0s autopkgtest [18:56:57]: starting date and time: 2024-03-20 18:56:57+0000 0s autopkgtest [18:56:57]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [18:56:57]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.l78ksv5n/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:pnetcdf --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pnetcdf/1.12.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-19.secgroup --name adt-noble-s390x-lammps-20240320-185657-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 138s autopkgtest [18:59:15]: testbed dpkg architecture: s390x 139s autopkgtest [18:59:16]: testbed apt version: 2.7.12 139s autopkgtest [18:59:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 140s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 140s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [501 kB] 141s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3809 kB] 141s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 141s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 141s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [679 kB] 141s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 141s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 141s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 141s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4058 kB] 142s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 142s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [45.3 kB] 142s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 144s Fetched 9282 kB in 3s (3040 kB/s) 144s Reading package lists... 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Calculating upgrade... 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 148s Unknown architecture, assuming PC-style ttyS0 148s sh: Attempting to set up Debian/Ubuntu apt sources automatically 148s sh: Distribution appears to be Ubuntu 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 149s eatmydata is already the newest version (131-1). 149s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 150s dbus is already the newest version (1.14.10-4ubuntu1). 150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s rng-tools-debian is already the newest version (2.4). 150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s The following packages will be REMOVED: 150s cloud-init* python3-configobj* python3-debconf* 151s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 151s After this operation, 3252 kB disk space will be freed. 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 151s Removing cloud-init (24.1.1-0ubuntu1) ... 151s Removing python3-configobj (5.0.8-3) ... 151s Removing python3-debconf (1.5.86) ... 151s Processing triggers for man-db (2.12.0-3) ... 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51782 files and directories currently installed.) 152s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 152s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 152s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 152s invoke-rc.d: policy-rc.d denied execution of try-restart. 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 153s linux-generic is already the newest version (6.8.0-11.11+1). 153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 153s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 153s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 153s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 155s Reading package lists... 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Calculating upgrade... 155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s Reading package lists... 156s Building dependency tree... 156s Reading state information... 156s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s autopkgtest [18:59:33]: rebooting testbed after setup commands that affected boot 171s autopkgtest [18:59:48]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 175s autopkgtest [18:59:52]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 184s Get:1 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1 (dsc) [3139 B] 184s Get:2 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1 (tar) [153 MB] 184s Get:3 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1 (diff) [16.8 kB] 184s gpgv: Signature made Sun Feb 18 15:30:49 2024 UTC 184s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 184s gpgv: issuer "dparsons@debian.org" 184s gpgv: Can't check signature: No public key 184s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-1.dsc: no acceptable signature found 201s autopkgtest [19:00:18]: testing package lammps version 20240207+dfsg-1 202s autopkgtest [19:00:19]: build not needed 245s autopkgtest [19:01:02]: test crack: preparing testbed 249s Reading package lists... 249s Building dependency tree... 249s Reading state information... 249s Starting pkgProblemResolver with broken count: 0 249s Starting 2 pkgProblemResolver with broken count: 0 249s Done 250s The following additional packages will be installed: 250s cpp-12 fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-12 250s gcc-12-base gfortran-12 lammps lammps-data libaec0 libasan8 libatomic1 250s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdeflate0 250s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 250s libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfontconfig1 250s libfreetype6 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 250s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 250s libglx0 libgomp1 libhdf5-103-1 libhdf5-hl-100 libhwloc-plugins libhwloc15 250s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkim-api2 250s liblammps0 liblapack3 libllvm17 libmpc3 libmunge2 libnetcdf19 libnsl-dev 250s libogg0 libopengl0 libopenmpi3 libpciaccess0 libpixman-1-0 libpmix2 250s libpnetcdf0d libproj25 libpython3.12 librdmacm1 libsharpyuv0 libsz2 libtbb12 250s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtirpc-dev 250s libtk8.6 libubsan1 libvoro++1 libvtk9.1 libvulkan1 libwebp7 libx11-xcb1 250s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 250s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 250s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev 250s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 250s rpcsvc-proto x11-common 250s Suggested packages: 250s gcc-12-locales cpp-12-doc gcc-12-multilib gcc-12-doc gfortran-12-multilib 250s gfortran-12-doc libcoarrays-dev openkim-models glibc-doc manpages-dev 250s libfftw3-bin libfftw3-dev glew-utils proj-bin tcl8.6 tk8.6 vtk9-doc 250s vtk9-examples opencl-icd gfortran | fortran-compiler 250s Recommended packages: 250s lammps-doc manpages manpages-dev libc-devtools libgl1-amber-dri 250s mesa-vulkan-drivers | vulkan-icd 250s The following NEW packages will be installed: 250s autopkgtest-satdep cpp-12 fontconfig-config fonts-dejavu-core 250s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 lammps lammps-data libaec0 250s libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 250s libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 250s libdrm-nouveau2 libdrm-radeon1 libevent-pthreads-2.1-7 libfabric1 250s libfftw3-double3 libfontconfig1 libfreetype6 libgcc-12-dev 250s libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 250s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 250s libhdf5-103-1 libhdf5-hl-100 libhwloc-plugins libhwloc15 libisl23 libitm1 250s libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkim-api2 liblammps0 250s liblapack3 libllvm17 libmpc3 libmunge2 libnetcdf19 libnsl-dev libogg0 250s libopengl0 libopenmpi3 libpciaccess0 libpixman-1-0 libpmix2 libpnetcdf0d 250s libproj25 libpython3.12 librdmacm1 libsharpyuv0 libsz2 libtbb12 250s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtirpc-dev 250s libtk8.6 libubsan1 libvoro++1 libvtk9.1 libvulkan1 libwebp7 libx11-xcb1 250s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 250s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 250s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev 250s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 250s rpcsvc-proto x11-common 250s 0 upgraded, 109 newly installed, 0 to remove and 0 not upgraded. 250s Need to get 153 MB/153 MB of archives. 250s After this operation, 636 MB of additional disk space will be used. 250s Get:1 /tmp/autopkgtest.XBSDBP/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 250s Get:2 http://ftpmaster.internal/ubuntu noble/universe s390x gcc-12-base s390x 12.3.0-15ubuntu1 [45.5 kB] 250s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 250s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 250s Get:5 http://ftpmaster.internal/ubuntu noble/universe s390x cpp-12 s390x 12.3.0-15ubuntu1 [8176 kB] 251s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 251s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 251s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 251s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 251s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 251s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 251s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 251s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 251s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 251s Get:15 http://ftpmaster.internal/ubuntu noble/universe s390x libgcc-12-dev s390x 12.3.0-15ubuntu1 [857 kB] 251s Get:16 http://ftpmaster.internal/ubuntu noble/universe s390x gcc-12 s390x 12.3.0-15ubuntu1 [16.2 MB] 251s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 251s Get:18 http://ftpmaster.internal/ubuntu noble/universe s390x libgfortran-12-dev s390x 12.3.0-15ubuntu1 [517 kB] 251s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 251s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 251s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 251s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 251s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 251s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 251s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 251s Get:26 http://ftpmaster.internal/ubuntu noble/universe s390x gfortran-12 s390x 12.3.0-15ubuntu1 [8590 kB] 252s Get:27 http://ftpmaster.internal/ubuntu noble/universe s390x lammps-data all 20240207+dfsg-1 [9700 kB] 252s Get:28 http://ftpmaster.internal/ubuntu noble/universe s390x libaec0 s390x 1.1.2-1 [25.7 kB] 252s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 252s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 252s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 252s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 252s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 252s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 252s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 252s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 252s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 252s Get:38 http://ftpmaster.internal/ubuntu noble/universe s390x libdouble-conversion3 s390x 3.3.0-1 [39.6 kB] 252s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-amdgpu1 s390x 2.4.120-2 [21.1 kB] 252s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-nouveau2 s390x 2.4.120-2 [18.5 kB] 252s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-radeon1 s390x 2.4.120-2 [22.7 kB] 252s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libevent-pthreads-2.1-7 s390x 2.1.12-stable-9 [7692 B] 252s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x librdmacm1 s390x 50.0-1 [73.9 kB] 252s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x libfabric1 s390x 1.17.0-3 [513 kB] 252s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-double3 s390x 3.3.10-1ubuntu1 [465 kB] 252s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libvulkan1 s390x 1.3.275.0-1 [155 kB] 252s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libglapi-mesa s390x 24.0.1-1ubuntu1 [68.7 kB] 252s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libllvm17 s390x 1:17.0.6-5build1 [31.2 MB] 253s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri3-0 s390x 1.15-1 [7270 B] 253s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libgl1-mesa-dri s390x 24.0.1-1ubuntu1 [7184 kB] 253s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libglvnd0 s390x 1.7.0-1 [106 kB] 253s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libx11-xcb1 s390x 2:1.8.7-1 [7778 B] 253s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri2-0 s390x 1.15-1 [7426 B] 253s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-glx0 s390x 1.15-1 [25.8 kB] 253s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-present0 s390x 1.15-1 [5752 B] 253s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-randr0 s390x 1.15-1 [19.0 kB] 253s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-sync1 s390x 1.15-1 [9392 B] 253s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xfixes0 s390x 1.15-1 [10.5 kB] 253s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libxfixes3 s390x 1:6.0.0-2 [10.6 kB] 253s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libxshmfence1 s390x 1.3-1build4 [5334 B] 253s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libxxf86vm1 s390x 1:1.1.4-1build3 [9900 B] 253s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libglx-mesa0 s390x 24.0.1-1ubuntu1 [182 kB] 253s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libglx0 s390x 1.7.0-1 [31.4 kB] 253s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libgl1 s390x 1.7.0-1 [137 kB] 253s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2 [40.2 kB] 253s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x libglew2.2 s390x 2.2.0-4 [202 kB] 253s Get:67 http://ftpmaster.internal/ubuntu noble/universe s390x libsz2 s390x 1.1.2-1 [5346 B] 253s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-103-1 s390x 1.10.10+repack-3ubuntu1 [1425 kB] 253s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-100 s390x 1.10.10+repack-3ubuntu1 [57.5 kB] 253s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc15 s390x 2.10.0-1 [174 kB] 253s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 253s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 253s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libjsoncpp25 s390x 1.9.5-6 [75.5 kB] 253s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x libkim-api2 s390x 2.3.0-1 [544 kB] 253s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 253s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x libnetcdf19 s390x 1:4.9.2-3ubuntu1 [506 kB] 253s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x libmunge2 s390x 0.5.15-3ubuntu1 [17.3 kB] 253s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libpciaccess0 s390x 0.17-3 [18.5 kB] 253s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu1 [11.7 kB] 253s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1 [39.1 kB] 253s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-plugins s390x 2.10.0-1 [16.1 kB] 253s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix2 s390x 5.0.1-4 [722 kB] 253s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi3 s390x 4.1.6-5ubuntu1 [3024 kB] 253s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libpnetcdf0d s390x 1.12.3-2 [820 kB] 253s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12 s390x 3.12.2-1 [2561 kB] 253s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 253s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libogg0 s390x 1.3.5-3 [22.7 kB] 253s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libopengl0 s390x 1.7.0-1 [45.9 kB] 253s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x proj-data all 9.3.1-1 [7867 kB] 254s Get:90 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 254s Get:91 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 254s Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 254s Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 254s Get:94 http://ftpmaster.internal/ubuntu noble/universe s390x libproj25 s390x 9.3.1-1 [1368 kB] 254s Get:95 http://ftpmaster.internal/ubuntu noble/universe s390x libtbbmalloc2 s390x 2021.11.0-2ubuntu2 [68.0 kB] 254s Get:96 http://ftpmaster.internal/ubuntu noble/universe s390x libtbbbind-2-5 s390x 2021.11.0-2ubuntu2 [16.7 kB] 254s Get:97 http://ftpmaster.internal/ubuntu noble/universe s390x libtbb12 s390x 2021.11.0-2ubuntu2 [118 kB] 254s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 254s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libtheora0 s390x 1.1.1+dfsg.1-16.1 [262 kB] 254s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 254s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 254s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 254s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 254s Get:104 http://ftpmaster.internal/ubuntu noble/universe s390x libvtk9.1 s390x 9.1.0+really9.1.0+dfsg2-7build1 [22.1 MB] 258s Get:105 http://ftpmaster.internal/ubuntu noble/universe s390x liblammps0 s390x 20240207+dfsg-1 [7953 kB] 258s Get:106 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-common all 4.1.6-5ubuntu1 [178 kB] 258s Get:107 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-bin s390x 4.1.6-5ubuntu1 [92.5 kB] 258s Get:108 http://ftpmaster.internal/ubuntu noble/universe s390x mpi-default-bin s390x 1.15 [2338 B] 258s Get:109 http://ftpmaster.internal/ubuntu noble/universe s390x lammps s390x 20240207+dfsg-1 [15.2 kB] 259s Fetched 153 MB in 8s (18.1 MB/s) 259s Selecting previously unselected package gcc-12-base:s390x. 259s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51727 files and directories currently installed.) 259s Preparing to unpack .../000-gcc-12-base_12.3.0-15ubuntu1_s390x.deb ... 259s Unpacking gcc-12-base:s390x (12.3.0-15ubuntu1) ... 259s Selecting previously unselected package libisl23:s390x. 259s Preparing to unpack .../001-libisl23_0.26-3_s390x.deb ... 259s Unpacking libisl23:s390x (0.26-3) ... 259s Selecting previously unselected package libmpc3:s390x. 259s Preparing to unpack .../002-libmpc3_1.3.1-1_s390x.deb ... 259s Unpacking libmpc3:s390x (1.3.1-1) ... 259s Selecting previously unselected package cpp-12. 259s Preparing to unpack .../003-cpp-12_12.3.0-15ubuntu1_s390x.deb ... 259s Unpacking cpp-12 (12.3.0-15ubuntu1) ... 259s Selecting previously unselected package fonts-dejavu-mono. 259s Preparing to unpack .../004-fonts-dejavu-mono_2.37-8_all.deb ... 259s Unpacking fonts-dejavu-mono (2.37-8) ... 259s Selecting previously unselected package fonts-dejavu-core. 259s Preparing to unpack .../005-fonts-dejavu-core_2.37-8_all.deb ... 259s Unpacking fonts-dejavu-core (2.37-8) ... 259s Selecting previously unselected package fontconfig-config. 259s Preparing to unpack .../006-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 259s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 259s Selecting previously unselected package libcc1-0:s390x. 259s Preparing to unpack .../007-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 259s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 259s Selecting previously unselected package libgomp1:s390x. 259s Preparing to unpack .../008-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 259s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 259s Selecting previously unselected package libitm1:s390x. 259s Preparing to unpack .../009-libitm1_14-20240303-1ubuntu1_s390x.deb ... 259s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 259s Selecting previously unselected package libatomic1:s390x. 259s Preparing to unpack .../010-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 259s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 259s Selecting previously unselected package libasan8:s390x. 259s Preparing to unpack .../011-libasan8_14-20240303-1ubuntu1_s390x.deb ... 259s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 259s Selecting previously unselected package libubsan1:s390x. 259s Preparing to unpack .../012-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 259s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 259s Selecting previously unselected package libgcc-12-dev:s390x. 259s Preparing to unpack .../013-libgcc-12-dev_12.3.0-15ubuntu1_s390x.deb ... 259s Unpacking libgcc-12-dev:s390x (12.3.0-15ubuntu1) ... 259s Selecting previously unselected package gcc-12. 259s Preparing to unpack .../014-gcc-12_12.3.0-15ubuntu1_s390x.deb ... 259s Unpacking gcc-12 (12.3.0-15ubuntu1) ... 260s Selecting previously unselected package libgfortran5:s390x. 260s Preparing to unpack .../015-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 260s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 260s Selecting previously unselected package libgfortran-12-dev:s390x. 260s Preparing to unpack .../016-libgfortran-12-dev_12.3.0-15ubuntu1_s390x.deb ... 260s Unpacking libgfortran-12-dev:s390x (12.3.0-15ubuntu1) ... 260s Selecting previously unselected package libc-dev-bin. 260s Preparing to unpack .../017-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 260s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 260s Selecting previously unselected package linux-libc-dev:s390x. 260s Preparing to unpack .../018-linux-libc-dev_6.8.0-11.11_s390x.deb ... 