0s autopkgtest [19:59:28]: starting date and time: 2024-04-08 19:59:28+0000 0s autopkgtest [19:59:28]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [19:59:28]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.iazxy6el/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:curl --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=curl/8.5.0-2ubuntu10 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-s390x-2.secgroup --name adt-noble-s390x-lammps-20240408-195928-juju-7f2275-prod-proposed-migration-environment-2-f02c7374-2d92-430c-ae93-cb0b46c38aea --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 103s autopkgtest [20:01:11]: testbed dpkg architecture: s390x 103s autopkgtest [20:01:11]: testbed apt version: 2.7.14build2 103s autopkgtest [20:01:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 103s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 103s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [358 kB] 104s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [831 kB] 104s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [10.6 kB] 104s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4680 B] 104s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [279 kB] 104s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 104s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1192 B] 104s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 104s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [905 kB] 104s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 104s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [5120 B] 104s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 105s Fetched 2521 kB in 1s (2374 kB/s) 105s Reading package lists... 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s Calculating upgrade... 108s The following packages will be upgraded: 108s bash curl libcurl3t64-gnutls libcurl4t64 libpython3.12-minimal 108s libpython3.12-stdlib libsasl2-2 libsasl2-modules libsasl2-modules-db 108s python3-gi python3.12 python3.12-minimal 109s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 8183 kB of archives. 109s After this operation, 280 kB disk space will be freed. 109s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x bash s390x 5.2.21-2ubuntu4 [845 kB] 109s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x python3.12 s390x 3.12.2-5ubuntu3 [644 kB] 109s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12-stdlib s390x 3.12.2-5ubuntu3 [2066 kB] 109s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x python3.12-minimal s390x 3.12.2-5ubuntu3 [2459 kB] 109s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12-minimal s390x 3.12.2-5ubuntu3 [830 kB] 109s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x python3-gi s390x 3.48.2-1 [236 kB] 109s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu10 [227 kB] 109s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu10 [363 kB] 109s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl3t64-gnutls s390x 8.5.0-2ubuntu10 [356 kB] 109s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-modules-db s390x 2.1.28+dfsg1-5ubuntu3 [21.3 kB] 109s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-2 s390x 2.1.28+dfsg1-5ubuntu3 [57.8 kB] 109s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-modules s390x 2.1.28+dfsg1-5ubuntu3 [76.7 kB] 110s Fetched 8183 kB in 1s (9452 kB/s) 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78332 files and directories currently installed.) 110s Preparing to unpack .../bash_5.2.21-2ubuntu4_s390x.deb ... 110s Unpacking bash (5.2.21-2ubuntu4) over (5.2.21-2ubuntu2) ... 110s Setting up bash (5.2.21-2ubuntu4) ... 110s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78332 files and directories currently installed.) 110s Preparing to unpack .../00-python3.12_3.12.2-5ubuntu3_s390x.deb ... 111s Unpacking python3.12 (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 111s Preparing to unpack .../01-libpython3.12-stdlib_3.12.2-5ubuntu3_s390x.deb ... 111s Unpacking libpython3.12-stdlib:s390x (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 111s Preparing to unpack .../02-python3.12-minimal_3.12.2-5ubuntu3_s390x.deb ... 111s Unpacking python3.12-minimal (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 111s Preparing to unpack .../03-libpython3.12-minimal_3.12.2-5ubuntu3_s390x.deb ... 111s Unpacking libpython3.12-minimal:s390x (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 111s Preparing to unpack .../04-python3-gi_3.48.2-1_s390x.deb ... 111s Unpacking python3-gi (3.48.2-1) over (3.48.1-1build1) ... 111s Preparing to unpack .../05-curl_8.5.0-2ubuntu10_s390x.deb ... 111s Unpacking curl (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 111s Preparing to unpack .../06-libcurl4t64_8.5.0-2ubuntu10_s390x.deb ... 111s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 111s Preparing to unpack .../07-libcurl3t64-gnutls_8.5.0-2ubuntu10_s390x.deb ... 111s Unpacking libcurl3t64-gnutls:s390x (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 111s Preparing to unpack .../08-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3_s390x.deb ... 111s Unpacking libsasl2-modules-db:s390x (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 111s Preparing to unpack .../09-libsasl2-2_2.1.28+dfsg1-5ubuntu3_s390x.deb ... 111s Unpacking libsasl2-2:s390x (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 112s Preparing to unpack .../10-libsasl2-modules_2.1.28+dfsg1-5ubuntu3_s390x.deb ... 112s Unpacking libsasl2-modules:s390x (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 112s Setting up libcurl4t64:s390x (8.5.0-2ubuntu10) ... 112s Setting up libsasl2-modules:s390x (2.1.28+dfsg1-5ubuntu3) ... 112s Setting up libpython3.12-minimal:s390x (3.12.2-5ubuntu3) ... 112s Setting up libcurl3t64-gnutls:s390x (8.5.0-2ubuntu10) ... 112s Setting up libsasl2-modules-db:s390x (2.1.28+dfsg1-5ubuntu3) ... 112s Setting up python3-gi (3.48.2-1) ... 112s Setting up libsasl2-2:s390x (2.1.28+dfsg1-5ubuntu3) ... 112s Setting up curl (8.5.0-2ubuntu10) ... 112s Setting up python3.12-minimal (3.12.2-5ubuntu3) ... 113s Setting up libpython3.12-stdlib:s390x (3.12.2-5ubuntu3) ... 113s Setting up python3.12 (3.12.2-5ubuntu3) ... 115s Processing triggers for systemd (255.4-1ubuntu7) ... 115s Processing triggers for man-db (2.12.0-4build1) ... 115s Processing triggers for debianutils (5.17build1) ... 115s Processing triggers for install-info (7.1-3build2) ... 115s Processing triggers for libc-bin (2.39-0ubuntu8) ... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 117s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 117s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 117s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 119s Reading package lists... 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 124s autopkgtest [20:01:32]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr 4 21:54:17 UTC 2024 124s autopkgtest [20:01:32]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 134s Get:1 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1.1build2 (dsc) [3286 B] 134s Get:2 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1.1build2 (tar) [153 MB] 134s Get:3 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1.1build2 (diff) [17.1 kB] 134s gpgv: Signature made Sat Mar 16 06:29:40 2024 UTC 134s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 134s gpgv: issuer "steve.langasek@ubuntu.com" 134s gpgv: Can't check signature: No public key 134s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-1.1build2.dsc: no acceptable signature found 155s autopkgtest [20:02:03]: testing package lammps version 20240207+dfsg-1.1build2 155s autopkgtest [20:02:03]: build not needed 353s autopkgtest [20:05:21]: test crack: preparing testbed 356s Reading package lists... 356s Building dependency tree... 356s Reading state information... 356s Starting pkgProblemResolver with broken count: 1 356s Starting 2 pkgProblemResolver with broken count: 1 356s Investigating (0) libevent-core-2.1-7t64:s390x < 2.1.12-stable-9ubuntu2 @ii mK Ib > 356s Broken libevent-core-2.1-7t64:s390x Breaks on libevent-core-2.1-7:s390x < none -> 2.1.12-stable-9 @un uN > (< 2.1.12-stable-9ubuntu2) 356s Considering libevent-core-2.1-7:s390x 7 as a solution to libevent-core-2.1-7t64:s390x 10 356s Added libevent-core-2.1-7:s390x to the remove list 356s Fixing libevent-core-2.1-7t64:s390x via keep of libevent-core-2.1-7:s390x 356s Investigating (0) libevent-pthreads-2.1-7:s390x < none -> 2.1.12-stable-9 @un uN Ib > 356s Broken libevent-pthreads-2.1-7:s390x Depends on libevent-core-2.1-7:s390x < none | 2.1.12-stable-9 @un uH > (= 2.1.12-stable-9) 356s Considering libevent-core-2.1-7:s390x 7 as a solution to libevent-pthreads-2.1-7:s390x 5 356s Holding Back libevent-pthreads-2.1-7:s390x rather than change libevent-core-2.1-7:s390x 356s Investigating (0) libopenmpi3t64:s390x < none -> 4.1.6-7ubuntu1 @un puN Ib > 356s Broken libopenmpi3t64:s390x Depends on libevent-pthreads-2.1-7:s390x < none | 2.1.12-stable-9 @un uH > (>= 2.1.8-stable) 356s Considering libevent-pthreads-2.1-7:s390x 5 as a solution to libopenmpi3t64:s390x 4 356s Re-Instated libevent-core-2.1-7:s390x 356s Re-Instated libevent-pthreads-2.1-7:s390x 356s Investigating (1) libevent-core-2.1-7t64:s390x < 2.1.12-stable-9ubuntu2 @ii mK Ib > 356s Broken libevent-core-2.1-7t64:s390x Breaks on libevent-core-2.1-7:s390x < none -> 2.1.12-stable-9 @un uN > (< 2.1.12-stable-9ubuntu2) 356s Considering libevent-core-2.1-7:s390x 7 as a solution to libevent-core-2.1-7t64:s390x 10 356s Added libevent-core-2.1-7:s390x to the remove list 356s Fixing libevent-core-2.1-7t64:s390x via keep of libevent-core-2.1-7:s390x 356s Investigating (1) libevent-pthreads-2.1-7:s390x < none -> 2.1.12-stable-9 @un uN Ib > 356s Broken libevent-pthreads-2.1-7:s390x Depends on libevent-core-2.1-7:s390x < none | 2.1.12-stable-9 @un uH > (= 2.1.12-stable-9) 356s Considering libevent-core-2.1-7:s390x 7 as a solution to libevent-pthreads-2.1-7:s390x 4 356s Holding Back libevent-pthreads-2.1-7:s390x rather than change libevent-core-2.1-7:s390x 356s Investigating (1) libopenmpi3t64:s390x < none -> 4.1.6-7ubuntu1 @un puN Ib > 356s Broken libopenmpi3t64:s390x Depends on libevent-pthreads-2.1-7:s390x < none | 2.1.12-stable-9 @un uH > (>= 2.1.8-stable) 356s Considering libevent-pthreads-2.1-7:s390x 4 as a solution to libopenmpi3t64:s390x 4 356s Considering libevent-pthreads-2.1-7t64:s390x 0 as a solution to libopenmpi3t64:s390x 4 356s Re-Instated libevent-pthreads-2.1-7t64:s390x 356s Done 357s The following additional packages will be installed: 357s cpp-12 gcc-12 gcc-12-base gfortran-12 lammps lammps-data libaec0 libasan8 357s libatomic1 libblas3 libcairo2 libcc1-0 libdouble-conversion3 libdrm-amdgpu1 357s libdrm-nouveau2 libdrm-radeon1 libevent-pthreads-2.1-7t64 libfabric1 357s libfftw3-double3 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 357s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 357s libglx0 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-plugins 357s libhwloc15 libisl23 libitm1 libjsoncpp25 libkim-api2 liblammps0t64 357s liblapack3 libllvm17t64 libmpc3 libmunge2 libnetcdf19t64 libogg0 libopengl0 357s libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix2t64 libpnetcdf0d 357s libproj25 libpython3.12t64 librdmacm1t64 libsz2 libtbb12 libtbbbind-2-5 357s libtbbmalloc2 libtcl8.6 libtheora0 libtk8.6 libubsan1 libvoro++1 357s libvtk9.1t64 libvulkan1 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 357s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 357s libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 357s libxss1 libxxf86vm1 mpi-default-bin ocl-icd-libopencl1 openmpi-bin 357s openmpi-common proj-data x11-common 357s Suggested packages: 357s gcc-12-locales cpp-12-doc gcc-12-multilib gcc-12-doc gfortran-12-multilib 357s gfortran-12-doc libcoarrays-dev openkim-models libfftw3-bin libfftw3-dev 357s glew-utils proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples opencl-icd gfortran 357s | fortran-compiler 357s Recommended packages: 357s lammps-doc libgl1-amber-dri mesa-vulkan-drivers | vulkan-icd 357s The following NEW packages will be installed: 357s autopkgtest-satdep cpp-12 gcc-12 gcc-12-base gfortran-12 lammps lammps-data 357s libaec0 libasan8 libatomic1 libblas3 libcairo2 libcc1-0 357s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 357s libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 libgcc-12-dev 357s libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 357s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 357s libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-plugins libhwloc15 libisl23 357s libitm1 libjsoncpp25 libkim-api2 liblammps0t64 liblapack3 libllvm17t64 357s libmpc3 libmunge2 libnetcdf19t64 libogg0 libopengl0 libopenmpi3t64 357s libpciaccess0 libpixman-1-0 libpmix2t64 libpnetcdf0d libproj25 357s libpython3.12t64 librdmacm1t64 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 357s libtcl8.6 libtheora0 libtk8.6 libubsan1 libvoro++1 libvtk9.1t64 libvulkan1 357s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 357s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 357s libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 357s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 357s x11-common 357s 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. 357s Need to get 147 MB/147 MB of archives. 357s After this operation, 613 MB of additional disk space will be used. 357s Get:1 /tmp/autopkgtest.GBYLKL/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 357s Get:2 http://ftpmaster.internal/ubuntu noble/universe s390x gcc-12-base s390x 12.3.0-17ubuntu1 [46.3 kB] 357s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 359s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 359s Get:5 http://ftpmaster.internal/ubuntu noble/universe s390x cpp-12 s390x 12.3.0-17ubuntu1 [8176 kB] 367s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240330-1ubuntu2 [49.8 kB] 367s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240330-1ubuntu2 [151 kB] 367s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240330-1ubuntu2 [31.1 kB] 367s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240330-1ubuntu2 [9386 B] 367s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240330-1ubuntu2 [2994 kB] 369s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240330-1ubuntu2 [1186 kB] 369s Get:12 http://ftpmaster.internal/ubuntu noble/universe s390x libgcc-12-dev s390x 12.3.0-17ubuntu1 [856 kB] 369s Get:13 http://ftpmaster.internal/ubuntu noble/universe s390x gcc-12 s390x 12.3.0-17ubuntu1 [16.2 MB] 372s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240330-1ubuntu2 [598 kB] 372s Get:15 http://ftpmaster.internal/ubuntu noble/universe s390x libgfortran-12-dev s390x 12.3.0-17ubuntu1 [517 kB] 372s Get:16 http://ftpmaster.internal/ubuntu noble/universe s390x gfortran-12 s390x 12.3.0-17ubuntu1 [8591 kB] 373s Get:17 http://ftpmaster.internal/ubuntu noble/universe s390x lammps-data all 20240207+dfsg-1.1build2 [9706 kB] 374s Get:18 http://ftpmaster.internal/ubuntu noble/universe s390x libaec0 s390x 1.1.2-1 [25.7 kB] 374s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 374s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 374s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 374s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 374s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 374s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-3 [589 kB] 374s Get:25 http://ftpmaster.internal/ubuntu noble/universe s390x libdouble-conversion3 s390x 3.3.0-1 [39.6 kB] 374s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-amdgpu1 s390x 2.4.120-2 [21.1 kB] 374s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-nouveau2 s390x 2.4.120-2 [18.5 kB] 374s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-radeon1 s390x 2.4.120-2 [22.7 kB] 374s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-9ubuntu2 [7954 B] 374s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x librdmacm1t64 s390x 50.0-2build2 [74.1 kB] 374s Get:31 http://ftpmaster.internal/ubuntu noble/universe s390x libfabric1 s390x 1.17.0-3build2 [566 kB] 374s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-double3 s390x 3.3.10-1ubuntu3 [512 kB] 374s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libvulkan1 s390x 1.3.275.0-1 [155 kB] 374s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libglapi-mesa s390x 24.0.3-1ubuntu4 [69.2 kB] 374s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libllvm17t64 s390x 1:17.0.6-9build3 [31.2 MB] 375s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri3-0 s390x 1.15-1 [7270 B] 375s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libgl1-mesa-dri s390x 24.0.3-1ubuntu4 [7186 kB] 376s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libglvnd0 s390x 1.7.0-1 [106 kB] 376s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libx11-xcb1 s390x 2:1.8.7-1 [7778 B] 376s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri2-0 s390x 1.15-1 [7426 B] 376s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-glx0 s390x 1.15-1 [25.8 kB] 376s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-present0 s390x 1.15-1 [5752 B] 376s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-randr0 s390x 1.15-1 [19.0 kB] 376s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-sync1 s390x 1.15-1 [9392 B] 376s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xfixes0 s390x 1.15-1 [10.5 kB] 376s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libxfixes3 s390x 1:6.0.0-2 [10.6 kB] 376s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libxshmfence1 s390x 1.3-1build4 [5334 B] 376s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libxxf86vm1 s390x 1:1.1.4-1build3 [9900 B] 376s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libglx-mesa0 s390x 24.0.3-1ubuntu4 [182 kB] 376s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libglx0 s390x 1.7.0-1 [31.4 kB] 376s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libgl1 s390x 1.7.0-1 [137 kB] 376s Get:52 http://ftpmaster.internal/ubuntu noble/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2 [40.2 kB] 376s Get:53 http://ftpmaster.internal/ubuntu noble/universe s390x libglew2.2 s390x 2.2.0-4 [202 kB] 376s Get:54 http://ftpmaster.internal/ubuntu noble/universe s390x libsz2 s390x 1.1.2-1 [5346 B] 376s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-3.1ubuntu4 [1436 kB] 376s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-3.1ubuntu4 [58.0 kB] 376s Get:57 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc15 s390x 2.10.0-1 [174 kB] 376s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libjsoncpp25 s390x 1.9.5-6 [75.5 kB] 376s Get:59 http://ftpmaster.internal/ubuntu noble/universe s390x libkim-api2 s390x 2.3.0-1 [544 kB] 376s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 376s Get:61 http://ftpmaster.internal/ubuntu noble/universe s390x libnetcdf19t64 s390x 1:4.9.2-5ubuntu4 [505 kB] 376s Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x libmunge2 s390x 0.5.15-4build1 [15.6 kB] 376s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libpciaccess0 s390x 0.17-3 [18.5 kB] 376s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 376s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1 [39.1 kB] 376s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-plugins s390x 2.10.0-1 [16.1 kB] 376s Get:67 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix2t64 s390x 5.0.1-4.1 [727 kB] 376s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi3t64 s390x 4.1.6-7ubuntu1 [2437 kB] 376s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x libpnetcdf0d s390x 1.12.3-2build1 [997 kB] 376s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12t64 s390x 3.12.2-5ubuntu3 [2511 kB] 376s Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 377s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libogg0 s390x 1.3.5-3 [22.7 kB] 377s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libopengl0 s390x 1.7.0-1 [45.9 kB] 377s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x proj-data all 9.4.0-1build2 [7885 kB] 377s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x libproj25 s390x 9.4.0-1build2 [1410 kB] 377s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x libtbbmalloc2 s390x 2021.11.0-2ubuntu2 [68.0 kB] 377s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x libtbbbind-2-5 s390x 2021.11.0-2ubuntu2 [16.7 kB] 377s Get:78 http://ftpmaster.internal/ubuntu noble/universe s390x libtbb12 s390x 2021.11.0-2ubuntu2 [118 kB] 377s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.14+dfsg-1build1 [1038 kB] 377s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libtheora0 s390x 1.1.1+dfsg.1-16.1build3 [271 kB] 377s Get:81 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 377s Get:82 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 377s Get:83 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 377s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.14-1build1 [833 kB] 377s Get:85 http://ftpmaster.internal/ubuntu noble/universe s390x libvtk9.1t64 s390x 9.1.0+really9.1.0+dfsg2-7.1build2 [22.1 MB] 378s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x liblammps0t64 s390x 20240207+dfsg-1.1build2 [7961 kB] 379s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-common all 4.1.6-7ubuntu1 [170 kB] 379s Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-bin s390x 4.1.6-7ubuntu1 [84.5 kB] 379s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x mpi-default-bin s390x 1.15 [2338 B] 379s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x lammps s390x 20240207+dfsg-1.1build2 [15.2 kB] 379s Fetched 147 MB in 22s (6802 kB/s) 379s Selecting previously unselected package gcc-12-base:s390x. 379s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78333 files and directories currently installed.) 379s Preparing to unpack .../00-gcc-12-base_12.3.0-17ubuntu1_s390x.deb ... 379s Unpacking gcc-12-base:s390x (12.3.0-17ubuntu1) ... 379s Selecting previously unselected package libisl23:s390x. 379s Preparing to unpack .../01-libisl23_0.26-3_s390x.deb ... 379s Unpacking libisl23:s390x (0.26-3) ... 379s Selecting previously unselected package libmpc3:s390x. 379s Preparing to unpack .../02-libmpc3_1.3.1-1_s390x.deb ... 379s Unpacking libmpc3:s390x (1.3.1-1) ... 379s Selecting previously unselected package cpp-12. 379s Preparing to unpack .../03-cpp-12_12.3.0-17ubuntu1_s390x.deb ... 379s Unpacking cpp-12 (12.3.0-17ubuntu1) ... 380s Selecting previously unselected package libcc1-0:s390x. 380s Preparing to unpack .../04-libcc1-0_14-20240330-1ubuntu2_s390x.deb ... 380s Unpacking libcc1-0:s390x (14-20240330-1ubuntu2) ... 380s Selecting previously unselected package libgomp1:s390x. 380s Preparing to unpack .../05-libgomp1_14-20240330-1ubuntu2_s390x.deb ... 380s Unpacking libgomp1:s390x (14-20240330-1ubuntu2) ... 380s Selecting previously unselected package libitm1:s390x. 380s Preparing to unpack .../06-libitm1_14-20240330-1ubuntu2_s390x.deb ... 380s Unpacking libitm1:s390x (14-20240330-1ubuntu2) ... 380s Selecting previously unselected package libatomic1:s390x. 380s Preparing to unpack .../07-libatomic1_14-20240330-1ubuntu2_s390x.deb ... 380s Unpacking libatomic1:s390x (14-20240330-1ubuntu2) ... 