s390x 286s Re-Instated libgfortran5:s390x 286s Re-Instated liblapack3:s390x 286s Re-Instated python3-numpy:s390x 286s Re-Instated python3-pandas-lib:s390x 286s Re-Instated python3-pandas:s390x 286s Broken python3-mirtop:s390x Depends on python3-biopython:s390x < none | 1.81+dfsg-3 @un uH > 286s Considering python3-biopython:s390x 1 as a solution to python3-mirtop:s390x 0 286s Re-Instated libfreetype6:s390x 286s Re-Instated libgomp1:s390x 286s Re-Instated libimagequant0:s390x 287s Re-Instated libjpeg-turbo8:s390x 287s Re-Instated libjpeg8:s390x 287s Re-Instated liblcms2-2:s390x 287s Re-Instated libopenjp2-7:s390x 287s Re-Instated libgraphite2-3:s390x 287s Re-Instated libharfbuzz0b:s390x 287s Re-Instated libraqm0:s390x 287s Re-Instated libdeflate0:s390x 287s Re-Instated libjbig0:s390x 287s Re-Instated libsharpyuv0:s390x 287s Re-Instated libwebp7:s390x 287s Re-Instated libtiff6:s390x 287s Re-Instated libwebpdemux2:s390x 287s Re-Instated libwebpmux3:s390x 287s Re-Instated python3-pil:s390x 287s Re-Instated fonts-dejavu-mono:s390x 287s Re-Instated fonts-dejavu-core:s390x 287s Re-Instated fontconfig-config:s390x 287s Re-Instated libfontconfig1:s390x 287s Re-Instated libpixman-1-0:s390x 287s Re-Instated libxcb-render0:s390x 287s Re-Instated libxcb-shm0:s390x 287s Re-Instated libxrender1:s390x 287s Re-Instated libcairo2:s390x 287s Re-Instated python3-cairo:s390x 287s Re-Instated python3-freetype:s390x 287s Re-Instated python3-rlpycairo:s390x 287s Re-Instated fonts-dejavu-extra:s390x 287s Re-Instated libfontenc1:s390x 287s Re-Instated x11-common:s390x 287s Re-Instated xfonts-encodings:s390x 287s Re-Instated xfonts-utils:s390x 287s Re-Instated fonts-urw-base35:s390x 287s Re-Instated python3-reportlab:s390x 287s Re-Instated sgml-base:s390x 287s Re-Instated xml-core:s390x 287s Re-Instated w3c-sgml-lib:s390x 287s Re-Instated python3-biopython:s390x 287s Done 287s Some packages could not be installed. This may mean that you have 287s requested an impossible situation or if you are using the unstable 287s distribution that some required packages have not yet been created 287s or been moved out of Incoming. 287s The following information may help to resolve the situation: 287s 287s The following packages have unmet dependencies: 287s python3-mirtop : Depends: python3-pysam but it is not installable 287s Depends: python3-pybedtools but it is not installable 287s E: Unable to correct problems, you have held broken packages. 287s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 287s Reading package lists... 287s Building dependency tree... 287s Reading state information... 287s Starting pkgProblemResolver with broken count: 1 288s Starting 2 pkgProblemResolver with broken count: 1 288s Investigating (0) python3-mirtop:s390x < none -> 0.4.25-5 @un puN Ib > 288s Broken python3-mirtop:s390x Depends on python3-pysam:s390x < none @un H > 288s Broken python3-mirtop:s390x Depends on python3-pybedtools:s390x < none @un H > 288s Broken python3-mirtop:s390x Depends on python3-pandas:s390x < none | 2.1.4+dfsg-4ubuntu2 @un uH > 288s Considering python3-pandas:s390x 1 as a solution to python3-mirtop:s390x 0 288s Re-Instated python3-dateutil:s390x 288s Re-Instated libblas3:s390x 288s Re-Instated libgfortran5:s390x 288s Re-Instated liblapack3:s390x 288s Re-Instated python3-numpy:s390x 288s Re-Instated python3-pandas-lib:s390x 288s Re-Instated python3-pandas:s390x 288s Broken python3-mirtop:s390x Depends on python3-biopython:s390x < none | 1.81+dfsg-3 @un uH > 288s Considering python3-biopython:s390x 1 as a solution to python3-mirtop:s390x 0 288s Re-Instated libfreetype6:s390x 288s Re-Instated libgomp1:s390x 288s Re-Instated libimagequant0:s390x 288s Re-Instated libjpeg-turbo8:s390x 288s Re-Instated libjpeg8:s390x 288s Re-Instated liblcms2-2:s390x 288s Re-Instated libopenjp2-7:s390x 288s Re-Instated libgraphite2-3:s390x 288s Re-Instated libharfbuzz0b:s390x 288s Re-Instated libraqm0:s390x 288s Re-Instated libdeflate0:s390x 288s Re-Instated libjbig0:s390x 288s Re-Instated libsharpyuv0:s390x 288s Re-Instated libwebp7:s390x 288s Re-Instated libtiff6:s390x 288s Re-Instated libwebpdemux2:s390x 288s Re-Instated libwebpmux3:s390x 288s Re-Instated python3-pil:s390x 288s Re-Instated fonts-dejavu-mono:s390x 288s Re-Instated fonts-dejavu-core:s390x 288s Re-Instated fontconfig-config:s390x 288s Re-Instated libfontconfig1:s390x 288s Re-Instated libpixman-1-0:s390x 288s Re-Instated libxcb-render0:s390x 288s Re-Instated libxcb-shm0:s390x 288s Re-Instated libxrender1:s390x 288s Re-Instated libcairo2:s390x 288s Re-Instated python3-cairo:s390x 288s Re-Instated python3-freetype:s390x 288s Re-Instated python3-rlpycairo:s390x 288s Re-Instated fonts-dejavu-extra:s390x 288s Re-Instated libfontenc1:s390x 288s Re-Instated x11-common:s390x 288s Re-Instated xfonts-encodings:s390x 288s Re-Instated xfonts-utils:s390x 288s Re-Instated fonts-urw-base35:s390x 288s Re-Instated python3-reportlab:s390x 288s Re-Instated sgml-base:s390x 288s Re-Instated xml-core:s390x 288s Re-Instated w3c-sgml-lib:s390x 288s Re-Instated python3-biopython:s390x 288s Done 288s Some packages could not be installed. This may mean that you have 288s requested an impossible situation or if you are using the unstable 288s distribution that some required packages have not yet been created 288s or been moved out of Incoming. 