260s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 260s Selecting previously unselected package libcrypt-dev:s390x. 260s Preparing to unpack .../019-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 260s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 260s Selecting previously unselected package libtirpc-dev:s390x. 260s Preparing to unpack .../020-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 260s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 260s Selecting previously unselected package libnsl-dev:s390x. 260s Preparing to unpack .../021-libnsl-dev_1.3.0-3_s390x.deb ... 260s Unpacking libnsl-dev:s390x (1.3.0-3) ... 260s Selecting previously unselected package rpcsvc-proto. 260s Preparing to unpack .../022-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 260s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 260s Selecting previously unselected package libc6-dev:s390x. 260s Preparing to unpack .../023-libc6-dev_2.39-0ubuntu2_s390x.deb ... 260s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 260s Selecting previously unselected package gfortran-12. 260s Preparing to unpack .../024-gfortran-12_12.3.0-15ubuntu1_s390x.deb ... 260s Unpacking gfortran-12 (12.3.0-15ubuntu1) ... 260s Selecting previously unselected package lammps-data. 260s Preparing to unpack .../025-lammps-data_20240207+dfsg-1_all.deb ... 260s Unpacking lammps-data (20240207+dfsg-1) ... 261s Selecting previously unselected package libaec0:s390x. 261s Preparing to unpack .../026-libaec0_1.1.2-1_s390x.deb ... 261s Unpacking libaec0:s390x (1.1.2-1) ... 261s Selecting previously unselected package libblas3:s390x. 261s Preparing to unpack .../027-libblas3_3.12.0-3_s390x.deb ... 261s Unpacking libblas3:s390x (3.12.0-3) ... 261s Selecting previously unselected package libfreetype6:s390x. 261s Preparing to unpack .../028-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 261s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 261s Selecting previously unselected package libfontconfig1:s390x. 261s Preparing to unpack .../029-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 261s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 261s Selecting previously unselected package libpixman-1-0:s390x. 261s Preparing to unpack .../030-libpixman-1-0_0.42.2-1_s390x.deb ... 261s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 261s Selecting previously unselected package libxcb-render0:s390x. 261s Preparing to unpack .../031-libxcb-render0_1.15-1_s390x.deb ... 261s Unpacking libxcb-render0:s390x (1.15-1) ... 261s Selecting previously unselected package libxcb-shm0:s390x. 261s Preparing to unpack .../032-libxcb-shm0_1.15-1_s390x.deb ... 261s Unpacking libxcb-shm0:s390x (1.15-1) ... 261s Selecting previously unselected package libxrender1:s390x. 261s Preparing to unpack .../033-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 261s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 261s Selecting previously unselected package libcairo2:s390x. 261s Preparing to unpack .../034-libcairo2_1.18.0-1_s390x.deb ... 261s Unpacking libcairo2:s390x (1.18.0-1) ... 261s Selecting previously unselected package libdeflate0:s390x. 261s Preparing to unpack .../035-libdeflate0_1.19-1_s390x.deb ... 261s Unpacking libdeflate0:s390x (1.19-1) ... 261s Selecting previously unselected package libdouble-conversion3:s390x. 261s Preparing to unpack .../036-libdouble-conversion3_3.3.0-1_s390x.deb ... 261s Unpacking libdouble-conversion3:s390x (3.3.0-1) ... 261s Selecting previously unselected package libdrm-amdgpu1:s390x. 261s Preparing to unpack .../037-libdrm-amdgpu1_2.4.120-2_s390x.deb ... 261s Unpacking libdrm-amdgpu1:s390x (2.4.120-2) ... 261s Selecting previously unselected package libdrm-nouveau2:s390x. 261s Preparing to unpack .../038-libdrm-nouveau2_2.4.120-2_s390x.deb ... 261s Unpacking libdrm-nouveau2:s390x (2.4.120-2) ... 261s Selecting previously unselected package libdrm-radeon1:s390x. 261s Preparing to unpack .../039-libdrm-radeon1_2.4.120-2_s390x.deb ... 261s Unpacking libdrm-radeon1:s390x (2.4.120-2) ... 261s Selecting previously unselected package libevent-pthreads-2.1-7:s390x. 261s Preparing to unpack .../040-libevent-pthreads-2.1-7_2.1.12-stable-9_s390x.deb ... 261s Unpacking libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ... 261s Selecting previously unselected package librdmacm1:s390x. 261s Preparing to unpack .../041-librdmacm1_50.0-1_s390x.deb ... 261s Unpacking librdmacm1:s390x (50.0-1) ... 261s Selecting previously unselected package libfabric1:s390x. 261s Preparing to unpack .../042-libfabric1_1.17.0-3_s390x.deb ... 261s Unpacking libfabric1:s390x (1.17.0-3) ... 261s Selecting previously unselected package libfftw3-double3:s390x. 261s Preparing to unpack .../043-libfftw3-double3_3.3.10-1ubuntu1_s390x.deb ... 261s Unpacking libfftw3-double3:s390x (3.3.10-1ubuntu1) ... 261s Selecting previously unselected package libvulkan1:s390x. 261s Preparing to unpack .../044-libvulkan1_1.3.275.0-1_s390x.deb ... 261s Unpacking libvulkan1:s390x (1.3.275.0-1) ... 261s Selecting previously unselected package libglapi-mesa:s390x. 261s Preparing to unpack .../045-libglapi-mesa_24.0.1-1ubuntu1_s390x.deb ... 261s Unpacking libglapi-mesa:s390x (24.0.1-1ubuntu1) ... 261s Selecting previously unselected package libllvm17:s390x. 261s Preparing to unpack .../046-libllvm17_1%3a17.0.6-5build1_s390x.deb ... 261s Unpacking libllvm17:s390x (1:17.0.6-5build1) ... 262s Selecting previously unselected package libxcb-dri3-0:s390x. 262s Preparing to unpack .../047-libxcb-dri3-0_1.15-1_s390x.deb ... 262s Unpacking libxcb-dri3-0:s390x (1.15-1) ... 262s Selecting previously unselected package libgl1-mesa-dri:s390x. 262s Preparing to unpack .../048-libgl1-mesa-dri_24.0.1-1ubuntu1_s390x.deb ... 262s Unpacking libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ... 262s Selecting previously unselected package libglvnd0:s390x. 262s Preparing to unpack .../049-libglvnd0_1.7.0-1_s390x.deb ... 262s Unpacking libglvnd0:s390x (1.7.0-1) ... 262s Selecting previously unselected package libx11-xcb1:s390x. 262s Preparing to unpack .../050-libx11-xcb1_2%3a1.8.7-1_s390x.deb ... 262s Unpacking libx11-xcb1:s390x (2:1.8.7-1) ... 262s Selecting previously unselected package libxcb-dri2-0:s390x. 262s Preparing to unpack .../051-libxcb-dri2-0_1.15-1_s390x.deb ... 262s Unpacking libxcb-dri2-0:s390x (1.15-1) ... 262s Selecting previously unselected package libxcb-glx0:s390x. 262s Preparing to unpack .../052-libxcb-glx0_1.15-1_s390x.deb ... 262s Unpacking libxcb-glx0:s390x (1.15-1) ... 262s Selecting previously unselected package libxcb-present0:s390x. 262s Preparing to unpack .../053-libxcb-present0_1.15-1_s390x.deb ... 262s Unpacking libxcb-present0:s390x (1.15-1) ... 262s Selecting previously unselected package libxcb-randr0:s390x. 262s Preparing to unpack .../054-libxcb-randr0_1.15-1_s390x.deb ... 262s Unpacking libxcb-randr0:s390x (1.15-1) ... 262s Selecting previously unselected package libxcb-sync1:s390x. 262s Preparing to unpack .../055-libxcb-sync1_1.15-1_s390x.deb ... 262s Unpacking libxcb-sync1:s390x (1.15-1) ... 262s Selecting previously unselected package libxcb-xfixes0:s390x. 262s Preparing to unpack .../056-libxcb-xfixes0_1.15-1_s390x.deb ... 262s Unpacking libxcb-xfixes0:s390x (1.15-1) ... 262s Selecting previously unselected package libxfixes3:s390x. 262s Preparing to unpack .../057-libxfixes3_1%3a6.0.0-2_s390x.deb ... 262s Unpacking libxfixes3:s390x (1:6.0.0-2) ... 262s Selecting previously unselected package libxshmfence1:s390x. 262s Preparing to unpack .../058-libxshmfence1_1.3-1build4_s390x.deb ... 262s Unpacking libxshmfence1:s390x (1.3-1build4) ... 263s Selecting previously unselected package libxxf86vm1:s390x. 263s Preparing to unpack .../059-libxxf86vm1_1%3a1.1.4-1build3_s390x.deb ... 263s Unpacking libxxf86vm1:s390x (1:1.1.4-1build3) ... 263s Selecting previously unselected package libglx-mesa0:s390x. 263s Preparing to unpack .../060-libglx-mesa0_24.0.1-1ubuntu1_s390x.deb ... 263s Unpacking libglx-mesa0:s390x (24.0.1-1ubuntu1) ... 263s Selecting previously unselected package libglx0:s390x. 263s Preparing to unpack .../061-libglx0_1.7.0-1_s390x.deb ... 263s Unpacking libglx0:s390x (1.7.0-1) ... 263s Selecting previously unselected package libgl1:s390x. 263s Preparing to unpack .../062-libgl1_1.7.0-1_s390x.deb ... 263s Unpacking libgl1:s390x (1.7.0-1) ... 263s Selecting previously unselected package libgl2ps1.4. 263s Preparing to unpack .../063-libgl2ps1.4_1.4.2+dfsg1-2_s390x.deb ... 263s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 263s Selecting previously unselected package libglew2.2:s390x. 263s Preparing to unpack .../064-libglew2.2_2.2.0-4_s390x.deb ... 263s Unpacking libglew2.2:s390x (2.2.0-4) ... 263s Selecting previously unselected package libsz2:s390x. 263s Preparing to unpack .../065-libsz2_1.1.2-1_s390x.deb ... 263s Unpacking libsz2:s390x (1.1.2-1) ... 263s Selecting previously unselected package libhdf5-103-1:s390x. 263s Preparing to unpack .../066-libhdf5-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 263s Unpacking libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 263s Selecting previously unselected package libhdf5-hl-100:s390x. 263s Preparing to unpack .../067-libhdf5-hl-100_1.10.10+repack-3ubuntu1_s390x.deb ... 263s Unpacking libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 263s Selecting previously unselected package libhwloc15:s390x. 263s Preparing to unpack .../068-libhwloc15_2.10.0-1_s390x.deb ... 263s Unpacking libhwloc15:s390x (2.10.0-1) ... 263s Selecting previously unselected package libjpeg-turbo8:s390x. 263s Preparing to unpack .../069-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 263s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 263s Selecting previously unselected package libjpeg8:s390x. 263s Preparing to unpack .../070-libjpeg8_8c-2ubuntu11_s390x.deb ... 263s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 263s Selecting previously unselected package libjsoncpp25:s390x. 263s Preparing to unpack .../071-libjsoncpp25_1.9.5-6_s390x.deb ... 263s Unpacking libjsoncpp25:s390x (1.9.5-6) ... 263s Selecting previously unselected package libkim-api2:s390x. 263s Preparing to unpack .../072-libkim-api2_2.3.0-1_s390x.deb ... 263s Unpacking libkim-api2:s390x (2.3.0-1) ... 263s Selecting previously unselected package liblapack3:s390x. 263s Preparing to unpack .../073-liblapack3_3.12.0-3_s390x.deb ... 263s Unpacking liblapack3:s390x (3.12.0-3) ... 263s Selecting previously unselected package libnetcdf19:s390x. 263s Preparing to unpack .../074-libnetcdf19_1%3a4.9.2-3ubuntu1_s390x.deb ... 263s Unpacking libnetcdf19:s390x (1:4.9.2-3ubuntu1) ... 263s Selecting previously unselected package libmunge2:s390x. 263s Preparing to unpack .../075-libmunge2_0.5.15-3ubuntu1_s390x.deb ... 263s Unpacking libmunge2:s390x (0.5.15-3ubuntu1) ... 263s Selecting previously unselected package libpciaccess0:s390x. 263s Preparing to unpack .../076-libpciaccess0_0.17-3_s390x.deb ... 263s Unpacking libpciaccess0:s390x (0.17-3) ... 263s Selecting previously unselected package libxnvctrl0:s390x. 263s Preparing to unpack .../077-libxnvctrl0_510.47.03-0ubuntu1_s390x.deb ... 263s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu1) ... 263s Selecting previously unselected package ocl-icd-libopencl1:s390x. 263s Preparing to unpack .../078-ocl-icd-libopencl1_2.3.2-1_s390x.deb ... 263s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1) ... 263s Selecting previously unselected package libhwloc-plugins:s390x. 263s Preparing to unpack .../079-libhwloc-plugins_2.10.0-1_s390x.deb ... 263s Unpacking libhwloc-plugins:s390x (2.10.0-1) ... 263s Selecting previously unselected package libpmix2:s390x. 263s Preparing to unpack .../080-libpmix2_5.0.1-4_s390x.deb ... 263s Unpacking libpmix2:s390x (5.0.1-4) ... 263s Selecting previously unselected package libopenmpi3:s390x. 263s Preparing to unpack .../081-libopenmpi3_4.1.6-5ubuntu1_s390x.deb ... 263s Unpacking libopenmpi3:s390x (4.1.6-5ubuntu1) ... 263s Selecting previously unselected package libpnetcdf0d:s390x. 263s Preparing to unpack .../082-libpnetcdf0d_1.12.3-2_s390x.deb ... 263s Unpacking libpnetcdf0d:s390x (1.12.3-2) ... 263s Selecting previously unselected package libpython3.12:s390x. 263s Preparing to unpack .../083-libpython3.12_3.12.2-1_s390x.deb ... 263s Unpacking libpython3.12:s390x (3.12.2-1) ... 263s Selecting previously unselected package libvoro++1. 263s Preparing to unpack .../084-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 263s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 263s Selecting previously unselected package libogg0:s390x. 263s Preparing to unpack .../085-libogg0_1.3.5-3_s390x.deb ... 263s Unpacking libogg0:s390x (1.3.5-3) ... 263s Selecting previously unselected package libopengl0:s390x. 263s Preparing to unpack .../086-libopengl0_1.7.0-1_s390x.deb ... 263s Unpacking libopengl0:s390x (1.7.0-1) ... 263s Selecting previously unselected package proj-data. 263s Preparing to unpack .../087-proj-data_9.3.1-1_all.deb ... 263s Unpacking proj-data (9.3.1-1) ... 263s Selecting previously unselected package libjbig0:s390x. 263s Preparing to unpack .../088-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 263s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 263s Selecting previously unselected package libsharpyuv0:s390x. 263s Preparing to unpack .../089-libsharpyuv0_1.3.2-0.4_s390x.deb ... 263s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 263s Selecting previously unselected package libwebp7:s390x. 263s Preparing to unpack .../090-libwebp7_1.3.2-0.4_s390x.deb ... 263s Unpacking libwebp7:s390x (1.3.2-0.4) ... 264s Selecting previously unselected package libtiff6:s390x. 264s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 264s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 264s Selecting previously unselected package libproj25:s390x. 264s Preparing to unpack .../092-libproj25_9.3.1-1_s390x.deb ... 264s Unpacking libproj25:s390x (9.3.1-1) ... 264s Selecting previously unselected package libtbbmalloc2:s390x. 264s Preparing to unpack .../093-libtbbmalloc2_2021.11.0-2ubuntu2_s390x.deb ... 264s Unpacking libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 264s Selecting previously unselected package libtbbbind-2-5:s390x. 264s Preparing to unpack .../094-libtbbbind-2-5_2021.11.0-2ubuntu2_s390x.deb ... 264s Unpacking libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 264s Selecting previously unselected package libtbb12:s390x. 264s Preparing to unpack .../095-libtbb12_2021.11.0-2ubuntu2_s390x.deb ... 264s Unpacking libtbb12:s390x (2021.11.0-2ubuntu2) ... 264s Selecting previously unselected package libtcl8.6:s390x. 264s Preparing to unpack .../096-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 264s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 264s Selecting previously unselected package libtheora0:s390x. 264s Preparing to unpack .../097-libtheora0_1.1.1+dfsg.1-16.1_s390x.deb ... 264s Unpacking libtheora0:s390x (1.1.1+dfsg.1-16.1) ... 264s Selecting previously unselected package libxft2:s390x. 264s Preparing to unpack .../098-libxft2_2.3.6-1_s390x.deb ... 264s Unpacking libxft2:s390x (2.3.6-1) ... 264s Selecting previously unselected package x11-common. 264s Preparing to unpack .../099-x11-common_1%3a7.7+23ubuntu2_all.deb ... 264s Unpacking x11-common (1:7.7+23ubuntu2) ... 264s Selecting previously unselected package libxss1:s390x. 264s Preparing to unpack .../100-libxss1_1%3a1.2.3-1build2_s390x.deb ... 264s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 264s Selecting previously unselected package libtk8.6:s390x. 264s Preparing to unpack .../101-libtk8.6_8.6.13-2_s390x.deb ... 264s Unpacking libtk8.6:s390x (8.6.13-2) ... 264s Selecting previously unselected package libvtk9.1:s390x. 264s Preparing to unpack .../102-libvtk9.1_9.1.0+really9.1.0+dfsg2-7build1_s390x.deb ... 264s Unpacking libvtk9.1:s390x (9.1.0+really9.1.0+dfsg2-7build1) ... 265s Selecting previously unselected package liblammps0:s390x. 265s Preparing to unpack .../103-liblammps0_20240207+dfsg-1_s390x.deb ... 265s Unpacking liblammps0:s390x (20240207+dfsg-1) ... 265s Selecting previously unselected package openmpi-common. 265s Preparing to unpack .../104-openmpi-common_4.1.6-5ubuntu1_all.deb ... 265s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 265s Selecting previously unselected package openmpi-bin. 265s Preparing to unpack .../105-openmpi-bin_4.1.6-5ubuntu1_s390x.deb ... 265s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 265s Selecting previously unselected package mpi-default-bin. 265s Preparing to unpack .../106-mpi-default-bin_1.15_s390x.deb ... 265s Unpacking mpi-default-bin (1.15) ... 265s Selecting previously unselected package lammps. 265s Preparing to unpack .../107-lammps_20240207+dfsg-1_s390x.deb ... 265s Unpacking lammps (20240207+dfsg-1) ... 265s Selecting previously unselected package autopkgtest-satdep. 265s Preparing to unpack .../108-1-autopkgtest-satdep.deb ... 265s Unpacking autopkgtest-satdep (0) ... 266s Setting up libxcb-dri3-0:s390x (1.15-1) ... 266s Setting up libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 266s Setting up libpixman-1-0:s390x (0.42.2-1) ... 266s Setting up librdmacm1:s390x (50.0-1) ... 266s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 266s Setting up libx11-xcb1:s390x (2:1.8.7-1) ... 266s Setting up libpciaccess0:s390x (0.17-3) ... 266s Setting up libdouble-conversion3:s390x (3.3.0-1) ... 266s Setting up libdrm-nouveau2:s390x (2.4.120-2) ... 266s Setting up libxcb-xfixes0:s390x (1.15-1) ... 266s Setting up libogg0:s390x (1.3.5-3) ... 266s Setting up proj-data (9.3.1-1) ... 266s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 266s Setting up lammps-data (20240207+dfsg-1) ... 266s Setting up libxcb-render0:s390x (1.15-1) ... 266s Setting up libdrm-radeon1:s390x (2.4.120-2) ... 266s Setting up libglvnd0:s390x (1.7.0-1) ... 266s Setting up libxcb-glx0:s390x (1.15-1) ... 266s Setting up x11-common (1:7.7+23ubuntu2) ... 266s Setting up libdeflate0:s390x (1.19-1) ... 266s Setting up linux-libc-dev:s390x (6.8.0-11.11) ... 266s Setting up libxcb-shm0:s390x (1.15-1) ... 266s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 266s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 266s Setting up libaec0:s390x (1.1.2-1) ... 266s Setting up libopengl0:s390x (1.7.0-1) ... 266s Setting up libxxf86vm1:s390x (1:1.1.4-1build3) ... 266s Setting up gcc-12-base:s390x (12.3.0-15ubuntu1) ... 266s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu1) ... 266s Setting up libxcb-present0:s390x (1.15-1) ... 266s Setting up libblas3:s390x (3.12.0-3) ... 266s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 266s Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ... 266s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 266s Setting up libmunge2:s390x (0.5.15-3ubuntu1) ... 266s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 266s Setting up libxfixes3:s390x (1:6.0.0-2) ... 266s Setting up libxcb-sync1:s390x (1.15-1) ... 266s Setting up fonts-dejavu-mono (2.37-8) ... 266s Setting up libhwloc15:s390x (2.10.0-1) ... 266s Setting up libmpc3:s390x (1.3.1-1) ... 266s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ... 266s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 266s Setting up libjsoncpp25:s390x (1.9.5-6) ... 266s Setting up fonts-dejavu-core (2.37-8) ... 266s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 266s Setting up libfftw3-double3:s390x (3.3.10-1ubuntu1) ... 266s Setting up libglapi-mesa:s390x (24.0.1-1ubuntu1) ... 266s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 266s Setting up libvulkan1:s390x (1.3.275.0-1) ... 266s Setting up libwebp7:s390x (1.3.2-0.4) ... 266s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ... 266s Setting up libxcb-dri2-0:s390x (1.15-1) ... 266s Setting up libnsl-dev:s390x (1.3.0-3) ... 266s Setting up ocl-icd-libopencl1:s390x (2.3.2-1) ... 266s Setting up libxshmfence1:s390x (1.3-1build4) ... 266s Setting up libcrypt-dev:s390x (1:4.4.36-4) ... 266s Setting up libxcb-randr0:s390x (1.15-1) ... 266s Setting up libasan8:s390x (14-20240303-1ubuntu1) ... 266s Setting up openmpi-common (4.1.6-5ubuntu1) ... 266s Setting up libxss1:s390x (1:1.2.3-1build2) ... 266s Setting up libisl23:s390x (0.26-3) ... 266s Setting up libc-dev-bin (2.39-0ubuntu2) ... 266s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 266s Setting up libllvm17:s390x (1:17.0.6-5build1) ... 266s Setting up libpython3.12:s390x (3.12.2-1) ... 266s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ... 266s Setting up libsz2:s390x (1.1.2-1) ... 266s Setting up libitm1:s390x (14-20240303-1ubuntu1) ... 266s Setting up libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ... 266s Setting up libdrm-amdgpu1:s390x (2.4.120-2) ... 266s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 266s Setting up libfabric1:s390x (1.17.0-3) ... 266s Setting up liblapack3:s390x (3.12.0-3) ... 266s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 266s Setting up cpp-12 (12.3.0-15ubuntu1) ... 266s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 266s Setting up libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ... 