380s Selecting previously unselected package libasan8:s390x. 380s Preparing to unpack .../08-libasan8_14-20240330-1ubuntu2_s390x.deb ... 380s Unpacking libasan8:s390x (14-20240330-1ubuntu2) ... 380s Selecting previously unselected package libubsan1:s390x. 380s Preparing to unpack .../09-libubsan1_14-20240330-1ubuntu2_s390x.deb ... 380s Unpacking libubsan1:s390x (14-20240330-1ubuntu2) ... 380s Selecting previously unselected package libgcc-12-dev:s390x. 380s Preparing to unpack .../10-libgcc-12-dev_12.3.0-17ubuntu1_s390x.deb ... 380s Unpacking libgcc-12-dev:s390x (12.3.0-17ubuntu1) ... 380s Selecting previously unselected package gcc-12. 380s Preparing to unpack .../11-gcc-12_12.3.0-17ubuntu1_s390x.deb ... 380s Unpacking gcc-12 (12.3.0-17ubuntu1) ... 381s Selecting previously unselected package libgfortran5:s390x. 381s Preparing to unpack .../12-libgfortran5_14-20240330-1ubuntu2_s390x.deb ... 381s Unpacking libgfortran5:s390x (14-20240330-1ubuntu2) ... 381s Selecting previously unselected package libgfortran-12-dev:s390x. 381s Preparing to unpack .../13-libgfortran-12-dev_12.3.0-17ubuntu1_s390x.deb ... 381s Unpacking libgfortran-12-dev:s390x (12.3.0-17ubuntu1) ... 381s Selecting previously unselected package gfortran-12. 381s Preparing to unpack .../14-gfortran-12_12.3.0-17ubuntu1_s390x.deb ... 381s Unpacking gfortran-12 (12.3.0-17ubuntu1) ... 381s Selecting previously unselected package lammps-data. 381s Preparing to unpack .../15-lammps-data_20240207+dfsg-1.1build2_all.deb ... 381s Unpacking lammps-data (20240207+dfsg-1.1build2) ... 382s Selecting previously unselected package libaec0:s390x. 382s Preparing to unpack .../16-libaec0_1.1.2-1_s390x.deb ... 382s Unpacking libaec0:s390x (1.1.2-1) ... 382s Selecting previously unselected package libblas3:s390x. 382s Preparing to unpack .../17-libblas3_3.12.0-3_s390x.deb ... 382s Unpacking libblas3:s390x (3.12.0-3) ... 382s Selecting previously unselected package libpixman-1-0:s390x. 382s Preparing to unpack .../18-libpixman-1-0_0.42.2-1_s390x.deb ... 382s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 382s Selecting previously unselected package libxcb-render0:s390x. 382s Preparing to unpack .../19-libxcb-render0_1.15-1_s390x.deb ... 382s Unpacking libxcb-render0:s390x (1.15-1) ... 382s Selecting previously unselected package libxcb-shm0:s390x. 382s Preparing to unpack .../20-libxcb-shm0_1.15-1_s390x.deb ... 382s Unpacking libxcb-shm0:s390x (1.15-1) ... 382s Selecting previously unselected package libxrender1:s390x. 382s Preparing to unpack .../21-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 382s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 382s Selecting previously unselected package libcairo2:s390x. 382s Preparing to unpack .../22-libcairo2_1.18.0-3_s390x.deb ... 382s Unpacking libcairo2:s390x (1.18.0-3) ... 382s Selecting previously unselected package libdouble-conversion3:s390x. 382s Preparing to unpack .../23-libdouble-conversion3_3.3.0-1_s390x.deb ... 382s Unpacking libdouble-conversion3:s390x (3.3.0-1) ... 382s Selecting previously unselected package libdrm-amdgpu1:s390x. 382s Preparing to unpack .../24-libdrm-amdgpu1_2.4.120-2_s390x.deb ... 382s Unpacking libdrm-amdgpu1:s390x (2.4.120-2) ... 382s Selecting previously unselected package libdrm-nouveau2:s390x. 382s Preparing to unpack .../25-libdrm-nouveau2_2.4.120-2_s390x.deb ... 382s Unpacking libdrm-nouveau2:s390x (2.4.120-2) ... 382s Selecting previously unselected package libdrm-radeon1:s390x. 382s Preparing to unpack .../26-libdrm-radeon1_2.4.120-2_s390x.deb ... 382s Unpacking libdrm-radeon1:s390x (2.4.120-2) ... 382s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 382s Preparing to unpack .../27-libevent-pthreads-2.1-7t64_2.1.12-stable-9ubuntu2_s390x.deb ... 382s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-9ubuntu2) ... 382s Selecting previously unselected package librdmacm1t64:s390x. 382s Preparing to unpack .../28-librdmacm1t64_50.0-2build2_s390x.deb ... 382s Unpacking librdmacm1t64:s390x (50.0-2build2) ... 382s Selecting previously unselected package libfabric1:s390x. 382s Preparing to unpack .../29-libfabric1_1.17.0-3build2_s390x.deb ... 382s Unpacking libfabric1:s390x (1.17.0-3build2) ... 382s Selecting previously unselected package libfftw3-double3:s390x. 382s Preparing to unpack .../30-libfftw3-double3_3.3.10-1ubuntu3_s390x.deb ... 382s Unpacking libfftw3-double3:s390x (3.3.10-1ubuntu3) ... 382s Selecting previously unselected package libvulkan1:s390x. 382s Preparing to unpack .../31-libvulkan1_1.3.275.0-1_s390x.deb ... 382s Unpacking libvulkan1:s390x (1.3.275.0-1) ... 382s Selecting previously unselected package libglapi-mesa:s390x. 382s Preparing to unpack .../32-libglapi-mesa_24.0.3-1ubuntu4_s390x.deb ... 382s Unpacking libglapi-mesa:s390x (24.0.3-1ubuntu4) ... 382s Selecting previously unselected package libllvm17t64:s390x. 382s Preparing to unpack .../33-libllvm17t64_1%3a17.0.6-9build3_s390x.deb ... 382s Unpacking libllvm17t64:s390x (1:17.0.6-9build3) ... 383s Selecting previously unselected package libxcb-dri3-0:s390x. 383s Preparing to unpack .../34-libxcb-dri3-0_1.15-1_s390x.deb ... 383s Unpacking libxcb-dri3-0:s390x (1.15-1) ... 384s Selecting previously unselected package libgl1-mesa-dri:s390x. 384s Preparing to unpack .../35-libgl1-mesa-dri_24.0.3-1ubuntu4_s390x.deb ... 384s Unpacking libgl1-mesa-dri:s390x (24.0.3-1ubuntu4) ... 384s Selecting previously unselected package libglvnd0:s390x. 384s Preparing to unpack .../36-libglvnd0_1.7.0-1_s390x.deb ... 384s Unpacking libglvnd0:s390x (1.7.0-1) ... 384s Selecting previously unselected package libx11-xcb1:s390x. 384s Preparing to unpack .../37-libx11-xcb1_2%3a1.8.7-1_s390x.deb ... 384s Unpacking libx11-xcb1:s390x (2:1.8.7-1) ... 384s Selecting previously unselected package libxcb-dri2-0:s390x. 384s Preparing to unpack .../38-libxcb-dri2-0_1.15-1_s390x.deb ... 384s Unpacking libxcb-dri2-0:s390x (1.15-1) ... 384s Selecting previously unselected package libxcb-glx0:s390x. 384s Preparing to unpack .../39-libxcb-glx0_1.15-1_s390x.deb ... 384s Unpacking libxcb-glx0:s390x (1.15-1) ... 384s Selecting previously unselected package libxcb-present0:s390x. 384s Preparing to unpack .../40-libxcb-present0_1.15-1_s390x.deb ... 384s Unpacking libxcb-present0:s390x (1.15-1) ... 384s Selecting previously unselected package libxcb-randr0:s390x. 384s Preparing to unpack .../41-libxcb-randr0_1.15-1_s390x.deb ... 384s Unpacking libxcb-randr0:s390x (1.15-1) ... 384s Selecting previously unselected package libxcb-sync1:s390x. 384s Preparing to unpack .../42-libxcb-sync1_1.15-1_s390x.deb ... 384s Unpacking libxcb-sync1:s390x (1.15-1) ... 384s Selecting previously unselected package libxcb-xfixes0:s390x. 384s Preparing to unpack .../43-libxcb-xfixes0_1.15-1_s390x.deb ... 384s Unpacking libxcb-xfixes0:s390x (1.15-1) ... 384s Selecting previously unselected package libxfixes3:s390x. 384s Preparing to unpack .../44-libxfixes3_1%3a6.0.0-2_s390x.deb ... 384s Unpacking libxfixes3:s390x (1:6.0.0-2) ... 384s Selecting previously unselected package libxshmfence1:s390x. 384s Preparing to unpack .../45-libxshmfence1_1.3-1build4_s390x.deb ... 384s Unpacking libxshmfence1:s390x (1.3-1build4) ... 384s Selecting previously unselected package libxxf86vm1:s390x. 384s Preparing to unpack .../46-libxxf86vm1_1%3a1.1.4-1build3_s390x.deb ... 384s Unpacking libxxf86vm1:s390x (1:1.1.4-1build3) ... 384s Selecting previously unselected package libglx-mesa0:s390x. 384s Preparing to unpack .../47-libglx-mesa0_24.0.3-1ubuntu4_s390x.deb ... 384s Unpacking libglx-mesa0:s390x (24.0.3-1ubuntu4) ... 384s Selecting previously unselected package libglx0:s390x. 384s Preparing to unpack .../48-libglx0_1.7.0-1_s390x.deb ... 384s Unpacking libglx0:s390x (1.7.0-1) ... 384s Selecting previously unselected package libgl1:s390x. 384s Preparing to unpack .../49-libgl1_1.7.0-1_s390x.deb ... 384s Unpacking libgl1:s390x (1.7.0-1) ... 384s Selecting previously unselected package libgl2ps1.4. 384s Preparing to unpack .../50-libgl2ps1.4_1.4.2+dfsg1-2_s390x.deb ... 384s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 384s Selecting previously unselected package libglew2.2:s390x. 384s Preparing to unpack .../51-libglew2.2_2.2.0-4_s390x.deb ... 384s Unpacking libglew2.2:s390x (2.2.0-4) ... 384s Selecting previously unselected package libsz2:s390x. 384s Preparing to unpack .../52-libsz2_1.1.2-1_s390x.deb ... 384s Unpacking libsz2:s390x (1.1.2-1) ... 384s Selecting previously unselected package libhdf5-103-1t64:s390x. 384s Preparing to unpack .../53-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_s390x.deb ... 384s Unpacking libhdf5-103-1t64:s390x (1.10.10+repack-3.1ubuntu4) ... 384s Selecting previously unselected package libhdf5-hl-100t64:s390x. 384s Preparing to unpack .../54-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_s390x.deb ... 384s Unpacking libhdf5-hl-100t64:s390x (1.10.10+repack-3.1ubuntu4) ... 384s Selecting previously unselected package libhwloc15:s390x. 384s Preparing to unpack .../55-libhwloc15_2.10.0-1_s390x.deb ... 384s Unpacking libhwloc15:s390x (2.10.0-1) ... 384s Selecting previously unselected package libjsoncpp25:s390x. 384s Preparing to unpack .../56-libjsoncpp25_1.9.5-6_s390x.deb ... 384s Unpacking libjsoncpp25:s390x (1.9.5-6) ... 384s Selecting previously unselected package libkim-api2:s390x. 385s Preparing to unpack .../57-libkim-api2_2.3.0-1_s390x.deb ... 385s Unpacking libkim-api2:s390x (2.3.0-1) ... 385s Selecting previously unselected package liblapack3:s390x. 385s Preparing to unpack .../58-liblapack3_3.12.0-3_s390x.deb ... 385s Unpacking liblapack3:s390x (3.12.0-3) ... 385s Selecting previously unselected package libnetcdf19t64:s390x. 385s Preparing to unpack .../59-libnetcdf19t64_1%3a4.9.2-5ubuntu4_s390x.deb ... 385s Unpacking libnetcdf19t64:s390x (1:4.9.2-5ubuntu4) ... 385s Selecting previously unselected package libmunge2:s390x. 385s Preparing to unpack .../60-libmunge2_0.5.15-4build1_s390x.deb ... 385s Unpacking libmunge2:s390x (0.5.15-4build1) ... 385s Selecting previously unselected package libpciaccess0:s390x. 385s Preparing to unpack .../61-libpciaccess0_0.17-3_s390x.deb ... 385s Unpacking libpciaccess0:s390x (0.17-3) ... 385s Selecting previously unselected package libxnvctrl0:s390x. 385s Preparing to unpack .../62-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 385s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 385s Selecting previously unselected package ocl-icd-libopencl1:s390x. 385s Preparing to unpack .../63-ocl-icd-libopencl1_2.3.2-1_s390x.deb ... 385s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1) ... 385s Selecting previously unselected package libhwloc-plugins:s390x. 385s Preparing to unpack .../64-libhwloc-plugins_2.10.0-1_s390x.deb ... 385s Unpacking libhwloc-plugins:s390x (2.10.0-1) ... 385s Selecting previously unselected package libpmix2t64:s390x. 385s Preparing to unpack .../65-libpmix2t64_5.0.1-4.1_s390x.deb ... 385s Unpacking libpmix2t64:s390x (5.0.1-4.1) ... 385s Selecting previously unselected package libopenmpi3t64:s390x. 385s Preparing to unpack .../66-libopenmpi3t64_4.1.6-7ubuntu1_s390x.deb ... 385s Unpacking libopenmpi3t64:s390x (4.1.6-7ubuntu1) ... 385s Selecting previously unselected package libpnetcdf0d:s390x. 385s Preparing to unpack .../67-libpnetcdf0d_1.12.3-2build1_s390x.deb ... 385s Unpacking libpnetcdf0d:s390x (1.12.3-2build1) ... 385s Selecting previously unselected package libpython3.12t64:s390x. 385s Preparing to unpack .../68-libpython3.12t64_3.12.2-5ubuntu3_s390x.deb ... 385s Unpacking libpython3.12t64:s390x (3.12.2-5ubuntu3) ... 385s Selecting previously unselected package libvoro++1. 385s Preparing to unpack .../69-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 385s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 385s Selecting previously unselected package libogg0:s390x. 385s Preparing to unpack .../70-libogg0_1.3.5-3_s390x.deb ... 385s Unpacking libogg0:s390x (1.3.5-3) ... 385s Selecting previously unselected package libopengl0:s390x. 385s Preparing to unpack .../71-libopengl0_1.7.0-1_s390x.deb ... 385s Unpacking libopengl0:s390x (1.7.0-1) ... 385s Selecting previously unselected package proj-data. 385s Preparing to unpack .../72-proj-data_9.4.0-1build2_all.deb ... 385s Unpacking proj-data (9.4.0-1build2) ... 385s Selecting previously unselected package libproj25:s390x. 385s Preparing to unpack .../73-libproj25_9.4.0-1build2_s390x.deb ... 385s Unpacking libproj25:s390x (9.4.0-1build2) ... 386s Selecting previously unselected package libtbbmalloc2:s390x. 386s Preparing to unpack .../74-libtbbmalloc2_2021.11.0-2ubuntu2_s390x.deb ... 386s Unpacking libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 386s Selecting previously unselected package libtbbbind-2-5:s390x. 386s Preparing to unpack .../75-libtbbbind-2-5_2021.11.0-2ubuntu2_s390x.deb ... 386s Unpacking libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 386s Selecting previously unselected package libtbb12:s390x. 386s Preparing to unpack .../76-libtbb12_2021.11.0-2ubuntu2_s390x.deb ... 386s Unpacking libtbb12:s390x (2021.11.0-2ubuntu2) ... 386s Selecting previously unselected package libtcl8.6:s390x. 386s Preparing to unpack .../77-libtcl8.6_8.6.14+dfsg-1build1_s390x.deb ... 386s Unpacking libtcl8.6:s390x (8.6.14+dfsg-1build1) ... 386s Selecting previously unselected package libtheora0:s390x. 386s Preparing to unpack .../78-libtheora0_1.1.1+dfsg.1-16.1build3_s390x.deb ... 386s Unpacking libtheora0:s390x (1.1.1+dfsg.1-16.1build3) ... 386s Selecting previously unselected package libxft2:s390x. 386s Preparing to unpack .../79-libxft2_2.3.6-1_s390x.deb ... 386s Unpacking libxft2:s390x (2.3.6-1) ... 386s Selecting previously unselected package x11-common. 386s Preparing to unpack .../80-x11-common_1%3a7.7+23ubuntu2_all.deb ... 386s Unpacking x11-common (1:7.7+23ubuntu2) ... 386s Selecting previously unselected package libxss1:s390x. 386s Preparing to unpack .../81-libxss1_1%3a1.2.3-1build2_s390x.deb ... 386s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 386s Selecting previously unselected package libtk8.6:s390x. 386s Preparing to unpack .../82-libtk8.6_8.6.14-1build1_s390x.deb ... 386s Unpacking libtk8.6:s390x (8.6.14-1build1) ... 386s Selecting previously unselected package libvtk9.1t64:s390x. 386s Preparing to unpack .../83-libvtk9.1t64_9.1.0+really9.1.0+dfsg2-7.1build2_s390x.deb ... 386s Unpacking libvtk9.1t64:s390x (9.1.0+really9.1.0+dfsg2-7.1build2) ... 387s Selecting previously unselected package liblammps0t64:s390x. 387s Preparing to unpack .../84-liblammps0t64_20240207+dfsg-1.1build2_s390x.deb ... 387s Unpacking liblammps0t64:s390x (20240207+dfsg-1.1build2) ... 387s Selecting previously unselected package openmpi-common. 387s Preparing to unpack .../85-openmpi-common_4.1.6-7ubuntu1_all.deb ... 387s Unpacking openmpi-common (4.1.6-7ubuntu1) ... 387s Selecting previously unselected package openmpi-bin. 387s Preparing to unpack .../86-openmpi-bin_4.1.6-7ubuntu1_s390x.deb ... 387s Unpacking openmpi-bin (4.1.6-7ubuntu1) ... 387s Selecting previously unselected package mpi-default-bin. 387s Preparing to unpack .../87-mpi-default-bin_1.15_s390x.deb ... 387s Unpacking mpi-default-bin (1.15) ... 387s Selecting previously unselected package lammps. 387s Preparing to unpack .../88-lammps_20240207+dfsg-1.1build2_s390x.deb ... 387s Unpacking lammps (20240207+dfsg-1.1build2) ... 387s Selecting previously unselected package autopkgtest-satdep. 387s Preparing to unpack .../89-1-autopkgtest-satdep.deb ... 387s Unpacking autopkgtest-satdep (0) ... 387s Setting up libxcb-dri3-0:s390x (1.15-1) ... 387s Setting up libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 387s Setting up libpixman-1-0:s390x (0.42.2-1) ... 387s Setting up libx11-xcb1:s390x (2:1.8.7-1) ... 387s Setting up libpciaccess0:s390x (0.17-3) ... 387s Setting up libdouble-conversion3:s390x (3.3.0-1) ... 387s Setting up libdrm-nouveau2:s390x (2.4.120-2) ... 387s Setting up libxcb-xfixes0:s390x (1.15-1) ... 387s Setting up libogg0:s390x (1.3.5-3) ... 387s Setting up proj-data (9.4.0-1build2) ... 387s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 387s Setting up libproj25:s390x (9.4.0-1build2) ... 387s Setting up lammps-data (20240207+dfsg-1.1build2) ... 387s Setting up libxcb-render0:s390x (1.15-1) ... 387s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-9ubuntu2) ... 387s Setting up libdrm-radeon1:s390x (2.4.120-2) ... 387s Setting up libglvnd0:s390x (1.7.0-1) ... 387s Setting up libxcb-glx0:s390x (1.15-1) ... 387s Setting up x11-common (1:7.7+23ubuntu2) ... 388s Setting up libxcb-shm0:s390x (1.15-1) ... 388s Setting up libgomp1:s390x (14-20240330-1ubuntu2) ... 388s Setting up libcairo2:s390x (1.18.0-3) ... 388s Setting up libaec0:s390x (1.1.2-1) ... 388s Setting up libopengl0:s390x (1.7.0-1) ... 388s Setting up libxxf86vm1:s390x (1:1.1.4-1build3) ... 388s Setting up gcc-12-base:s390x (12.3.0-17ubuntu1) ... 388s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 388s Setting up libxcb-present0:s390x (1.15-1) ... 388s Setting up libpython3.12t64:s390x (3.12.2-5ubuntu3) ... 388s Setting up libblas3:s390x (3.12.0-3) ... 388s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 388s Setting up libmunge2:s390x (0.5.15-4build1) ... 388s Setting up libllvm17t64:s390x (1:17.0.6-9build3) ... 388s Setting up libxfixes3:s390x (1:6.0.0-2) ... 388s Setting up libxcb-sync1:s390x (1.15-1) ... 388s Setting up libhwloc15:s390x (2.10.0-1) ... 388s Setting up libmpc3:s390x (1.3.1-1) ... 388s Setting up libatomic1:s390x (14-20240330-1ubuntu2) ... 388s Setting up libtcl8.6:s390x (8.6.14+dfsg-1build1) ... 388s Setting up libjsoncpp25:s390x (1.9.5-6) ... 388s Setting up libfftw3-double3:s390x (3.3.10-1ubuntu3) ... 388s Setting up libglapi-mesa:s390x (24.0.3-1ubuntu4) ... 388s Setting up libgfortran5:s390x (14-20240330-1ubuntu2) ... 388s Setting up libvulkan1:s390x (1.3.275.0-1) ... 388s Setting up libubsan1:s390x (14-20240330-1ubuntu2) ... 388s Setting up libxcb-dri2-0:s390x (1.15-1) ... 388s Setting up ocl-icd-libopencl1:s390x (2.3.2-1) ... 388s Setting up libxshmfence1:s390x (1.3-1build4) ... 388s Setting up libxcb-randr0:s390x (1.15-1) ... 388s Setting up libasan8:s390x (14-20240330-1ubuntu2) ... 388s Setting up libtheora0:s390x (1.1.1+dfsg.1-16.1build3) ... 388s Setting up openmpi-common (4.1.6-7ubuntu1) ... 388s Setting up librdmacm1t64:s390x (50.0-2build2) ... 388s Setting up libxss1:s390x (1:1.2.3-1build2) ... 388s Setting up libisl23:s390x (0.26-3) ... 388s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 388s Setting up libcc1-0:s390x (14-20240330-1ubuntu2) ... 388s Setting up libsz2:s390x (1.1.2-1) ... 388s Setting up libitm1:s390x (14-20240330-1ubuntu2) ... 388s Setting up libdrm-amdgpu1:s390x (2.4.120-2) ... 388s Setting up libfabric1:s390x (1.17.0-3build2) ... 388s Setting up liblapack3:s390x (3.12.0-3) ... 388s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 388s Setting up libxft2:s390x (2.3.6-1) ... 388s Setting up cpp-12 (12.3.0-17ubuntu1) ... 388s Setting up libtk8.6:s390x (8.6.14-1build1) ... 388s Setting up libgl1-mesa-dri:s390x (24.0.3-1ubuntu4) ... 388s Setting up libhwloc-plugins:s390x (2.10.0-1) ... 388s Setting up libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 388s Setting up libgcc-12-dev:s390x (12.3.0-17ubuntu1) ... 388s Setting up libpmix2t64:s390x (5.0.1-4.1) ... 388s Setting up libopenmpi3t64:s390x (4.1.6-7ubuntu1) ... 388s Setting up libpnetcdf0d:s390x (1.12.3-2build1) ... 388s Setting up libhdf5-103-1t64:s390x (1.10.10+repack-3.1ubuntu4) ... 388s Setting up openmpi-bin (4.1.6-7ubuntu1) ... 388s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 388s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 388s Setting up libhdf5-hl-100t64:s390x (1.10.10+repack-3.1ubuntu4) ... 388s Setting up libnetcdf19t64:s390x (1:4.9.2-5ubuntu4) ... 388s Setting up libglx-mesa0:s390x (24.0.3-1ubuntu4) ... 388s Setting up libglx0:s390x (1.7.0-1) ... 388s Setting up mpi-default-bin (1.15) ... 388s Setting up libgfortran-12-dev:s390x (12.3.0-17ubuntu1) ... 388s Setting up libtbb12:s390x (2021.11.0-2ubuntu2) ... 388s Setting up libgl1:s390x (1.7.0-1) ... 388s Setting up gcc-12 (12.3.0-17ubuntu1) ... 388s Setting up libglew2.2:s390x (2.2.0-4) ... 388s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 388s Setting up gfortran-12 (12.3.0-17ubuntu1) ... 388s Setting up libvtk9.1t64:s390x (9.1.0+really9.1.0+dfsg2-7.1build2) ... 388s Setting up libkim-api2:s390x (2.3.0-1) ... 388s Setting up liblammps0t64:s390x (20240207+dfsg-1.1build2) ... 388s Setting up lammps (20240207+dfsg-1.1build2) ... 388s Setting up autopkgtest-satdep (0) ... 388s Processing triggers for man-db (2.12.0-4build1) ... 388s Processing triggers for libc-bin (2.39-0ubuntu8) ... 393s (Reading database ... 80472 files and directories currently installed.) 393s Removing autopkgtest-satdep (0) ... 394s autopkgtest [20:06:02]: test crack: [----------------------- 394s LAMMPS (7 Feb 2024 - Update 1) 394s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 394s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 394s using 1 OpenMP thread(s) per MPI task 394s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 394s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 394s 2 by 1 by 1 MPI processor grid 394s Created 8141 atoms 394s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 394s create_atoms CPU = 0.003 seconds 394s 302 atoms in group lower 394s 302 atoms in group upper 394s 604 atoms in group boundary 394s 7537 atoms in group mobile 394s 841 atoms in group leftupper 394s 841 atoms in group leftlower 394s Setting atom values ... 394s 841 settings made for type 394s Setting atom values ... 394s 841 settings made for type 394s Setting atom values ... 394s 302 settings made for type 394s Setting atom values ... 394s 302 settings made for type 394s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 394s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 394s Neighbor list info ... 394s update: every = 1 steps, delay = 5 steps, check = yes 394s max neighbors/atom: 2000, page size: 100000 394s master list distance cutoff = 2.8 394s ghost atom cutoff = 2.8 394s binsize = 1.4, bins = 80 56 1 394s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 394s (1) pair lj/cut, perpetual 394s attributes: half, newton on 394s pair build: half/bin/atomonly/newton 394s stencil: half/bin/2d 394s bin: standard 394s Setting up Verlet run ... 