288s The following information may help to resolve the situation: 288s 288s The following packages have unmet dependencies: 288s python3-mirtop : Depends: python3-pysam but it is not installable 288s Depends: python3-pybedtools but it is not installable 288s E: Unable to correct problems, you have held broken packages. 288s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 288s Reading package lists... 288s Building dependency tree... 288s Reading state information... 288s Starting pkgProblemResolver with broken count: 1 288s Starting 2 pkgProblemResolver with broken count: 1 288s Investigating (0) python3-mirtop:s390x < none -> 0.4.25-5 @un puN Ib > 288s Broken python3-mirtop:s390x Depends on python3-pysam:s390x < none @un H > 288s Broken python3-mirtop:s390x Depends on python3-pybedtools:s390x < none @un H > 288s Broken python3-mirtop:s390x Depends on python3-pandas:s390x < none | 2.1.4+dfsg-4ubuntu2 @un uH > 288s Considering python3-pandas:s390x 1 as a solution to python3-mirtop:s390x 9999 288s Re-Instated python3-dateutil:s390x 288s Re-Instated libblas3:s390x 288s Re-Instated libgfortran5:s390x 288s Re-Instated liblapack3:s390x 288s Re-Instated python3-numpy:s390x 288s Re-Instated python3-pandas-lib:s390x 288s Re-Instated python3-pandas:s390x 288s Broken python3-mirtop:s390x Depends on python3-biopython:s390x < none | 1.81+dfsg-3 @un uH > 288s Considering python3-biopython:s390x 1 as a solution to python3-mirtop:s390x 9999 288s Re-Instated libfreetype6:s390x 288s Re-Instated libgomp1:s390x 288s Re-Instated libimagequant0:s390x 288s Re-Instated libjpeg-turbo8:s390x 288s Re-Instated libjpeg8:s390x 288s Re-Instated liblcms2-2:s390x 288s Re-Instated libopenjp2-7:s390x 288s Re-Instated libgraphite2-3:s390x 288s Re-Instated libharfbuzz0b:s390x 288s Re-Instated libraqm0:s390x 288s Re-Instated libdeflate0:s390x 288s Re-Instated libjbig0:s390x 288s Re-Instated libsharpyuv0:s390x 288s Re-Instated libwebp7:s390x 288s Re-Instated libtiff6:s390x 288s Re-Instated libwebpdemux2:s390x 288s Re-Instated libwebpmux3:s390x 288s Re-Instated python3-pil:s390x 288s Re-Instated fonts-dejavu-mono:s390x 288s Re-Instated fonts-dejavu-core:s390x 288s Re-Instated fontconfig-config:s390x 288s Re-Instated libfontconfig1:s390x 288s Re-Instated libpixman-1-0:s390x 288s Re-Instated libxcb-render0:s390x 288s Re-Instated libxcb-shm0:s390x 288s Re-Instated libxrender1:s390x 288s Re-Instated libcairo2:s390x 288s Re-Instated python3-cairo:s390x 288s Re-Instated python3-freetype:s390x 288s Re-Instated python3-rlpycairo:s390x 288s Re-Instated fonts-dejavu-extra:s390x 288s Re-Instated libfontenc1:s390x 288s Re-Instated x11-common:s390x 288s Re-Instated xfonts-encodings:s390x 288s Re-Instated xfonts-utils:s390x 288s Re-Instated fonts-urw-base35:s390x 288s Re-Instated python3-reportlab:s390x 288s Re-Instated sgml-base:s390x 288s Re-Instated xml-core:s390x 288s Re-Instated w3c-sgml-lib:s390x 288s Re-Instated python3-biopython:s390x 288s Done 288s Some packages could not be installed. This may mean that you have 288s requested an impossible situation or if you are using the unstable 288s distribution that some required packages have not yet been created 288s or been moved out of Incoming. 288s The following information may help to resolve the situation: 288s 288s The following packages have unmet dependencies: 288s python3-mirtop : Depends: python3-pysam but it is not installable 288s Depends: python3-pybedtools but it is not installable 288s E: Unable to correct problems, you have held broken packages. 288s autodep8-python3 FAIL badpkg 288s blame: mirtop 288s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 288s autopkgtest [09:33:00]: @@@@@@@@@@@@@@@@@@@@ summary 288s run-unit-test FAIL badpkg 288s blame: mirtop 288s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 288s autodep8-python3 FAIL badpkg 288s blame: mirtop 288s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 300s Creating nova instance adt-noble-s390x-mirtop-20240323-092812-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240322.img (UUID c8671f9a-0e89-48e3-af4f-3c79b89294e8)... 300s Creating nova instance adt-noble-s390x-mirtop-20240323-092812-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240322.img (UUID c8671f9a-0e89-48e3-af4f-3c79b89294e8)...