266s Setting up libhwloc-plugins:s390x (2.10.0-1) ... 266s Setting up libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 266s Setting up libgcc-12-dev:s390x (12.3.0-15ubuntu1) ... 266s Setting up libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 266s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 266s Setting up libc6-dev:s390x (2.39-0ubuntu2) ... 266s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 266s Setting up libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 266s Setting up libxft2:s390x (2.3.6-1) ... 266s Setting up libglx-mesa0:s390x (24.0.1-1ubuntu1) ... 266s Setting up libglx0:s390x (1.7.0-1) ... 266s Setting up libproj25:s390x (9.3.1-1) ... 266s Setting up libpmix2:s390x (5.0.1-4) ... 266s Setting up libopenmpi3:s390x (4.1.6-5ubuntu1) ... 266s Setting up libtk8.6:s390x (8.6.13-2) ... 266s Setting up libgfortran-12-dev:s390x (12.3.0-15ubuntu1) ... 266s Setting up libtbb12:s390x (2021.11.0-2ubuntu2) ... 266s Setting up libcairo2:s390x (1.18.0-1) ... 266s Setting up libgl1:s390x (1.7.0-1) ... 266s Setting up gcc-12 (12.3.0-15ubuntu1) ... 266s Setting up libglew2.2:s390x (2.2.0-4) ... 266s Setting up libnetcdf19:s390x (1:4.9.2-3ubuntu1) ... 266s Setting up libtheora0:s390x (1.1.1+dfsg.1-16.1) ... 266s Setting up libpnetcdf0d:s390x (1.12.3-2) ... 266s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 266s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 266s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 266s Setting up mpi-default-bin (1.15) ... 266s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 266s Setting up libvtk9.1:s390x (9.1.0+really9.1.0+dfsg2-7build1) ... 266s Setting up gfortran-12 (12.3.0-15ubuntu1) ... 266s Setting up libkim-api2:s390x (2.3.0-1) ... 266s Setting up liblammps0:s390x (20240207+dfsg-1) ... 266s Setting up lammps (20240207+dfsg-1) ... 266s Setting up autopkgtest-satdep (0) ... 266s Processing triggers for man-db (2.12.0-3) ... 266s Processing triggers for libc-bin (2.39-0ubuntu2) ... 269s (Reading database ... 55755 files and directories currently installed.) 269s Removing autopkgtest-satdep (0) ... 270s autopkgtest [19:01:27]: test crack: [----------------------- 270s LAMMPS (7 Feb 2024 - Update 1) 270s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 270s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 270s using 1 OpenMP thread(s) per MPI task 270s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 270s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 270s 2 by 1 by 1 MPI processor grid 270s Created 8141 atoms 270s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 270s create_atoms CPU = 0.002 seconds 270s 302 atoms in group lower 270s 302 atoms in group upper 270s 604 atoms in group boundary 270s 7537 atoms in group mobile 270s 841 atoms in group leftupper 270s 841 atoms in group leftlower 270s Setting atom values ... 270s 841 settings made for type 270s Setting atom values ... 270s 841 settings made for type 270s Setting atom values ... 270s 302 settings made for type 270s Setting atom values ... 270s 302 settings made for type 270s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 270s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 270s Neighbor list info ... 270s update: every = 1 steps, delay = 5 steps, check = yes 270s max neighbors/atom: 2000, page size: 100000 270s master list distance cutoff = 2.8 270s ghost atom cutoff = 2.8 270s binsize = 1.4, bins = 80 56 1 270s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 270s (1) pair lj/cut, perpetual 270s attributes: half, newton on 270s pair build: half/bin/atomonly/newton 270s stencil: half/bin/2d 270s bin: standard 270s Setting up Verlet run ... 270s Unit style : lj 270s Current step : 0 270s Time step : 0.003 270s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 270s Step Temp E_pair E_mol TotEng Press Volume 270s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 271s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 271s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 272s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 272s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 273s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 273s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 274s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 274s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 275s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 275s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 276s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 276s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 277s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 277s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 278s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 278s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 279s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 279s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 280s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 280s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 281s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 282s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 282s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 283s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 283s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 283s Loop time of 12.8901 on 2 procs for 5000 steps with 8141 atoms 283s 283s Performance: 100542.450 tau/day, 387.895 timesteps/s, 3.158 Matom-step/s 283s 47.9% CPU use with 2 MPI tasks x 1 OpenMP threads 283s 283s MPI task timing breakdown: 283s Section | min time | avg time | max time |%varavg| %total 283s --------------------------------------------------------------- 283s Pair | 5.5838 | 5.6621 | 5.7404 | 3.3 | 43.93 283s Neigh | 0.19378 | 0.19863 | 0.20348 | 1.1 | 1.54 283s Comm | 6.1326 | 6.4194 | 6.7062 | 11.3 | 49.80 283s Output | 0.0087279 | 0.009345 | 0.0099621 | 0.6 | 0.07 283s Modify | 0.2882 | 0.2982 | 0.3082 | 1.8 | 2.31 283s Other | | 0.3024 | | | 2.35 283s 283s Nlocal: 4070.5 ave 4085 max 4056 min 283s Histogram: 1 0 0 0 0 0 0 0 0 1 283s Nghost: 207 ave 208 max 206 min 283s Histogram: 1 0 0 0 0 0 0 0 0 1 283s Neighs: 35700 ave 35927 max 35473 min 283s Histogram: 1 0 0 0 0 0 0 0 0 1 283s 283s Total # of neighbors = 71400 283s Ave neighs/atom = 8.7704213 283s Neighbor list builds = 106 283s Dangerous builds = 0 283s Total wall time: 0:00:12 283s LAMMPS (7 Feb 2024 - Update 1) 295s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 295s using 1 OpenMP thread(s) per MPI task 295s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 295s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 295s 1 by 1 by 1 MPI processor grid 295s Created 8141 atoms 295s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 295s create_atoms CPU = 0.002 seconds 295s 302 atoms in group lower 295s 302 atoms in group upper 295s 604 atoms in group boundary 295s 7537 atoms in group mobile 295s 841 atoms in group leftupper 295s 841 atoms in group leftlower 295s Setting atom values ... 295s 841 settings made for type 295s Setting atom values ... 295s 841 settings made for type 295s Setting atom values ... 295s 302 settings made for type 295s Setting atom values ... 295s 302 settings made for type 295s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 295s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 295s Neighbor list info ... 295s update: every = 1 steps, delay = 5 steps, check = yes 295s max neighbors/atom: 2000, page size: 100000 295s master list distance cutoff = 2.8 295s ghost atom cutoff = 2.8 295s binsize = 1.4, bins = 80 56 1 295s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 295s (1) pair lj/cut, perpetual 295s attributes: half, newton on 295s pair build: half/bin/atomonly/newton 295s stencil: half/bin/2d 295s bin: standard 295s Setting up Verlet run ... 295s Unit style : lj 295s Current step : 0 295s Time step : 0.003 295s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 295s Step Temp E_pair E_mol TotEng Press Volume 295s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 295s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 295s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 295s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 295s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 295s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 295s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 295s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 295s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 295s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 295s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 295s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 295s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 295s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 295s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 295s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 295s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 295s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 295s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 295s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 295s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 295s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 295s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 296s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 296s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 296s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 296s Loop time of 12.3904 on 1 procs for 5000 steps with 8141 atoms 296s 296s Performance: 104597.138 tau/day, 403.538 timesteps/s, 3.285 Matom-step/s 296s 97.5% CPU use with 1 MPI tasks x 1 OpenMP threads 296s 296s MPI task timing breakdown: 296s Section | min time | avg time | max time |%varavg| %total 296s --------------------------------------------------------------- 296s Pair | 11.22 | 11.22 | 11.22 | 0.0 | 90.55 296s Neigh | 0.36319 | 0.36319 | 0.36319 | 0.0 | 2.93 296s Comm | 0.0048953 | 0.0048953 | 0.0048953 | 0.0 | 0.04 296s Output | 0.0019678 | 0.0019678 | 0.0019678 | 0.0 | 0.02 296s Modify | 0.62205 | 0.62205 | 0.62205 | 0.0 | 5.02 296s Other | | 0.1786 | | | 1.44 296s 296s Nlocal: 8141 ave 8141 max 8141 min 296s Histogram: 1 0 0 0 0 0 0 0 0 0 296s Nghost: 0 ave 0 max 0 min 296s Histogram: 1 0 0 0 0 0 0 0 0 0 296s Neighs: 71389 ave 71389 max 71389 min 296s Histogram: 1 0 0 0 0 0 0 0 0 0 296s 296s Total # of neighbors = 71389 296s Ave neighs/atom = 8.7690701 296s Neighbor list builds = 100 296s Dangerous builds = 0 296s Total wall time: 0:00:12 296s run: OK 296s autopkgtest [19:01:53]: test crack: -----------------------] 297s autopkgtest [19:01:54]: test crack: - - - - - - - - - - results - - - - - - - - - - 297s crack PASS 297s autopkgtest [19:01:54]: test dipole: preparing testbed 298s Reading package lists... 299s Building dependency tree... 299s Reading state information... 299s Starting pkgProblemResolver with broken count: 0 299s Starting 2 pkgProblemResolver with broken count: 0 299s Done 299s The following NEW packages will be installed: 299s autopkgtest-satdep 299s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 299s Need to get 0 B/708 B of archives. 299s After this operation, 0 B of additional disk space will be used. 299s Get:1 /tmp/autopkgtest.XBSDBP/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [708 B] 299s Selecting previously unselected package autopkgtest-satdep. 299s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55755 files and directories currently installed.) 299s Preparing to unpack .../2-autopkgtest-satdep.deb ... 299s Unpacking autopkgtest-satdep (0) ... 299s Setting up autopkgtest-satdep (0) ... 301s (Reading database ... 55755 files and directories currently installed.) 301s Removing autopkgtest-satdep (0) ... 302s autopkgtest [19:01:59]: test dipole: [----------------------- 302s LAMMPS (7 Feb 2024 - Update 1) 302s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 302s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 302s using 1 OpenMP thread(s) per MPI task 302s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 302s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 302s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 302s 2 by 1 by 1 MPI processor grid 302s Created 200 atoms 302s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 302s create_atoms CPU = 0.001 seconds 302s Setting atom values ... 302s 200 settings made for mass 302s Setting atom values ... 302s 200 settings made for dipole/random 302s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 302s Neighbor list info ... 302s update: every = 1 steps, delay = 0 steps, check = yes 302s max neighbors/atom: 2000, page size: 100000 302s master list distance cutoff = 2.8 302s ghost atom cutoff = 2.8 302s binsize = 1.4, bins = 13 13 2 302s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 302s (1) pair lj/cut/dipole/cut, perpetual 302s attributes: half, newton on 302s pair build: half/bin/atomonly/newton 302s stencil: half/bin/2d 302s bin: standard 302s Setting up Verlet run ... 302s Unit style : lj 302s Current step : 0 302s Time step : 0.005 302s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 302s Step Temp E_pair c_erot TotEng Press 302s 0 0 -2.1717485 0 -2.1717485 -2.5549017 302s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 302s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 302s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 302s 2000 0.41682174 -2.8150621 0.23053133 -2.4003244 -0.12755967 302s 2500 0.42226151 -2.7992773 0.21201574 -2.3791271 -0.42717565 302s 3000 0.40912644 -2.7687377 0.19983693 -2.3616569 0.13572202 302s 3500 0.43061123 -2.7771436 0.18913682 -2.3486855 -0.68871101 302s 4000 0.47642054 -2.8606122 0.23261313 -2.3865738 -0.26385194 302s 4500 0.43856522 -2.8161061 0.23395024 -2.3797337 -0.2451526 302s 5000 0.42765477 -2.8393865 0.27394472 -2.41387 -0.2578236 303s 5500 0.46375408 -2.8523674 0.26128049 -2.3909321 -0.074469682 303s 6000 0.37810306 -2.7407945 0.24127395 -2.364582 -0.017656351 303s 6500 0.40670883 -2.7670792 0.23827482 -2.3624039 -0.4153209 303s 7000 0.43381285 -2.7910058 0.24717951 -2.359362 -0.32827324 303s 7500 0.41395656 -2.7720326 0.24704428 -2.3601459 -0.31058846 303s 8000 0.42896544 -2.7586695 0.21848971 -2.3318489 -0.24582158 303s 8500 0.4159837 -2.7285922 0.20349242 -2.3146884 -0.21727121 303s 9000 0.43247532 -2.7365389 0.19865458 -2.306226 -0.13110924 303s 9500 0.4876086 -2.785822 0.20388831 -2.3006515 -0.080937633 303s 10000 0.42948035 -2.7655989 0.23832814 -2.3382659 -0.2360635 303s Loop time of 1.24945 on 2 procs for 10000 steps with 200 atoms 303s 303s Performance: 3457526.714 tau/day, 8003.534 timesteps/s, 1.601 Matom-step/s 303s 42.7% CPU use with 2 MPI tasks x 1 OpenMP threads 303s 303s MPI task timing breakdown: 303s Section | min time | avg time | max time |%varavg| %total 303s --------------------------------------------------------------- 303s Pair | 0.34869 | 0.36433 | 0.37996 | 2.6 | 29.16 303s Neigh | 0.021541 | 0.022275 | 0.023009 | 0.5 | 1.78 303s Comm | 0.71906 | 0.73533 | 0.7516 | 1.9 | 58.85 303s Output | 0.0011307 | 0.0016676 | 0.0022046 | 1.3 | 0.13 303s Modify | 0.051905 | 0.052301 | 0.052697 | 0.2 | 4.19 303s Other | | 0.07354 | | | 5.89 303s 303s Nlocal: 100 ave 103 max 97 min 303s Histogram: 1 0 0 0 0 0 0 0 0 1 303s Nghost: 125 ave 127 max 123 min 303s Histogram: 1 0 0 0 0 0 0 0 0 1 303s Neighs: 832 ave 852 max 812 min 303s Histogram: 1 0 0 0 0 0 0 0 0 1 303s 303s Total # of neighbors = 1664 303s Ave neighs/atom = 8.32 303s Neighbor list builds = 682 303s Dangerous builds = 0 303s Total wall time: 0:00:01 303s LAMMPS (7 Feb 2024 - Update 1) 304s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 304s using 1 OpenMP thread(s) per MPI task 304s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 304s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 304s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 304s 1 by 1 by 1 MPI processor grid 304s Created 200 atoms 304s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 304s create_atoms CPU = 0.001 seconds 304s Setting atom values ... 304s 200 settings made for mass 304s Setting atom values ... 304s 200 settings made for dipole/random 304s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 304s Neighbor list info ... 304s update: every = 1 steps, delay = 0 steps, check = yes 304s max neighbors/atom: 2000, page size: 100000 304s master list distance cutoff = 2.8 304s ghost atom cutoff = 2.8 304s binsize = 1.4, bins = 13 13 2 304s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 304s (1) pair lj/cut/dipole/cut, perpetual 304s attributes: half, newton on 304s pair build: half/bin/atomonly/newton 304s stencil: half/bin/2d 304s bin: standard 304s Setting up Verlet run ... 304s Unit style : lj 304s Current step : 0 304s Time step : 0.005 304s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 304s Step Temp E_pair c_erot TotEng Press 304s 0 0 -2.1717485 0 -2.1717485 -2.5549017 304s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 304s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 304s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 304s 2000 0.41682156 -2.815062 0.23053141 -2.4003245 -0.12755875 304s 2500 0.42249692 -2.7995109 0.2120131 -2.3791265 -0.42816448 304s 3000 0.41616758 -2.7781108 0.20164728 -2.364024 -0.020886314 304s 3500 0.45899292 -2.845444 0.21311649 -2.388746 -0.27031162 304s 4000 0.44192149 -2.8102242 0.2031683 -2.3705124 -0.16716401 304s 4500 0.50397271 -2.8780965 0.21354686 -2.3766437 -0.13676854 304s 5000 0.43620945 -2.7993403 0.2117878 -2.3653119 0.13226909 304s 5500 0.42861319 -2.7809996 0.2051046 -2.3545294 -0.19042969 304s 6000 0.46841814 -2.816026 0.19950812 -2.34995 -0.41629929 304s 6500 0.41697733 -2.7700652 0.20994527 -2.3551728 -0.27762295 304s 7000 0.45187547 -2.7823572 0.20168068 -2.3327412 -0.36487435 304s 7500 0.45027947 -2.8258363 0.25315235 -2.3778082 -0.30198681 304s 8000 0.45478856 -2.8289685 0.2494063 -2.3764539 0.02766223 304s 8500 0.47491136 -2.844227 0.24174939 -2.3716901 -0.18129259 304s 9000 0.40849079 -2.7425167 0.22352464 -2.3360684 -0.0069144283 304s 9500 0.41803515 -2.7832433 0.26484963 -2.3672983 -0.036254325 304s 10000 0.43935862 -2.7528327 0.22318819 -2.3156709 -0.14674506 304s Loop time of 0.916341 on 1 procs for 10000 steps with 200 atoms 304s 304s Performance: 4714402.356 tau/day, 10912.968 timesteps/s, 2.183 Matom-step/s 304s 97.9% CPU use with 1 MPI tasks x 1 OpenMP threads 304s 304s MPI task timing breakdown: 304s Section | min time | avg time | max time |%varavg| %total 304s --------------------------------------------------------------- 304s Pair | 0.72866 | 0.72866 | 0.72866 | 0.0 | 79.52 304s Neigh | 0.044336 | 0.044336 | 0.044336 | 0.0 | 4.84 304s Comm | 0.036129 | 0.036129 | 0.036129 | 0.0 | 3.94 304s Output | 0.00028759 | 0.00028759 | 0.00028759 | 0.0 | 0.03 304s Modify | 0.09258 | 0.09258 | 0.09258 | 0.0 | 10.10 304s Other | | 0.01435 | | | 1.57 304s 304s Nlocal: 200 ave 200 max 200 min 304s Histogram: 1 0 0 0 0 0 0 0 0 0 304s Nghost: 146 ave 146 max 146 min 304s Histogram: 1 0 0 0 0 0 0 0 0 0 304s Neighs: 1639 ave 1639 max 1639 min 304s Histogram: 1 0 0 0 0 0 0 0 0 0 304s 304s Total # of neighbors = 1639 304s Ave neighs/atom = 8.195 304s Neighbor list builds = 687 304s Dangerous builds = 0 304s Total wall time: 0:00:00 304s run: OK 305s autopkgtest [19:02:02]: test dipole: -----------------------] 305s autopkgtest [19:02:02]: test dipole: - - - - - - - - - - results - - - - - - - - - - 305s dipole PASS 305s autopkgtest [19:02:02]: test ellipse: preparing testbed 307s Reading package lists... 307s Building dependency tree... 307s Reading state information... 307s Starting pkgProblemResolver with broken count: 0 307s Starting 2 pkgProblemResolver with broken count: 0 307s Done 307s The following NEW packages will be installed: 307s autopkgtest-satdep 307s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 307s Need to get 0 B/704 B of archives. 307s After this operation, 0 B of additional disk space will be used. 307s Get:1 /tmp/autopkgtest.XBSDBP/3-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 308s Selecting previously unselected package autopkgtest-satdep. 308s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55755 files and directories currently installed.) 308s Preparing to unpack .../3-autopkgtest-satdep.deb ... 308s Unpacking autopkgtest-satdep (0) ... 308s Setting up autopkgtest-satdep (0) ... 309s (Reading database ... 55755 files and directories currently installed.) 309s Removing autopkgtest-satdep (0) ... 310s autopkgtest [19:02:07]: test ellipse: [----------------------- 310s LAMMPS (7 Feb 2024 - Update 1) 310s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 310s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 310s using 1 OpenMP thread(s) per MPI task 310s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 310s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 311s 2 by 1 by 1 MPI processor grid 311s Created 400 atoms 311s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 311s create_atoms CPU = 0.001 seconds 311s Setting atom values ... 