394s Unit style : lj 394s Current step : 0 394s Time step : 0.003 394s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 394s Step Temp E_pair E_mol TotEng Press Volume 394s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 395s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 395s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 396s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 396s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 397s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 398s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 398s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 399s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 399s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 400s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 400s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 401s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 402s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 402s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 403s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 403s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 404s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 405s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 405s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 406s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 406s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 407s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 407s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 408s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 409s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 409s Loop time of 14.3048 on 2 procs for 5000 steps with 8141 atoms 409s 409s Performance: 90598.904 tau/day, 349.533 timesteps/s, 2.846 Matom-step/s 409s 45.5% CPU use with 2 MPI tasks x 1 OpenMP threads 409s 409s MPI task timing breakdown: 409s Section | min time | avg time | max time |%varavg| %total 409s --------------------------------------------------------------- 409s Pair | 5.884 | 6.0021 | 6.1203 | 4.8 | 41.96 409s Neigh | 0.21108 | 0.22452 | 0.23797 | 2.8 | 1.57 409s Comm | 6.745 | 7.1895 | 7.6339 | 16.6 | 50.26 409s Output | 0.0089599 | 0.0097961 | 0.010632 | 0.8 | 0.07 409s Modify | 0.40855 | 0.42401 | 0.43947 | 2.4 | 2.96 409s Other | | 0.4549 | | | 3.18 409s 409s Nlocal: 4070.5 ave 4085 max 4056 min 409s Histogram: 1 0 0 0 0 0 0 0 0 1 409s Nghost: 207 ave 208 max 206 min 409s Histogram: 1 0 0 0 0 0 0 0 0 1 409s Neighs: 35700 ave 35927 max 35473 min 409s Histogram: 1 0 0 0 0 0 0 0 0 1 409s 409s Total # of neighbors = 71400 409s Ave neighs/atom = 8.7704213 409s Neighbor list builds = 106 409s Dangerous builds = 0 409s Total wall time: 0:00:14 409s LAMMPS (7 Feb 2024 - Update 1) 422s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 422s using 1 OpenMP thread(s) per MPI task 422s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 422s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 422s 1 by 1 by 1 MPI processor grid 422s Created 8141 atoms 422s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 422s create_atoms CPU = 0.002 seconds 422s 302 atoms in group lower 422s 302 atoms in group upper 422s 604 atoms in group boundary 422s 7537 atoms in group mobile 422s 841 atoms in group leftupper 422s 841 atoms in group leftlower 422s Setting atom values ... 422s 841 settings made for type 422s Setting atom values ... 422s 841 settings made for type 422s Setting atom values ... 422s 302 settings made for type 422s Setting atom values ... 422s 302 settings made for type 422s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 422s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 422s Neighbor list info ... 422s update: every = 1 steps, delay = 5 steps, check = yes 422s max neighbors/atom: 2000, page size: 100000 422s master list distance cutoff = 2.8 422s ghost atom cutoff = 2.8 422s binsize = 1.4, bins = 80 56 1 422s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 422s (1) pair lj/cut, perpetual 422s attributes: half, newton on 422s pair build: half/bin/atomonly/newton 422s stencil: half/bin/2d 422s bin: standard 422s Setting up Verlet run ... 422s Unit style : lj 422s Current step : 0 422s Time step : 0.003 422s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 422s Step Temp E_pair E_mol TotEng Press Volume 422s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 422s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 422s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 422s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 422s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 422s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 422s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 422s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 422s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 422s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 422s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 422s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 422s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 422s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 422s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 422s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 422s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 422s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 422s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 422s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 422s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 422s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 422s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 423s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 423s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 423s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 423s Loop time of 14.4686 on 1 procs for 5000 steps with 8141 atoms 423s 423s Performance: 89573.143 tau/day, 345.575 timesteps/s, 2.813 Matom-step/s 423s 88.2% CPU use with 1 MPI tasks x 1 OpenMP threads 423s 423s MPI task timing breakdown: 423s Section | min time | avg time | max time |%varavg| %total 423s --------------------------------------------------------------- 423s Pair | 12.689 | 12.689 | 12.689 | 0.0 | 87.70 423s Neigh | 0.40567 | 0.40567 | 0.40567 | 0.0 | 2.80 423s Comm | 0.0075608 | 0.0075608 | 0.0075608 | 0.0 | 0.05 423s Output | 0.0026622 | 0.0026622 | 0.0026622 | 0.0 | 0.02 423s Modify | 1.061 | 1.061 | 1.061 | 0.0 | 7.33 423s Other | | 0.3023 | | | 2.09 423s 423s Nlocal: 8141 ave 8141 max 8141 min 423s Histogram: 1 0 0 0 0 0 0 0 0 0 423s Nghost: 0 ave 0 max 0 min 423s Histogram: 1 0 0 0 0 0 0 0 0 0 423s Neighs: 71389 ave 71389 max 71389 min 423s Histogram: 1 0 0 0 0 0 0 0 0 0 423s 423s Total # of neighbors = 71389 423s Ave neighs/atom = 8.7690701 423s Neighbor list builds = 100 423s Dangerous builds = 0 423s Total wall time: 0:00:14 423s run: OK 424s autopkgtest [20:06:32]: test crack: -----------------------] 424s autopkgtest [20:06:32]: test crack: - - - - - - - - - - results - - - - - - - - - - 424s crack PASS 424s autopkgtest [20:06:32]: test dipole: preparing testbed 428s Reading package lists... 428s Building dependency tree... 428s Reading state information... 429s Starting pkgProblemResolver with broken count: 0 429s Starting 2 pkgProblemResolver with broken count: 0 429s Done 429s The following NEW packages will be installed: 429s autopkgtest-satdep 429s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 429s Need to get 0 B/704 B of archives. 429s After this operation, 0 B of additional disk space will be used. 429s Get:1 /tmp/autopkgtest.GBYLKL/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 429s Selecting previously unselected package autopkgtest-satdep. 430s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80472 files and directories currently installed.) 430s Preparing to unpack .../2-autopkgtest-satdep.deb ... 430s Unpacking autopkgtest-satdep (0) ... 430s Setting up autopkgtest-satdep (0) ... 432s (Reading database ... 80472 files and directories currently installed.) 432s Removing autopkgtest-satdep (0) ... 433s autopkgtest [20:06:41]: test dipole: [----------------------- 433s LAMMPS (7 Feb 2024 - Update 1) 433s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 433s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 433s using 1 OpenMP thread(s) per MPI task 433s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 433s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 433s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 433s 2 by 1 by 1 MPI processor grid 433s Created 200 atoms 433s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 433s create_atoms CPU = 0.002 seconds 433s Setting atom values ... 433s 200 settings made for mass 433s Setting atom values ... 433s 200 settings made for dipole/random 433s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 433s Neighbor list info ... 433s update: every = 1 steps, delay = 0 steps, check = yes 433s max neighbors/atom: 2000, page size: 100000 433s master list distance cutoff = 2.8 433s ghost atom cutoff = 2.8 433s binsize = 1.4, bins = 13 13 2 433s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 433s (1) pair lj/cut/dipole/cut, perpetual 433s attributes: half, newton on 433s pair build: half/bin/atomonly/newton 433s stencil: half/bin/2d 433s bin: standard 433s Setting up Verlet run ... 433s Unit style : lj 433s Current step : 0 433s Time step : 0.005 433s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 433s Step Temp E_pair c_erot TotEng Press 433s 0 0 -2.1717485 0 -2.1717485 -2.5549017 433s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 434s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 434s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 434s 2000 0.41682174 -2.8150621 0.23053133 -2.4003244 -0.12755967 434s 2500 0.42226151 -2.7992773 0.21201574 -2.3791271 -0.42717565 434s 3000 0.40912644 -2.7687377 0.19983693 -2.3616569 0.13572202 434s 3500 0.43061123 -2.7771436 0.18913682 -2.3486855 -0.68871101 434s 4000 0.47642054 -2.8606122 0.23261313 -2.3865738 -0.26385194 434s 4500 0.43856522 -2.8161061 0.23395024 -2.3797337 -0.2451526 434s 5000 0.42765477 -2.8393865 0.27394472 -2.41387 -0.2578236 434s 5500 0.46375408 -2.8523674 0.26128049 -2.3909321 -0.074469682 434s 6000 0.37810306 -2.7407945 0.24127395 -2.364582 -0.017656351 434s 6500 0.40670883 -2.7670792 0.23827482 -2.3624039 -0.4153209 434s 7000 0.43381285 -2.7910058 0.24717951 -2.359362 -0.32827324 434s 7500 0.41395656 -2.7720326 0.24704428 -2.3601459 -0.31058846 434s 8000 0.42896544 -2.7586695 0.21848971 -2.3318489 -0.24582158 435s 8500 0.4159837 -2.7285922 0.20349242 -2.3146884 -0.21727121 435s 9000 0.43247532 -2.7365389 0.19865458 -2.306226 -0.13110924 435s 9500 0.4876086 -2.785822 0.20388831 -2.3006515 -0.080937633 435s 10000 0.42948035 -2.7655989 0.23832814 -2.3382659 -0.2360635 435s Loop time of 1.3759 on 2 procs for 10000 steps with 200 atoms 435s 435s Performance: 3139761.767 tau/day, 7267.967 timesteps/s, 1.454 Matom-step/s 435s 40.7% CPU use with 2 MPI tasks x 1 OpenMP threads 435s 435s MPI task timing breakdown: 435s Section | min time | avg time | max time |%varavg| %total 435s --------------------------------------------------------------- 435s Pair | 0.36929 | 0.38352 | 0.39776 | 2.3 | 27.87 435s Neigh | 0.022689 | 0.023583 | 0.024477 | 0.6 | 1.71 435s Comm | 0.81292 | 0.83159 | 0.85026 | 2.0 | 60.44 435s Output | 0.0013978 | 0.0021016 | 0.0028054 | 1.5 | 0.15 435s Modify | 0.047354 | 0.051724 | 0.056094 | 1.9 | 3.76 435s Other | | 0.08338 | | | 6.06 435s 435s Nlocal: 100 ave 103 max 97 min 435s Histogram: 1 0 0 0 0 0 0 0 0 1 435s Nghost: 125 ave 127 max 123 min 435s Histogram: 1 0 0 0 0 0 0 0 0 1 435s Neighs: 832 ave 852 max 812 min 435s Histogram: 1 0 0 0 0 0 0 0 0 1 435s 435s Total # of neighbors = 1664 435s Ave neighs/atom = 8.32 435s Neighbor list builds = 682 435s Dangerous builds = 0 435s Total wall time: 0:00:01 435s LAMMPS (7 Feb 2024 - Update 1) 436s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 436s using 1 OpenMP thread(s) per MPI task 436s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 436s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 436s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 436s 1 by 1 by 1 MPI processor grid 436s Created 200 atoms 436s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 436s create_atoms CPU = 0.001 seconds 436s Setting atom values ... 436s 200 settings made for mass 436s Setting atom values ... 436s 200 settings made for dipole/random 436s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 436s Neighbor list info ... 436s update: every = 1 steps, delay = 0 steps, check = yes 436s max neighbors/atom: 2000, page size: 100000 436s master list distance cutoff = 2.8 436s ghost atom cutoff = 2.8 436s binsize = 1.4, bins = 13 13 2 436s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 436s (1) pair lj/cut/dipole/cut, perpetual 436s attributes: half, newton on 436s pair build: half/bin/atomonly/newton 436s stencil: half/bin/2d 436s bin: standard 436s Setting up Verlet run ... 436s Unit style : lj 436s Current step : 0 436s Time step : 0.005 436s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 436s Step Temp E_pair c_erot TotEng Press 436s 0 0 -2.1717485 0 -2.1717485 -2.5549017 436s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 436s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 436s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 436s 2000 0.41682156 -2.815062 0.23053141 -2.4003245 -0.12755875 436s 2500 0.42249692 -2.7995109 0.2120131 -2.3791265 -0.42816448 436s 3000 0.41616758 -2.7781108 0.20164728 -2.364024 -0.020886314 436s 3500 0.45899292 -2.845444 0.21311649 -2.388746 -0.27031162 436s 4000 0.44192149 -2.8102242 0.2031683 -2.3705124 -0.16716401 436s 4500 0.50397271 -2.8780965 0.21354686 -2.3766437 -0.13676854 436s 5000 0.43620945 -2.7993403 0.2117878 -2.3653119 0.13226909 436s 5500 0.42861319 -2.7809996 0.2051046 -2.3545294 -0.19042969 436s 6000 0.46841814 -2.816026 0.19950812 -2.34995 -0.41629929 436s 6500 0.41697733 -2.7700652 0.20994527 -2.3551728 -0.27762295 436s 7000 0.45187547 -2.7823572 0.20168068 -2.3327412 -0.36487435 436s 7500 0.45027947 -2.8258363 0.25315235 -2.3778082 -0.30198681 436s 8000 0.45478856 -2.8289685 0.2494063 -2.3764539 0.02766223 436s 8500 0.47491136 -2.844227 0.24174939 -2.3716901 -0.18129259 436s 9000 0.40849079 -2.7425167 0.22352464 -2.3360684 -0.0069144283 436s 9500 0.41803515 -2.7832433 0.26484963 -2.3672983 -0.036254325 436s 10000 0.43935862 -2.7528327 0.22318819 -2.3156709 -0.14674506 436s Loop time of 0.933199 on 1 procs for 10000 steps with 200 atoms 436s 436s Performance: 4629237.773 tau/day, 10715.828 timesteps/s, 2.143 Matom-step/s 436s 96.9% CPU use with 1 MPI tasks x 1 OpenMP threads 436s 436s MPI task timing breakdown: 436s Section | min time | avg time | max time |%varavg| %total 436s --------------------------------------------------------------- 436s Pair | 0.74234 | 0.74234 | 0.74234 | 0.0 | 79.55 436s Neigh | 0.045345 | 0.045345 | 0.045345 | 0.0 | 4.86 436s Comm | 0.039415 | 0.039415 | 0.039415 | 0.0 | 4.22 436s Output | 0.00035037 | 0.00035037 | 0.00035037 | 0.0 | 0.04 436s Modify | 0.088189 | 0.088189 | 0.088189 | 0.0 | 9.45 436s Other | | 0.01756 | | | 1.88 436s 436s Nlocal: 200 ave 200 max 200 min 436s Histogram: 1 0 0 0 0 0 0 0 0 0 436s Nghost: 146 ave 146 max 146 min 436s Histogram: 1 0 0 0 0 0 0 0 0 0 436s Neighs: 1639 ave 1639 max 1639 min 436s Histogram: 1 0 0 0 0 0 0 0 0 0 436s 436s Total # of neighbors = 1639 436s Ave neighs/atom = 8.195 436s Neighbor list builds = 687 436s Dangerous builds = 0 436s Total wall time: 0:00:00 436s run: OK 436s autopkgtest [20:06:44]: test dipole: -----------------------] 437s autopkgtest [20:06:45]: test dipole: - - - - - - - - - - results - - - - - - - - - - 437s dipole PASS 437s autopkgtest [20:06:45]: test ellipse: preparing testbed 439s Reading package lists... 439s Building dependency tree... 439s Reading state information... 440s Starting pkgProblemResolver with broken count: 0 440s Starting 2 pkgProblemResolver with broken count: 0 440s Done 440s The following NEW packages will be installed: 440s autopkgtest-satdep 440s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 440s Need to get 0 B/704 B of archives. 440s After this operation, 0 B of additional disk space will be used. 440s Get:1 /tmp/autopkgtest.GBYLKL/3-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 440s Selecting previously unselected package autopkgtest-satdep. 440s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80472 files and directories currently installed.) 440s Preparing to unpack .../3-autopkgtest-satdep.deb ... 440s Unpacking autopkgtest-satdep (0) ... 440s Setting up autopkgtest-satdep (0) ... 443s (Reading database ... 80472 files and directories currently installed.) 443s Removing autopkgtest-satdep (0) ... 443s autopkgtest [20:06:51]: test ellipse: [----------------------- 444s LAMMPS (7 Feb 2024 - Update 1) 444s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 444s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 444s using 1 OpenMP thread(s) per MPI task 444s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 444s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 444s 2 by 1 by 1 MPI processor grid 444s Created 400 atoms 444s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 444s create_atoms CPU = 0.001 seconds 444s Setting atom values ... 444s 48 settings made for type/fraction 444s Setting atom values ... 444s 352 settings made for mass 444s Setting atom values ... 444s 48 settings made for mass 444s Setting atom values ... 444s 352 settings made for shape 444s Setting atom values ... 444s 48 settings made for shape 444s Setting atom values ... 444s 400 settings made for quat/random 444s 352 atoms in group spheroid 444s 444s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 444s 444s Your simulation uses code contributions which should be cited: 444s - pair gayberne command: doi:10.1063/1.3058435 444s The log file lists these citations in BibTeX format. 444s 444s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 444s 444s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 444s Neighbor list info ... 444s update: every = 1 steps, delay = 0 steps, check = yes 444s max neighbors/atom: 2000, page size: 100000 444s master list distance cutoff = 4.8 444s ghost atom cutoff = 4.8 444s binsize = 2.4, bins = 59 59 3 444s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 444s (1) pair gayberne, perpetual 444s attributes: half, newton on 444s pair build: half/bin/atomonly/newton 444s stencil: half/bin/2d 444s bin: standard 444s Setting up Verlet run ... 444s Unit style : lj 444s Current step : 0 444s Time step : 0.002 444s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 444s Step c_rot E_pair TotEng Press Volume 444s 0 2.2638298 0 2.394 0.04788 20000 444s 100 1.7507088 0 1.8513745 0.036020794 20558.953 444s 200 2.2704785 0 2.401031 0.046552815 20630.598 444s 300 1.862122 0 1.969194 0.042610426 18485.56 444s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 444s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 444s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 444s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 444s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 444s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 444s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 444s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 444s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 445s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 445s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 445s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 445s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 445s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 445s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 445s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 445s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 445s Loop time of 1.54553 on 2 procs for 2000 steps with 400 atoms 445s 445s Performance: 223612.874 tau/day, 1294.056 timesteps/s, 517.622 katom-step/s 445s 43.1% CPU use with 2 MPI tasks x 1 OpenMP threads 445s 445s MPI task timing breakdown: 445s Section | min time | avg time | max time |%varavg| %total 445s --------------------------------------------------------------- 445s Pair | 0.45481 | 0.4814 | 0.50799 | 3.8 | 31.15 445s Neigh | 0.015319 | 0.015404 | 0.015488 | 0.1 | 1.00 445s Comm | 0.67527 | 0.70174 | 0.72822 | 3.2 | 45.40 445s Output | 0.037365 | 0.037503 | 0.037641 | 0.1 | 2.43 445s Modify | 0.2439 | 0.24629 | 0.24868 | 0.5 | 15.94 445s Other | | 0.06319 | | | 4.09 445s 445s Nlocal: 200 ave 227 max 173 min 445s Histogram: 1 0 0 0 0 0 0 0 0 1 445s Nghost: 204 ave 206 max 202 min 445s Histogram: 1 0 0 0 0 0 0 0 0 1 445s Neighs: 1479.5 ave 1784 max 1175 min 445s Histogram: 1 0 0 0 0 0 0 0 0 1 445s 445s Total # of neighbors = 2959 445s Ave neighs/atom = 7.3975 445s Neighbor list builds = 348 445s Dangerous builds = 0 445s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 445s Setting up Verlet run ... 445s Unit style : lj 445s Current step : 2000 445s Time step : 0.002 445s Per MPI rank memory allocation (min/avg/max) = 6.9 | 6.9 | 6.9 Mbytes 445s Step c_rot E_pair TotEng Press Volume 445s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 445s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 445s 2200 1.9590367 -3.3182662 -1.3678333 0.35910433 1149.0282 446s 2300 2.0250309 -3.3891121 -1.3644964 0.46285769 1149.0282 446s 2400 2.085533 -3.4551199 -1.3401904 0.61189864 1149.0282 446s 2500 2.077574 -3.4482359 -1.3340251 1.0190852 1149.0282 446s 2600 2.0840722 -3.4558292 -1.3514352 0.7597702 1149.0282 446s 2700 2.1174248 -3.4915978 -1.3720622 0.82088405 1149.0282 446s 2800 2.0120484 -3.3803498 -1.3351386 1.0472272 1149.0282 446s 2900 2.095772 -3.4692917 -1.3762115 0.6503267 1149.0282 446s 3000 2.005185 -3.3743963 -1.3771538 0.74858505 1149.0282 446s 3100 2.0635196 -3.4375558 -1.3792354 0.72379626 1149.0282 446s 3200 2.0131468 -3.3825952 -1.3703433 1.1087307 1149.0282 446s 3300 2.0467878 -3.4185419 -1.3532024 0.7400243 1149.0282 447s 3400 1.9629403 -3.328306 -1.3871127 0.78865882 1149.0282 447s 3500 2.0576813 -3.4288036 -1.3361687 0.72305492 1149.0282 447s 3600 1.9638286 -3.3256476 -1.3663274 0.83792378 1149.0282 448s 3700 1.9900562 -3.3535764 -1.3259922 0.4389563 1149.0282 448s 3800 1.9016735 -3.2598525 -1.3493967 0.56256005 1149.0282 448s 3900 2.002131 -3.3658151 -1.3768647 0.59924524 1149.0282 448s 4000 1.9750784 -3.33731 -1.3724406 0.70702486 1149.0282 448s Loop time of 1.9535 on 2 procs for 2000 steps with 400 atoms 448s 448s Performance: 176913.618 tau/day, 1023.806 timesteps/s, 409.522 katom-step/s 448s 38.1% CPU use with 2 MPI tasks x 1 OpenMP threads 448s 448s MPI task timing breakdown: 448s Section | min time | avg time | max time |%varavg| %total 448s --------------------------------------------------------------- 448s Pair | 0.45793 | 0.60464 | 0.75134 | 18.9 | 30.95 448s Neigh | 0.0033643 | 0.0046952 | 0.0060261 | 1.9 | 0.24 448s Comm | 0.95613 | 1.1245 | 1.293 | 15.9 | 57.57 448s Output | 0.054273 | 0.054898 | 0.055524 | 0.3 | 2.81 448s Modify | 0.067502 | 0.086475 | 0.10545 | 6.5 | 4.43 448s Other | | 0.07825 | | | 4.01 448s 448s Nlocal: 200 ave 242 max 158 min 448s Histogram: 1 0 0 0 0 0 0 0 0 1 448s Nghost: 186 ave 206 max 166 min 448s Histogram: 1 0 0 0 0 0 0 0 0 1 448s Neighs: 1548.5 ave 2045 max 1052 min 448s Histogram: 1 0 0 0 0 0 0 0 0 1 448s 448s Total # of neighbors = 3097 448s Ave neighs/atom = 7.7425 448s Neighbor list builds = 48 448s Dangerous builds = 0 448s Total wall time: 0:00:03 448s LAMMPS (7 Feb 2024 - Update 1) 449s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 449s using 1 OpenMP thread(s) per MPI task 449s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 449s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 449s 1 by 1 by 1 MPI processor grid 449s Created 400 atoms 449s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 449s create_atoms CPU = 0.001 seconds 449s Setting atom values ... 