0s autopkgtest [12:04:50]: starting date and time: 2024-03-22 12:04:50+0000 0s autopkgtest [12:04:50]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [12:04:50]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8ib_7ty1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sphinx --apt-upgrade mash --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-21.secgroup --name adt-noble-s390x-mash-20240322-120450-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 92s autopkgtest [12:06:22]: testbed dpkg architecture: s390x 92s autopkgtest [12:06:22]: testbed apt version: 2.7.12 92s autopkgtest [12:06:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 93s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 93s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 94s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3807 kB] 94s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 94s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [54.0 kB] 94s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [665 kB] 94s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 94s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 94s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 94s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3992 kB] 94s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 94s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [45.1 kB] 94s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 96s Fetched 9195 kB in 3s (3442 kB/s) 97s Reading package lists... 99s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s Calculating upgrade... 100s The following packages will be upgraded: 100s cloud-init debianutils fonts-ubuntu-console python3-markupsafe 101s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Need to get 719 kB of archives. 101s After this operation, 11.3 kB disk space will be freed. 101s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x debianutils s390x 5.17 [90.1 kB] 101s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 101s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x python3-markupsafe s390x 2.1.5-1build1 [12.8 kB] 101s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x cloud-init all 24.1.2-0ubuntu1 [597 kB] 101s Preconfiguring packages ... 101s Fetched 719 kB in 1s (887 kB/s) 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 102s Preparing to unpack .../debianutils_5.17_s390x.deb ... 102s Unpacking debianutils (5.17) over (5.16) ... 102s Setting up debianutils (5.17) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 102s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 102s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 102s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_s390x.deb ... 102s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 102s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 102s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 102s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 102s Setting up cloud-init (24.1.2-0ubuntu1) ... 103s Setting up python3-markupsafe (2.1.5-1build1) ... 104s Processing triggers for man-db (2.12.0-3) ... 104s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Unknown architecture, assuming PC-style ttyS0 106s sh: Attempting to set up Debian/Ubuntu apt sources automatically 106s sh: Distribution appears to be Ubuntu 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s eatmydata is already the newest version (131-1). 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s dbus is already the newest version (1.14.10-4ubuntu1). 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s rng-tools-debian is already the newest version (2.4). 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s The following packages will be REMOVED: 109s cloud-init* python3-configobj* python3-debconf* 109s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 109s After this operation, 3256 kB disk space will be freed. 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 109s Removing cloud-init (24.1.2-0ubuntu1) ... 110s Removing python3-configobj (5.0.8-3) ... 110s Removing python3-debconf (1.5.86) ... 110s Processing triggers for man-db (2.12.0-3) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51781 files and directories currently installed.) 111s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 111s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 111s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 111s invoke-rc.d: policy-rc.d denied execution of try-restart. 111s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s linux-generic is already the newest version (6.8.0-11.11+1). 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 112s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 113s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 115s Reading package lists... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Calculating upgrade... