0s autopkgtest [03:45:03]: starting date and time: 2024-03-23 03:45:03+0000 0s autopkgtest [03:45:03]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [03:45:03]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.c8qnwtqk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:capnproto,src:openssl --apt-upgrade mash --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=capnproto/1.0.1-3build3 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-22.secgroup --name adt-noble-s390x-mash-20240323-034503-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 95s autopkgtest [03:46:38]: testbed dpkg architecture: s390x 95s autopkgtest [03:46:38]: testbed apt version: 2.7.12 95s autopkgtest [03:46:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 96s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 96s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 97s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4001 kB] 97s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 97s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.7 kB] 97s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [661 kB] 97s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 97s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 97s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 97s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4156 kB] 97s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 97s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [47.5 kB] 97s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 100s Fetched 9554 kB in 3s (3733 kB/s) 100s Reading package lists... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Calculating upgrade... 103s The following packages will be REMOVED: 103s libssl3 103s The following NEW packages will be installed: 103s libssl3t64 103s The following packages will be upgraded: 103s libbsd0 openssl 103s 2 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 103s Need to get 2731 kB of archives. 103s After this operation, 239 kB of additional disk space will be used. 103s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB] 104s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB] 104s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1 [46.7 kB] 104s Fetched 2731 kB in 1s (3949 kB/s) 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 104s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ... 104s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 104s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 104s wget depends on libssl3 (>= 3.0.0). 104s tnftp depends on libssl3 (>= 3.0.0). 104s tcpdump depends on libssl3 (>= 3.0.0). 104s systemd-resolved depends on libssl3 (>= 3.0.0). 104s systemd depends on libssl3 (>= 3.0.0). 104s sudo depends on libssl3 (>= 3.0.0). 104s s390-tools depends on libssl3 (>= 3.0.0). 104s rsync depends on libssl3 (>= 3.0.0). 104s python3-cryptography depends on libssl3 (>= 3.0.0). 104s openssh-server depends on libssl3 (>= 3.0.10). 104s openssh-client depends on libssl3 (>= 3.0.10). 104s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 104s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 104s libssh-4:s390x depends on libssl3 (>= 3.0.0). 104s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 104s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 104s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 104s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 104s libnvme1 depends on libssl3 (>= 3.0.0). 104s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 104s libkmod2:s390x depends on libssl3 (>= 3.0.0). 104s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 104s libcurl4:s390x depends on libssl3 (>= 3.0.0). 104s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 104s kmod depends on libssl3 (>= 3.0.0). 104s dhcpcd-base depends on libssl3 (>= 3.0.0). 104s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 104s 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 105s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 105s Selecting previously unselected package libssl3t64:s390x. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52159 files and directories currently installed.) 105s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ... 105s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ... 105s Preparing to unpack .../libbsd0_0.12.1-1_s390x.deb ... 105s Unpacking libbsd0:s390x (0.12.1-1) over (0.11.8-1) ... 105s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ... 105s Setting up openssl (3.0.13-0ubuntu2) ... 105s Setting up libbsd0:s390x (0.12.1-1) ... 105s Processing triggers for man-db (2.12.0-3) ... 105s Processing triggers for libc-bin (2.39-0ubuntu2) ... 105s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Unknown architecture, assuming PC-style ttyS0 106s sh: Attempting to set up Debian/Ubuntu apt sources automatically 106s sh: Distribution appears to be Ubuntu 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s eatmydata is already the newest version (131-1). 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s dbus is already the newest version (1.14.10-4ubuntu1). 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s rng-tools-debian is already the newest version (2.4). 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s The following packages will be REMOVED: 109s cloud-init* python3-configobj* python3-debconf* 109s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 109s After this operation, 3256 kB disk space will be freed. 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52172 files and directories currently installed.) 109s Removing cloud-init (24.1.2-0ubuntu1) ... 110s Removing python3-configobj (5.0.8-3) ... 110s Removing python3-debconf (1.5.86) ... 110s Processing triggers for man-db (2.12.0-3) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51783 files and directories currently installed.) 111s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 111s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 111s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 111s invoke-rc.d: policy-rc.d denied execution of try-restart. 