449s 48 settings made for type/fraction 449s Setting atom values ... 449s 352 settings made for mass 449s Setting atom values ... 449s 48 settings made for mass 449s Setting atom values ... 449s 352 settings made for shape 449s Setting atom values ... 449s 48 settings made for shape 449s Setting atom values ... 449s 400 settings made for quat/random 449s 352 atoms in group spheroid 449s 449s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 449s 449s Your simulation uses code contributions which should be cited: 449s - pair gayberne command: doi:10.1063/1.3058435 449s The log file lists these citations in BibTeX format. 449s 449s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 449s 449s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 449s Neighbor list info ... 449s update: every = 1 steps, delay = 0 steps, check = yes 449s max neighbors/atom: 2000, page size: 100000 449s master list distance cutoff = 4.8 449s ghost atom cutoff = 4.8 449s binsize = 2.4, bins = 59 59 3 449s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 449s (1) pair gayberne, perpetual 449s attributes: half, newton on 449s pair build: half/bin/atomonly/newton 449s stencil: half/bin/2d 449s bin: standard 449s Setting up Verlet run ... 449s Unit style : lj 449s Current step : 0 449s Time step : 0.002 449s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 449s Step c_rot E_pair TotEng Press Volume 449s 0 2.2638298 0 2.394 0.04788 20000 449s 100 1.7507088 0 1.8513745 0.036020794 20558.953 449s 200 2.2704785 0 2.401031 0.046552815 20630.598 449s 300 1.862122 0 1.969194 0.042610426 18485.56 449s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 449s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 449s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 449s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 449s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 449s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 449s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 449s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 449s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 449s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 449s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 449s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 449s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 449s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 449s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 449s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 449s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 449s Loop time of 1.25283 on 1 procs for 2000 steps with 400 atoms 449s 449s Performance: 275855.277 tau/day, 1596.385 timesteps/s, 638.554 katom-step/s 449s 96.9% CPU use with 1 MPI tasks x 1 OpenMP threads 449s 449s MPI task timing breakdown: 449s Section | min time | avg time | max time |%varavg| %total 449s --------------------------------------------------------------- 449s Pair | 0.91685 | 0.91685 | 0.91685 | 0.0 | 73.18 450s Neigh | 0.030928 | 0.030928 | 0.030928 | 0.0 | 2.47 450s Comm | 0.015129 | 0.015129 | 0.015129 | 0.0 | 1.21 450s Output | 0.028476 | 0.028476 | 0.028476 | 0.0 | 2.27 450s Modify | 0.25329 | 0.25329 | 0.25329 | 0.0 | 20.22 450s Other | | 0.008156 | | | 0.65 450s 450s Nlocal: 400 ave 400 max 400 min 450s Histogram: 1 0 0 0 0 0 0 0 0 0 450s Nghost: 255 ave 255 max 255 min 450s Histogram: 1 0 0 0 0 0 0 0 0 0 450s Neighs: 2959 ave 2959 max 2959 min 450s Histogram: 1 0 0 0 0 0 0 0 0 0 450s 450s Total # of neighbors = 2959 450s Ave neighs/atom = 7.3975 450s Neighbor list builds = 348 450s Dangerous builds = 0 450s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 450s Setting up Verlet run ... 450s Unit style : lj 450s Current step : 2000 450s Time step : 0.002 450s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 450s Step c_rot E_pair TotEng Press Volume 450s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 450s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 450s 2200 1.9590368 -3.3182663 -1.3678333 0.35910425 1149.0282 450s 2300 2.0250308 -3.3891119 -1.3644964 0.46285779 1149.0282 450s 2400 2.0855331 -3.45512 -1.3401904 0.61189841 1149.0282 450s 2500 2.0775737 -3.4482356 -1.3340258 1.0190836 1149.0282 450s 2600 2.084072 -3.4558289 -1.3514359 0.75976918 1149.0282 450s 2700 2.1174308 -3.4916046 -1.3720664 0.82086811 1149.0282 450s 2800 2.0120441 -3.3803491 -1.3351469 1.047208 1149.0282 450s 2900 2.0957766 -3.4692999 -1.376208 0.65043335 1149.0282 450s 3000 2.00512 -3.3743288 -1.3771585 0.7487656 1149.0282 450s 3100 2.0635277 -3.4376031 -1.3792202 0.72375619 1149.0282 450s 3200 2.0130716 -3.3825107 -1.3702334 1.1098674 1149.0282 450s 3300 2.0463568 -3.4179583 -1.3534773 0.73871011 1149.0282 450s 3400 1.9649348 -3.3304023 -1.3860539 0.77548498 1149.0282 450s 3500 2.0501941 -3.4213612 -1.3373407 0.73278199 1149.0282 450s 3600 1.9881829 -3.3519947 -1.3795107 0.73402726 1149.0282 450s 3700 1.9994085 -3.3655341 -1.3599281 0.3911747 1149.0282 450s 3800 1.963869 -3.3264036 -1.3599099 0.50519594 1149.0282 450s 3900 1.9970107 -3.3624111 -1.3743885 1.0960718 1149.0282 450s 4000 2.0620245 -3.4315752 -1.3998675 0.54966642 1149.0282 450s Loop time of 1.35565 on 1 procs for 2000 steps with 400 atoms 450s 450s Performance: 254932.219 tau/day, 1475.302 timesteps/s, 590.121 katom-step/s 450s 97.0% CPU use with 1 MPI tasks x 1 OpenMP threads 450s 450s MPI task timing breakdown: 450s Section | min time | avg time | max time |%varavg| %total 450s --------------------------------------------------------------- 450s Pair | 1.1388 | 1.1388 | 1.1388 | 0.0 | 84.00 450s Neigh | 0.0077792 | 0.0077792 | 0.0077792 | 0.0 | 0.57 450s Comm | 0.016019 | 0.016019 | 0.016019 | 0.0 | 1.18 450s Output | 0.028938 | 0.028938 | 0.028938 | 0.0 | 2.13 450s Modify | 0.15628 | 0.15628 | 0.15628 | 0.0 | 11.53 450s Other | | 0.007859 | | | 0.58 450s 450s Nlocal: 400 ave 400 max 400 min 450s Histogram: 1 0 0 0 0 0 0 0 0 0 450s Nghost: 240 ave 240 max 240 min 450s Histogram: 1 0 0 0 0 0 0 0 0 0 450s Neighs: 3096 ave 3096 max 3096 min 450s Histogram: 1 0 0 0 0 0 0 0 0 0 450s 450s Total # of neighbors = 3096 450s Ave neighs/atom = 7.74 450s Neighbor list builds = 49 450s Dangerous builds = 0 450s Total wall time: 0:00:02 450s LAMMPS (7 Feb 2024 - Update 1) 450s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 450s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 450s using 1 OpenMP thread(s) per MPI task 450s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 450s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 450s 2 by 1 by 1 MPI processor grid 450s Created 400 atoms 450s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 450s create_atoms CPU = 0.001 seconds 450s Setting atom values ... 450s 48 settings made for type/fraction 450s Setting atom values ... 450s 352 settings made for mass 450s Setting atom values ... 450s 48 settings made for mass 450s Setting atom values ... 450s 352 settings made for shape 450s Setting atom values ... 450s 48 settings made for shape 450s Setting atom values ... 450s 400 settings made for quat/random 450s 352 atoms in group spheroid 450s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 450s Neighbor list info ... 450s update: every = 1 steps, delay = 0 steps, check = yes 450s max neighbors/atom: 2000, page size: 100000 450s master list distance cutoff = 4.8 450s ghost atom cutoff = 4.8 450s binsize = 2.4, bins = 59 59 3 450s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 450s (1) pair resquared, perpetual 450s attributes: half, newton on 450s pair build: half/bin/atomonly/newton 450s stencil: half/bin/2d 450s bin: standard 450s Setting up Verlet run ... 450s Unit style : lj 450s Current step : 0 450s Time step : 0.002 450s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 450s Step c_rot E_pair TotEng Press Volume 450s 0 2.2638298 0 2.394 0.04788 20000 450s 100 1.7507088 0 1.8513745 0.036020794 20558.953 450s 200 2.2704785 0 2.401031 0.046552815 20630.598 450s 300 1.862122 0 1.969194 0.042610426 18485.56 450s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 450s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 450s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 450s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 451s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 451s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 451s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 451s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 451s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 454s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 454s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 454s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 454s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 454s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 454s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 454s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 454s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 454s Loop time of 2.40599 on 2 procs for 2000 steps with 400 atoms 454s 454s Performance: 143641.491 tau/day, 831.259 timesteps/s, 332.503 katom-step/s 454s 42.9% CPU use with 2 MPI tasks x 1 OpenMP threads 454s 454s MPI task timing breakdown: 454s Section | min time | avg time | max time |%varavg| %total 454s --------------------------------------------------------------- 454s Pair | 0.86055 | 0.87093 | 0.88131 | 1.1 | 36.20 454s Neigh | 0.016812 | 0.01697 | 0.017129 | 0.1 | 0.71 454s Comm | 1.1282 | 1.1376 | 1.1469 | 0.9 | 47.28 454s Output | 0.040918 | 0.041124 | 0.04133 | 0.1 | 1.71 454s Modify | 0.26703 | 0.26754 | 0.26804 | 0.1 | 11.12 454s Other | | 0.07187 | | | 2.99 454s 454s Nlocal: 200 ave 206 max 194 min 454s Histogram: 1 0 0 0 0 0 0 0 0 1 454s Nghost: 166 ave 172 max 160 min 454s Histogram: 1 0 0 0 0 0 0 0 0 1 454s Neighs: 990.5 ave 1028 max 953 min 454s Histogram: 1 0 0 0 0 0 0 0 0 1 454s 454s Total # of neighbors = 1981 454s Ave neighs/atom = 4.9525 454s Neighbor list builds = 410 454s Dangerous builds = 0 454s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 454s Setting up Verlet run ... 454s Unit style : lj 454s Current step : 2000 454s Time step : 0.002 454s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 454s Step c_rot E_pair TotEng Press Volume 454s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 454s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 454s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 454s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 454s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 454s 2500 2.1396456 0.25118294 2.3450649 1.7231479 1625.5704 454s 2600 2.1724989 0.21652796 2.36624 1.5785682 1625.5704 454s 2700 2.1347133 0.2565462 2.3819962 1.7939756 1625.5704 454s 2800 2.2187273 0.16767707 2.3890091 1.3803388 1625.5704 455s 2900 2.2653117 0.11841424 2.358481 1.1423479 1625.5704 455s 3000 2.1965681 0.19125616 2.3687823 1.55014 1625.5704 455s 3100 2.1970501 0.19052613 2.3694703 1.4706426 1625.5704 455s 3200 2.1661439 0.22324214 2.3939177 1.619691 1625.5704 455s 3300 2.1298288 0.26157991 2.3997036 1.8700501 1625.5704 456s 3400 2.1293647 0.26220526 2.373699 1.7332686 1625.5704 456s 3500 2.1835494 0.20483304 2.4031724 1.5471088 1625.5704 456s 3600 2.1875445 0.20049079 2.4159533 1.5995253 1625.5704 456s 3700 2.1186666 0.27351639 2.4141913 1.9057949 1625.5704 456s 3800 2.1752149 0.2136072 2.3067948 1.5705518 1625.5704 457s 3900 2.1976482 0.18993383 2.4017837 1.4844827 1625.5704 457s 4000 2.1788977 0.20960933 2.3437572 1.576965 1625.5704 457s Loop time of 4.09287 on 2 procs for 2000 steps with 400 atoms 457s 457s Performance: 84439.503 tau/day, 488.655 timesteps/s, 195.462 katom-step/s 457s 44.5% CPU use with 2 MPI tasks x 1 OpenMP threads 457s 457s MPI task timing breakdown: 457s Section | min time | avg time | max time |%varavg| %total 457s --------------------------------------------------------------- 457s Pair | 1.7093 | 1.7694 | 1.8294 | 4.5 | 43.23 457s Neigh | 0.0032317 | 0.003412 | 0.0035923 | 0.3 | 0.08 457s Comm | 2.0438 | 2.1091 | 2.1743 | 4.5 | 51.53 457s Output | 0.047461 | 0.047944 | 0.048427 | 0.2 | 1.17 457s Modify | 0.082898 | 0.087466 | 0.092034 | 1.5 | 2.14 457s Other | | 0.07564 | | | 1.85 457s 457s Nlocal: 200 ave 207 max 193 min 457s Histogram: 1 0 0 0 0 0 0 0 0 1 457s Nghost: 162.5 ave 165 max 160 min 457s Histogram: 1 0 0 0 0 0 0 0 0 1 457s Neighs: 966 ave 1009 max 923 min 457s Histogram: 1 0 0 0 0 0 0 0 0 1 457s 457s Total # of neighbors = 1932 457s Ave neighs/atom = 4.83 457s Neighbor list builds = 50 457s Dangerous builds = 0 457s Total wall time: 0:00:06 457s LAMMPS (7 Feb 2024 - Update 1) 459s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 459s using 1 OpenMP thread(s) per MPI task 459s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 459s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 459s 1 by 1 by 1 MPI processor grid 459s Created 400 atoms 459s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 459s create_atoms CPU = 0.001 seconds 459s Setting atom values ... 459s 48 settings made for type/fraction 459s Setting atom values ... 459s 352 settings made for mass 459s Setting atom values ... 459s 48 settings made for mass 459s Setting atom values ... 459s 352 settings made for shape 459s Setting atom values ... 459s 48 settings made for shape 459s Setting atom values ... 459s 400 settings made for quat/random 459s 352 atoms in group spheroid 459s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 459s Neighbor list info ... 459s update: every = 1 steps, delay = 0 steps, check = yes 459s max neighbors/atom: 2000, page size: 100000 459s master list distance cutoff = 4.8 459s ghost atom cutoff = 4.8 459s binsize = 2.4, bins = 59 59 3 459s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 459s (1) pair resquared, perpetual 459s attributes: half, newton on 459s pair build: half/bin/atomonly/newton 459s stencil: half/bin/2d 459s bin: standard 459s Setting up Verlet run ... 459s Unit style : lj 459s Current step : 0 459s Time step : 0.002 459s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 459s Step c_rot E_pair TotEng Press Volume 459s 0 2.2638298 0 2.394 0.04788 20000 459s 100 1.7507088 0 1.8513745 0.036020794 20558.953 459s 200 2.2704785 0 2.401031 0.046552815 20630.598 459s 300 1.862122 0 1.969194 0.042610426 18485.56 459s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 459s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 459s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 459s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 459s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 459s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 459s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 459s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 459s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 459s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 459s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 459s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 459s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 459s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 459s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 459s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 459s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 459s Loop time of 1.99376 on 1 procs for 2000 steps with 400 atoms 459s 459s Performance: 173341.006 tau/day, 1003.131 timesteps/s, 401.252 katom-step/s 459s 98.2% CPU use with 1 MPI tasks x 1 OpenMP threads 459s 459s MPI task timing breakdown: 459s Section | min time | avg time | max time |%varavg| %total 459s --------------------------------------------------------------- 459s Pair | 1.662 | 1.662 | 1.662 | 0.0 | 83.36 459s Neigh | 0.032454 | 0.032454 | 0.032454 | 0.0 | 1.63 459s Comm | 0.01261 | 0.01261 | 0.01261 | 0.0 | 0.63 459s Output | 0.028974 | 0.028974 | 0.028974 | 0.0 | 1.45 459s Modify | 0.24938 | 0.24938 | 0.24938 | 0.0 | 12.51 462s Other | | 0.008363 | | | 0.42 462s 462s Nlocal: 400 ave 400 max 400 min 462s Histogram: 1 0 0 0 0 0 0 0 0 0 462s Nghost: 214 ave 214 max 214 min 462s Histogram: 1 0 0 0 0 0 0 0 0 0 462s Neighs: 1981 ave 1981 max 1981 min 462s Histogram: 1 0 0 0 0 0 0 0 0 0 462s 462s Total # of neighbors = 1981 462s Ave neighs/atom = 4.9525 462s Neighbor list builds = 410 462s Dangerous builds = 0 462s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 462s Setting up Verlet run ... 462s Unit style : lj 462s Current step : 2000 462s Time step : 0.002 462s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 462s Step c_rot E_pair TotEng Press Volume 462s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 462s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 462s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 462s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 462s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 462s 2500 2.1396456 0.25118295 2.3450649 1.7231479 1625.5704 462s 2600 2.1724989 0.21652796 2.3662399 1.5785682 1625.5704 462s 2700 2.1347133 0.25654622 2.3819962 1.7939757 1625.5704 462s 2800 2.2187273 0.16767709 2.3890091 1.3803389 1625.5704 462s 2900 2.2653117 0.1184142 2.3584809 1.1423477 1625.5704 462s 3000 2.1965682 0.19125607 2.3687823 1.5501394 1625.5704 462s 3100 2.1970503 0.19052592 2.3694702 1.4706415 1625.5704 462s 3200 2.1661438 0.22324217 2.393918 1.619691 1625.5704 462s 3300 2.1298268 0.26158212 2.3997056 1.8700704 1625.5704 462s 3400 2.129366 0.26220387 2.3736989 1.7332623 1625.5704 462s 3500 2.1835467 0.20483593 2.4031735 1.5471227 1625.5704 462s 3600 2.187532 0.20050401 2.4159602 1.5996363 1625.5704 462s 3700 2.1186808 0.2735013 2.4141937 1.9057216 1625.5704 462s 3800 2.1752481 0.21357202 2.3067618 1.5703983 1625.5704 462s 3900 2.1976728 0.18990792 2.4017814 1.4843601 1625.5704 462s 4000 2.1786303 0.20989248 2.3438733 1.578595 1625.5704 462s Loop time of 3.54867 on 1 procs for 2000 steps with 400 atoms 462s 462s Performance: 97388.566 tau/day, 563.591 timesteps/s, 225.436 katom-step/s 462s 95.4% CPU use with 1 MPI tasks x 1 OpenMP threads 462s 462s MPI task timing breakdown: 462s Section | min time | avg time | max time |%varavg| %total 462s --------------------------------------------------------------- 462s Pair | 3.3229 | 3.3229 | 3.3229 | 0.0 | 93.64 462s Neigh | 0.0063301 | 0.0063301 | 0.0063301 | 0.0 | 0.18 462s Comm | 0.016669 | 0.016669 | 0.016669 | 0.0 | 0.47 462s Output | 0.029151 | 0.029151 | 0.029151 | 0.0 | 0.82 462s Modify | 0.16386 | 0.16386 | 0.16386 | 0.0 | 4.62 462s Other | | 0.00975 | | | 0.27 462s 462s Nlocal: 400 ave 400 max 400 min 462s Histogram: 1 0 0 0 0 0 0 0 0 0 462s Nghost: 208 ave 208 max 208 min 462s Histogram: 1 0 0 0 0 0 0 0 0 0 462s Neighs: 1932 ave 1932 max 1932 min 462s Histogram: 1 0 0 0 0 0 0 0 0 0 462s 462s Total # of neighbors = 1932 462s Ave neighs/atom = 4.83 462s Neighbor list builds = 50 462s Dangerous builds = 0 462s Total wall time: 0:00:05 462s run: OK 463s autopkgtest [20:07:11]: test ellipse: -----------------------] 463s autopkgtest [20:07:11]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 463s ellipse PASS 464s autopkgtest [20:07:12]: test flow: preparing testbed 468s Reading package lists... 468s Building dependency tree... 468s Reading state information... 468s Starting pkgProblemResolver with broken count: 0 468s Starting 2 pkgProblemResolver with broken count: 0 468s Done 468s The following NEW packages will be installed: 468s autopkgtest-satdep 468s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 468s Need to get 0 B/704 B of archives. 468s After this operation, 0 B of additional disk space will be used. 468s Get:1 /tmp/autopkgtest.GBYLKL/4-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 469s Selecting previously unselected package autopkgtest-satdep. 469s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80472 files and directories currently installed.) 469s Preparing to unpack .../4-autopkgtest-satdep.deb ... 469s Unpacking autopkgtest-satdep (0) ... 469s Setting up autopkgtest-satdep (0) ... 471s (Reading database ... 80472 files and directories currently installed.) 471s Removing autopkgtest-satdep (0) ... 472s autopkgtest [20:07:20]: test flow: [----------------------- 472s LAMMPS (7 Feb 2024 - Update 1) 472s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 472s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 472s using 1 OpenMP thread(s) per MPI task 472s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 472s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 472s 2 by 1 by 1 MPI processor grid 472s Created 420 atoms 472s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 472s create_atoms CPU = 0.001 seconds 472s 60 atoms in group lower 472s 60 atoms in group upper 472s 120 atoms in group boundary 472s 300 atoms in group flow 472s Setting atom values ... 472s 60 settings made for type 472s Setting atom values ... 472s 60 settings made for type 472s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 472s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 472s Neighbor list info ... 472s update: every = 1 steps, delay = 5 steps, check = yes 472s max neighbors/atom: 2000, page size: 100000 472s master list distance cutoff = 1.42246 472s ghost atom cutoff = 1.42246 472s binsize = 0.71123, bins = 37 32 1 472s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 472s (1) pair lj/cut, perpetual 472s attributes: half, newton on 472s pair build: half/bin/atomonly/newton 472s stencil: half/bin/2d 472s bin: standard 472s Setting up Verlet run ... 