311s 48 settings made for type/fraction 311s Setting atom values ... 311s 352 settings made for mass 311s Setting atom values ... 311s 48 settings made for mass 311s Setting atom values ... 311s 352 settings made for shape 311s Setting atom values ... 311s 48 settings made for shape 311s Setting atom values ... 311s 400 settings made for quat/random 311s 352 atoms in group spheroid 311s 311s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 311s 311s Your simulation uses code contributions which should be cited: 311s - pair gayberne command: doi:10.1063/1.3058435 311s The log file lists these citations in BibTeX format. 311s 311s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 311s 311s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 311s Neighbor list info ... 311s update: every = 1 steps, delay = 0 steps, check = yes 311s max neighbors/atom: 2000, page size: 100000 311s master list distance cutoff = 4.8 311s ghost atom cutoff = 4.8 311s binsize = 2.4, bins = 59 59 3 311s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 311s (1) pair gayberne, perpetual 311s attributes: half, newton on 311s pair build: half/bin/atomonly/newton 311s stencil: half/bin/2d 311s bin: standard 311s Setting up Verlet run ... 311s Unit style : lj 311s Current step : 0 311s Time step : 0.002 311s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 311s Step c_rot E_pair TotEng Press Volume 311s 0 2.2638298 0 2.394 0.04788 20000 311s 100 1.7507088 0 1.8513745 0.036020794 20558.953 311s 200 2.2704785 0 2.401031 0.046552815 20630.598 311s 300 1.862122 0 1.969194 0.042610426 18485.56 311s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 311s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 311s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 311s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 311s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 311s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 311s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 311s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 311s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 311s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 311s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 311s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 312s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 312s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 312s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 312s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 312s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 312s Loop time of 1.35463 on 2 procs for 2000 steps with 400 atoms 312s 312s Performance: 255125.267 tau/day, 1476.419 timesteps/s, 590.568 katom-step/s 312s 45.6% CPU use with 2 MPI tasks x 1 OpenMP threads 312s 312s MPI task timing breakdown: 312s Section | min time | avg time | max time |%varavg| %total 312s --------------------------------------------------------------- 312s Pair | 0.42093 | 0.44098 | 0.46104 | 3.0 | 32.55 312s Neigh | 0.014439 | 0.014575 | 0.014712 | 0.1 | 1.08 312s Comm | 0.58057 | 0.60026 | 0.61995 | 2.5 | 44.31 312s Output | 0.030619 | 0.030763 | 0.030907 | 0.1 | 2.27 312s Modify | 0.21151 | 0.21395 | 0.21639 | 0.5 | 15.79 312s Other | | 0.05409 | | | 3.99 312s 312s Nlocal: 200 ave 227 max 173 min 312s Histogram: 1 0 0 0 0 0 0 0 0 1 312s Nghost: 204 ave 206 max 202 min 312s Histogram: 1 0 0 0 0 0 0 0 0 1 312s Neighs: 1479.5 ave 1784 max 1175 min 312s Histogram: 1 0 0 0 0 0 0 0 0 1 312s 312s Total # of neighbors = 2959 312s Ave neighs/atom = 7.3975 312s Neighbor list builds = 348 312s Dangerous builds = 0 312s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 312s Setting up Verlet run ... 312s Unit style : lj 312s Current step : 2000 312s Time step : 0.002 312s Per MPI rank memory allocation (min/avg/max) = 6.9 | 6.9 | 6.9 Mbytes 312s Step c_rot E_pair TotEng Press Volume 312s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 312s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 312s 2200 1.9590367 -3.3182662 -1.3678333 0.35910433 1149.0282 312s 2300 2.0250309 -3.3891121 -1.3644964 0.46285769 1149.0282 312s 2400 2.085533 -3.4551199 -1.3401904 0.61189864 1149.0282 312s 2500 2.077574 -3.4482359 -1.3340251 1.0190852 1149.0282 312s 2600 2.0840722 -3.4558292 -1.3514352 0.7597702 1149.0282 312s 2700 2.1174248 -3.4915978 -1.3720622 0.82088405 1149.0282 313s 2800 2.0120484 -3.3803498 -1.3351386 1.0472272 1149.0282 313s 2900 2.095772 -3.4692917 -1.3762115 0.6503267 1149.0282 313s 3000 2.005185 -3.3743963 -1.3771538 0.74858505 1149.0282 313s 3100 2.0635196 -3.4375558 -1.3792354 0.72379626 1149.0282 313s 3200 2.0131468 -3.3825952 -1.3703433 1.1087307 1149.0282 313s 3300 2.0467878 -3.4185419 -1.3532024 0.7400243 1149.0282 313s 3400 1.9629403 -3.328306 -1.3871127 0.78865882 1149.0282 313s 3500 2.0576813 -3.4288036 -1.3361687 0.72305492 1149.0282 313s 3600 1.9638286 -3.3256476 -1.3663274 0.83792378 1149.0282 313s 3700 1.9900562 -3.3535764 -1.3259922 0.4389563 1149.0282 313s 3800 1.9016735 -3.2598525 -1.3493967 0.56256005 1149.0282 313s 3900 2.002131 -3.3658151 -1.3768647 0.59924524 1149.0282 314s 4000 1.9750784 -3.33731 -1.3724406 0.70702486 1149.0282 314s Loop time of 1.69361 on 2 procs for 2000 steps with 400 atoms 314s 314s Performance: 204060.917 tau/day, 1180.908 timesteps/s, 472.363 katom-step/s 314s 40.5% CPU use with 2 MPI tasks x 1 OpenMP threads 314s 314s MPI task timing breakdown: 314s Section | min time | avg time | max time |%varavg| %total 314s --------------------------------------------------------------- 314s Pair | 0.41365 | 0.55502 | 0.69639 | 19.0 | 32.77 314s Neigh | 0.0027042 | 0.0037174 | 0.0047306 | 1.7 | 0.22 314s Comm | 0.81341 | 0.9701 | 1.1268 | 15.9 | 57.28 314s Output | 0.035005 | 0.035462 | 0.035918 | 0.2 | 2.09 314s Modify | 0.058066 | 0.072937 | 0.087808 | 5.5 | 4.31 314s Other | | 0.05638 | | | 3.33 314s 314s Nlocal: 200 ave 242 max 158 min 314s Histogram: 1 0 0 0 0 0 0 0 0 1 314s Nghost: 186 ave 206 max 166 min 314s Histogram: 1 0 0 0 0 0 0 0 0 1 314s Neighs: 1548.5 ave 2045 max 1052 min 314s Histogram: 1 0 0 0 0 0 0 0 0 1 314s 314s Total # of neighbors = 3097 314s Ave neighs/atom = 7.7425 314s Neighbor list builds = 48 314s Dangerous builds = 0 314s Total wall time: 0:00:03 314s LAMMPS (7 Feb 2024 - Update 1) 315s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 315s using 1 OpenMP thread(s) per MPI task 315s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 315s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 315s 1 by 1 by 1 MPI processor grid 315s Created 400 atoms 315s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 315s create_atoms CPU = 0.001 seconds 315s Setting atom values ... 315s 48 settings made for type/fraction 315s Setting atom values ... 315s 352 settings made for mass 315s Setting atom values ... 315s 48 settings made for mass 315s Setting atom values ... 315s 352 settings made for shape 315s Setting atom values ... 315s 48 settings made for shape 315s Setting atom values ... 315s 400 settings made for quat/random 315s 352 atoms in group spheroid 315s 315s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 315s 315s Your simulation uses code contributions which should be cited: 315s - pair gayberne command: doi:10.1063/1.3058435 315s The log file lists these citations in BibTeX format. 315s 315s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 315s 315s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 315s Neighbor list info ... 315s update: every = 1 steps, delay = 0 steps, check = yes 315s max neighbors/atom: 2000, page size: 100000 315s master list distance cutoff = 4.8 315s ghost atom cutoff = 4.8 315s binsize = 2.4, bins = 59 59 3 315s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 315s (1) pair gayberne, perpetual 315s attributes: half, newton on 315s pair build: half/bin/atomonly/newton 315s stencil: half/bin/2d 315s bin: standard 315s Setting up Verlet run ... 315s Unit style : lj 315s Current step : 0 315s Time step : 0.002 315s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 315s Step c_rot E_pair TotEng Press Volume 315s 0 2.2638298 0 2.394 0.04788 20000 315s 100 1.7507088 0 1.8513745 0.036020794 20558.953 315s 200 2.2704785 0 2.401031 0.046552815 20630.598 315s 300 1.862122 0 1.969194 0.042610426 18485.56 315s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 315s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 315s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 315s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 315s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 315s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 315s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 315s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 315s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 315s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 315s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 315s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 315s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 315s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 315s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 315s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 315s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 315s Loop time of 1.16749 on 1 procs for 2000 steps with 400 atoms 315s 315s Performance: 296019.184 tau/day, 1713.074 timesteps/s, 685.230 katom-step/s 315s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 315s 315s MPI task timing breakdown: 315s Section | min time | avg time | max time |%varavg| %total 315s --------------------------------------------------------------- 315s Pair | 0.86821 | 0.86821 | 0.86821 | 0.0 | 74.37 316s Neigh | 0.028141 | 0.028141 | 0.028141 | 0.0 | 2.41 316s Comm | 0.010713 | 0.010713 | 0.010713 | 0.0 | 0.92 316s Output | 0.02457 | 0.02457 | 0.02457 | 0.0 | 2.10 316s Modify | 0.23009 | 0.23009 | 0.23009 | 0.0 | 19.71 316s Other | | 0.005767 | | | 0.49 316s 316s Nlocal: 400 ave 400 max 400 min 316s Histogram: 1 0 0 0 0 0 0 0 0 0 316s Nghost: 255 ave 255 max 255 min 316s Histogram: 1 0 0 0 0 0 0 0 0 0 316s Neighs: 2959 ave 2959 max 2959 min 316s Histogram: 1 0 0 0 0 0 0 0 0 0 316s 316s Total # of neighbors = 2959 316s Ave neighs/atom = 7.3975 316s Neighbor list builds = 348 316s Dangerous builds = 0 316s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 316s Setting up Verlet run ... 316s Unit style : lj 316s Current step : 2000 316s Time step : 0.002 316s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 316s Step c_rot E_pair TotEng Press Volume 316s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 316s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 316s 2200 1.9590368 -3.3182663 -1.3678333 0.35910425 1149.0282 316s 2300 2.0250308 -3.3891119 -1.3644964 0.46285779 1149.0282 316s 2400 2.0855331 -3.45512 -1.3401904 0.61189841 1149.0282 316s 2500 2.0775737 -3.4482356 -1.3340258 1.0190836 1149.0282 316s 2600 2.084072 -3.4558289 -1.3514359 0.75976918 1149.0282 316s 2700 2.1174308 -3.4916046 -1.3720664 0.82086811 1149.0282 316s 2800 2.0120441 -3.3803491 -1.3351469 1.047208 1149.0282 316s 2900 2.0957766 -3.4692999 -1.376208 0.65043335 1149.0282 316s 3000 2.00512 -3.3743288 -1.3771585 0.7487656 1149.0282 316s 3100 2.0635277 -3.4376031 -1.3792202 0.72375619 1149.0282 316s 3200 2.0130716 -3.3825107 -1.3702334 1.1098674 1149.0282 316s 3300 2.0463568 -3.4179583 -1.3534773 0.73871011 1149.0282 316s 3400 1.9649348 -3.3304023 -1.3860539 0.77548498 1149.0282 316s 3500 2.0501941 -3.4213612 -1.3373407 0.73278199 1149.0282 316s 3600 1.9881829 -3.3519947 -1.3795107 0.73402726 1149.0282 316s 3700 1.9994085 -3.3655341 -1.3599281 0.3911747 1149.0282 316s 3800 1.963869 -3.3264036 -1.3599099 0.50519594 1149.0282 316s 3900 1.9970107 -3.3624111 -1.3743885 1.0960718 1149.0282 316s 4000 2.0620245 -3.4315752 -1.3998675 0.54966642 1149.0282 316s Loop time of 1.29292 on 1 procs for 2000 steps with 400 atoms 316s 316s Performance: 267302.409 tau/day, 1546.889 timesteps/s, 618.756 katom-step/s 316s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 316s 316s MPI task timing breakdown: 316s Section | min time | avg time | max time |%varavg| %total 316s --------------------------------------------------------------- 316s Pair | 1.0997 | 1.0997 | 1.0997 | 0.0 | 85.06 316s Neigh | 0.0072559 | 0.0072559 | 0.0072559 | 0.0 | 0.56 316s Comm | 0.010531 | 0.010531 | 0.010531 | 0.0 | 0.81 316s Output | 0.024219 | 0.024219 | 0.024219 | 0.0 | 1.87 316s Modify | 0.1462 | 0.1462 | 0.1462 | 0.0 | 11.31 316s Other | | 0.004968 | | | 0.38 316s 316s Nlocal: 400 ave 400 max 400 min 316s Histogram: 1 0 0 0 0 0 0 0 0 0 316s Nghost: 240 ave 240 max 240 min 316s Histogram: 1 0 0 0 0 0 0 0 0 0 316s Neighs: 3096 ave 3096 max 3096 min 316s Histogram: 1 0 0 0 0 0 0 0 0 0 316s 316s Total # of neighbors = 3096 316s Ave neighs/atom = 7.74 316s Neighbor list builds = 49 316s Dangerous builds = 0 316s Total wall time: 0:00:02 316s LAMMPS (7 Feb 2024 - Update 1) 316s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 316s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 316s using 1 OpenMP thread(s) per MPI task 316s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 316s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 316s 2 by 1 by 1 MPI processor grid 316s Created 400 atoms 316s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 316s create_atoms CPU = 0.001 seconds 316s Setting atom values ... 316s 48 settings made for type/fraction 316s Setting atom values ... 316s 352 settings made for mass 316s Setting atom values ... 316s 48 settings made for mass 316s Setting atom values ... 316s 352 settings made for shape 316s Setting atom values ... 316s 48 settings made for shape 316s Setting atom values ... 316s 400 settings made for quat/random 316s 352 atoms in group spheroid 316s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 316s Neighbor list info ... 316s update: every = 1 steps, delay = 0 steps, check = yes 316s max neighbors/atom: 2000, page size: 100000 316s master list distance cutoff = 4.8 316s ghost atom cutoff = 4.8 316s binsize = 2.4, bins = 59 59 3 316s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 316s (1) pair resquared, perpetual 316s attributes: half, newton on 316s pair build: half/bin/atomonly/newton 316s stencil: half/bin/2d 316s bin: standard 316s Setting up Verlet run ... 316s Unit style : lj 316s Current step : 0 316s Time step : 0.002 316s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 316s Step c_rot E_pair TotEng Press Volume 316s 0 2.2638298 0 2.394 0.04788 20000 316s 100 1.7507088 0 1.8513745 0.036020794 20558.953 316s 200 2.2704785 0 2.401031 0.046552815 20630.598 316s 300 1.862122 0 1.969194 0.042610426 18485.56 316s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 316s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 317s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 317s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 317s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 317s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 317s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 317s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 317s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 318s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 318s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 318s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 318s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 318s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 318s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 318s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 318s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 318s Loop time of 2.11091 on 2 procs for 2000 steps with 400 atoms 318s 318s Performance: 163721.205 tau/day, 947.461 timesteps/s, 378.984 katom-step/s 318s 47.0% CPU use with 2 MPI tasks x 1 OpenMP threads 318s 318s MPI task timing breakdown: 318s Section | min time | avg time | max time |%varavg| %total 318s --------------------------------------------------------------- 318s Pair | 0.80397 | 0.81789 | 0.83181 | 1.5 | 38.75 318s Neigh | 0.015371 | 0.015454 | 0.015538 | 0.1 | 0.73 318s Comm | 0.95598 | 0.97006 | 0.98415 | 1.4 | 45.95 318s Output | 0.030183 | 0.030281 | 0.03038 | 0.1 | 1.43 318s Modify | 0.22166 | 0.22183 | 0.222 | 0.0 | 10.51 318s Other | | 0.05539 | | | 2.62 318s 318s Nlocal: 200 ave 206 max 194 min 318s Histogram: 1 0 0 0 0 0 0 0 0 1 318s Nghost: 166 ave 172 max 160 min 318s Histogram: 1 0 0 0 0 0 0 0 0 1 318s Neighs: 990.5 ave 1028 max 953 min 318s Histogram: 1 0 0 0 0 0 0 0 0 1 318s 318s Total # of neighbors = 1981 318s Ave neighs/atom = 4.9525 318s Neighbor list builds = 410 318s Dangerous builds = 0 318s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 318s Setting up Verlet run ... 318s Unit style : lj 318s Current step : 2000 318s Time step : 0.002 318s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 318s Step c_rot E_pair TotEng Press Volume 318s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 319s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 319s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 319s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 319s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 319s 2500 2.1396456 0.25118294 2.3450649 1.7231479 1625.5704 320s 2600 2.1724989 0.21652796 2.36624 1.5785682 1625.5704 320s 2700 2.1347133 0.2565462 2.3819962 1.7939756 1625.5704 320s 2800 2.2187273 0.16767707 2.3890091 1.3803388 1625.5704 320s 2900 2.2653117 0.11841424 2.358481 1.1423479 1625.5704 320s 3000 2.1965681 0.19125616 2.3687823 1.55014 1625.5704 320s 3100 2.1970501 0.19052613 2.3694703 1.4706426 1625.5704 321s 3200 2.1661439 0.22324214 2.3939177 1.619691 1625.5704 321s 3300 2.1298288 0.26157991 2.3997036 1.8700501 1625.5704 321s 3400 2.1293647 0.26220526 2.373699 1.7332686 1625.5704 321s 3500 2.1835494 0.20483304 2.4031724 1.5471088 1625.5704 321s 3600 2.1875445 0.20049079 2.4159533 1.5995253 1625.5704 322s 3700 2.1186666 0.27351639 2.4141913 1.9057949 1625.5704 322s 3800 2.1752149 0.2136072 2.3067948 1.5705518 1625.5704 322s 3900 2.1976482 0.18993383 2.4017837 1.4844827 1625.5704 322s 4000 2.1788977 0.20960933 2.3437572 1.576965 1625.5704 322s Loop time of 3.71444 on 2 procs for 2000 steps with 400 atoms 322s 322s Performance: 93042.186 tau/day, 538.439 timesteps/s, 215.375 katom-step/s 322s 46.6% CPU use with 2 MPI tasks x 1 OpenMP threads 322s 322s MPI task timing breakdown: 322s Section | min time | avg time | max time |%varavg| %total 322s --------------------------------------------------------------- 322s Pair | 1.5834 | 1.6339 | 1.6844 | 4.0 | 43.99 322s Neigh | 0.0029737 | 0.0031031 | 0.0032326 | 0.2 | 0.08 322s Comm | 1.8553 | 1.9076 | 1.9599 | 3.8 | 51.36 322s Output | 0.036801 | 0.037222 | 0.037642 | 0.2 | 1.00 322s Modify | 0.074603 | 0.07664 | 0.078676 | 0.7 | 2.06 322s Other | | 0.05597 | | | 1.51 322s 322s Nlocal: 200 ave 207 max 193 min 322s Histogram: 1 0 0 0 0 0 0 0 0 1 322s Nghost: 162.5 ave 165 max 160 min 322s Histogram: 1 0 0 0 0 0 0 0 0 1 322s Neighs: 966 ave 1009 max 923 min 322s Histogram: 1 0 0 0 0 0 0 0 0 1 322s 322s Total # of neighbors = 1932 322s Ave neighs/atom = 4.83 322s Neighbor list builds = 50 322s Dangerous builds = 0 322s Total wall time: 0:00:05 322s LAMMPS (7 Feb 2024 - Update 1) 324s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 324s using 1 OpenMP thread(s) per MPI task 324s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 324s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 324s 1 by 1 by 1 MPI processor grid 324s Created 400 atoms 324s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 324s create_atoms CPU = 0.001 seconds 324s Setting atom values ... 324s 48 settings made for type/fraction 324s Setting atom values ... 324s 352 settings made for mass 324s Setting atom values ... 324s 48 settings made for mass 324s Setting atom values ... 324s 352 settings made for shape 324s Setting atom values ... 324s 48 settings made for shape 324s Setting atom values ... 324s 400 settings made for quat/random 324s 352 atoms in group spheroid 324s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 324s Neighbor list info ... 324s update: every = 1 steps, delay = 0 steps, check = yes 324s max neighbors/atom: 2000, page size: 100000 324s master list distance cutoff = 4.8 324s ghost atom cutoff = 4.8 324s binsize = 2.4, bins = 59 59 3 324s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 324s (1) pair resquared, perpetual 324s attributes: half, newton on 324s pair build: half/bin/atomonly/newton 324s stencil: half/bin/2d 324s bin: standard 324s Setting up Verlet run ... 