111s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s linux-generic is already the newest version (6.8.0-11.11+1). 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 112s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 112s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 115s Reading package lists... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Calculating upgrade... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s autopkgtest [03:46:59]: rebooting testbed after setup commands that affected boot 131s autopkgtest [03:47:14]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 134s autopkgtest [03:47:17]: @@@@@@@@@@@@@@@@@@@@ apt-source mash 139s Get:1 http://ftpmaster.internal/ubuntu noble/universe mash 2.3+dfsg-6 (dsc) [2376 B] 139s Get:2 http://ftpmaster.internal/ubuntu noble/universe mash 2.3+dfsg-6 (tar) [3449 kB] 139s Get:3 http://ftpmaster.internal/ubuntu noble/universe mash 2.3+dfsg-6 (diff) [2158 kB] 140s gpgv: Signature made Mon Dec 18 21:52:17 2023 UTC 140s gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 140s gpgv: Can't check signature: No public key 140s dpkg-source: warning: cannot verify inline signature for ./mash_2.3+dfsg-6.dsc: no acceptable signature found 140s autopkgtest [03:47:23]: testing package mash version 2.3+dfsg-6 142s autopkgtest [03:47:25]: build not needed 153s autopkgtest [03:47:36]: test run-example: preparing testbed 156s Reading package lists... 157s Building dependency tree... 157s Reading state information... 157s Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 157s The following additional packages will be installed: 157s libcapnp-1.0.1 libgsl27 libgslcblas0 libmurmurhash2 mash 157s Suggested packages: 157s gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html 157s The following NEW packages will be installed: 157s autopkgtest-satdep libcapnp-1.0.1 libgsl27 libgslcblas0 libmurmurhash2 mash 157s 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 157s Need to get 2818 kB/2819 kB of archives. 157s After this operation, 8675 kB of additional disk space will be used. 157s Get:1 /tmp/autopkgtest.aVuUZ3/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [700 B] 157s Get:2 http://ftpmaster.internal/ubuntu noble/universe s390x libcapnp-1.0.1 s390x 1.0.1-3 [1405 kB] 158s Get:3 http://ftpmaster.internal/ubuntu noble/universe s390x libgslcblas0 s390x 2.7.1+dfsg-6ubuntu1 [147 kB] 158s Get:4 http://ftpmaster.internal/ubuntu noble/universe s390x libgsl27 s390x 2.7.1+dfsg-6ubuntu1 [1069 kB] 158s Get:5 http://ftpmaster.internal/ubuntu noble/universe s390x libmurmurhash2 s390x 1.6-1 [6162 B] 158s Get:6 http://ftpmaster.internal/ubuntu noble/universe s390x mash s390x 2.3+dfsg-6 [191 kB] 159s Fetched 2818 kB in 1s (2184 kB/s) 159s Selecting previously unselected package libcapnp-1.0.1:s390x. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51728 files and directories currently installed.) 159s Preparing to unpack .../0-libcapnp-1.0.1_1.0.1-3_s390x.deb ... 159s Unpacking libcapnp-1.0.1:s390x (1.0.1-3) ... 159s Selecting previously unselected package libgslcblas0:s390x. 159s Preparing to unpack .../1-libgslcblas0_2.7.1+dfsg-6ubuntu1_s390x.deb ... 159s Unpacking libgslcblas0:s390x (2.7.1+dfsg-6ubuntu1) ... 159s Selecting previously unselected package libgsl27:s390x. 159s Preparing to unpack .../2-libgsl27_2.7.1+dfsg-6ubuntu1_s390x.deb ... 159s Unpacking libgsl27:s390x (2.7.1+dfsg-6ubuntu1) ... 159s Selecting previously unselected package libmurmurhash2:s390x. 159s Preparing to unpack .../3-libmurmurhash2_1.6-1_s390x.deb ... 159s Unpacking libmurmurhash2:s390x (1.6-1) ... 159s Selecting previously unselected package mash. 159s Preparing to unpack .../4-mash_2.3+dfsg-6_s390x.deb ... 159s Unpacking mash (2.3+dfsg-6) ... 159s Selecting previously unselected package autopkgtest-satdep. 159s Preparing to unpack .../5-1-autopkgtest-satdep.deb ... 159s Unpacking autopkgtest-satdep (0) ... 159s Setting up libgslcblas0:s390x (2.7.1+dfsg-6ubuntu1) ... 159s Setting up libmurmurhash2:s390x (1.6-1) ... 159s Setting up libcapnp-1.0.1:s390x (1.0.1-3) ... 159s Setting up libgsl27:s390x (2.7.1+dfsg-6ubuntu1) ... 159s Setting up mash (2.3+dfsg-6) ... 159s Setting up autopkgtest-satdep (0) ... 159s Processing triggers for man-db (2.12.0-3) ... 159s Processing triggers for libc-bin (2.39-0ubuntu2) ... 162s (Reading database ... 51776 files and directories currently installed.) 162s Removing autopkgtest-satdep (0) ... 162s autopkgtest [03:47:45]: test run-example: [----------------------- 162s genome1.fna 162s genome2.fna 163s genome3.fna 163s Sketching genome1.fna (provide sketch file made with "mash sketch" to skip)...done. 163s genome1.fna genome2.fna 0.0222766 0 456/1000 163s Sketching genome1.fna... 164s Writing to genome1.fna.msh... 164s Sketching genome2.fna... 164s Writing to genome2.fna.msh... 164s genome1.fna genome2.fna 0.0222766 0 456/1000 164s Sketching genome1.fna... 164s Sketching genome2.fna... 165s Writing to reference.msh... 165s Header: 165s Hash function (seed): MurmurHash3_x64_128 (42) 165s K-mer size: 21 (64-bit hashes) 165s Alphabet: ACGT (canonical) 165s Target min-hashes per sketch: 1000 165s Sketches: 2 165s 165s Sketches: 165s [Hashes] [Length] [ID] [Comment] 165s 165s 1000 4639675 genome1.fna gi|49175990|ref|NC_000913.2| Escherichia coli str. K-12 substr. MG1655, complete genome 165s 165s 1000 5498450 genome2.fna gi|47118301|dbj|BA000007.2| Escherichia coli O157:H7 str. Sakai DNA, complete genome 165s 165s genome1.fna genome3.fna 0 0 1000/1000 165s genome2.fna genome3.fna 0.0222766 0 456/1000 165s autopkgtest [03:47:48]: test run-example: -----------------------] 166s autopkgtest [03:47:49]: test run-example: - - - - - - - - - - results - - - - - - - - - - 166s run-example PASS 166s autopkgtest [03:47:49]: @@@@@@@@@@@@@@@@@@@@ summary 166s run-example PASS 177s Creating nova instance adt-noble-s390x-mash-20240323-034503-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240322.img (UUID c8671f9a-0e89-48e3-af4f-3c79b89294e8)...