472s Unit style : lj 472s Current step : 0 472s Time step : 0.003 472s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 472s Step Temp E_pair E_mol TotEng Press Volume 472s 0 1 0 0 0.71190476 0.52314537 571.54286 472s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 472s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 472s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 472s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 472s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 472s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 472s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 472s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 472s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 473s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 473s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 473s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 473s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 473s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 473s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 473s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 473s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 473s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 473s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 473s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 473s Loop time of 0.673334 on 2 procs for 10000 steps with 420 atoms 473s 473s Performance: 3849501.511 tau/day, 14851.472 timesteps/s, 6.238 Matom-step/s 473s 36.1% CPU use with 2 MPI tasks x 1 OpenMP threads 473s 473s MPI task timing breakdown: 473s Section | min time | avg time | max time |%varavg| %total 473s --------------------------------------------------------------- 473s Pair | 0.092061 | 0.092438 | 0.092816 | 0.1 | 13.73 473s Neigh | 0.03917 | 0.039414 | 0.039658 | 0.1 | 5.85 473s Comm | 0.43028 | 0.4308 | 0.43132 | 0.1 | 63.98 473s Output | 0.0014726 | 0.0018964 | 0.0023202 | 1.0 | 0.28 473s Modify | 0.043272 | 0.043522 | 0.043771 | 0.1 | 6.46 473s Other | | 0.06526 | | | 9.69 473s 473s Nlocal: 210 ave 214 max 206 min 473s Histogram: 1 0 0 0 0 0 0 0 0 1 473s Nghost: 51 ave 52 max 50 min 473s Histogram: 1 0 0 0 0 0 0 0 0 1 473s Neighs: 472 ave 494 max 450 min 473s Histogram: 1 0 0 0 0 0 0 0 0 1 473s 473s Total # of neighbors = 944 473s Ave neighs/atom = 2.247619 473s Neighbor list builds = 994 473s Dangerous builds = 0 473s Total wall time: 0:00:00 473s LAMMPS (7 Feb 2024 - Update 1) 473s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 473s using 1 OpenMP thread(s) per MPI task 473s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 473s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 473s 1 by 1 by 1 MPI processor grid 473s Created 420 atoms 473s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 473s create_atoms CPU = 0.000 seconds 473s 60 atoms in group lower 473s 60 atoms in group upper 473s 120 atoms in group boundary 473s 300 atoms in group flow 473s Setting atom values ... 473s 60 settings made for type 473s Setting atom values ... 473s 60 settings made for type 473s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 473s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 473s Neighbor list info ... 473s update: every = 1 steps, delay = 5 steps, check = yes 473s max neighbors/atom: 2000, page size: 100000 473s master list distance cutoff = 1.42246 473s ghost atom cutoff = 1.42246 473s binsize = 0.71123, bins = 37 32 1 473s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 473s (1) pair lj/cut, perpetual 473s attributes: half, newton on 473s pair build: half/bin/atomonly/newton 473s stencil: half/bin/2d 473s bin: standard 473s Setting up Verlet run ... 473s Unit style : lj 473s Current step : 0 473s Time step : 0.003 473s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 473s Step Temp E_pair E_mol TotEng Press Volume 473s 0 1 0 0 0.71190476 0.52314537 571.54286 473s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 473s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 473s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 473s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 473s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 473s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 473s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 473s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 473s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 473s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 473s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 473s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 473s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 473s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 473s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 473s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 473s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 473s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 473s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 473s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 473s Loop time of 0.306203 on 1 procs for 10000 steps with 420 atoms 473s 473s Performance: 8464967.856 tau/day, 32658.055 timesteps/s, 13.716 Matom-step/s 473s 97.4% CPU use with 1 MPI tasks x 1 OpenMP threads 473s 473s MPI task timing breakdown: 473s Section | min time | avg time | max time |%varavg| %total 473s --------------------------------------------------------------- 473s Pair | 0.16029 | 0.16029 | 0.16029 | 0.0 | 52.35 473s Neigh | 0.061568 | 0.061568 | 0.061568 | 0.0 | 20.11 473s Comm | 0.0066717 | 0.0066717 | 0.0066717 | 0.0 | 2.18 473s Output | 0.00035837 | 0.00035837 | 0.00035837 | 0.0 | 0.12 473s Modify | 0.062395 | 0.062395 | 0.062395 | 0.0 | 20.38 473s Other | | 0.01492 | | | 4.87 473s 473s Nlocal: 420 ave 420 max 420 min 473s Histogram: 1 0 0 0 0 0 0 0 0 0 473s Nghost: 50 ave 50 max 50 min 473s Histogram: 1 0 0 0 0 0 0 0 0 0 473s Neighs: 946 ave 946 max 946 min 473s Histogram: 1 0 0 0 0 0 0 0 0 0 473s 473s Total # of neighbors = 946 473s Ave neighs/atom = 2.252381 473s Neighbor list builds = 979 473s Dangerous builds = 0 473s Total wall time: 0:00:00 473s LAMMPS (7 Feb 2024 - Update 1) 473s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 473s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 473s using 1 OpenMP thread(s) per MPI task 473s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 473s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 473s 2 by 1 by 1 MPI processor grid 473s Created 420 atoms 473s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 473s create_atoms CPU = 0.001 seconds 473s 60 atoms in group lower 473s 60 atoms in group upper 473s 120 atoms in group boundary 473s 300 atoms in group flow 473s Setting atom values ... 473s 60 settings made for type 473s Setting atom values ... 473s 60 settings made for type 473s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 473s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 473s Neighbor list info ... 473s update: every = 1 steps, delay = 5 steps, check = yes 473s max neighbors/atom: 2000, page size: 100000 473s master list distance cutoff = 1.42246 473s ghost atom cutoff = 1.42246 473s binsize = 0.71123, bins = 37 32 1 473s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 473s (1) pair lj/cut, perpetual 473s attributes: half, newton on 473s pair build: half/bin/atomonly/newton 473s stencil: half/bin/2d 473s bin: standard 473s Setting up Verlet run ... 473s Unit style : lj 473s Current step : 0 473s Time step : 0.003 473s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 474s Step Temp E_pair E_mol TotEng Press Volume 474s 0 1 0 0 0.71190476 0.52314537 571.54286 474s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 474s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 474s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 474s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 474s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 474s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 474s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 474s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 474s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 474s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 474s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 474s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 474s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 474s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 474s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 474s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 474s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 474s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 474s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 474s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 474s Loop time of 0.607476 on 2 procs for 10000 steps with 420 atoms 474s 474s Performance: 4266837.691 tau/day, 16461.565 timesteps/s, 6.914 Matom-step/s 474s 38.0% CPU use with 2 MPI tasks x 1 OpenMP threads 474s 474s MPI task timing breakdown: 474s Section | min time | avg time | max time |%varavg| %total 474s --------------------------------------------------------------- 474s Pair | 0.092273 | 0.092574 | 0.092876 | 0.1 | 15.24 474s Neigh | 0.019241 | 0.01926 | 0.01928 | 0.0 | 3.17 474s Comm | 0.3083 | 0.30924 | 0.31018 | 0.2 | 50.91 474s Output | 0.0011466 | 0.001889 | 0.0026314 | 1.7 | 0.31 474s Modify | 0.12394 | 0.12455 | 0.12515 | 0.2 | 20.50 474s Other | | 0.05997 | | | 9.87 474s 474s Nlocal: 210 ave 211 max 209 min 474s Histogram: 1 0 0 0 0 0 0 0 0 1 474s Nghost: 50 ave 51 max 49 min 474s Histogram: 1 0 0 0 0 0 0 0 0 1 474s Neighs: 563.5 ave 569 max 558 min 474s Histogram: 1 0 0 0 0 0 0 0 0 1 474s 474s Total # of neighbors = 1127 474s Ave neighs/atom = 2.6833333 474s Neighbor list builds = 560 474s Dangerous builds = 0 474s Total wall time: 0:00:00 474s LAMMPS (7 Feb 2024 - Update 1) 475s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 475s using 1 OpenMP thread(s) per MPI task 475s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 475s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 475s 1 by 1 by 1 MPI processor grid 475s Created 420 atoms 475s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 475s create_atoms CPU = 0.000 seconds 475s 60 atoms in group lower 475s 60 atoms in group upper 475s 120 atoms in group boundary 475s 300 atoms in group flow 475s Setting atom values ... 475s 60 settings made for type 475s Setting atom values ... 475s 60 settings made for type 475s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 475s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 475s Neighbor list info ... 475s update: every = 1 steps, delay = 5 steps, check = yes 475s max neighbors/atom: 2000, page size: 100000 475s master list distance cutoff = 1.42246 475s ghost atom cutoff = 1.42246 475s binsize = 0.71123, bins = 37 32 1 475s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 475s (1) pair lj/cut, perpetual 475s attributes: half, newton on 475s pair build: half/bin/atomonly/newton 475s stencil: half/bin/2d 475s bin: standard 475s Setting up Verlet run ... 475s Unit style : lj 475s Current step : 0 475s Time step : 0.003 475s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 475s Step Temp E_pair E_mol TotEng Press Volume 475s 0 1 0 0 0.71190476 0.52314537 571.54286 475s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 475s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 475s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 475s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 475s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 475s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 475s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 475s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 475s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 475s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 475s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 475s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 475s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 475s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 475s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 475s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 475s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 475s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 475s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 475s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 475s Loop time of 0.373845 on 1 procs for 10000 steps with 420 atoms 475s 475s Performance: 6933351.172 tau/day, 26749.040 timesteps/s, 11.235 Matom-step/s 475s 97.5% CPU use with 1 MPI tasks x 1 OpenMP threads 475s 475s MPI task timing breakdown: 475s Section | min time | avg time | max time |%varavg| %total 475s --------------------------------------------------------------- 475s Pair | 0.18774 | 0.18774 | 0.18774 | 0.0 | 50.22 475s Neigh | 0.03857 | 0.03857 | 0.03857 | 0.0 | 10.32 475s Comm | 0.0069546 | 0.0069546 | 0.0069546 | 0.0 | 1.86 475s Output | 0.00039266 | 0.00039266 | 0.00039266 | 0.0 | 0.11 475s Modify | 0.12229 | 0.12229 | 0.12229 | 0.0 | 32.71 475s Other | | 0.01789 | | | 4.79 475s 475s Nlocal: 420 ave 420 max 420 min 475s Histogram: 1 0 0 0 0 0 0 0 0 0 475s Nghost: 51 ave 51 max 51 min 475s Histogram: 1 0 0 0 0 0 0 0 0 0 475s Neighs: 1150 ave 1150 max 1150 min 475s Histogram: 1 0 0 0 0 0 0 0 0 0 475s 475s Total # of neighbors = 1150 475s Ave neighs/atom = 2.7380952 475s Neighbor list builds = 563 475s Dangerous builds = 0 475s Total wall time: 0:00:00 475s run: OK 475s /tmp/autopkgtest.GBYLKL/wrapper.sh: Killing leaked background processes: 4370 475s PID TTY STAT TIME COMMAND 475s /tmp/autopkgtest.GBYLKL/wrapper.sh: 235: kill: No such process 475s 475s /tmp/autopkgtest.GBYLKL/wrapper.sh: 237: kill: No such process 475s 475s autopkgtest [20:07:23]: test flow: -----------------------] 476s flow PASS 476s autopkgtest [20:07:24]: test flow: - - - - - - - - - - results - - - - - - - - - - 476s autopkgtest [20:07:24]: test friction: preparing testbed 481s Reading package lists... 481s Building dependency tree... 481s Reading state information... 481s Starting pkgProblemResolver with broken count: 0 481s Starting 2 pkgProblemResolver with broken count: 0 481s Done 482s The following NEW packages will be installed: 482s autopkgtest-satdep 482s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 482s Need to get 0 B/708 B of archives. 482s After this operation, 0 B of additional disk space will be used. 482s Get:1 /tmp/autopkgtest.GBYLKL/5-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [708 B] 483s Selecting previously unselected package autopkgtest-satdep. 483s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80472 files and directories currently installed.) 483s Preparing to unpack .../5-autopkgtest-satdep.deb ... 483s Unpacking autopkgtest-satdep (0) ... 483s Setting up autopkgtest-satdep (0) ... 485s (Reading database ... 80472 files and directories currently installed.) 485s Removing autopkgtest-satdep (0) ... 486s autopkgtest [20:07:34]: test friction: [----------------------- 486s LAMMPS (7 Feb 2024 - Update 1) 486s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 486s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 486s using 1 OpenMP thread(s) per MPI task 486s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 486s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 486s 2 by 1 by 1 MPI processor grid 486s Created 750 atoms 486s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 486s create_atoms CPU = 0.001 seconds 486s Created 750 atoms 486s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 486s create_atoms CPU = 0.001 seconds 486s Created 112 atoms 486s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 486s create_atoms CPU = 0.001 seconds 486s Created 112 atoms 486s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 486s create_atoms CPU = 0.001 seconds 486s 750 atoms in group lo 486s 862 atoms in group lo 486s 750 atoms in group hi 486s 862 atoms in group hi 486s 150 atoms in group lo-fixed 486s 150 atoms in group hi-fixed 486s 300 atoms in group boundary 486s 1424 atoms in group mobile 486s Setting atom values ... 486s 150 settings made for type 486s Setting atom values ... 486s 150 settings made for type 486s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 486s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 486s Neighbor list info ... 486s update: every = 1 steps, delay = 5 steps, check = yes 486s max neighbors/atom: 2000, page size: 100000 486s master list distance cutoff = 2.8 486s ghost atom cutoff = 2.8 486s binsize = 1.4, bins = 41 31 1 486s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 486s (1) pair lj/cut, perpetual 486s attributes: half, newton on 486s pair build: half/bin/atomonly/newton 486s stencil: half/bin/2d 486s bin: standard 486s Setting up Verlet run ... 486s Unit style : lj 486s Current step : 0 486s Time step : 0.0025 486s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 486s Step Temp E_pair E_mol TotEng Press Volume 486s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 487s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 487s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 488s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 489s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 489s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 490s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 491s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 491s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 492s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 493s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 494s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 494s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 495s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 496s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 496s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 497s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 497s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 498s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 499s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 499s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 499s Loop time of 12.7817 on 2 procs for 20000 steps with 1724 atoms 499s 499s Performance: 337982.501 tau/day, 1564.734 timesteps/s, 2.698 Matom-step/s 499s 42.2% CPU use with 2 MPI tasks x 1 OpenMP threads 499s 499s MPI task timing breakdown: 499s Section | min time | avg time | max time |%varavg| %total 499s --------------------------------------------------------------- 499s Pair | 4.4041 | 4.7485 | 5.093 | 15.8 | 37.15 499s Neigh | 0.20848 | 0.22766 | 0.24684 | 4.0 | 1.78 499s Comm | 6.6431 | 7.0361 | 7.4291 | 14.8 | 55.05 499s Output | 0.001914 | 0.0037793 | 0.0056446 | 3.0 | 0.03 499s Modify | 0.31564 | 0.34082 | 0.36601 | 4.3 | 2.67 499s Other | | 0.4248 | | | 3.32 499s 499s Nlocal: 862 ave 874 max 850 min 499s Histogram: 1 0 0 0 0 0 0 0 0 1 499s Nghost: 165.5 ave 166 max 165 min 499s Histogram: 1 0 0 0 0 0 0 0 0 1 499s Neighs: 7198 ave 7283 max 7113 min 499s Histogram: 1 0 0 0 0 0 0 0 0 1 499s 499s Total # of neighbors = 14396 499s Ave neighs/atom = 8.350348 499s Neighbor list builds = 720 499s Dangerous builds = 0 499s Total wall time: 0:00:12 499s LAMMPS (7 Feb 2024 - Update 1) 510s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 510s using 1 OpenMP thread(s) per MPI task 510s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 510s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 510s 1 by 1 by 1 MPI processor grid 510s Created 750 atoms 510s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 510s create_atoms CPU = 0.001 seconds 510s Created 750 atoms 510s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 510s create_atoms CPU = 0.000 seconds 510s Created 112 atoms 510s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 510s create_atoms CPU = 0.000 seconds 510s Created 112 atoms 510s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 510s create_atoms CPU = 0.000 seconds 510s 750 atoms in group lo 510s 862 atoms in group lo 510s 750 atoms in group hi 510s 862 atoms in group hi 510s 150 atoms in group lo-fixed 510s 150 atoms in group hi-fixed 510s 300 atoms in group boundary 510s 1424 atoms in group mobile 510s Setting atom values ... 510s 150 settings made for type 510s Setting atom values ... 510s 150 settings made for type 510s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 510s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 510s Neighbor list info ... 510s update: every = 1 steps, delay = 5 steps, check = yes 510s max neighbors/atom: 2000, page size: 100000 510s master list distance cutoff = 2.8 510s ghost atom cutoff = 2.8 510s binsize = 1.4, bins = 41 31 1 510s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 510s (1) pair lj/cut, perpetual 510s attributes: half, newton on 510s pair build: half/bin/atomonly/newton 510s stencil: half/bin/2d 510s bin: standard 510s Setting up Verlet run ... 510s Unit style : lj 510s Current step : 0 510s Time step : 0.0025 510s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 510s Step Temp E_pair E_mol TotEng Press Volume 510s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 510s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 510s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 510s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 510s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 510s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 510s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 510s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 510s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 510s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 510s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 510s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 510s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 510s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 510s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 510s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 510s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 510s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 510s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 510s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 510s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 510s Loop time of 11.1294 on 1 procs for 20000 steps with 1724 atoms 510s 510s Performance: 388161.161 tau/day, 1797.042 timesteps/s, 3.098 Matom-step/s 510s 92.7% CPU use with 1 MPI tasks x 1 OpenMP threads 510s 510s MPI task timing breakdown: 510s Section | min time | avg time | max time |%varavg| %total 510s --------------------------------------------------------------- 510s Pair | 9.6957 | 9.6957 | 9.6957 | 0.0 | 87.12 510s Neigh | 0.45748 | 0.45748 | 0.45748 | 0.0 | 4.11 510s Comm | 0.059737 | 0.059737 | 0.059737 | 0.0 | 0.54 510s Output | 0.0012945 | 0.0012945 | 0.0012945 | 0.0 | 0.01 510s Modify | 0.71455 | 0.71455 | 0.71455 | 0.0 | 6.42 510s Other | | 0.2006 | | | 1.80 510s 510s Nlocal: 1724 ave 1724 max 1724 min 510s Histogram: 1 0 0 0 0 0 0 0 0 0 510s Nghost: 145 ave 145 max 145 min 510s Histogram: 1 0 0 0 0 0 0 0 0 0 510s Neighs: 14397 ave 14397 max 14397 min 510s Histogram: 1 0 0 0 0 0 0 0 0 0 510s 510s Total # of neighbors = 14397 510s Ave neighs/atom = 8.3509281 510s Neighbor list builds = 723 510s Dangerous builds = 0 510s Total wall time: 0:00:11 510s run: OK 511s autopkgtest [20:07:59]: test friction: -----------------------] 511s autopkgtest [20:07:59]: test friction: - - - - - - - - - - results - - - - - - - - - - 511s friction PASS 512s autopkgtest [20:08:00]: test hugo: preparing testbed 515s Reading package lists... 515s Building dependency tree... 515s Reading state information... 515s Starting pkgProblemResolver with broken count: 0 515s Starting 2 pkgProblemResolver with broken count: 0 515s Done 515s The following NEW packages will be installed: 515s autopkgtest-satdep 515s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 515s Need to get 0 B/704 B of archives. 515s After this operation, 0 B of additional disk space will be used. 515s Get:1 /tmp/autopkgtest.GBYLKL/6-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 516s Selecting previously unselected package autopkgtest-satdep. 