324s Unit style : lj 324s Current step : 0 324s Time step : 0.002 324s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 324s Step c_rot E_pair TotEng Press Volume 324s 0 2.2638298 0 2.394 0.04788 20000 324s 100 1.7507088 0 1.8513745 0.036020794 20558.953 324s 200 2.2704785 0 2.401031 0.046552815 20630.598 324s 300 1.862122 0 1.969194 0.042610426 18485.56 324s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 324s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 324s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 324s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 324s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 324s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 324s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 324s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 324s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 324s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 324s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 324s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 324s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 324s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 324s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 324s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 324s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 324s Loop time of 1.8605 on 1 procs for 2000 steps with 400 atoms 324s 324s Performance: 185756.823 tau/day, 1074.982 timesteps/s, 429.993 katom-step/s 324s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 324s 324s MPI task timing breakdown: 324s Section | min time | avg time | max time |%varavg| %total 324s --------------------------------------------------------------- 324s Pair | 1.5626 | 1.5626 | 1.5626 | 0.0 | 83.99 324s Neigh | 0.02882 | 0.02882 | 0.02882 | 0.0 | 1.55 324s Comm | 0.0088536 | 0.0088536 | 0.0088536 | 0.0 | 0.48 324s Output | 0.026131 | 0.026131 | 0.026131 | 0.0 | 1.40 324s Modify | 0.22828 | 0.22828 | 0.22828 | 0.0 | 12.27 327s Other | | 0.005798 | | | 0.31 327s 327s Nlocal: 400 ave 400 max 400 min 327s Histogram: 1 0 0 0 0 0 0 0 0 0 327s Nghost: 214 ave 214 max 214 min 327s Histogram: 1 0 0 0 0 0 0 0 0 0 327s Neighs: 1981 ave 1981 max 1981 min 327s Histogram: 1 0 0 0 0 0 0 0 0 0 327s 327s Total # of neighbors = 1981 327s Ave neighs/atom = 4.9525 327s Neighbor list builds = 410 327s Dangerous builds = 0 327s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 327s Setting up Verlet run ... 327s Unit style : lj 327s Current step : 2000 327s Time step : 0.002 327s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 327s Step c_rot E_pair TotEng Press Volume 327s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 327s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 327s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 327s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 327s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 327s 2500 2.1396456 0.25118295 2.3450649 1.7231479 1625.5704 327s 2600 2.1724989 0.21652796 2.3662399 1.5785682 1625.5704 327s 2700 2.1347133 0.25654622 2.3819962 1.7939757 1625.5704 327s 2800 2.2187273 0.16767709 2.3890091 1.3803389 1625.5704 327s 2900 2.2653117 0.1184142 2.3584809 1.1423477 1625.5704 327s 3000 2.1965682 0.19125607 2.3687823 1.5501394 1625.5704 327s 3100 2.1970503 0.19052592 2.3694702 1.4706415 1625.5704 327s 3200 2.1661438 0.22324217 2.393918 1.619691 1625.5704 327s 3300 2.1298268 0.26158212 2.3997056 1.8700704 1625.5704 327s 3400 2.129366 0.26220387 2.3736989 1.7332623 1625.5704 327s 3500 2.1835467 0.20483593 2.4031735 1.5471227 1625.5704 327s 3600 2.187532 0.20050401 2.4159602 1.5996363 1625.5704 327s 3700 2.1186808 0.2735013 2.4141937 1.9057216 1625.5704 327s 3800 2.1752481 0.21357202 2.3067618 1.5703983 1625.5704 327s 3900 2.1976728 0.18990792 2.4017814 1.4843601 1625.5704 327s 4000 2.1786303 0.20989248 2.3438733 1.578595 1625.5704 327s Loop time of 3.24742 on 1 procs for 2000 steps with 400 atoms 327s 327s Performance: 106423.092 tau/day, 615.874 timesteps/s, 246.350 katom-step/s 327s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 327s 327s MPI task timing breakdown: 327s Section | min time | avg time | max time |%varavg| %total 327s --------------------------------------------------------------- 327s Pair | 3.0591 | 3.0591 | 3.0591 | 0.0 | 94.20 327s Neigh | 0.0058262 | 0.0058262 | 0.0058262 | 0.0 | 0.18 327s Comm | 0.0095665 | 0.0095665 | 0.0095665 | 0.0 | 0.29 327s Output | 0.025617 | 0.025617 | 0.025617 | 0.0 | 0.79 327s Modify | 0.14212 | 0.14212 | 0.14212 | 0.0 | 4.38 327s Other | | 0.005207 | | | 0.16 327s 327s Nlocal: 400 ave 400 max 400 min 327s Histogram: 1 0 0 0 0 0 0 0 0 0 327s Nghost: 208 ave 208 max 208 min 327s Histogram: 1 0 0 0 0 0 0 0 0 0 327s Neighs: 1932 ave 1932 max 1932 min 327s Histogram: 1 0 0 0 0 0 0 0 0 0 327s 327s Total # of neighbors = 1932 327s Ave neighs/atom = 4.83 327s Neighbor list builds = 50 327s Dangerous builds = 0 327s Total wall time: 0:00:05 327s run: OK 328s autopkgtest [19:02:25]: test ellipse: -----------------------] 328s autopkgtest [19:02:25]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 328s ellipse PASS 329s autopkgtest [19:02:26]: test flow: preparing testbed 341s Reading package lists... 341s Building dependency tree... 341s Reading state information... 341s Starting pkgProblemResolver with broken count: 0 341s Starting 2 pkgProblemResolver with broken count: 0 341s Done 341s The following NEW packages will be installed: 341s autopkgtest-satdep 341s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 341s Need to get 0 B/704 B of archives. 341s After this operation, 0 B of additional disk space will be used. 341s Get:1 /tmp/autopkgtest.XBSDBP/4-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 342s Selecting previously unselected package autopkgtest-satdep. 342s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55755 files and directories currently installed.) 342s Preparing to unpack .../4-autopkgtest-satdep.deb ... 342s Unpacking autopkgtest-satdep (0) ... 342s Setting up autopkgtest-satdep (0) ... 344s (Reading database ... 55755 files and directories currently installed.) 344s Removing autopkgtest-satdep (0) ... 345s autopkgtest [19:02:42]: test flow: [----------------------- 345s LAMMPS (7 Feb 2024 - Update 1) 345s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 345s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 345s using 1 OpenMP thread(s) per MPI task 345s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 345s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 345s 2 by 1 by 1 MPI processor grid 345s Created 420 atoms 345s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 345s create_atoms CPU = 0.001 seconds 345s 60 atoms in group lower 345s 60 atoms in group upper 345s 120 atoms in group boundary 345s 300 atoms in group flow 345s Setting atom values ... 345s 60 settings made for type 345s Setting atom values ... 345s 60 settings made for type 345s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 345s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 345s Neighbor list info ... 345s update: every = 1 steps, delay = 5 steps, check = yes 345s max neighbors/atom: 2000, page size: 100000 345s master list distance cutoff = 1.42246 345s ghost atom cutoff = 1.42246 345s binsize = 0.71123, bins = 37 32 1 345s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 345s (1) pair lj/cut, perpetual 345s attributes: half, newton on 345s pair build: half/bin/atomonly/newton 345s stencil: half/bin/2d 345s bin: standard 345s Setting up Verlet run ... 345s Unit style : lj 345s Current step : 0 345s Time step : 0.003 346s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 346s Step Temp E_pair E_mol TotEng Press Volume 346s 0 1 0 0 0.71190476 0.52314537 571.54286 346s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 346s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 346s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 346s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 346s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 346s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 346s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 346s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 346s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 346s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 346s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 346s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 346s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 346s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 346s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 346s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 346s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 346s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 346s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 346s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 346s Loop time of 0.541747 on 2 procs for 10000 steps with 420 atoms 346s 346s Performance: 4784522.764 tau/day, 18458.807 timesteps/s, 7.753 Matom-step/s 346s 37.2% CPU use with 2 MPI tasks x 1 OpenMP threads 346s 346s MPI task timing breakdown: 346s Section | min time | avg time | max time |%varavg| %total 346s --------------------------------------------------------------- 346s Pair | 0.081022 | 0.081165 | 0.081309 | 0.1 | 14.98 346s Neigh | 0.032609 | 0.03269 | 0.032772 | 0.0 | 6.03 346s Comm | 0.34195 | 0.34259 | 0.34324 | 0.1 | 63.24 346s Output | 0.0012753 | 0.0018913 | 0.0025073 | 1.4 | 0.35 346s Modify | 0.036539 | 0.036735 | 0.036932 | 0.1 | 6.78 346s Other | | 0.04667 | | | 8.61 346s 346s Nlocal: 210 ave 214 max 206 min 346s Histogram: 1 0 0 0 0 0 0 0 0 1 346s Nghost: 51 ave 52 max 50 min 346s Histogram: 1 0 0 0 0 0 0 0 0 1 346s Neighs: 472 ave 494 max 450 min 346s Histogram: 1 0 0 0 0 0 0 0 0 1 346s 346s Total # of neighbors = 944 346s Ave neighs/atom = 2.247619 346s Neighbor list builds = 994 346s Dangerous builds = 0 346s Total wall time: 0:00:00 346s LAMMPS (7 Feb 2024 - Update 1) 346s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 346s using 1 OpenMP thread(s) per MPI task 346s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 346s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 346s 1 by 1 by 1 MPI processor grid 346s Created 420 atoms 346s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 346s create_atoms CPU = 0.000 seconds 346s 60 atoms in group lower 346s 60 atoms in group upper 346s 120 atoms in group boundary 346s 300 atoms in group flow 346s Setting atom values ... 346s 60 settings made for type 346s Setting atom values ... 346s 60 settings made for type 346s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 346s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 346s Neighbor list info ... 346s update: every = 1 steps, delay = 5 steps, check = yes 346s max neighbors/atom: 2000, page size: 100000 346s master list distance cutoff = 1.42246 346s ghost atom cutoff = 1.42246 346s binsize = 0.71123, bins = 37 32 1 346s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 346s (1) pair lj/cut, perpetual 346s attributes: half, newton on 346s pair build: half/bin/atomonly/newton 346s stencil: half/bin/2d 346s bin: standard 346s Setting up Verlet run ... 346s Unit style : lj 346s Current step : 0 346s Time step : 0.003 346s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 346s Step Temp E_pair E_mol TotEng Press Volume 346s 0 1 0 0 0.71190476 0.52314537 571.54286 346s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 346s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 346s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 346s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 346s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 346s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 346s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 346s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 346s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 346s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 346s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 346s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 346s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 346s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 346s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 346s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 346s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 346s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 346s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 346s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 346s Loop time of 0.307267 on 1 procs for 10000 steps with 420 atoms 346s 346s Performance: 8435648.990 tau/day, 32544.942 timesteps/s, 13.669 Matom-step/s 346s 97.3% CPU use with 1 MPI tasks x 1 OpenMP threads 346s 346s MPI task timing breakdown: 346s Section | min time | avg time | max time |%varavg| %total 346s --------------------------------------------------------------- 346s Pair | 0.16039 | 0.16039 | 0.16039 | 0.0 | 52.20 346s Neigh | 0.061923 | 0.061923 | 0.061923 | 0.0 | 20.15 346s Comm | 0.0067185 | 0.0067185 | 0.0067185 | 0.0 | 2.19 346s Output | 0.00027985 | 0.00027985 | 0.00027985 | 0.0 | 0.09 346s Modify | 0.063085 | 0.063085 | 0.063085 | 0.0 | 20.53 346s Other | | 0.01487 | | | 4.84 346s 346s Nlocal: 420 ave 420 max 420 min 346s Histogram: 1 0 0 0 0 0 0 0 0 0 346s Nghost: 50 ave 50 max 50 min 346s Histogram: 1 0 0 0 0 0 0 0 0 0 346s Neighs: 946 ave 946 max 946 min 346s Histogram: 1 0 0 0 0 0 0 0 0 0 346s 346s Total # of neighbors = 946 346s Ave neighs/atom = 2.252381 346s Neighbor list builds = 979 346s Dangerous builds = 0 346s Total wall time: 0:00:00 347s LAMMPS (7 Feb 2024 - Update 1) 347s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 347s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 347s using 1 OpenMP thread(s) per MPI task 347s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 347s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 347s 2 by 1 by 1 MPI processor grid 347s Created 420 atoms 347s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 347s create_atoms CPU = 0.001 seconds 347s 60 atoms in group lower 347s 60 atoms in group upper 347s 120 atoms in group boundary 347s 300 atoms in group flow 347s Setting atom values ... 347s 60 settings made for type 347s Setting atom values ... 347s 60 settings made for type 347s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 347s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 347s Neighbor list info ... 347s update: every = 1 steps, delay = 5 steps, check = yes 347s max neighbors/atom: 2000, page size: 100000 347s master list distance cutoff = 1.42246 347s ghost atom cutoff = 1.42246 347s binsize = 0.71123, bins = 37 32 1 347s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 347s (1) pair lj/cut, perpetual 347s attributes: half, newton on 347s pair build: half/bin/atomonly/newton 347s stencil: half/bin/2d 347s bin: standard 347s Setting up Verlet run ... 347s Unit style : lj 347s Current step : 0 347s Time step : 0.003 347s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 347s Step Temp E_pair E_mol TotEng Press Volume 347s 0 1 0 0 0.71190476 0.52314537 571.54286 347s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 347s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 347s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 347s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 347s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 347s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 347s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 347s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 347s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 347s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 347s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 347s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 347s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 347s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 347s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 347s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 347s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 347s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 347s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 347s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 347s Loop time of 0.566885 on 2 procs for 10000 steps with 420 atoms 347s 347s Performance: 4572352.299 tau/day, 17640.248 timesteps/s, 7.409 Matom-step/s 347s 38.3% CPU use with 2 MPI tasks x 1 OpenMP threads 347s 347s MPI task timing breakdown: 347s Section | min time | avg time | max time |%varavg| %total 347s --------------------------------------------------------------- 347s Pair | 0.08943 | 0.089622 | 0.089815 | 0.1 | 15.81 347s Neigh | 0.018262 | 0.01832 | 0.018377 | 0.0 | 3.23 347s Comm | 0.28775 | 0.28784 | 0.28793 | 0.0 | 50.78 347s Output | 0.00058646 | 0.00084521 | 0.001104 | 0.0 | 0.15 347s Modify | 0.11597 | 0.11734 | 0.11871 | 0.4 | 20.70 347s Other | | 0.05291 | | | 9.33 347s 347s Nlocal: 210 ave 211 max 209 min 347s Histogram: 1 0 0 0 0 0 0 0 0 1 347s Nghost: 50 ave 51 max 49 min 347s Histogram: 1 0 0 0 0 0 0 0 0 1 347s Neighs: 563.5 ave 569 max 558 min 347s Histogram: 1 0 0 0 0 0 0 0 0 1 347s 347s Total # of neighbors = 1127 347s Ave neighs/atom = 2.6833333 347s Neighbor list builds = 560 347s Dangerous builds = 0 347s Total wall time: 0:00:00 347s LAMMPS (7 Feb 2024 - Update 1) 348s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 348s using 1 OpenMP thread(s) per MPI task 348s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 348s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 348s 1 by 1 by 1 MPI processor grid 348s Created 420 atoms 348s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 348s create_atoms CPU = 0.000 seconds 348s 60 atoms in group lower 348s 60 atoms in group upper 348s 120 atoms in group boundary 348s 300 atoms in group flow 348s Setting atom values ... 348s 60 settings made for type 348s Setting atom values ... 348s 60 settings made for type 348s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 348s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 348s Neighbor list info ... 348s update: every = 1 steps, delay = 5 steps, check = yes 348s max neighbors/atom: 2000, page size: 100000 348s master list distance cutoff = 1.42246 348s ghost atom cutoff = 1.42246 348s binsize = 0.71123, bins = 37 32 1 348s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 348s (1) pair lj/cut, perpetual 348s attributes: half, newton on 348s pair build: half/bin/atomonly/newton 348s stencil: half/bin/2d 348s bin: standard 348s Setting up Verlet run ... 348s Unit style : lj 348s Current step : 0 348s Time step : 0.003 348s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 348s Step Temp E_pair E_mol TotEng Press Volume 348s 0 1 0 0 0.71190476 0.52314537 571.54286 348s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 348s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 348s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 348s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 348s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 348s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 348s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 348s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 348s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 348s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 348s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 348s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 348s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 348s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 348s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 348s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 348s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 348s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 348s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 348s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 348s Loop time of 0.348314 on 1 procs for 10000 steps with 420 atoms 348s 348s Performance: 7441566.627 tau/day, 28709.748 timesteps/s, 12.058 Matom-step/s 348s 97.8% CPU use with 1 MPI tasks x 1 OpenMP threads 348s 348s MPI task timing breakdown: 348s Section | min time | avg time | max time |%varavg| %total 348s --------------------------------------------------------------- 348s Pair | 0.18013 | 0.18013 | 0.18013 | 0.0 | 51.72 348s Neigh | 0.03639 | 0.03639 | 0.03639 | 0.0 | 10.45 348s Comm | 0.0055971 | 0.0055971 | 0.0055971 | 0.0 | 1.61 348s Output | 0.00019646 | 0.00019646 | 0.00019646 | 0.0 | 0.06 348s Modify | 0.11216 | 0.11216 | 0.11216 | 0.0 | 32.20 348s Other | | 0.01383 | | | 3.97 348s 348s Nlocal: 420 ave 420 max 420 min 348s Histogram: 1 0 0 0 0 0 0 0 0 0 348s Nghost: 51 ave 51 max 51 min 348s Histogram: 1 0 0 0 0 0 0 0 0 0 348s Neighs: 1150 ave 1150 max 1150 min 348s Histogram: 1 0 0 0 0 0 0 0 0 0 348s 348s Total # of neighbors = 1150 348s Ave neighs/atom = 2.7380952 348s Neighbor list builds = 563 348s Dangerous builds = 0 348s Total wall time: 0:00:00 348s run: OK 348s autopkgtest [19:02:45]: test flow: -----------------------] 349s autopkgtest [19:02:46]: test flow: - - - - - - - - - - results - - - - - - - - - - 349s flow PASS 349s autopkgtest [19:02:46]: test friction: preparing testbed 350s Reading package lists... 