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s autopkgtest [12:06:46]: rebooting testbed after setup commands that affected boot 132s autopkgtest [12:07:02]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 135s autopkgtest [12:07:05]: @@@@@@@@@@@@@@@@@@@@ apt-source mash 142s Get:1 http://ftpmaster.internal/ubuntu noble/universe mash 2.3+dfsg-6 (dsc) [2376 B] 142s Get:2 http://ftpmaster.internal/ubuntu noble/universe mash 2.3+dfsg-6 (tar) [3449 kB] 142s Get:3 http://ftpmaster.internal/ubuntu noble/universe mash 2.3+dfsg-6 (diff) [2158 kB] 142s gpgv: Signature made Mon Dec 18 21:52:17 2023 UTC 142s gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 142s gpgv: Can't check signature: No public key 142s dpkg-source: warning: cannot verify inline signature for ./mash_2.3+dfsg-6.dsc: no acceptable signature found 143s autopkgtest [12:07:13]: testing package mash version 2.3+dfsg-6 148s autopkgtest [12:07:18]: build not needed 164s autopkgtest [12:07:34]: test run-example: preparing testbed 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s Starting pkgProblemResolver with broken count: 0 170s Starting 2 pkgProblemResolver with broken count: 0 170s Done 170s The following additional packages will be installed: 170s libcapnp-1.0.1 libgsl27 libgslcblas0 libmurmurhash2 mash 170s Suggested packages: 170s gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html 170s The following NEW packages will be installed: 170s autopkgtest-satdep libcapnp-1.0.1 libgsl27 libgslcblas0 libmurmurhash2 mash 170s 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 170s Need to get 2818 kB/2819 kB of archives. 170s After this operation, 8675 kB of additional disk space will be used. 170s Get:1 /tmp/autopkgtest.EsbJzj/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [700 B] 170s Get:2 http://ftpmaster.internal/ubuntu noble/universe s390x libcapnp-1.0.1 s390x 1.0.1-3 [1405 kB] 171s Get:3 http://ftpmaster.internal/ubuntu noble/universe s390x libgslcblas0 s390x 2.7.1+dfsg-6ubuntu1 [147 kB] 171s Get:4 http://ftpmaster.internal/ubuntu noble/universe s390x libgsl27 s390x 2.7.1+dfsg-6ubuntu1 [1069 kB] 172s Get:5 http://ftpmaster.internal/ubuntu noble/universe s390x libmurmurhash2 s390x 1.6-1 [6162 B] 172s Get:6 http://ftpmaster.internal/ubuntu noble/universe s390x mash s390x 2.3+dfsg-6 [191 kB] 172s Fetched 2818 kB in 2s (1717 kB/s) 172s Selecting previously unselected package libcapnp-1.0.1:s390x. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51726 files and directories currently installed.) 172s Preparing to unpack .../0-libcapnp-1.0.1_1.0.1-3_s390x.deb ... 172s Unpacking libcapnp-1.0.1:s390x (1.0.1-3) ... 172s Selecting previously unselected package libgslcblas0:s390x. 172s Preparing to unpack .../1-libgslcblas0_2.7.1+dfsg-6ubuntu1_s390x.deb ... 172s Unpacking libgslcblas0:s390x (2.7.1+dfsg-6ubuntu1) ... 172s Selecting previously unselected package libgsl27:s390x. 172s Preparing to unpack .../2-libgsl27_2.7.1+dfsg-6ubuntu1_s390x.deb ... 172s Unpacking libgsl27:s390x (2.7.1+dfsg-6ubuntu1) ... 172s Selecting previously unselected package libmurmurhash2:s390x. 172s Preparing to unpack .../3-libmurmurhash2_1.6-1_s390x.deb ... 172s Unpacking libmurmurhash2:s390x (1.6-1) ... 172s Selecting previously unselected package mash. 172s Preparing to unpack .../4-mash_2.3+dfsg-6_s390x.deb ... 172s Unpacking mash (2.3+dfsg-6) ... 172s Selecting previously unselected package autopkgtest-satdep. 172s Preparing to unpack .../5-1-autopkgtest-satdep.deb ... 172s Unpacking autopkgtest-satdep (0) ... 172s Setting up libgslcblas0:s390x (2.7.1+dfsg-6ubuntu1) ... 172s Setting up libmurmurhash2:s390x (1.6-1) ... 172s Setting up libcapnp-1.0.1:s390x (1.0.1-3) ... 172s Setting up libgsl27:s390x (2.7.1+dfsg-6ubuntu1) ... 172s Setting up mash (2.3+dfsg-6) ... 172s Setting up autopkgtest-satdep (0) ... 172s Processing triggers for man-db (2.12.0-3) ... 173s Processing triggers for libc-bin (2.39-0ubuntu2) ... 175s (Reading database ... 51774 files and directories currently installed.) 175s Removing autopkgtest-satdep (0) ... 176s autopkgtest [12:07:46]: test run-example: [----------------------- 176s genome1.fna 176s genome2.fna 176s genome3.fna 176s Sketching genome1.fna (provide sketch file made with "mash sketch" to skip)...done. 177s genome1.fna genome2.fna 0.0222766 0 456/1000 177s Sketching genome1.fna... 177s Writing to genome1.fna.msh... 177s Sketching genome2.fna... 177s Writing to genome2.fna.msh... 177s genome1.fna genome2.fna 0.0222766 0 456/1000 177s Sketching genome1.fna... 177s Sketching genome2.fna... 179s Writing to reference.msh... 179s Header: 179s Hash function (seed): MurmurHash3_x64_128 (42) 179s K-mer size: 21 (64-bit hashes) 179s Alphabet: ACGT (canonical) 179s Target min-hashes per sketch: 1000 179s Sketches: 2 179s 179s Sketches: 179s [Hashes] [Length] [ID] [Comment] 179s 179s 1000 4639675 genome1.fna gi|49175990|ref|NC_000913.2| Escherichia coli str. K-12 substr. MG1655, complete genome 179s 179s 1000 5498450 genome2.fna gi|47118301|dbj|BA000007.2| Escherichia coli O157:H7 str. Sakai DNA, complete genome 179s 179s genome1.fna genome3.fna 0 0 1000/1000 179s genome2.fna genome3.fna 0.0222766 0 456/1000 179s autopkgtest [12:07:49]: test run-example: -----------------------] 180s autopkgtest [12:07:50]: test run-example: - - - - - - - - - - results - - - - - - - - - - 180s run-example PASS 180s autopkgtest [12:07:50]: @@@@@@@@@@@@@@@@@@@@ summary 180s run-example PASS 191s Creating nova instance adt-noble-s390x-mash-20240322-120450-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240321.img (UUID f7ee8f0f-480f-4014-94f0-3be2a19e259d)...