516s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80472 files and directories currently installed.) 516s Preparing to unpack .../6-autopkgtest-satdep.deb ... 516s Unpacking autopkgtest-satdep (0) ... 516s Setting up autopkgtest-satdep (0) ... 519s (Reading database ... 80472 files and directories currently installed.) 519s Removing autopkgtest-satdep (0) ... 520s autopkgtest [20:08:08]: test hugo: [----------------------- 520s LAMMPS (7 Feb 2024 - Update 1) 520s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 520s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 520s using 1 OpenMP thread(s) per MPI task 520s Lattice spacing in x,y,z = 1.4142135 2 2 520s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 520s 1 by 1 by 2 MPI processor grid 520s Created 1000 atoms 520s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 520s create_atoms CPU = 0.001 seconds 520s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 520s Neighbor list info ... 520s update: every = 1 steps, delay = 0 steps, check = yes 520s max neighbors/atom: 2000, page size: 100000 520s master list distance cutoff = 1.8475372 520s ghost atom cutoff = 1.8475372 520s binsize = 0.92376862, bins = 8 11 11 520s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 520s (1) pair lj/cubic, perpetual 520s attributes: half, newton on 520s pair build: half/bin/atomonly/newton 520s stencil: half/bin/3d 520s bin: standard 520s Setting up cg style minimization ... 520s Unit style : lj 520s Current step : 0 520s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 520s (src/min.cpp:219) 520s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 520s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 520s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 520s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 520s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 520s Loop time of 0.136036 on 2 procs for 134 steps with 1000 atoms 520s 520s 43.2% CPU use with 2 MPI tasks x 1 OpenMP threads 520s 520s Minimization stats: 520s Stopping criterion = force tolerance 520s Energy initial, next-to-last, final = 520s -6.29375358358574 -6.33442531515467 -6.33442531515467 520s Force two-norm initial, final = 3395.2895 5.526433e-10 520s Force max component initial, final = 1960.2713 3.2059964e-10 520s Final line search alpha, max atom move = 1 3.2059964e-10 520s Iterations, force evaluations = 134 137 520s 520s MPI task timing breakdown: 520s Section | min time | avg time | max time |%varavg| %total 520s --------------------------------------------------------------- 520s Pair | 0.041102 | 0.045689 | 0.050276 | 2.1 | 33.59 520s Neigh | 0.00068225 | 0.00072688 | 0.00077151 | 0.0 | 0.53 520s Comm | 0.060371 | 0.064987 | 0.069603 | 1.8 | 47.77 520s Output | 8.7599e-05 | 0.00017014 | 0.00025268 | 0.0 | 0.13 520s Modify | 0 | 0 | 0 | 0.0 | 0.00 520s Other | | 0.02446 | | | 17.98 520s 520s Nlocal: 500 ave 550 max 450 min 520s Histogram: 1 0 0 0 0 0 0 0 0 1 520s Nghost: 1214 ave 1264 max 1164 min 520s Histogram: 1 0 0 0 0 0 0 0 0 1 520s Neighs: 10500 ave 11550 max 9450 min 520s Histogram: 1 0 0 0 0 0 0 0 0 1 520s 520s Total # of neighbors = 21000 520s Ave neighs/atom = 21 520s Neighbor list builds = 1 520s Dangerous builds = 0 520s System init for write_restart ... 520s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 520s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 520s using 1 OpenMP thread(s) per MPI task 520s Reading restart file ... 520s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 520s restoring atom style atomic from restart 520s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 520s 1 by 1 by 2 MPI processor grid 520s restoring pair style lj/cubic from restart 520s 1000 atoms 520s read_restart CPU = 0.002 seconds 520s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 520s Neighbor list info ... 520s update: every = 1 steps, delay = 0 steps, check = yes 520s max neighbors/atom: 2000, page size: 100000 520s master list distance cutoff = 1.7475372 520s ghost atom cutoff = 1.7475372 520s binsize = 0.87376862, bins = 8 12 12 520s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 520s (1) pair lj/cubic, perpetual 520s attributes: half, newton on 520s pair build: half/bin/atomonly/newton 520s stencil: half/bin/3d 520s bin: standard 520s Setting up Verlet run ... 520s Unit style : lj 520s Current step : 0 520s Time step : 0.001 520s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 520s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 520s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 521s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 522s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 524s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 525s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 526s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 527s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 529s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 530s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 531s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 533s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 533s Loop time of 12.2378 on 2 procs for 10000 steps with 1000 atoms 533s 533s Performance: 70601.043 tau/day, 817.142 timesteps/s, 817.142 katom-step/s 533s 37.8% CPU use with 2 MPI tasks x 1 OpenMP threads 533s 533s MPI task timing breakdown: 533s Section | min time | avg time | max time |%varavg| %total 533s --------------------------------------------------------------- 533s Pair | 3.8992 | 3.9251 | 3.951 | 1.3 | 32.07 533s Neigh | 0.13639 | 0.1377 | 0.13901 | 0.4 | 1.13 533s Comm | 6.1794 | 6.2083 | 6.2371 | 1.2 | 50.73 533s Output | 0.0027286 | 0.0032676 | 0.0038067 | 0.9 | 0.03 533s Modify | 1.6491 | 1.6526 | 1.6561 | 0.3 | 13.50 533s Other | | 0.3108 | | | 2.54 533s 533s Nlocal: 500 ave 509 max 491 min 533s Histogram: 1 0 0 0 0 0 0 0 0 1 533s Nghost: 1346.5 ave 1369 max 1324 min 533s Histogram: 1 0 0 0 0 0 0 0 0 1 533s Neighs: 10311.5 ave 10391 max 10232 min 533s Histogram: 1 0 0 0 0 0 0 0 0 1 533s 533s Total # of neighbors = 20623 533s Ave neighs/atom = 20.623 533s Neighbor list builds = 205 533s Dangerous builds = 0 533s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 533s using 1 OpenMP thread(s) per MPI task 533s Reading restart file ... 533s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 533s restoring atom style atomic from restart 533s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 533s 1 by 1 by 2 MPI processor grid 533s restoring pair style lj/cubic from restart 533s 1000 atoms 533s read_restart CPU = 0.002 seconds 533s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 533s Neighbor list info ... 533s update: every = 1 steps, delay = 0 steps, check = yes 533s max neighbors/atom: 2000, page size: 100000 533s master list distance cutoff = 1.7475372 533s ghost atom cutoff = 1.7475372 533s binsize = 0.87376862, bins = 8 12 12 533s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 533s (1) pair lj/cubic, perpetual 533s attributes: half, newton on 533s pair build: half/bin/atomonly/newton 533s stencil: half/bin/3d 533s bin: standard 533s Setting up Verlet run ... 533s Unit style : lj 533s Current step : 0 533s Time step : 0.001 533s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 533s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 533s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 534s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 535s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 536s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 537s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 538s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 539s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 541s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 542s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 543s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 543s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 543s Loop time of 10.9201 on 2 procs for 10000 steps with 1000 atoms 543s 543s Performance: 79120.371 tau/day, 915.745 timesteps/s, 915.745 katom-step/s 543s 37.5% CPU use with 2 MPI tasks x 1 OpenMP threads 543s 543s MPI task timing breakdown: 543s Section | min time | avg time | max time |%varavg| %total 543s --------------------------------------------------------------- 543s Pair | 3.4606 | 3.4947 | 3.5289 | 1.8 | 32.00 543s Neigh | 0.011113 | 0.013573 | 0.016034 | 2.1 | 0.12 543s Comm | 5.4291 | 5.4539 | 5.4786 | 1.1 | 49.94 543s Output | 0.002864 | 0.003114 | 0.003364 | 0.4 | 0.03 543s Modify | 1.6181 | 1.6588 | 1.6995 | 3.2 | 15.19 543s Other | | 0.296 | | | 2.71 543s 543s Nlocal: 500 ave 508 max 492 min 543s Histogram: 1 0 0 0 0 0 0 0 0 1 543s Nghost: 1214 ave 1222 max 1206 min 543s Histogram: 1 0 0 0 0 0 0 0 0 1 543s Neighs: 10500 ave 10668 max 10332 min 543s Histogram: 1 0 0 0 0 0 0 0 0 1 543s 543s Total # of neighbors = 21000 543s Ave neighs/atom = 21 543s Neighbor list builds = 10 543s Dangerous builds = 0 543s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 543s using 1 OpenMP thread(s) per MPI task 543s Reading restart file ... 543s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 543s restoring atom style atomic from restart 543s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 543s 1 by 1 by 2 MPI processor grid 543s restoring pair style lj/cubic from restart 543s 1000 atoms 543s read_restart CPU = 0.001 seconds 543s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 543s Neighbor list info ... 543s update: every = 1 steps, delay = 0 steps, check = yes 543s max neighbors/atom: 2000, page size: 100000 543s master list distance cutoff = 1.7475372 543s ghost atom cutoff = 1.7475372 543s binsize = 0.87376862, bins = 8 12 12 543s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 543s (1) pair lj/cubic, perpetual 543s attributes: half, newton on 543s pair build: half/bin/atomonly/newton 543s stencil: half/bin/3d 543s bin: standard 543s Setting up Verlet run ... 543s Unit style : lj 543s Current step : 0 543s Time step : 0.001 543s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 543s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 543s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 544s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 545s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 546s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 548s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 549s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 550s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 551s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 552s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 553s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 555s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 555s Loop time of 11.0939 on 2 procs for 10000 steps with 1000 atoms 555s 555s Performance: 77880.957 tau/day, 901.400 timesteps/s, 901.400 katom-step/s 555s 37.4% CPU use with 2 MPI tasks x 1 OpenMP threads 555s 555s MPI task timing breakdown: 555s Section | min time | avg time | max time |%varavg| %total 555s --------------------------------------------------------------- 555s Pair | 3.4844 | 3.4928 | 3.5012 | 0.4 | 31.48 555s Neigh | 0.063047 | 0.068964 | 0.074881 | 2.3 | 0.62 555s Comm | 5.5582 | 5.5643 | 5.5704 | 0.3 | 50.16 555s Output | 0.0025812 | 0.0035489 | 0.0045166 | 1.6 | 0.03 555s Modify | 1.6581 | 1.6647 | 1.6712 | 0.5 | 15.01 555s Other | | 0.2996 | | | 2.70 555s 555s Nlocal: 500 ave 510 max 490 min 555s Histogram: 1 0 0 0 0 0 0 0 0 1 555s Nghost: 1216.5 ave 1227 max 1206 min 555s Histogram: 1 0 0 0 0 0 0 0 0 1 555s Neighs: 10311 ave 10520 max 10102 min 555s Histogram: 1 0 0 0 0 0 0 0 0 1 555s 555s Total # of neighbors = 20622 555s Ave neighs/atom = 20.622 555s Neighbor list builds = 95 555s Dangerous builds = 0 555s Total wall time: 0:00:34 555s LAMMPS (7 Feb 2024 - Update 1) 555s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 555s using 1 OpenMP thread(s) per MPI task 555s Lattice spacing in x,y,z = 1.4142135 2 2 555s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 555s 1 by 1 by 1 MPI processor grid 555s Created 1000 atoms 555s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 555s create_atoms CPU = 0.001 seconds 555s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 555s Neighbor list info ... 555s update: every = 1 steps, delay = 0 steps, check = yes 555s max neighbors/atom: 2000, page size: 100000 555s master list distance cutoff = 1.8475372 555s ghost atom cutoff = 1.8475372 555s binsize = 0.92376862, bins = 8 11 11 555s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 555s (1) pair lj/cubic, perpetual 555s attributes: half, newton on 555s pair build: half/bin/atomonly/newton 555s stencil: half/bin/3d 555s bin: standard 555s Setting up cg style minimization ... 555s Unit style : lj 555s Current step : 0 555s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 555s (src/min.cpp:219) 555s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 555s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 555s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 555s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 555s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 555s Loop time of 0.104279 on 1 procs for 134 steps with 1000 atoms 555s 555s 94.2% CPU use with 1 MPI tasks x 1 OpenMP threads 555s 555s Minimization stats: 555s Stopping criterion = force tolerance 555s Energy initial, next-to-last, final = 555s -6.29375358358556 -6.33442531515503 -6.33442531515503 555s Force two-norm initial, final = 3395.2895 5.6047601e-10 555s Force max component initial, final = 1960.2713 3.2666928e-10 555s Final line search alpha, max atom move = 1 3.2666928e-10 555s Iterations, force evaluations = 134 137 555s 555s MPI task timing breakdown: 555s Section | min time | avg time | max time |%varavg| %total 555s --------------------------------------------------------------- 555s Pair | 0.085125 | 0.085125 | 0.085125 | 0.0 | 81.63 555s Neigh | 0.0013988 | 0.0013988 | 0.0013988 | 0.0 | 1.34 555s Comm | 0.0016447 | 0.0016447 | 0.0016447 | 0.0 | 1.58 555s Output | 3.0004e-05 | 3.0004e-05 | 3.0004e-05 | 0.0 | 0.03 555s Modify | 0 | 0 | 0 | 0.0 | 0.00 555s Other | | 0.01608 | | | 15.42 555s 555s Nlocal: 1000 ave 1000 max 1000 min 555s Histogram: 1 0 0 0 0 0 0 0 0 0 555s Nghost: 1724 ave 1724 max 1724 min 555s Histogram: 1 0 0 0 0 0 0 0 0 0 555s Neighs: 21000 ave 21000 max 21000 min 555s Histogram: 1 0 0 0 0 0 0 0 0 0 555s 555s Total # of neighbors = 21000 555s Ave neighs/atom = 21 555s Neighbor list builds = 1 555s Dangerous builds = 0 555s System init for write_restart ... 555s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 555s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 555s using 1 OpenMP thread(s) per MPI task 555s Reading restart file ... 555s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 555s restoring atom style atomic from restart 555s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 555s 1 by 1 by 1 MPI processor grid 555s restoring pair style lj/cubic from restart 555s 1000 atoms 555s read_restart CPU = 0.001 seconds 555s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 555s Neighbor list info ... 555s update: every = 1 steps, delay = 0 steps, check = yes 555s max neighbors/atom: 2000, page size: 100000 555s master list distance cutoff = 1.7475372 555s ghost atom cutoff = 1.7475372 555s binsize = 0.87376862, bins = 8 12 12 555s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 564s (1) pair lj/cubic, perpetual 564s attributes: half, newton on 564s pair build: half/bin/atomonly/newton 564s stencil: half/bin/3d 564s bin: standard 564s Setting up Verlet run ... 564s Unit style : lj 564s Current step : 0 564s Time step : 0.001 564s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 564s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 564s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 564s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 564s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 564s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 564s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 564s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 564s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 564s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 564s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 564s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 564s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 564s Loop time of 9.12296 on 1 procs for 10000 steps with 1000 atoms 564s 564s Performance: 94706.114 tau/day, 1096.136 timesteps/s, 1.096 Matom-step/s 564s 91.9% CPU use with 1 MPI tasks x 1 OpenMP threads 564s 564s MPI task timing breakdown: 564s Section | min time | avg time | max time |%varavg| %total 564s --------------------------------------------------------------- 564s Pair | 7.5722 | 7.5722 | 7.5722 | 0.0 | 83.00 564s Neigh | 0.24363 | 0.24363 | 0.24363 | 0.0 | 2.67 564s Comm | 0.16629 | 0.16629 | 0.16629 | 0.0 | 1.82 564s Output | 0.0031025 | 0.0031025 | 0.0031025 | 0.0 | 0.03 564s Modify | 1.053 | 1.053 | 1.053 | 0.0 | 11.54 564s Other | | 0.08474 | | | 0.93 564s 564s Nlocal: 1000 ave 1000 max 1000 min 564s Histogram: 1 0 0 0 0 0 0 0 0 0 564s Nghost: 1886 ave 1886 max 1886 min 564s Histogram: 1 0 0 0 0 0 0 0 0 0 564s Neighs: 20874 ave 20874 max 20874 min 564s Histogram: 1 0 0 0 0 0 0 0 0 0 564s 564s Total # of neighbors = 20874 564s Ave neighs/atom = 20.874 564s Neighbor list builds = 188 564s Dangerous builds = 0 564s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 564s using 1 OpenMP thread(s) per MPI task 564s Reading restart file ... 564s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 564s restoring atom style atomic from restart 564s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 564s 1 by 1 by 1 MPI processor grid 564s restoring pair style lj/cubic from restart 564s 1000 atoms 564s read_restart CPU = 0.001 seconds 564s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 564s Neighbor list info ... 573s update: every = 1 steps, delay = 0 steps, check = yes 573s max neighbors/atom: 2000, page size: 100000 573s master list distance cutoff = 1.7475372 573s ghost atom cutoff = 1.7475372 573s binsize = 0.87376862, bins = 8 12 12 573s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 573s (1) pair lj/cubic, perpetual 573s attributes: half, newton on 573s pair build: half/bin/atomonly/newton 573s stencil: half/bin/3d 573s bin: standard 573s Setting up Verlet run ... 573s Unit style : lj 573s Current step : 0 573s Time step : 0.001 573s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 573s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 573s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 573s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 573s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 573s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 573s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 573s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 573s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 573s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 573s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 573s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 573s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 573s Loop time of 9.12616 on 1 procs for 10000 steps with 1000 atoms 573s 573s Performance: 94672.915 tau/day, 1095.751 timesteps/s, 1.096 Matom-step/s 573s 83.0% CPU use with 1 MPI tasks x 1 OpenMP threads 573s 573s MPI task timing breakdown: 573s Section | min time | avg time | max time |%varavg| %total 573s --------------------------------------------------------------- 573s Pair | 7.5312 | 7.5312 | 7.5312 | 0.0 | 82.52 573s Neigh | 0.015502 | 0.015502 | 0.015502 | 0.0 | 0.17 573s Comm | 0.20552 | 0.20552 | 0.20552 | 0.0 | 2.25 573s Output | 0.0012426 | 0.0012426 | 0.0012426 | 0.0 | 0.01 573s Modify | 1.272 | 1.272 | 1.272 | 0.0 | 13.94 573s Other | | 0.1007 | | | 1.10 573s 573s Nlocal: 1000 ave 1000 max 1000 min 573s Histogram: 1 0 0 0 0 0 0 0 0 0 573s Nghost: 1724 ave 1724 max 1724 min 573s Histogram: 1 0 0 0 0 0 0 0 0 0 573s Neighs: 21000 ave 21000 max 21000 min 573s Histogram: 1 0 0 0 0 0 0 0 0 0 573s 573s Total # of neighbors = 21000 573s Ave neighs/atom = 21 573s Neighbor list builds = 11 573s Dangerous builds = 0 573s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 573s using 1 OpenMP thread(s) per MPI task 573s Reading restart file ... 573s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 573s restoring atom style atomic from restart 581s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 581s 1 by 1 by 1 MPI processor grid 581s restoring pair style lj/cubic from restart 581s 1000 atoms 581s read_restart CPU = 0.001 seconds 581s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 581s Neighbor list info ... 581s update: every = 1 steps, delay = 0 steps, check = yes 581s max neighbors/atom: 2000, page size: 100000 581s master list distance cutoff = 1.7475372 581s ghost atom cutoff = 1.7475372 581s binsize = 0.87376862, bins = 8 12 12 581s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 581s (1) pair lj/cubic, perpetual 581s attributes: half, newton on 581s pair build: half/bin/atomonly/newton 581s stencil: half/bin/3d 581s bin: standard 581s Setting up Verlet run ... 581s Unit style : lj 581s Current step : 0 581s Time step : 0.001 581s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 581s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 581s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 581s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 581s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 581s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 581s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 581s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 581s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 581s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 581s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 581s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 581s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 581s Loop time of 8.18588 on 1 procs for 10000 steps with 1000 atoms 581s 581s Performance: 105547.630 tau/day, 1221.616 timesteps/s, 1.222 Matom-step/s 581s 89.6% CPU use with 1 MPI tasks x 1 OpenMP threads 581s 581s MPI task timing breakdown: 581s Section | min time | avg time | max time |%varavg| %total 581s --------------------------------------------------------------- 581s Pair | 6.7563 | 6.7563 | 6.7563 | 0.0 | 82.54 581s Neigh | 0.12106 | 0.12106 | 0.12106 | 0.0 | 1.48 581s Comm | 0.15402 | 0.15402 | 0.15402 | 0.0 | 1.88 581s Output | 0.0007271 | 0.0007271 | 0.0007271 | 0.0 | 0.01 581s Modify | 1.0733 | 1.0733 | 1.0733 | 0.0 | 13.11 581s Other | | 0.08047 | | | 0.98 581s 581s Nlocal: 1000 ave 1000 max 1000 min 581s Histogram: 1 0 0 0 0 0 0 0 0 0 581s Nghost: 1724 ave 1724 max 1724 min 581s Histogram: 1 0 0 0 0 0 0 0 0 0 581s Neighs: 20654 ave 20654 max 20654 min 581s Histogram: 1 0 0 0 0 0 0 0 0 0 581s 581s Total # of neighbors = 20654 581s Ave neighs/atom = 20.654 581s Neighbor list builds = 94 581s Dangerous builds = 0 581s Total wall time: 0:00:26 581s run: OK 582s autopkgtest [20:09:10]: test hugo: -----------------------] 582s hugo PASS 582s autopkgtest [20:09:10]: test hugo: - - - - - - - - - - results - - - - - - - - - - 583s autopkgtest [20:09:11]: test command1: preparing testbed 830s autopkgtest [20:13:18]: testbed dpkg architecture: s390x 830s autopkgtest [20:13:18]: testbed apt version: 2.7.14build2 830s autopkgtest [20:13:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 830s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 831s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [831 kB] 832s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [10.6 kB] 832s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4680 B] 832s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [358 kB] 832s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [279 kB] 833s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 833s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1192 B] 833s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 833s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [905 kB] 833s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 833s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [5120 B] 833s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 835s Fetched 2521 kB in 4s (709 kB/s) 835s Reading package lists... 