350s Building dependency tree... 350s Reading state information... 351s Starting pkgProblemResolver with broken count: 0 351s Starting 2 pkgProblemResolver with broken count: 0 351s Done 351s The following NEW packages will be installed: 351s autopkgtest-satdep 351s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 351s Need to get 0 B/708 B of archives. 351s After this operation, 0 B of additional disk space will be used. 351s Get:1 /tmp/autopkgtest.XBSDBP/5-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [708 B] 351s Selecting previously unselected package autopkgtest-satdep. 351s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55755 files and directories currently installed.) 351s Preparing to unpack .../5-autopkgtest-satdep.deb ... 351s Unpacking autopkgtest-satdep (0) ... 351s Setting up autopkgtest-satdep (0) ... 353s (Reading database ... 55755 files and directories currently installed.) 353s Removing autopkgtest-satdep (0) ... 353s autopkgtest [19:02:50]: test friction: [----------------------- 354s LAMMPS (7 Feb 2024 - Update 1) 354s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 354s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 354s using 1 OpenMP thread(s) per MPI task 354s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 354s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 354s 2 by 1 by 1 MPI processor grid 354s Created 750 atoms 354s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 354s create_atoms CPU = 0.001 seconds 354s Created 750 atoms 354s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 354s create_atoms CPU = 0.000 seconds 354s Created 112 atoms 354s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 354s create_atoms CPU = 0.001 seconds 354s Created 112 atoms 354s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 354s create_atoms CPU = 0.001 seconds 354s 750 atoms in group lo 354s 862 atoms in group lo 354s 750 atoms in group hi 354s 862 atoms in group hi 354s 150 atoms in group lo-fixed 354s 150 atoms in group hi-fixed 354s 300 atoms in group boundary 354s 1424 atoms in group mobile 354s Setting atom values ... 354s 150 settings made for type 354s Setting atom values ... 354s 150 settings made for type 354s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 354s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 354s Neighbor list info ... 354s update: every = 1 steps, delay = 5 steps, check = yes 354s max neighbors/atom: 2000, page size: 100000 354s master list distance cutoff = 2.8 354s ghost atom cutoff = 2.8 354s binsize = 1.4, bins = 41 31 1 354s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 354s (1) pair lj/cut, perpetual 354s attributes: half, newton on 354s pair build: half/bin/atomonly/newton 354s stencil: half/bin/2d 354s bin: standard 354s Setting up Verlet run ... 354s Unit style : lj 354s Current step : 0 354s Time step : 0.0025 354s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 354s Step Temp E_pair E_mol TotEng Press Volume 354s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 354s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 355s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 355s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 356s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 356s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 357s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 358s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 358s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 359s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 359s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 360s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 360s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 361s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 362s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 362s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 363s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 363s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 364s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 364s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 365s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 365s Loop time of 11.31 on 2 procs for 20000 steps with 1724 atoms 365s 365s Performance: 381963.934 tau/day, 1768.352 timesteps/s, 3.049 Matom-step/s 365s 45.4% CPU use with 2 MPI tasks x 1 OpenMP threads 365s 365s MPI task timing breakdown: 365s Section | min time | avg time | max time |%varavg| %total 365s --------------------------------------------------------------- 365s Pair | 4.1709 | 4.4842 | 4.7975 | 14.8 | 39.65 365s Neigh | 0.19458 | 0.21039 | 0.22619 | 3.4 | 1.86 365s Comm | 5.7273 | 6.0746 | 6.4219 | 14.1 | 53.71 365s Output | 0.0021592 | 0.0041226 | 0.0060861 | 3.1 | 0.04 365s Modify | 0.23981 | 0.25573 | 0.27166 | 3.1 | 2.26 365s Other | | 0.2809 | | | 2.48 365s 365s Nlocal: 862 ave 874 max 850 min 365s Histogram: 1 0 0 0 0 0 0 0 0 1 365s Nghost: 165.5 ave 166 max 165 min 365s Histogram: 1 0 0 0 0 0 0 0 0 1 365s Neighs: 7198 ave 7283 max 7113 min 365s Histogram: 1 0 0 0 0 0 0 0 0 1 365s 365s Total # of neighbors = 14396 365s Ave neighs/atom = 8.350348 365s Neighbor list builds = 720 365s Dangerous builds = 0 365s Total wall time: 0:00:11 365s LAMMPS (7 Feb 2024 - Update 1) 375s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 375s using 1 OpenMP thread(s) per MPI task 375s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 375s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 375s 1 by 1 by 1 MPI processor grid 375s Created 750 atoms 375s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 375s create_atoms CPU = 0.001 seconds 375s Created 750 atoms 375s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 375s create_atoms CPU = 0.000 seconds 375s Created 112 atoms 375s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 375s create_atoms CPU = 0.000 seconds 375s Created 112 atoms 375s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 375s create_atoms CPU = 0.000 seconds 375s 750 atoms in group lo 375s 862 atoms in group lo 375s 750 atoms in group hi 375s 862 atoms in group hi 375s 150 atoms in group lo-fixed 375s 150 atoms in group hi-fixed 375s 300 atoms in group boundary 375s 1424 atoms in group mobile 375s Setting atom values ... 375s 150 settings made for type 375s Setting atom values ... 375s 150 settings made for type 375s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 375s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 375s Neighbor list info ... 375s update: every = 1 steps, delay = 5 steps, check = yes 375s max neighbors/atom: 2000, page size: 100000 375s master list distance cutoff = 2.8 375s ghost atom cutoff = 2.8 375s binsize = 1.4, bins = 41 31 1 375s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 375s (1) pair lj/cut, perpetual 375s attributes: half, newton on 375s pair build: half/bin/atomonly/newton 375s stencil: half/bin/2d 375s bin: standard 375s Setting up Verlet run ... 375s Unit style : lj 375s Current step : 0 375s Time step : 0.0025 375s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 375s Step Temp E_pair E_mol TotEng Press Volume 375s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 375s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 375s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 375s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 375s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 375s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 375s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 375s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 375s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 375s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 375s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 375s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 375s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 375s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 375s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 375s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 375s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 375s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 375s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 375s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 375s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 375s Loop time of 9.98286 on 1 procs for 20000 steps with 1724 atoms 375s 375s Performance: 432741.770 tau/day, 2003.434 timesteps/s, 3.454 Matom-step/s 375s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 375s 375s MPI task timing breakdown: 375s Section | min time | avg time | max time |%varavg| %total 375s --------------------------------------------------------------- 375s Pair | 8.9061 | 8.9061 | 8.9061 | 0.0 | 89.21 375s Neigh | 0.41157 | 0.41157 | 0.41157 | 0.0 | 4.12 375s Comm | 0.034021 | 0.034021 | 0.034021 | 0.0 | 0.34 375s Output | 0.0011093 | 0.0011093 | 0.0011093 | 0.0 | 0.01 375s Modify | 0.5 | 0.5 | 0.5 | 0.0 | 5.01 375s Other | | 0.1301 | | | 1.30 375s 375s Nlocal: 1724 ave 1724 max 1724 min 375s Histogram: 1 0 0 0 0 0 0 0 0 0 375s Nghost: 145 ave 145 max 145 min 375s Histogram: 1 0 0 0 0 0 0 0 0 0 375s Neighs: 14397 ave 14397 max 14397 min 375s Histogram: 1 0 0 0 0 0 0 0 0 0 375s 375s Total # of neighbors = 14397 375s Ave neighs/atom = 8.3509281 375s Neighbor list builds = 723 375s Dangerous builds = 0 375s Total wall time: 0:00:09 375s run: OK 375s autopkgtest [19:03:12]: test friction: -----------------------] 376s friction PASS 376s autopkgtest [19:03:13]: test friction: - - - - - - - - - - results - - - - - - - - - - 376s autopkgtest [19:03:13]: test hugo: preparing testbed 383s Reading package lists... 383s Building dependency tree... 383s Reading state information... 383s Starting pkgProblemResolver with broken count: 0 383s Starting 2 pkgProblemResolver with broken count: 0 383s Done 383s The following NEW packages will be installed: 383s autopkgtest-satdep 383s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 383s Need to get 0 B/704 B of archives. 383s After this operation, 0 B of additional disk space will be used. 383s Get:1 /tmp/autopkgtest.XBSDBP/6-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 383s Selecting previously unselected package autopkgtest-satdep. 384s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55755 files and directories currently installed.) 384s Preparing to unpack .../6-autopkgtest-satdep.deb ... 384s Unpacking autopkgtest-satdep (0) ... 384s Setting up autopkgtest-satdep (0) ... 385s (Reading database ... 55755 files and directories currently installed.) 385s Removing autopkgtest-satdep (0) ... 386s autopkgtest [19:03:23]: test hugo: [----------------------- 386s LAMMPS (7 Feb 2024 - Update 1) 386s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 386s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 386s using 1 OpenMP thread(s) per MPI task 386s Lattice spacing in x,y,z = 1.4142135 2 2 386s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 386s 1 by 1 by 2 MPI processor grid 386s Created 1000 atoms 386s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 386s create_atoms CPU = 0.001 seconds 386s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 386s Neighbor list info ... 386s update: every = 1 steps, delay = 0 steps, check = yes 386s max neighbors/atom: 2000, page size: 100000 386s master list distance cutoff = 1.8475372 386s ghost atom cutoff = 1.8475372 386s binsize = 0.92376862, bins = 8 11 11 386s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 386s (1) pair lj/cubic, perpetual 386s attributes: half, newton on 386s pair build: half/bin/atomonly/newton 386s stencil: half/bin/3d 386s bin: standard 386s Setting up cg style minimization ... 386s Unit style : lj 386s Current step : 0 386s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 386s (src/min.cpp:219) 386s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 386s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 386s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 386s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 386s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 386s Loop time of 0.121153 on 2 procs for 134 steps with 1000 atoms 386s 386s 44.4% CPU use with 2 MPI tasks x 1 OpenMP threads 386s 386s Minimization stats: 386s Stopping criterion = force tolerance 386s Energy initial, next-to-last, final = 386s -6.29375358358574 -6.33442531515467 -6.33442531515467 386s Force two-norm initial, final = 3395.2895 5.526433e-10 386s Force max component initial, final = 1960.2713 3.2059964e-10 386s Final line search alpha, max atom move = 1 3.2059964e-10 386s Iterations, force evaluations = 134 137 386s 386s MPI task timing breakdown: 386s Section | min time | avg time | max time |%varavg| %total 386s --------------------------------------------------------------- 386s Pair | 0.039333 | 0.041971 | 0.04461 | 1.3 | 34.64 386s Neigh | 0.00056017 | 0.00060689 | 0.00065362 | 0.0 | 0.50 386s Comm | 0.054686 | 0.057391 | 0.060097 | 1.1 | 47.37 386s Output | 0.0001563 | 0.00016023 | 0.00016415 | 0.0 | 0.13 386s Modify | 0 | 0 | 0 | 0.0 | 0.00 386s Other | | 0.02102 | | | 17.35 386s 386s Nlocal: 500 ave 550 max 450 min 386s Histogram: 1 0 0 0 0 0 0 0 0 1 386s Nghost: 1214 ave 1264 max 1164 min 386s Histogram: 1 0 0 0 0 0 0 0 0 1 386s Neighs: 10500 ave 11550 max 9450 min 386s Histogram: 1 0 0 0 0 0 0 0 0 1 386s 386s Total # of neighbors = 21000 386s Ave neighs/atom = 21 386s Neighbor list builds = 1 386s Dangerous builds = 0 386s System init for write_restart ... 386s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 386s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 386s using 1 OpenMP thread(s) per MPI task 386s Reading restart file ... 386s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 386s restoring atom style atomic from restart 386s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 386s 1 by 1 by 2 MPI processor grid 386s restoring pair style lj/cubic from restart 386s 1000 atoms 386s read_restart CPU = 0.002 seconds 386s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 386s Neighbor list info ... 386s update: every = 1 steps, delay = 0 steps, check = yes 386s max neighbors/atom: 2000, page size: 100000 386s master list distance cutoff = 1.7475372 386s ghost atom cutoff = 1.7475372 386s binsize = 0.87376862, bins = 8 12 12 386s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 386s (1) pair lj/cubic, perpetual 386s attributes: half, newton on 386s pair build: half/bin/atomonly/newton 386s stencil: half/bin/3d 386s bin: standard 386s Setting up Verlet run ... 386s Unit style : lj 386s Current step : 0 386s Time step : 0.001 386s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 386s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 386s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 387s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 388s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 389s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 390s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 391s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 392s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 393s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 394s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 394s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 395s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 395s Loop time of 9.18854 on 2 procs for 10000 steps with 1000 atoms 395s 395s Performance: 94030.161 tau/day, 1088.312 timesteps/s, 1.088 Matom-step/s 395s 45.1% CPU use with 2 MPI tasks x 1 OpenMP threads 395s 395s MPI task timing breakdown: 395s Section | min time | avg time | max time |%varavg| %total 395s --------------------------------------------------------------- 395s Pair | 3.3595 | 3.3621 | 3.3646 | 0.1 | 36.59 395s Neigh | 0.11688 | 0.11956 | 0.12224 | 0.8 | 1.30 395s Comm | 4.4292 | 4.4293 | 4.4295 | 0.0 | 48.20 395s Output | 0.0015585 | 0.0021481 | 0.0027377 | 1.3 | 0.02 395s Modify | 1.083 | 1.0895 | 1.0961 | 0.6 | 11.86 395s Other | | 0.1859 | | | 2.02 395s 395s Nlocal: 500 ave 509 max 491 min 395s Histogram: 1 0 0 0 0 0 0 0 0 1 395s Nghost: 1346.5 ave 1369 max 1324 min 395s Histogram: 1 0 0 0 0 0 0 0 0 1 395s Neighs: 10311.5 ave 10391 max 10232 min 395s Histogram: 1 0 0 0 0 0 0 0 0 1 395s 395s Total # of neighbors = 20623 395s Ave neighs/atom = 20.623 395s Neighbor list builds = 205 395s Dangerous builds = 0 395s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 395s using 1 OpenMP thread(s) per MPI task 395s Reading restart file ... 395s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 395s restoring atom style atomic from restart 395s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 395s 1 by 1 by 2 MPI processor grid 396s restoring pair style lj/cubic from restart 396s 1000 atoms 396s read_restart CPU = 0.002 seconds 396s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 396s Neighbor list info ... 396s update: every = 1 steps, delay = 0 steps, check = yes 396s max neighbors/atom: 2000, page size: 100000 396s master list distance cutoff = 1.7475372 396s ghost atom cutoff = 1.7475372 396s binsize = 0.87376862, bins = 8 12 12 396s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 396s (1) pair lj/cubic, perpetual 396s attributes: half, newton on 396s pair build: half/bin/atomonly/newton 396s stencil: half/bin/3d 396s bin: standard 396s Setting up Verlet run ... 396s Unit style : lj 396s Current step : 0 396s Time step : 0.001 396s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 396s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 396s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 396s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 397s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 398s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 399s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 400s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 400s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 401s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 402s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 403s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 404s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 404s Loop time of 8.41467 on 2 procs for 10000 steps with 1000 atoms 404s 404s Performance: 102677.874 tau/day, 1188.401 timesteps/s, 1.188 Matom-step/s 404s 44.5% CPU use with 2 MPI tasks x 1 OpenMP threads 404s 404s MPI task timing breakdown: 404s Section | min time | avg time | max time |%varavg| %total 404s --------------------------------------------------------------- 404s Pair | 2.9729 | 3.0287 | 3.0844 | 3.2 | 35.99 404s Neigh | 0.0057732 | 0.0068076 | 0.007842 | 1.3 | 0.08 404s Comm | 3.9663 | 4.015 | 4.0638 | 2.4 | 47.71 404s Output | 0.0022741 | 0.0025194 | 0.0027646 | 0.5 | 0.03 404s Modify | 1.1375 | 1.168 | 1.1985 | 2.8 | 13.88 404s Other | | 0.1937 | | | 2.30 404s 404s Nlocal: 500 ave 508 max 492 min 404s Histogram: 1 0 0 0 0 0 0 0 0 1 404s Nghost: 1214 ave 1222 max 1206 min 404s Histogram: 1 0 0 0 0 0 0 0 0 1 404s Neighs: 10500 ave 10668 max 10332 min 404s Histogram: 1 0 0 0 0 0 0 0 0 1 404s 404s Total # of neighbors = 21000 404s Ave neighs/atom = 21 404s Neighbor list builds = 10 404s Dangerous builds = 0 404s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 404s using 1 OpenMP thread(s) per MPI task 404s Reading restart file ... 404s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 404s restoring atom style atomic from restart 404s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 404s 1 by 1 by 2 MPI processor grid 404s restoring pair style lj/cubic from restart 404s 1000 atoms 404s read_restart CPU = 0.001 seconds 404s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 404s Neighbor list info ... 404s update: every = 1 steps, delay = 0 steps, check = yes 404s max neighbors/atom: 2000, page size: 100000 404s master list distance cutoff = 1.7475372 404s ghost atom cutoff = 1.7475372 404s binsize = 0.87376862, bins = 8 12 12 404s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 404s (1) pair lj/cubic, perpetual 404s attributes: half, newton on 404s pair build: half/bin/atomonly/newton 404s stencil: half/bin/3d 404s bin: standard 404s Setting up Verlet run ... 