838s Reading package lists... 838s Building dependency tree... 838s Reading state information... 838s Calculating upgrade... 839s The following packages will be upgraded: 839s curl libcurl3t64-gnutls libcurl4t64 839s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 839s Need to get 947 kB of archives. 839s After this operation, 0 B of additional disk space will be used. 839s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x curl s390x 8.5.0-2ubuntu10 [227 kB] 839s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu10 [363 kB] 839s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl3t64-gnutls s390x 8.5.0-2ubuntu10 [356 kB] 840s Fetched 947 kB in 1s (1006 kB/s) 840s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78332 files and directories currently installed.) 840s Preparing to unpack .../curl_8.5.0-2ubuntu10_s390x.deb ... 840s Unpacking curl (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 840s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu10_s390x.deb ... 840s Unpacking libcurl4t64:s390x (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 840s Preparing to unpack .../libcurl3t64-gnutls_8.5.0-2ubuntu10_s390x.deb ... 840s Unpacking libcurl3t64-gnutls:s390x (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 840s Setting up libcurl4t64:s390x (8.5.0-2ubuntu10) ... 840s Setting up libcurl3t64-gnutls:s390x (8.5.0-2ubuntu10) ... 840s Setting up curl (8.5.0-2ubuntu10) ... 840s Processing triggers for man-db (2.12.0-4build1) ... 841s Processing triggers for libc-bin (2.39-0ubuntu8) ... 841s Reading package lists... 841s Building dependency tree... 841s Reading state information... 842s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 842s Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] 843s Get:2 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] 843s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 843s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 843s Get:5 http://ftpmaster.internal/ubuntu noble/multiverse Sources [294 kB] 843s Get:6 http://ftpmaster.internal/ubuntu noble/universe Sources [19.8 MB] 847s Get:7 http://ftpmaster.internal/ubuntu noble/restricted Sources [23.6 kB] 847s Get:8 http://ftpmaster.internal/ubuntu noble/main Sources [1366 kB] 847s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x Packages [1344 kB] 847s Get:10 http://ftpmaster.internal/ubuntu noble/restricted s390x Packages [4600 B] 847s Get:11 http://ftpmaster.internal/ubuntu noble/universe s390x Packages [14.8 MB] 847s Get:12 http://ftpmaster.internal/ubuntu noble/multiverse s390x Packages [167 kB] 847s Get:13 http://ftpmaster.internal/ubuntu noble-updates/restricted Sources [5624 B] 847s Get:14 http://ftpmaster.internal/ubuntu noble-updates/main Sources [13.5 kB] 847s Get:15 http://ftpmaster.internal/ubuntu noble-updates/multiverse Sources [5652 B] 847s Get:16 http://ftpmaster.internal/ubuntu noble-updates/universe Sources [358 kB] 847s Get:17 http://ftpmaster.internal/ubuntu noble-updates/main s390x Packages [18.4 kB] 848s Get:18 http://ftpmaster.internal/ubuntu noble-updates/universe s390x Packages [515 kB] 848s Get:19 http://ftpmaster.internal/ubuntu noble-updates/multiverse s390x Packages [4008 B] 856s Fetched 39.0 MB in 13s (2951 kB/s) 857s Reading package lists... 857s Reading package lists... 858s Building dependency tree... 858s Reading state information... 858s Calculating upgrade... 858s The following packages will be upgraded: 858s bash libpython3.12-minimal libpython3.12-stdlib libsasl2-2 libsasl2-modules 858s libsasl2-modules-db python3-gi python3.12 python3.12-minimal 858s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 858s Need to get 7236 kB of archives. 858s After this operation, 280 kB disk space will be freed. 858s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x bash s390x 5.2.21-2ubuntu4 [845 kB] 859s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x python3.12 s390x 3.12.2-5ubuntu3 [644 kB] 859s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12-stdlib s390x 3.12.2-5ubuntu3 [2066 kB] 860s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x python3.12-minimal s390x 3.12.2-5ubuntu3 [2459 kB] 860s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12-minimal s390x 3.12.2-5ubuntu3 [830 kB] 860s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x python3-gi s390x 3.48.2-1 [236 kB] 860s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-modules-db s390x 2.1.28+dfsg1-5ubuntu3 [21.3 kB] 860s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-2 s390x 2.1.28+dfsg1-5ubuntu3 [57.8 kB] 860s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-modules s390x 2.1.28+dfsg1-5ubuntu3 [76.7 kB] 861s Fetched 7236 kB in 2s (3366 kB/s) 861s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78332 files and directories currently installed.) 861s Preparing to unpack .../bash_5.2.21-2ubuntu4_s390x.deb ... 861s Unpacking bash (5.2.21-2ubuntu4) over (5.2.21-2ubuntu2) ... 861s Setting up bash (5.2.21-2ubuntu4) ... 861s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 861s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78332 files and directories currently installed.) 861s Preparing to unpack .../0-python3.12_3.12.2-5ubuntu3_s390x.deb ... 861s Unpacking python3.12 (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 861s Preparing to unpack .../1-libpython3.12-stdlib_3.12.2-5ubuntu3_s390x.deb ... 861s Unpacking libpython3.12-stdlib:s390x (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 861s Preparing to unpack .../2-python3.12-minimal_3.12.2-5ubuntu3_s390x.deb ... 861s Unpacking python3.12-minimal (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 861s Preparing to unpack .../3-libpython3.12-minimal_3.12.2-5ubuntu3_s390x.deb ... 861s Unpacking libpython3.12-minimal:s390x (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 861s Preparing to unpack .../4-python3-gi_3.48.2-1_s390x.deb ... 862s Unpacking python3-gi (3.48.2-1) over (3.48.1-1build1) ... 862s Preparing to unpack .../5-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3_s390x.deb ... 862s Unpacking libsasl2-modules-db:s390x (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 862s Preparing to unpack .../6-libsasl2-2_2.1.28+dfsg1-5ubuntu3_s390x.deb ... 862s Unpacking libsasl2-2:s390x (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 862s Preparing to unpack .../7-libsasl2-modules_2.1.28+dfsg1-5ubuntu3_s390x.deb ... 862s Unpacking libsasl2-modules:s390x (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 862s Setting up libsasl2-modules:s390x (2.1.28+dfsg1-5ubuntu3) ... 862s Setting up libpython3.12-minimal:s390x (3.12.2-5ubuntu3) ... 862s Setting up libsasl2-modules-db:s390x (2.1.28+dfsg1-5ubuntu3) ... 862s Setting up python3-gi (3.48.2-1) ... 862s Setting up libsasl2-2:s390x (2.1.28+dfsg1-5ubuntu3) ... 862s Setting up python3.12-minimal (3.12.2-5ubuntu3) ... 863s Setting up libpython3.12-stdlib:s390x (3.12.2-5ubuntu3) ... 863s Setting up python3.12 (3.12.2-5ubuntu3) ... 865s Processing triggers for systemd (255.4-1ubuntu7) ... 865s Processing triggers for man-db (2.12.0-4build1) ... 865s Processing triggers for debianutils (5.17build1) ... 865s Processing triggers for install-info (7.1-3build2) ... 865s Processing triggers for libc-bin (2.39-0ubuntu8) ... 866s Reading package lists... 866s Building dependency tree... 866s Reading state information... 866s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 870s Reading package lists... 871s Building dependency tree... 871s Reading state information... 871s Starting pkgProblemResolver with broken count: 0 871s Starting 2 pkgProblemResolver with broken count: 0 871s Done 871s The following additional packages will be installed: 871s autoconf automake autotools-dev cpp-12 gcc-12 gcc-12-base gfortran-12 871s libaec0 libasan8 libatomic1 libblas3 libcairo2 libcc1-0 871s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 871s libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 871s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 871s libfftw3-double3 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 871s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 871s libglx0 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-dev 871s libhwloc-plugins libhwloc15 libibverbs-dev libisl23 libitm1 libjs-jquery 871s libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev liblammps0t64 871s liblapack3 libllvm17t64 libltdl-dev libltdl7 libmpc3 libmunge2 871s libnetcdf19t64 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 libopengl0 871s libopenmpi-dev libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix-dev 871s libpmix2t64 libpnetcdf0d libproj25 libpython3.12t64 librdmacm1t64 libsz2 871s libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtk8.6 871s libubsan1 libvoro++1 libvtk9.1t64 libvulkan1 libx11-xcb1 libxcb-dri2-0 871s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 871s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 871s libxrender1 libxshmfence1 libxss1 libxxf86vm1 m4 mpi-default-bin 871s mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 871s python3-lammps x11-common zlib1g-dev 871s Suggested packages: 871s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-12-locales 871s cpp-12-doc gcc-12-multilib gcc-12-doc gfortran-12-multilib gfortran-12-doc 871s libcoarrays-dev libfftw3-bin libfftw3-dev glew-utils libjs-jquery-ui-docs 871s libtool-doc openmpi-doc proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples m4-doc 871s opencl-icd gfortran | fortran-compiler 871s Recommended packages: 871s libgl1-amber-dri javascript-common lammps-doc libtool 871s libcoarrays-openmpi-dev mesa-vulkan-drivers | vulkan-icd python3-mpi4py 871s The following NEW packages will be installed: 871s autoconf automake autopkgtest-satdep autotools-dev cpp-12 gcc-12 gcc-12-base 871s gfortran-12 libaec0 libasan8 libatomic1 libblas3 libcairo2 libcc1-0 871s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 871s libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 871s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 871s libfftw3-double3 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 871s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 871s libglx0 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-dev 871s libhwloc-plugins libhwloc15 libibverbs-dev libisl23 libitm1 libjs-jquery 871s libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev liblammps0t64 871s liblapack3 libllvm17t64 libltdl-dev libltdl7 libmpc3 libmunge2 871s libnetcdf19t64 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 libopengl0 871s libopenmpi-dev libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix-dev 871s libpmix2t64 libpnetcdf0d libproj25 libpython3.12t64 librdmacm1t64 libsz2 871s libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtk8.6 871s libubsan1 libvoro++1 libvtk9.1t64 libvulkan1 libx11-xcb1 libxcb-dri2-0 871s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 871s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 871s libxrender1 libxshmfence1 libxss1 libxxf86vm1 m4 mpi-default-bin 871s mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 871s python3-lammps x11-common zlib1g-dev 871s 0 upgraded, 111 newly installed, 0 to remove and 0 not upgraded. 871s Need to get 147 MB/147 MB of archives. 871s After this operation, 597 MB of additional disk space will be used. 871s Get:1 /tmp/autopkgtest.GBYLKL/7-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [712 B] 872s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x m4 s390x 1.4.19-4 [255 kB] 872s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x autoconf all 2.71-3 [339 kB] 872s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x autotools-dev all 20220109.1 [44.9 kB] 872s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB] 872s Get:6 http://ftpmaster.internal/ubuntu noble/universe s390x gcc-12-base s390x 12.3.0-17ubuntu1 [46.3 kB] 872s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 872s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 872s Get:9 http://ftpmaster.internal/ubuntu noble/universe s390x cpp-12 s390x 12.3.0-17ubuntu1 [8176 kB] 873s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240330-1ubuntu2 [49.8 kB] 873s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240330-1ubuntu2 [151 kB] 873s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240330-1ubuntu2 [31.1 kB] 873s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240330-1ubuntu2 [9386 B] 873s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240330-1ubuntu2 [2994 kB] 874s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240330-1ubuntu2 [1186 kB] 874s Get:16 http://ftpmaster.internal/ubuntu noble/universe s390x libgcc-12-dev s390x 12.3.0-17ubuntu1 [856 kB] 874s Get:17 http://ftpmaster.internal/ubuntu noble/universe s390x gcc-12 s390x 12.3.0-17ubuntu1 [16.2 MB] 875s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240330-1ubuntu2 [598 kB] 875s Get:19 http://ftpmaster.internal/ubuntu noble/universe s390x libgfortran-12-dev s390x 12.3.0-17ubuntu1 [517 kB] 875s Get:20 http://ftpmaster.internal/ubuntu noble/universe s390x gfortran-12 s390x 12.3.0-17ubuntu1 [8591 kB] 875s Get:21 http://ftpmaster.internal/ubuntu noble/universe s390x libaec0 s390x 1.1.2-1 [25.7 kB] 875s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 875s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 875s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 875s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 875s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 875s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-3 [589 kB] 875s Get:28 http://ftpmaster.internal/ubuntu noble/universe s390x libdouble-conversion3 s390x 3.3.0-1 [39.6 kB] 875s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-amdgpu1 s390x 2.4.120-2 [21.1 kB] 875s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-nouveau2 s390x 2.4.120-2 [18.5 kB] 875s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-radeon1 s390x 2.4.120-2 [22.7 kB] 875s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libevent-2.1-7t64 s390x 2.1.12-stable-9ubuntu2 [147 kB] 875s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libevent-extra-2.1-7t64 s390x 2.1.12-stable-9ubuntu2 [64.7 kB] 875s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-9ubuntu2 [7954 B] 875s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libevent-openssl-2.1-7t64 s390x 2.1.12-stable-9ubuntu2 [15.3 kB] 875s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libevent-dev s390x 2.1.12-stable-9ubuntu2 [278 kB] 875s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x librdmacm1t64 s390x 50.0-2build2 [74.1 kB] 875s Get:38 http://ftpmaster.internal/ubuntu noble/universe s390x libfabric1 s390x 1.17.0-3build2 [566 kB] 875s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-double3 s390x 3.3.10-1ubuntu3 [512 kB] 875s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libvulkan1 s390x 1.3.275.0-1 [155 kB] 875s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libglapi-mesa s390x 24.0.3-1ubuntu4 [69.2 kB] 875s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libllvm17t64 s390x 1:17.0.6-9build3 [31.2 MB] 876s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri3-0 s390x 1.15-1 [7270 B] 876s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libgl1-mesa-dri s390x 24.0.3-1ubuntu4 [7186 kB] 876s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libglvnd0 s390x 1.7.0-1 [106 kB] 876s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libx11-xcb1 s390x 2:1.8.7-1 [7778 B] 876s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri2-0 s390x 1.15-1 [7426 B] 876s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-glx0 s390x 1.15-1 [25.8 kB] 876s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-present0 s390x 1.15-1 [5752 B] 876s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-randr0 s390x 1.15-1 [19.0 kB] 876s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-sync1 s390x 1.15-1 [9392 B] 876s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xfixes0 s390x 1.15-1 [10.5 kB] 876s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libxfixes3 s390x 1:6.0.0-2 [10.6 kB] 876s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libxshmfence1 s390x 1.3-1build4 [5334 B] 876s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libxxf86vm1 s390x 1:1.1.4-1build3 [9900 B] 876s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libglx-mesa0 s390x 24.0.3-1ubuntu4 [182 kB] 876s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libglx0 s390x 1.7.0-1 [31.4 kB] 876s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libgl1 s390x 1.7.0-1 [137 kB] 876s Get:59 http://ftpmaster.internal/ubuntu noble/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2 [40.2 kB] 876s Get:60 http://ftpmaster.internal/ubuntu noble/universe s390x libglew2.2 s390x 2.2.0-4 [202 kB] 877s Get:61 http://ftpmaster.internal/ubuntu noble/universe s390x libsz2 s390x 1.1.2-1 [5346 B] 877s Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-3.1ubuntu4 [1436 kB] 877s Get:63 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-3.1ubuntu4 [58.0 kB] 877s Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc15 s390x 2.10.0-1 [174 kB] 877s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 877s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 877s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libjsoncpp25 s390x 1.9.5-6 [75.5 kB] 877s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x libkim-api2 s390x 2.3.0-1 [544 kB] 877s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 877s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x libnetcdf19t64 s390x 1:4.9.2-5ubuntu4 [505 kB] 877s Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x libmunge2 s390x 0.5.15-4build1 [15.6 kB] 877s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libpciaccess0 s390x 0.17-3 [18.5 kB] 877s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 877s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1 [39.1 kB] 877s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-plugins s390x 2.10.0-1 [16.1 kB] 877s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix2t64 s390x 5.0.1-4.1 [727 kB] 877s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi3t64 s390x 4.1.6-7ubuntu1 [2437 kB] 877s Get:78 http://ftpmaster.internal/ubuntu noble/universe s390x libpnetcdf0d s390x 1.12.3-2build1 [997 kB] 877s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12t64 s390x 3.12.2-5ubuntu3 [2511 kB] 877s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 877s Get:81 http://ftpmaster.internal/ubuntu noble/main s390x libogg0 s390x 1.3.5-3 [22.7 kB] 877s Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libopengl0 s390x 1.7.0-1 [45.9 kB] 877s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x proj-data all 9.4.0-1build2 [7885 kB] 877s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libproj25 s390x 9.4.0-1build2 [1410 kB] 877s Get:85 http://ftpmaster.internal/ubuntu noble/universe s390x libtbbmalloc2 s390x 2021.11.0-2ubuntu2 [68.0 kB] 877s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libtbbbind-2-5 s390x 2021.11.0-2ubuntu2 [16.7 kB] 877s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x libtbb12 s390x 2021.11.0-2ubuntu2 [118 kB] 877s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.14+dfsg-1build1 [1038 kB] 877s Get:89 http://ftpmaster.internal/ubuntu noble/main s390x libtheora0 s390x 1.1.1+dfsg.1-16.1build3 [271 kB] 877s Get:90 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 877s Get:91 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 877s Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 877s Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.14-1build1 [833 kB] 877s Get:94 http://ftpmaster.internal/ubuntu noble/universe s390x libvtk9.1t64 s390x 9.1.0+really9.1.0+dfsg2-7.1build2 [22.1 MB] 878s Get:95 http://ftpmaster.internal/ubuntu noble/universe s390x liblammps0t64 s390x 20240207+dfsg-1.1build2 [7961 kB] 878s Get:96 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-common all 4.1.6-7ubuntu1 [170 kB] 878s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libnl-3-dev s390x 3.7.0-0.3 [104 kB] 878s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libnl-route-3-dev s390x 3.7.0-0.3 [218 kB] 878s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libibverbs-dev s390x 50.0-2build2 [717 kB] 878s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libnuma-dev s390x 2.0.18-1 [38.9 kB] 878s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libltdl7 s390x 2.4.7-7 [41.6 kB] 878s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libltdl-dev s390x 2.4.7-7 [170 kB] 878s Get:103 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-dev s390x 2.10.0-1 [270 kB] 879s Get:104 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3.1ubuntu2 [904 kB] 879s Get:105 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix-dev s390x 5.0.1-4.1 [4040 kB] 879s Get:106 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-bin s390x 4.1.6-7ubuntu1 [84.5 kB] 879s Get:107 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi-dev s390x 4.1.6-7ubuntu1 [825 kB] 879s Get:108 http://ftpmaster.internal/ubuntu noble/universe s390x mpi-default-dev s390x 1.15 [3118 B] 879s Get:109 http://ftpmaster.internal/ubuntu noble/universe s390x liblammps-dev s390x 20240207+dfsg-1.1build2 [112 kB] 879s Get:110 http://ftpmaster.internal/ubuntu noble/universe s390x mpi-default-bin s390x 1.15 [2338 B] 879s Get:111 http://ftpmaster.internal/ubuntu noble/universe s390x python3-lammps s390x 20240207+dfsg-1.1build2 [70.5 kB] 880s Fetched 147 MB in 8s (18.9 MB/s) 880s Selecting previously unselected package m4. 880s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78333 files and directories currently installed.) 880s Preparing to unpack .../000-m4_1.4.19-4_s390x.deb ... 880s Unpacking m4 (1.4.19-4) ... 880s Selecting previously unselected package autoconf. 880s Preparing to unpack .../001-autoconf_2.71-3_all.deb ... 880s Unpacking autoconf (2.71-3) ... 880s Selecting previously unselected package autotools-dev. 880s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 880s Unpacking autotools-dev (20220109.1) ... 880s Selecting previously unselected package automake. 880s Preparing to unpack .../003-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 880s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 880s Selecting previously unselected package gcc-12-base:s390x. 880s Preparing to unpack .../004-gcc-12-base_12.3.0-17ubuntu1_s390x.deb ... 880s Unpacking gcc-12-base:s390x (12.3.0-17ubuntu1) ... 880s Selecting previously unselected package libisl23:s390x. 880s Preparing to unpack .../005-libisl23_0.26-3_s390x.deb ... 880s Unpacking libisl23:s390x (0.26-3) ... 880s Selecting previously unselected package libmpc3:s390x. 880s Preparing to unpack .../006-libmpc3_1.3.1-1_s390x.deb ... 880s Unpacking libmpc3:s390x (1.3.1-1) ... 880s Selecting previously unselected package cpp-12. 880s Preparing to unpack .../007-cpp-12_12.3.0-17ubuntu1_s390x.deb ... 880s Unpacking cpp-12 (12.3.0-17ubuntu1) ... 881s Selecting previously unselected package libcc1-0:s390x. 881s Preparing to unpack .../008-libcc1-0_14-20240330-1ubuntu2_s390x.deb ... 881s Unpacking libcc1-0:s390x (14-20240330-1ubuntu2) ... 881s Selecting previously unselected package libgomp1:s390x. 881s Preparing to unpack .../009-libgomp1_14-20240330-1ubuntu2_s390x.deb ... 881s Unpacking libgomp1:s390x (14-20240330-1ubuntu2) ... 881s Selecting previously unselected package libitm1:s390x. 881s Preparing to unpack .../010-libitm1_14-20240330-1ubuntu2_s390x.deb ... 881s Unpacking libitm1:s390x (14-20240330-1ubuntu2) ... 881s Selecting previously unselected package libatomic1:s390x. 881s Preparing to unpack .../011-libatomic1_14-20240330-1ubuntu2_s390x.deb ... 881s Unpacking libatomic1:s390x (14-20240330-1ubuntu2) ... 881s Selecting previously unselected package libasan8:s390x. 881s Preparing to unpack .../012-libasan8_14-20240330-1ubuntu2_s390x.deb ... 881s Unpacking libasan8:s390x (14-20240330-1ubuntu2) ... 881s Selecting previously unselected package libubsan1:s390x. 881s Preparing to unpack .../013-libubsan1_14-20240330-1ubuntu2_s390x.deb ... 881s Unpacking libubsan1:s390x (14-20240330-1ubuntu2) ... 881s Selecting previously unselected package libgcc-12-dev:s390x. 881s Preparing to unpack .../014-libgcc-12-dev_12.3.0-17ubuntu1_s390x.deb ... 881s Unpacking libgcc-12-dev:s390x (12.3.0-17ubuntu1) ... 881s Selecting previously unselected package gcc-12. 881s Preparing to unpack .../015-gcc-12_12.3.0-17ubuntu1_s390x.deb ... 881s Unpacking gcc-12 (12.3.0-17ubuntu1) ... 882s Selecting previously unselected package libgfortran5:s390x. 882s Preparing to unpack .../016-libgfortran5_14-20240330-1ubuntu2_s390x.deb ... 882s Unpacking libgfortran5:s390x (14-20240330-1ubuntu2) ... 882s Selecting previously unselected package libgfortran-12-dev:s390x. 882s Preparing to unpack .../017-libgfortran-12-dev_12.3.0-17ubuntu1_s390x.deb ... 882s Unpacking libgfortran-12-dev:s390x (12.3.0-17ubuntu1) ... 882s Selecting previously unselected package gfortran-12. 882s Preparing to unpack .../018-gfortran-12_12.3.0-17ubuntu1_s390x.deb ... 882s Unpacking gfortran-12 (12.3.0-17ubuntu1) ... 882s Selecting previously unselected package libaec0:s390x. 882s Preparing to unpack .../019-libaec0_1.1.2-1_s390x.deb ... 882s Unpacking libaec0:s390x (1.1.2-1) ... 882s Selecting previously unselected package libblas3:s390x. 882s Preparing to unpack .../020-libblas3_3.12.0-3_s390x.deb ... 882s Unpacking libblas3:s390x (3.12.0-3) ... 882s Selecting previously unselected package libpixman-1-0:s390x. 882s Preparing to unpack .../021-libpixman-1-0_0.42.2-1_s390x.deb ... 882s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 882s Selecting previously unselected package libxcb-render0:s390x. 882s Preparing to unpack .../022-libxcb-render0_1.15-1_s390x.deb ... 882s Unpacking libxcb-render0:s390x (1.15-1) ... 882s Selecting previously unselected package libxcb-shm0:s390x. 882s Preparing to unpack .../023-libxcb-shm0_1.15-1_s390x.deb ... 882s Unpacking libxcb-shm0:s390x (1.15-1) ... 882s Selecting previously unselected package libxrender1:s390x. 882s Preparing to unpack .../024-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 882s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 882s Selecting previously unselected package libcairo2:s390x. 882s Preparing to unpack .../025-libcairo2_1.18.0-3_s390x.deb ... 882s Unpacking libcairo2:s390x (1.18.0-3) ... 882s Selecting previously unselected package libdouble-conversion3:s390x. 882s Preparing to unpack .../026-libdouble-conversion3_3.3.0-1_s390x.deb ... 882s Unpacking libdouble-conversion3:s390x (3.3.0-1) ... 883s Selecting previously unselected package libdrm-amdgpu1:s390x. 883s Preparing to unpack .../027-libdrm-amdgpu1_2.4.120-2_s390x.deb ... 883s Unpacking libdrm-amdgpu1:s390x (2.4.120-2) ... 883s Selecting previously unselected package libdrm-nouveau2:s390x. 883s Preparing to unpack .../028-libdrm-nouveau2_2.4.120-2_s390x.deb ... 883s Unpacking libdrm-nouveau2:s390x (2.4.120-2) ... 883s Selecting previously unselected package libdrm-radeon1:s390x. 883s Preparing to unpack .../029-libdrm-radeon1_2.4.120-2_s390x.deb ... 883s Unpacking libdrm-radeon1:s390x (2.4.120-2) ... 883s Selecting previously unselected package libevent-2.1-7t64:s390x. 883s Preparing to unpack .../030-libevent-2.1-7t64_2.1.12-stable-9ubuntu2_s390x.deb ... 883s Unpacking libevent-2.1-7t64:s390x (2.1.12-stable-9ubuntu2) ... 883s Selecting previously unselected package libevent-extra-2.1-7t64:s390x. 883s Preparing to unpack .../031-libevent-extra-2.1-7t64_2.1.12-stable-9ubuntu2_s390x.deb ... 883s Unpacking libevent-extra-2.1-7t64:s390x (2.1.12-stable-9ubuntu2) ... 883s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 883s Preparing to unpack .../032-libevent-pthreads-2.1-7t64_2.1.12-stable-9ubuntu2_s390x.deb ... 883s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-9ubuntu2) ... 883s Selecting previously unselected package libevent-openssl-2.1-7t64:s390x. 883s Preparing to unpack .../033-libevent-openssl-2.1-7t64_2.1.12-stable-9ubuntu2_s390x.deb ... 883s Unpacking libevent-openssl-2.1-7t64:s390x (2.1.12-stable-9ubuntu2) ... 883s Selecting previously unselected package libevent-dev. 883s Preparing to unpack .../034-libevent-dev_2.1.12-stable-9ubuntu2_s390x.deb ... 883s Unpacking libevent-dev (2.1.12-stable-9ubuntu2) ... 883s Selecting previously unselected package librdmacm1t64:s390x. 883s Preparing to unpack .../035-librdmacm1t64_50.0-2build2_s390x.deb ... 883s Unpacking librdmacm1t64:s390x (50.0-2build2) ... 883s Selecting previously unselected package libfabric1:s390x. 883s Preparing to unpack .../036-libfabric1_1.17.0-3build2_s390x.deb ... 883s Unpacking libfabric1:s390x (1.17.0-3build2) ... 883s Selecting previously unselected package libfftw3-double3:s390x. 883s Preparing to unpack .../037-libfftw3-double3_3.3.10-1ubuntu3_s390x.deb ... 883s Unpacking libfftw3-double3:s390x (3.3.10-1ubuntu3) ... 883s Selecting previously unselected package libvulkan1:s390x. 883s Preparing to unpack .../038-libvulkan1_1.3.275.0-1_s390x.deb ... 883s Unpacking libvulkan1:s390x (1.3.275.0-1) ... 883s Selecting previously unselected package libglapi-mesa:s390x. 883s Preparing to unpack .../039-libglapi-mesa_24.0.3-1ubuntu4_s390x.deb ... 883s Unpacking libglapi-mesa:s390x (24.0.3-1ubuntu4) ... 883s Selecting previously unselected package libllvm17t64:s390x. 883s Preparing to unpack .../040-libllvm17t64_1%3a17.0.6-9build3_s390x.deb ... 883s Unpacking libllvm17t64:s390x (1:17.0.6-9build3) ... 884s Selecting previously unselected package libxcb-dri3-0:s390x. 884s Preparing to unpack .../041-libxcb-dri3-0_1.15-1_s390x.deb ... 884s Unpacking libxcb-dri3-0:s390x (1.15-1) ... 884s Selecting previously unselected package libgl1-mesa-dri:s390x. 884s Preparing to unpack .../042-libgl1-mesa-dri_24.0.3-1ubuntu4_s390x.deb ... 884s Unpacking libgl1-mesa-dri:s390x (24.0.3-1ubuntu4) ... 885s Selecting previously unselected package libglvnd0:s390x. 885s Preparing to unpack .../043-libglvnd0_1.7.0-1_s390x.deb ... 885s Unpacking libglvnd0:s390x (1.7.0-1) ... 885s Selecting previously unselected package libx11-xcb1:s390x. 885s Preparing to unpack .../044-libx11-xcb1_2%3a1.8.7-1_s390x.deb ... 885s Unpacking libx11-xcb1:s390x (2:1.8.7-1) ... 885s Selecting previously unselected package libxcb-dri2-0:s390x. 885s Preparing to unpack .../045-libxcb-dri2-0_1.15-1_s390x.deb ... 885s Unpacking libxcb-dri2-0:s390x (1.15-1) ... 885s Selecting previously unselected package libxcb-glx0:s390x. 885s Preparing to unpack .../046-libxcb-glx0_1.15-1_s390x.deb ... 885s Unpacking libxcb-glx0:s390x (1.15-1) ... 885s Selecting previously unselected package libxcb-present0:s390x. 885s Preparing to unpack .../047-libxcb-present0_1.15-1_s390x.deb ... 885s Unpacking libxcb-present0:s390x (1.15-1) ... 885s Selecting previously unselected package libxcb-randr0:s390x. 885s Preparing to unpack .../048-libxcb-randr0_1.15-1_s390x.deb ... 885s Unpacking libxcb-randr0:s390x (1.15-1) ... 885s Selecting previously unselected package libxcb-sync1:s390x. 885s Preparing to unpack .../049-libxcb-sync1_1.15-1_s390x.deb ... 885s Unpacking libxcb-sync1:s390x (1.15-1) ... 885s Selecting previously unselected package libxcb-xfixes0:s390x. 885s Preparing to unpack .../050-libxcb-xfixes0_1.15-1_s390x.deb ... 885s Unpacking libxcb-xfixes0:s390x (1.15-1) ... 885s Selecting previously unselected package libxfixes3:s390x. 885s Preparing to unpack .../051-libxfixes3_1%3a6.0.0-2_s390x.deb ... 885s Unpacking libxfixes3:s390x (1:6.0.0-2) ... 885s Selecting previously unselected package libxshmfence1:s390x. 885s Preparing to unpack .../052-libxshmfence1_1.3-1build4_s390x.deb ... 885s Unpacking libxshmfence1:s390x (1.3-1build4) ... 885s Selecting previously unselected package libxxf86vm1:s390x. 885s Preparing to unpack .../053-libxxf86vm1_1%3a1.1.4-1build3_s390x.deb ... 885s Unpacking libxxf86vm1:s390x (1:1.1.4-1build3) ... 885s Selecting previously unselected package libglx-mesa0:s390x. 885s Preparing to unpack .../054-libglx-mesa0_24.0.3-1ubuntu4_s390x.deb ... 885s Unpacking libglx-mesa0:s390x (24.0.3-1ubuntu4) ... 885s Selecting previously unselected package libglx0:s390x. 885s Preparing to unpack .../055-libglx0_1.7.0-1_s390x.deb ... 885s Unpacking libglx0:s390x (1.7.0-1) ... 885s Selecting previously unselected package libgl1:s390x. 885s Preparing to unpack .../056-libgl1_1.7.0-1_s390x.deb ... 885s Unpacking libgl1:s390x (1.7.0-1) ... 885s Selecting previously unselected package libgl2ps1.4. 885s Preparing to unpack .../057-libgl2ps1.4_1.4.2+dfsg1-2_s390x.deb ... 885s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 885s Selecting previously unselected package libglew2.2:s390x. 885s Preparing to unpack .../058-libglew2.2_2.2.0-4_s390x.deb ... 885s Unpacking libglew2.2:s390x (2.2.0-4) ... 885s Selecting previously unselected package libsz2:s390x. 885s Preparing to unpack .../059-libsz2_1.1.2-1_s390x.deb ... 885s Unpacking libsz2:s390x (1.1.2-1) ... 885s Selecting previously unselected package libhdf5-103-1t64:s390x. 885s Preparing to unpack .../060-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_s390x.deb ... 885s Unpacking libhdf5-103-1t64:s390x (1.10.10+repack-3.1ubuntu4) ... 885s Selecting previously unselected package libhdf5-hl-100t64:s390x. 885s Preparing to unpack .../061-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_s390x.deb ... 885s Unpacking libhdf5-hl-100t64:s390x (1.10.10+repack-3.1ubuntu4) ... 885s Selecting previously unselected package libhwloc15:s390x. 885s Preparing to unpack .../062-libhwloc15_2.10.0-1_s390x.deb ... 885s Unpacking libhwloc15:s390x (2.10.0-1) ... 885s Selecting previously unselected package libjs-jquery. 885s Preparing to unpack .../063-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 885s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 885s Selecting previously unselected package libjs-jquery-ui. 885s Preparing to unpack .../064-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 885s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 885s Selecting previously unselected package libjsoncpp25:s390x. 885s Preparing to unpack .../065-libjsoncpp25_1.9.5-6_s390x.deb ... 885s Unpacking libjsoncpp25:s390x (1.9.5-6) ... 885s Selecting previously unselected package libkim-api2:s390x. 885s Preparing to unpack .../066-libkim-api2_2.3.0-1_s390x.deb ... 885s Unpacking libkim-api2:s390x (2.3.0-1) ... 885s Selecting previously unselected package liblapack3:s390x. 885s Preparing to unpack .../067-liblapack3_3.12.0-3_s390x.deb ... 885s Unpacking liblapack3:s390x (3.12.0-3) ... 885s Selecting previously unselected package libnetcdf19t64:s390x. 885s Preparing to unpack .../068-libnetcdf19t64_1%3a4.9.2-5ubuntu4_s390x.deb ... 885s Unpacking libnetcdf19t64:s390x (1:4.9.2-5ubuntu4) ... 885s Selecting previously unselected package libmunge2:s390x. 885s Preparing to unpack .../069-libmunge2_0.5.15-4build1_s390x.deb ... 885s Unpacking libmunge2:s390x (0.5.15-4build1) ... 885s Selecting previously unselected package libpciaccess0:s390x. 885s Preparing to unpack .../070-libpciaccess0_0.17-3_s390x.deb ... 885s Unpacking libpciaccess0:s390x (0.17-3) ... 885s Selecting previously unselected package libxnvctrl0:s390x. 885s Preparing to unpack .../071-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 885s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 885s Selecting previously unselected package ocl-icd-libopencl1:s390x. 885s Preparing to unpack .../072-ocl-icd-libopencl1_2.3.2-1_s390x.deb ... 885s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1) ... 885s Selecting previously unselected package libhwloc-plugins:s390x. 885s Preparing to unpack .../073-libhwloc-plugins_2.10.0-1_s390x.deb ... 885s Unpacking libhwloc-plugins:s390x (2.10.0-1) ... 885s Selecting previously unselected package libpmix2t64:s390x. 885s Preparing to unpack .../074-libpmix2t64_5.0.1-4.1_s390x.deb ... 885s Unpacking libpmix2t64:s390x (5.0.1-4.1) ... 886s Selecting previously unselected package libopenmpi3t64:s390x. 886s Preparing to unpack .../075-libopenmpi3t64_4.1.6-7ubuntu1_s390x.deb ... 886s Unpacking libopenmpi3t64:s390x (4.1.6-7ubuntu1) ... 886s Selecting previously unselected package libpnetcdf0d:s390x. 886s Preparing to unpack .../076-libpnetcdf0d_1.12.3-2build1_s390x.deb ... 886s Unpacking libpnetcdf0d:s390x (1.12.3-2build1) ... 886s Selecting previously unselected package libpython3.12t64:s390x. 886s Preparing to unpack .../077-libpython3.12t64_3.12.2-5ubuntu3_s390x.deb ... 886s Unpacking libpython3.12t64:s390x (3.12.2-5ubuntu3) ... 886s Selecting previously unselected package libvoro++1. 886s Preparing to unpack .../078-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 886s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 886s Selecting previously unselected package libogg0:s390x. 886s Preparing to unpack .../079-libogg0_1.3.5-3_s390x.deb ... 886s Unpacking libogg0:s390x (1.3.5-3) ... 886s Selecting previously unselected package libopengl0:s390x. 886s Preparing to unpack .../080-libopengl0_1.7.0-1_s390x.deb ... 886s Unpacking libopengl0:s390x (1.7.0-1) ... 886s Selecting previously unselected package proj-data. 886s Preparing to unpack .../081-proj-data_9.4.0-1build2_all.deb ... 886s Unpacking proj-data (9.4.0-1build2) ... 886s Selecting previously unselected package libproj25:s390x. 886s Preparing to unpack .../082-libproj25_9.4.0-1build2_s390x.deb ... 886s Unpacking libproj25:s390x (9.4.0-1build2) ... 886s Selecting previously unselected package libtbbmalloc2:s390x. 886s Preparing to unpack .../083-libtbbmalloc2_2021.11.0-2ubuntu2_s390x.deb ... 886s Unpacking libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 886s Selecting previously unselected package libtbbbind-2-5:s390x. 886s Preparing to unpack .../084-libtbbbind-2-5_2021.11.0-2ubuntu2_s390x.deb ... 886s Unpacking libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 886s Selecting previously unselected package libtbb12:s390x. 886s Preparing to unpack .../085-libtbb12_2021.11.0-2ubuntu2_s390x.deb ... 886s Unpacking libtbb12:s390x (2021.11.0-2ubuntu2) ... 886s Selecting previously unselected package libtcl8.6:s390x. 886s Preparing to unpack .../086-libtcl8.6_8.6.14+dfsg-1build1_s390x.deb ... 886s Unpacking libtcl8.6:s390x (8.6.14+dfsg-1build1) ... 886s Selecting previously unselected package libtheora0:s390x. 886s Preparing to unpack .../087-libtheora0_1.1.1+dfsg.1-16.1build3_s390x.deb ... 886s Unpacking libtheora0:s390x (1.1.1+dfsg.1-16.1build3) ... 886s Selecting previously unselected package libxft2:s390x. 886s Preparing to unpack .../088-libxft2_2.3.6-1_s390x.deb ... 886s Unpacking libxft2:s390x (2.3.6-1) ... 886s Selecting previously unselected package x11-common. 886s Preparing to unpack .../089-x11-common_1%3a7.7+23ubuntu2_all.deb ... 886s Unpacking x11-common (1:7.7+23ubuntu2) ... 886s Selecting previously unselected package libxss1:s390x. 886s Preparing to unpack .../090-libxss1_1%3a1.2.3-1build2_s390x.deb ... 886s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 886s Selecting previously unselected package libtk8.6:s390x. 886s Preparing to unpack .../091-libtk8.6_8.6.14-1build1_s390x.deb ... 886s Unpacking libtk8.6:s390x (8.6.14-1build1) ... 886s Selecting previously unselected package libvtk9.1t64:s390x. 886s Preparing to unpack .../092-libvtk9.1t64_9.1.0+really9.1.0+dfsg2-7.1build2_s390x.deb ... 886s Unpacking libvtk9.1t64:s390x (9.1.0+really9.1.0+dfsg2-7.1build2) ... 887s Selecting previously unselected package liblammps0t64:s390x. 887s Preparing to unpack .../093-liblammps0t64_20240207+dfsg-1.1build2_s390x.deb ... 887s Unpacking liblammps0t64:s390x (20240207+dfsg-1.1build2) ... 888s Selecting previously unselected package openmpi-common. 888s Preparing to unpack .../094-openmpi-common_4.1.6-7ubuntu1_all.deb ... 888s Unpacking openmpi-common (4.1.6-7ubuntu1) ... 888s Selecting previously unselected package libnl-3-dev:s390x. 888s Preparing to unpack .../095-libnl-3-dev_3.7.0-0.3_s390x.deb ... 888s Unpacking libnl-3-dev:s390x (3.7.0-0.3) ... 888s Selecting previously unselected package libnl-route-3-dev:s390x. 888s Preparing to unpack .../096-libnl-route-3-dev_3.7.0-0.3_s390x.deb ... 888s Unpacking libnl-route-3-dev:s390x (3.7.0-0.3) ... 888s Selecting previously unselected package libibverbs-dev:s390x. 888s Preparing to unpack .../097-libibverbs-dev_50.0-2build2_s390x.deb ... 888s Unpacking libibverbs-dev:s390x (50.0-2build2) ... 888s Selecting previously unselected package libnuma-dev:s390x. 888s Preparing to unpack .../098-libnuma-dev_2.0.18-1_s390x.deb ... 888s Unpacking libnuma-dev:s390x (2.0.18-1) ... 888s Selecting previously unselected package libltdl7:s390x. 888s Preparing to unpack .../099-libltdl7_2.4.7-7_s390x.deb ... 888s Unpacking libltdl7:s390x (2.4.7-7) ... 888s Selecting previously unselected package libltdl-dev:s390x. 888s Preparing to unpack .../100-libltdl-dev_2.4.7-7_s390x.deb ... 888s Unpacking libltdl-dev:s390x (2.4.7-7) ... 888s Selecting previously unselected package libhwloc-dev:s390x. 888s Preparing to unpack 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[----------------------- 939s LAMMPS (7 Feb 2024 - Update 1) 939s 939s Python output: 939s Natoms, mass, x[0][0] coord = 4000 1.0 0.2727243714666721 939s Temperature from compute = 0.750609109548371 939s Energy from equal-style variable = -5.748192616533703 939s Velocity component from atom-style variable = -0.008231833025308041 939s Volume from get_thermo = 4738.213693437576 939s Natoms from get_natoms = 4000 939s Global coords from gather_atoms = 0.2727243714666721 0.1442606170751015 0.02741951954247279 939s Changed x[0][0] via scatter_atoms = 1.272724371466672 939s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 939s using 1 OpenMP thread(s) per MPI task 939s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 939s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 939s 1 by 1 by 1 MPI processor grid 939s Created 4000 atoms 939s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 939s create_atoms CPU = 0.001 seconds 939s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 939s Neighbor list info ... 939s update: every = 20 steps, delay = 0 steps, check = no 939s max neighbors/atom: 2000, page size: 100000 939s master list distance cutoff = 2.8 939s ghost atom cutoff = 2.8 939s binsize = 1.4, bins = 12 12 12 939s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 939s (1) pair lj/cut, perpetual 939s attributes: half, newton on 939s pair build: half/bin/atomonly/newton 939s stencil: half/bin/3d 939s bin: standard 939s Setting up Verlet run ... 939s Unit style : lj 939s Current step : 0 939s Time step : 0.005 939s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 939s Step Temp E_pair E_mol TotEng Press 939s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 939s 100 0.75060911 -5.7481926 0 -4.6225604 0.24772341 939s Loop time of 0.440859 on 1 procs for 100 steps with 4000 atoms 939s 939s Performance: 97990.480 tau/day, 226.830 timesteps/s, 907.319 katom-step/s 939s 97.7% CPU use with 1 MPI tasks x 1 OpenMP threads 939s 939s MPI task timing breakdown: 939s Section | min time | avg time | max time |%varavg| %total 939s --------------------------------------------------------------- 939s Pair | 0.39041 | 0.39041 | 0.39041 | 0.0 | 88.56 939s Neigh | 0.037304 | 0.037304 | 0.037304 | 0.0 | 8.46 939s Comm | 0.0061217 | 0.0061217 | 0.0061217 | 0.0 | 1.39 939s Output | 5.4224e-05 | 5.4224e-05 | 5.4224e-05 | 0.0 | 0.01 939s Modify | 0.0055602 | 0.0055602 | 0.0055602 | 0.0 | 1.26 939s Other | | 0.00141 | | | 0.32 939s 939s Nlocal: 4000 ave 4000 max 4000 min 939s Histogram: 1 0 0 0 0 0 0 0 0 0 939s Nghost: 5770 ave 5770 max 5770 min 939s Histogram: 1 0 0 0 0 0 0 0 0 0 939s Neighs: 150293 ave 150293 max 150293 min 939s Histogram: 1 0 0 0 0 0 0 0 0 0 939s 939s Total # of neighbors = 150293 939s Ave neighs/atom = 37.57325 939s Neighbor list builds = 5 939s Dangerous builds not checked 939s Total wall time: 0:00:00 939s autopkgtest [20:15:07]: test command1: -----------------------] 940s command1 PASS 940s autopkgtest [20:15:08]: test command1: - - - - - - - - - - results - - - - - - - - - - 940s autopkgtest [20:15:08]: @@@@@@@@@@@@@@@@@@@@ summary 940s crack PASS 940s dipole PASS 940s ellipse PASS 940s flow PASS 940s friction PASS 940s hugo PASS 940s command1 PASS 959s Creating nova instance adt-noble-s390x-lammps-20240408-195928-juju-7f2275-prod-proposed-migration-environment-2-f02c7374-2d92-430c-ae93-cb0b46c38aea from image adt/ubuntu-noble-s390x-server-20240408.img (UUID ba451603-1cf6-4234-8732-73f1ede19770)... 959s Creating nova instance adt-noble-s390x-lammps-20240408-195928-juju-7f2275-prod-proposed-migration-environment-2-f02c7374-2d92-430c-ae93-cb0b46c38aea from image adt/ubuntu-noble-s390x-server-20240408.img (UUID ba451603-1cf6-4234-8732-73f1ede19770)...