404s Unit style : lj 404s Current step : 0 404s Time step : 0.001 404s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 404s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 404s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 405s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 405s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 406s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 407s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 408s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 409s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 409s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 410s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 411s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 412s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 412s Loop time of 8.17832 on 2 procs for 10000 steps with 1000 atoms 412s 412s Performance: 105645.105 tau/day, 1222.744 timesteps/s, 1.223 Matom-step/s 412s 45.5% CPU use with 2 MPI tasks x 1 OpenMP threads 412s 412s MPI task timing breakdown: 412s Section | min time | avg time | max time |%varavg| %total 412s --------------------------------------------------------------- 412s Pair | 2.977 | 2.9798 | 2.9826 | 0.2 | 36.44 412s Neigh | 0.05757 | 0.05811 | 0.05865 | 0.2 | 0.71 412s Comm | 3.8415 | 3.8459 | 3.8504 | 0.2 | 47.03 412s Output | 0.0018253 | 0.0023462 | 0.002867 | 1.1 | 0.03 412s Modify | 1.1039 | 1.1054 | 1.1069 | 0.1 | 13.52 412s Other | | 0.1868 | | | 2.28 412s 412s Nlocal: 500 ave 510 max 490 min 412s Histogram: 1 0 0 0 0 0 0 0 0 1 412s Nghost: 1216.5 ave 1227 max 1206 min 412s Histogram: 1 0 0 0 0 0 0 0 0 1 412s Neighs: 10311 ave 10520 max 10102 min 412s Histogram: 1 0 0 0 0 0 0 0 0 1 412s 412s Total # of neighbors = 20622 412s Ave neighs/atom = 20.622 412s Neighbor list builds = 95 412s Dangerous builds = 0 412s Total wall time: 0:00:25 412s LAMMPS (7 Feb 2024 - Update 1) 412s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 412s using 1 OpenMP thread(s) per MPI task 412s Lattice spacing in x,y,z = 1.4142135 2 2 412s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 412s 1 by 1 by 1 MPI processor grid 412s Created 1000 atoms 412s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 412s create_atoms CPU = 0.001 seconds 412s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 412s Neighbor list info ... 412s update: every = 1 steps, delay = 0 steps, check = yes 412s max neighbors/atom: 2000, page size: 100000 412s master list distance cutoff = 1.8475372 412s ghost atom cutoff = 1.8475372 412s binsize = 0.92376862, bins = 8 11 11 412s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 412s (1) pair lj/cubic, perpetual 412s attributes: half, newton on 412s pair build: half/bin/atomonly/newton 412s stencil: half/bin/3d 412s bin: standard 412s Setting up cg style minimization ... 412s Unit style : lj 412s Current step : 0 412s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 412s (src/min.cpp:219) 412s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 412s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 412s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 412s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 412s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 412s Loop time of 0.0975433 on 1 procs for 134 steps with 1000 atoms 412s 412s 95.1% CPU use with 1 MPI tasks x 1 OpenMP threads 412s 412s Minimization stats: 412s Stopping criterion = force tolerance 412s Energy initial, next-to-last, final = 412s -6.29375358358556 -6.33442531515503 -6.33442531515503 412s Force two-norm initial, final = 3395.2895 5.6047601e-10 412s Force max component initial, final = 1960.2713 3.2666928e-10 412s Final line search alpha, max atom move = 1 3.2666928e-10 412s Iterations, force evaluations = 134 137 412s 412s MPI task timing breakdown: 412s Section | min time | avg time | max time |%varavg| %total 412s --------------------------------------------------------------- 412s Pair | 0.079713 | 0.079713 | 0.079713 | 0.0 | 81.72 412s Neigh | 0.0012454 | 0.0012454 | 0.0012454 | 0.0 | 1.28 412s Comm | 0.0013788 | 0.0013788 | 0.0013788 | 0.0 | 1.41 412s Output | 2.1909e-05 | 2.1909e-05 | 2.1909e-05 | 0.0 | 0.02 412s Modify | 0 | 0 | 0 | 0.0 | 0.00 412s Other | | 0.01518 | | | 15.57 412s 412s Nlocal: 1000 ave 1000 max 1000 min 412s Histogram: 1 0 0 0 0 0 0 0 0 0 412s Nghost: 1724 ave 1724 max 1724 min 412s Histogram: 1 0 0 0 0 0 0 0 0 0 412s Neighs: 21000 ave 21000 max 21000 min 412s Histogram: 1 0 0 0 0 0 0 0 0 0 412s 412s Total # of neighbors = 21000 412s Ave neighs/atom = 21 412s Neighbor list builds = 1 412s Dangerous builds = 0 412s System init for write_restart ... 412s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 412s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 412s using 1 OpenMP thread(s) per MPI task 412s Reading restart file ... 412s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 412s restoring atom style atomic from restart 412s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 412s 1 by 1 by 1 MPI processor grid 412s restoring pair style lj/cubic from restart 412s 1000 atoms 412s read_restart CPU = 0.000 seconds 412s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 412s Neighbor list info ... 412s update: every = 1 steps, delay = 0 steps, check = yes 412s max neighbors/atom: 2000, page size: 100000 412s master list distance cutoff = 1.7475372 412s ghost atom cutoff = 1.7475372 412s binsize = 0.87376862, bins = 8 12 12 412s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 421s (1) pair lj/cubic, perpetual 421s attributes: half, newton on 421s pair build: half/bin/atomonly/newton 421s stencil: half/bin/3d 421s bin: standard 421s Setting up Verlet run ... 421s Unit style : lj 421s Current step : 0 421s Time step : 0.001 421s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 421s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 421s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 421s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 421s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 421s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 421s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 421s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 421s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 421s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 421s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 421s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 421s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 421s Loop time of 8.5239 on 1 procs for 10000 steps with 1000 atoms 421s 421s Performance: 101362.031 tau/day, 1173.172 timesteps/s, 1.173 Matom-step/s 421s 95.1% CPU use with 1 MPI tasks x 1 OpenMP threads 421s 421s MPI task timing breakdown: 421s Section | min time | avg time | max time |%varavg| %total 421s --------------------------------------------------------------- 421s Pair | 7.1495 | 7.1495 | 7.1495 | 0.0 | 83.88 421s Neigh | 0.23488 | 0.23488 | 0.23488 | 0.0 | 2.76 421s Comm | 0.1394 | 0.1394 | 0.1394 | 0.0 | 1.64 421s Output | 0.00072225 | 0.00072225 | 0.00072225 | 0.0 | 0.01 421s Modify | 0.92809 | 0.92809 | 0.92809 | 0.0 | 10.89 421s Other | | 0.07133 | | | 0.84 421s 421s Nlocal: 1000 ave 1000 max 1000 min 421s Histogram: 1 0 0 0 0 0 0 0 0 0 421s Nghost: 1886 ave 1886 max 1886 min 421s Histogram: 1 0 0 0 0 0 0 0 0 0 421s Neighs: 20874 ave 20874 max 20874 min 421s Histogram: 1 0 0 0 0 0 0 0 0 0 421s 421s Total # of neighbors = 20874 421s Ave neighs/atom = 20.874 421s Neighbor list builds = 188 421s Dangerous builds = 0 421s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 421s using 1 OpenMP thread(s) per MPI task 421s Reading restart file ... 421s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 421s restoring atom style atomic from restart 421s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 421s 1 by 1 by 1 MPI processor grid 421s restoring pair style lj/cubic from restart 421s 1000 atoms 421s read_restart CPU = 0.001 seconds 421s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 421s Neighbor list info ... 428s update: every = 1 steps, delay = 0 steps, check = yes 428s max neighbors/atom: 2000, page size: 100000 428s master list distance cutoff = 1.7475372 428s ghost atom cutoff = 1.7475372 428s binsize = 0.87376862, bins = 8 12 12 428s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 428s (1) pair lj/cubic, perpetual 428s attributes: half, newton on 428s pair build: half/bin/atomonly/newton 428s stencil: half/bin/3d 428s bin: standard 428s Setting up Verlet run ... 428s Unit style : lj 428s Current step : 0 428s Time step : 0.001 428s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 428s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 428s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 428s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 428s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 428s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 428s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 428s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 428s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 428s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 428s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 428s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 428s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 428s Loop time of 7.09848 on 1 procs for 10000 steps with 1000 atoms 428s 428s Performance: 121716.193 tau/day, 1408.752 timesteps/s, 1.409 Matom-step/s 428s 96.4% CPU use with 1 MPI tasks x 1 OpenMP threads 428s 428s MPI task timing breakdown: 428s Section | min time | avg time | max time |%varavg| %total 428s --------------------------------------------------------------- 428s Pair | 6.035 | 6.035 | 6.035 | 0.0 | 85.02 428s Neigh | 0.01283 | 0.01283 | 0.01283 | 0.0 | 0.18 428s Comm | 0.11284 | 0.11284 | 0.11284 | 0.0 | 1.59 428s Output | 0.00066952 | 0.00066952 | 0.00066952 | 0.0 | 0.01 428s Modify | 0.87946 | 0.87946 | 0.87946 | 0.0 | 12.39 428s Other | | 0.05771 | | | 0.81 428s 428s Nlocal: 1000 ave 1000 max 1000 min 428s Histogram: 1 0 0 0 0 0 0 0 0 0 428s Nghost: 1724 ave 1724 max 1724 min 428s Histogram: 1 0 0 0 0 0 0 0 0 0 428s Neighs: 21000 ave 21000 max 21000 min 428s Histogram: 1 0 0 0 0 0 0 0 0 0 428s 428s Total # of neighbors = 21000 428s Ave neighs/atom = 21 428s Neighbor list builds = 11 428s Dangerous builds = 0 428s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 428s using 1 OpenMP thread(s) per MPI task 428s Reading restart file ... 428s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 428s restoring atom style atomic from restart 435s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 435s 1 by 1 by 1 MPI processor grid 435s restoring pair style lj/cubic from restart 435s 1000 atoms 435s read_restart CPU = 0.001 seconds 435s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 435s Neighbor list info ... 435s update: every = 1 steps, delay = 0 steps, check = yes 435s max neighbors/atom: 2000, page size: 100000 435s master list distance cutoff = 1.7475372 435s ghost atom cutoff = 1.7475372 435s binsize = 0.87376862, bins = 8 12 12 435s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 435s (1) pair lj/cubic, perpetual 435s attributes: half, newton on 435s pair build: half/bin/atomonly/newton 435s stencil: half/bin/3d 435s bin: standard 435s Setting up Verlet run ... 435s Unit style : lj 435s Current step : 0 435s Time step : 0.001 435s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 435s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 435s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 435s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 435s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 435s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 435s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 435s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 435s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 435s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 435s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 435s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 435s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 435s Loop time of 7.12261 on 1 procs for 10000 steps with 1000 atoms 435s 435s Performance: 121303.888 tau/day, 1403.980 timesteps/s, 1.404 Matom-step/s 435s 97.4% CPU use with 1 MPI tasks x 1 OpenMP threads 435s 435s MPI task timing breakdown: 435s Section | min time | avg time | max time |%varavg| %total 435s --------------------------------------------------------------- 435s Pair | 5.99 | 5.99 | 5.99 | 0.0 | 84.10 435s Neigh | 0.11329 | 0.11329 | 0.11329 | 0.0 | 1.59 435s Comm | 0.10889 | 0.10889 | 0.10889 | 0.0 | 1.53 435s Output | 0.0006744 | 0.0006744 | 0.0006744 | 0.0 | 0.01 435s Modify | 0.85414 | 0.85414 | 0.85414 | 0.0 | 11.99 435s Other | | 0.05562 | | | 0.78 435s 435s Nlocal: 1000 ave 1000 max 1000 min 435s Histogram: 1 0 0 0 0 0 0 0 0 0 435s Nghost: 1724 ave 1724 max 1724 min 435s Histogram: 1 0 0 0 0 0 0 0 0 0 435s Neighs: 20654 ave 20654 max 20654 min 435s Histogram: 1 0 0 0 0 0 0 0 0 0 435s 435s Total # of neighbors = 20654 435s Ave neighs/atom = 20.654 435s Neighbor list builds = 94 435s Dangerous builds = 0 435s Total wall time: 0:00:22 435s run: OK 435s autopkgtest [19:04:12]: test hugo: -----------------------] 436s autopkgtest [19:04:13]: test hugo: - - - - - - - - - - results - - - - - - - - - - 436s hugo PASS 436s autopkgtest [19:04:13]: test command1: preparing testbed 552s autopkgtest [19:06:09]: testbed dpkg architecture: s390x 552s autopkgtest [19:06:09]: testbed apt version: 2.7.12 552s autopkgtest [19:06:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 553s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 553s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 553s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3809 kB] 554s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [501 kB] 554s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 554s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [679 kB] 554s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 554s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 554s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 554s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4058 kB] 554s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 554s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [45.3 kB] 554s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 556s Fetched 9282 kB in 2s (4000 kB/s) 556s Reading package lists... 559s Reading package lists... 559s Building dependency tree... 559s Reading state information... 559s Calculating upgrade... 559s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 559s Reading package lists... 559s Building dependency tree... 559s Reading state information... 559s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 560s Unknown architecture, assuming PC-style ttyS0 560s sh: Attempting to set up Debian/Ubuntu apt sources automatically 560s sh: Distribution appears to be Ubuntu 561s Reading package lists... 561s Building dependency tree... 561s Reading state information... 561s eatmydata is already the newest version (131-1). 561s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 561s Reading package lists... 561s Building dependency tree... 561s Reading state information... 561s dbus is already the newest version (1.14.10-4ubuntu1). 561s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 561s Reading package lists... 561s Building dependency tree... 561s Reading state information... 562s rng-tools-debian is already the newest version (2.4). 562s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 562s Reading package lists... 562s Building dependency tree... 562s Reading state information... 562s The following packages will be REMOVED: 562s cloud-init* python3-configobj* python3-debconf* 562s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 562s After this operation, 3252 kB disk space will be freed. 562s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 562s Removing cloud-init (24.1.1-0ubuntu1) ... 563s Removing python3-configobj (5.0.8-3) ... 563s Removing python3-debconf (1.5.86) ... 563s Processing triggers for man-db (2.12.0-3) ... 563s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51782 files and directories currently installed.) 563s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 564s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 564s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 564s invoke-rc.d: policy-rc.d denied execution of try-restart. 564s Reading package lists... 564s Building dependency tree... 564s Reading state information... 564s linux-generic is already the newest version (6.8.0-11.11+1). 564s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 565s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 565s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 565s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 566s Reading package lists... 566s Reading package lists... 567s Building dependency tree... 567s Reading state information... 567s Calculating upgrade... 567s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 567s Reading package lists... 567s Building dependency tree... 567s Reading state information... 567s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 567s autopkgtest [19:06:24]: rebooting testbed after setup commands that affected boot 587s Reading package lists... 588s Building dependency tree... 588s Reading state information... 588s Starting pkgProblemResolver with broken count: 0 588s Starting 2 pkgProblemResolver with broken count: 0 588s Done 588s The following additional packages will be installed: 588s autoconf automake autotools-dev cpp-12 fontconfig-config fonts-dejavu-core 588s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 libasan8 libatomic1 588s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdeflate0 588s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 588s libevent-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 588s libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfontconfig1 588s libfreetype6 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 588s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 588s libglx0 libgomp1 libhdf5-103-1 libhdf5-hl-100 libhwloc-dev libhwloc-plugins 588s libhwloc15 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 588s libjs-jquery libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev 588s liblammps0 liblapack3 libllvm17 libltdl-dev libltdl7 libmpc3 libmunge2 588s libnetcdf19 libnl-3-dev libnl-route-3-dev libnsl-dev libnuma-dev libogg0 588s libopengl0 libopenmpi-dev libopenmpi3 libpciaccess0 libpixman-1-0 588s libpmix-dev libpmix2 libpnetcdf0d libproj25 libpython3.12 librdmacm1 588s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 588s libtheora0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libvoro++1 libvtk9.1 588s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 588s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 588s libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 588s libxss1 libxxf86vm1 linux-libc-dev m4 mpi-default-bin mpi-default-dev 588s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 588s rpcsvc-proto x11-common zlib1g-dev 588s Suggested packages: 588s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-12-locales 588s cpp-12-doc gcc-12-multilib gcc-12-doc gfortran-12-multilib gfortran-12-doc 588s libcoarrays-dev glibc-doc manpages-dev libfftw3-bin libfftw3-dev glew-utils 588s libjs-jquery-ui-docs libtool-doc openmpi-doc proj-bin tcl8.6 tk8.6 vtk9-doc 588s vtk9-examples m4-doc opencl-icd gfortran | fortran-compiler 588s Recommended packages: 588s manpages manpages-dev libc-devtools libgl1-amber-dri javascript-common 588s lammps-doc libtool libcoarrays-openmpi-dev mesa-vulkan-drivers | vulkan-icd 588s python3-mpi4py 588s The following NEW packages will be installed: 588s autoconf automake autopkgtest-satdep autotools-dev cpp-12 fontconfig-config 588s fonts-dejavu-core fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 588s libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 588s libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 588s libdrm-nouveau2 libdrm-radeon1 libevent-2.1-7 libevent-dev 588s libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 588s libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgcc-12-dev 588s libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 588s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 588s libhdf5-103-1 libhdf5-hl-100 libhwloc-dev libhwloc-plugins libhwloc15 588s libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 588s libjs-jquery libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev 588s liblammps0 liblapack3 libllvm17 libltdl-dev libltdl7 libmpc3 libmunge2 588s libnetcdf19 libnl-3-dev libnl-route-3-dev libnsl-dev libnuma-dev libogg0 588s libopengl0 libopenmpi-dev libopenmpi3 libpciaccess0 libpixman-1-0 588s libpmix-dev libpmix2 libpnetcdf0d libproj25 libpython3.12 librdmacm1 588s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 588s libtheora0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libvoro++1 libvtk9.1 588s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 588s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 588s libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 588s libxss1 libxxf86vm1 linux-libc-dev m4 mpi-default-bin mpi-default-dev 588s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 588s rpcsvc-proto x11-common zlib1g-dev 588s 0 upgraded, 130 newly installed, 0 to remove and 0 not upgraded. 588s Need to get 154 MB/154 MB of archives. 588s After this operation, 620 MB of additional disk space will be used. 588s Get:1 /tmp/autopkgtest.XBSDBP/7-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [712 B] 588s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x m4 s390x 1.4.19-4 [255 kB] 588s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x autoconf all 2.71-3 [339 kB] 589s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x autotools-dev all 20220109.1 [44.9 kB] 589s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB] 589s Get:6 http://ftpmaster.internal/ubuntu noble/universe s390x gcc-12-base s390x 12.3.0-15ubuntu1 [45.5 kB] 589s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 589s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 589s Get:9 http://ftpmaster.internal/ubuntu noble/universe s390x cpp-12 s390x 12.3.0-15ubuntu1 [8176 kB] 589s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 589s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 589s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 589s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 589s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 589s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 590s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 590s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 590s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 590s Get:19 http://ftpmaster.internal/ubuntu noble/universe s390x libgcc-12-dev s390x 12.3.0-15ubuntu1 [857 kB] 590s Get:20 http://ftpmaster.internal/ubuntu noble/universe s390x gcc-12 s390x 12.3.0-15ubuntu1 [16.2 MB] 590s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 590s Get:22 http://ftpmaster.internal/ubuntu noble/universe s390x libgfortran-12-dev s390x 12.3.0-15ubuntu1 [517 kB] 590s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 590s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 591s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 591s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 591s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 591s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 591s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 591s Get:30 http://ftpmaster.internal/ubuntu noble/universe s390x gfortran-12 s390x 12.3.0-15ubuntu1 [8590 kB] 591s Get:31 http://ftpmaster.internal/ubuntu noble/universe s390x libaec0 s390x 1.1.2-1 [25.7 kB] 591s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 591s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 591s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 591s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 591s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 591s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 591s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 591s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 591s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 591s Get:41 http://ftpmaster.internal/ubuntu noble/universe s390x libdouble-conversion3 s390x 3.3.0-1 [39.6 kB] 591s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-amdgpu1 s390x 2.4.120-2 [21.1 kB] 591s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-nouveau2 s390x 2.4.120-2 [18.5 kB] 591s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-radeon1 s390x 2.4.120-2 [22.7 kB] 591s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libevent-2.1-7 s390x 2.1.12-stable-9 [144 kB] 591s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libevent-extra-2.1-7 s390x 2.1.12-stable-9 [63.6 kB] 591s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libevent-pthreads-2.1-7 s390x 2.1.12-stable-9 [7692 B] 591s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libevent-openssl-2.1-7 s390x 2.1.12-stable-9 [15.0 kB] 591s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libevent-dev s390x 2.1.12-stable-9 [275 kB] 591s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x librdmacm1 s390x 50.0-1 [73.9 kB] 591s Get:51 http://ftpmaster.internal/ubuntu noble/universe s390x libfabric1 s390x 1.17.0-3 [513 kB] 591s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-double3 s390x 3.3.10-1ubuntu1 [465 kB] 591s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libvulkan1 s390x 1.3.275.0-1 [155 kB] 591s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libglapi-mesa s390x 24.0.1-1ubuntu1 [68.7 kB] 591s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libllvm17 s390x 1:17.0.6-5build1 [31.2 MB] 592s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri3-0 s390x 1.15-1 [7270 B] 592s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libgl1-mesa-dri s390x 24.0.1-1ubuntu1 [7184 kB] 592s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libglvnd0 s390x 1.7.0-1 [106 kB] 592s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libx11-xcb1 s390x 2:1.8.7-1 [7778 B] 592s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri2-0 s390x 1.15-1 [7426 B] 592s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-glx0 s390x 1.15-1 [25.8 kB] 592s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-present0 s390x 1.15-1 [5752 B] 592s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-randr0 s390x 1.15-1 [19.0 kB] 592s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-sync1 s390x 1.15-1 [9392 B] 592s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xfixes0 s390x 1.15-1 [10.5 kB] 592s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libxfixes3 s390x 1:6.0.0-2 [10.6 kB] 592s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libxshmfence1 s390x 1.3-1build4 [5334 B] 592s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libxxf86vm1 s390x 1:1.1.4-1build3 [9900 B] 592s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libglx-mesa0 s390x 24.0.1-1ubuntu1 [182 kB] 592s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libglx0 s390x 1.7.0-1 [31.4 kB] 592s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libgl1 s390x 1.7.0-1 [137 kB] 592s Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2 [40.2 kB] 592s Get:73 http://ftpmaster.internal/ubuntu noble/universe s390x libglew2.2 s390x 2.2.0-4 [202 kB] 592s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x libsz2 s390x 1.1.2-1 [5346 B] 592s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-103-1 s390x 1.10.10+repack-3ubuntu1 [1425 kB] 592s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-100 s390x 1.10.10+repack-3ubuntu1 [57.5 kB] 592s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc15 s390x 2.10.0-1 [174 kB] 592s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 592s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 592s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 592s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 592s Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libjsoncpp25 s390x 1.9.5-6 [75.5 kB] 592s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libkim-api2 s390x 2.3.0-1 [544 kB] 592s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 592s Get:85 http://ftpmaster.internal/ubuntu noble/universe s390x libnetcdf19 s390x 1:4.9.2-3ubuntu1 [506 kB] 592s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libmunge2 s390x 0.5.15-3ubuntu1 [17.3 kB] 592s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libpciaccess0 s390x 0.17-3 [18.5 kB] 592s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu1 [11.7 kB] 592s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1 [39.1 kB] 592s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-plugins s390x 2.10.0-1 [16.1 kB] 592s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix2 s390x 5.0.1-4 [722 kB] 592s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi3 s390x 4.1.6-5ubuntu1 [3024 kB] 592s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x libpnetcdf0d s390x 1.12.3-2 [820 kB] 592s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12 s390x 3.12.2-1 [2561 kB] 592s Get:95 http://ftpmaster.internal/ubuntu noble/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 592s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x libogg0 s390x 1.3.5-3 [22.7 kB] 592s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libopengl0 s390x 1.7.0-1 [45.9 kB] 592s Get:98 http://ftpmaster.internal/ubuntu noble/universe s390x proj-data all 9.3.1-1 [7867 kB] 593s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 593s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 593s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 593s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 593s Get:103 http://ftpmaster.internal/ubuntu noble/universe s390x libproj25 s390x 9.3.1-1 [1368 kB] 593s Get:104 http://ftpmaster.internal/ubuntu noble/universe s390x libtbbmalloc2 s390x 2021.11.0-2ubuntu2 [68.0 kB] 593s Get:105 http://ftpmaster.internal/ubuntu noble/universe s390x libtbbbind-2-5 s390x 2021.11.0-2ubuntu2 [16.7 kB] 593s Get:106 http://ftpmaster.internal/ubuntu noble/universe s390x libtbb12 s390x 2021.11.0-2ubuntu2 [118 kB] 593s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 593s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libtheora0 s390x 1.1.1+dfsg.1-16.1 [262 kB] 593s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 593s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 593s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 593s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 593s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x libvtk9.1 s390x 9.1.0+really9.1.0+dfsg2-7build1 [22.1 MB] 594s Get:114 http://ftpmaster.internal/ubuntu noble/universe s390x liblammps0 s390x 20240207+dfsg-1 [7953 kB] 595s Get:115 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-common all 4.1.6-5ubuntu1 [178 kB] 595s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libnl-3-dev s390x 3.7.0-0.3 [104 kB] 595s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libnl-route-3-dev s390x 3.7.0-0.3 [218 kB] 595s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libibverbs-dev s390x 50.0-2 [717 kB] 595s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libnuma-dev s390x 2.0.18-1 [38.9 kB] 595s Get:120 http://ftpmaster.internal/ubuntu noble/main s390x libltdl7 s390x 2.4.7-7 [41.6 kB] 595s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libltdl-dev s390x 2.4.7-7 [170 kB] 595s Get:122 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-dev s390x 2.10.0-1 [270 kB] 595s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 595s Get:124 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix-dev s390x 5.0.1-4 [4027 kB] 595s Get:125 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-bin s390x 4.1.6-5ubuntu1 [92.5 kB] 595s Get:126 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi-dev s390x 4.1.6-5ubuntu1 [1571 kB] 595s Get:127 http://ftpmaster.internal/ubuntu noble/universe s390x mpi-default-dev s390x 1.15 [3118 B] 595s Get:128 http://ftpmaster.internal/ubuntu noble/universe s390x liblammps-dev s390x 20240207+dfsg-1 [112 kB] 595s Get:129 http://ftpmaster.internal/ubuntu noble/universe s390x mpi-default-bin s390x 1.15 [2338 B] 595s Get:130 http://ftpmaster.internal/ubuntu noble/universe s390x python3-lammps s390x 20240207+dfsg-1 [70.4 kB] 596s Fetched 154 MB in 7s (21.9 MB/s) 596s Selecting previously unselected package m4. 596s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51727 files and directories currently installed.) 596s Preparing to unpack .../000-m4_1.4.19-4_s390x.deb ... 596s Unpacking m4 (1.4.19-4) ... 596s Selecting previously unselected package autoconf. 596s Preparing to unpack .../001-autoconf_2.71-3_all.deb ... 596s Unpacking autoconf (2.71-3) ... 596s Selecting previously unselected package autotools-dev. 596s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 596s Unpacking autotools-dev (20220109.1) ... 596s Selecting previously unselected package automake. 596s Preparing to unpack .../003-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 596s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 596s Selecting previously unselected package gcc-12-base:s390x. 596s Preparing to unpack .../004-gcc-12-base_12.3.0-15ubuntu1_s390x.deb ... 596s Unpacking gcc-12-base:s390x (12.3.0-15ubuntu1) ... 596s Selecting previously unselected package libisl23:s390x. 596s Preparing to unpack .../005-libisl23_0.26-3_s390x.deb ... 596s Unpacking libisl23:s390x (0.26-3) ... 596s Selecting previously unselected package libmpc3:s390x. 596s Preparing to unpack .../006-libmpc3_1.3.1-1_s390x.deb ... 596s Unpacking libmpc3:s390x (1.3.1-1) ... 596s Selecting previously unselected package cpp-12. 596s Preparing to unpack .../007-cpp-12_12.3.0-15ubuntu1_s390x.deb ... 596s Unpacking cpp-12 (12.3.0-15ubuntu1) ... 596s Selecting previously unselected package fonts-dejavu-mono. 596s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 596s Unpacking fonts-dejavu-mono (2.37-8) ... 596s Selecting previously unselected package fonts-dejavu-core. 596s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 596s Unpacking fonts-dejavu-core (2.37-8) ... 596s Selecting previously unselected package fontconfig-config. 596s Preparing to unpack .../010-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 596s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 596s Selecting previously unselected package libcc1-0:s390x. 596s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 596s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 596s Selecting previously unselected package libgomp1:s390x. 596s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 596s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 596s Selecting previously unselected package libitm1:s390x. 596s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_s390x.deb ... 596s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 596s Selecting previously unselected package libatomic1:s390x. 596s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 596s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 596s Selecting previously unselected package libasan8:s390x. 596s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_s390x.deb ... 596s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 596s Selecting previously unselected package libubsan1:s390x. 596s Preparing to unpack .../016-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 596s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 596s Selecting previously unselected package libgcc-12-dev:s390x. 596s Preparing to unpack .../017-libgcc-12-dev_12.3.0-15ubuntu1_s390x.deb ... 596s Unpacking libgcc-12-dev:s390x (12.3.0-15ubuntu1) ... 596s Selecting previously unselected package gcc-12. 596s Preparing to unpack .../018-gcc-12_12.3.0-15ubuntu1_s390x.deb ... 596s Unpacking gcc-12 (12.3.0-15ubuntu1) ... 597s Selecting previously unselected package libgfortran5:s390x. 597s Preparing to unpack .../019-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 597s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 597s Selecting previously unselected package libgfortran-12-dev:s390x. 597s Preparing to unpack .../020-libgfortran-12-dev_12.3.0-15ubuntu1_s390x.deb ... 597s Unpacking libgfortran-12-dev:s390x (12.3.0-15ubuntu1) ... 597s Selecting previously unselected package libc-dev-bin. 597s Preparing to unpack .../021-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 597s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 597s Selecting previously unselected package linux-libc-dev:s390x. 597s Preparing to unpack .../022-linux-libc-dev_6.8.0-11.11_s390x.deb ... 597s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 597s Selecting previously unselected package libcrypt-dev:s390x. 597s Preparing to unpack .../023-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 597s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 597s Selecting previously unselected package libtirpc-dev:s390x. 597s Preparing to unpack .../024-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 597s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 597s Selecting previously unselected package libnsl-dev:s390x. 597s Preparing to unpack .../025-libnsl-dev_1.3.0-3_s390x.deb ... 597s Unpacking libnsl-dev:s390x (1.3.0-3) ... 597s Selecting previously unselected package rpcsvc-proto. 597s Preparing to unpack .../026-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 597s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 597s Selecting previously unselected package libc6-dev:s390x. 597s Preparing to unpack .../027-libc6-dev_2.39-0ubuntu2_s390x.deb ... 597s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 597s Selecting previously unselected package gfortran-12. 597s Preparing to unpack .../028-gfortran-12_12.3.0-15ubuntu1_s390x.deb ... 597s Unpacking gfortran-12 (12.3.0-15ubuntu1) ... 597s Selecting previously unselected package libaec0:s390x. 597s Preparing to unpack .../029-libaec0_1.1.2-1_s390x.deb ... 597s Unpacking libaec0:s390x (1.1.2-1) ... 597s Selecting previously unselected package libblas3:s390x. 597s Preparing to unpack .../030-libblas3_3.12.0-3_s390x.deb ... 597s Unpacking libblas3:s390x (3.12.0-3) ... 597s Selecting previously unselected package libfreetype6:s390x. 597s Preparing to unpack .../031-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 597s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 597s Selecting previously unselected package libfontconfig1:s390x. 597s Preparing to unpack .../032-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 597s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 597s Selecting previously unselected package libpixman-1-0:s390x. 597s Preparing to unpack .../033-libpixman-1-0_0.42.2-1_s390x.deb ... 597s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 597s Selecting previously unselected package libxcb-render0:s390x. 597s Preparing to unpack .../034-libxcb-render0_1.15-1_s390x.deb ... 597s Unpacking libxcb-render0:s390x (1.15-1) ... 597s Selecting previously unselected package libxcb-shm0:s390x. 597s Preparing to unpack .../035-libxcb-shm0_1.15-1_s390x.deb ... 597s Unpacking libxcb-shm0:s390x (1.15-1) ... 597s Selecting previously unselected package libxrender1:s390x. 597s Preparing to unpack .../036-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 597s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 597s Selecting previously unselected package libcairo2:s390x. 597s Preparing to unpack .../037-libcairo2_1.18.0-1_s390x.deb ... 597s Unpacking libcairo2:s390x (1.18.0-1) ... 598s Selecting previously unselected package libdeflate0:s390x. 598s Preparing to unpack .../038-libdeflate0_1.19-1_s390x.deb ... 598s Unpacking libdeflate0:s390x (1.19-1) ... 598s Selecting previously unselected package libdouble-conversion3:s390x. 598s Preparing to unpack .../039-libdouble-conversion3_3.3.0-1_s390x.deb ... 598s Unpacking libdouble-conversion3:s390x (3.3.0-1) ... 598s Selecting previously unselected package libdrm-amdgpu1:s390x. 598s Preparing to unpack .../040-libdrm-amdgpu1_2.4.120-2_s390x.deb ... 598s Unpacking libdrm-amdgpu1:s390x (2.4.120-2) ... 598s Selecting previously unselected package libdrm-nouveau2:s390x. 598s Preparing to unpack .../041-libdrm-nouveau2_2.4.120-2_s390x.deb ... 598s Unpacking libdrm-nouveau2:s390x (2.4.120-2) ... 598s Selecting previously unselected package libdrm-radeon1:s390x. 598s Preparing to unpack .../042-libdrm-radeon1_2.4.120-2_s390x.deb ... 598s Unpacking libdrm-radeon1:s390x (2.4.120-2) ... 598s Selecting previously unselected package libevent-2.1-7:s390x. 598s Preparing to unpack .../043-libevent-2.1-7_2.1.12-stable-9_s390x.deb ... 598s Unpacking libevent-2.1-7:s390x (2.1.12-stable-9) ... 598s Selecting previously unselected package libevent-extra-2.1-7:s390x. 598s Preparing to unpack .../044-libevent-extra-2.1-7_2.1.12-stable-9_s390x.deb ... 598s Unpacking libevent-extra-2.1-7:s390x (2.1.12-stable-9) ... 598s Selecting previously unselected package libevent-pthreads-2.1-7:s390x. 598s Preparing to unpack .../045-libevent-pthreads-2.1-7_2.1.12-stable-9_s390x.deb ... 598s Unpacking libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ... 598s Selecting previously unselected package libevent-openssl-2.1-7:s390x. 598s Preparing to unpack .../046-libevent-openssl-2.1-7_2.1.12-stable-9_s390x.deb ... 598s Unpacking libevent-openssl-2.1-7:s390x (2.1.12-stable-9) ... 598s Selecting previously unselected package libevent-dev. 598s Preparing to unpack .../047-libevent-dev_2.1.12-stable-9_s390x.deb ... 598s Unpacking libevent-dev (2.1.12-stable-9) ... 598s Selecting previously unselected package librdmacm1:s390x. 598s Preparing to unpack .../048-librdmacm1_50.0-1_s390x.deb ... 598s Unpacking librdmacm1:s390x (50.0-1) ... 598s Selecting previously unselected package libfabric1:s390x. 598s Preparing to unpack .../049-libfabric1_1.17.0-3_s390x.deb ... 598s Unpacking libfabric1:s390x (1.17.0-3) ... 598s Selecting previously unselected package libfftw3-double3:s390x. 598s Preparing to unpack .../050-libfftw3-double3_3.3.10-1ubuntu1_s390x.deb ... 598s Unpacking libfftw3-double3:s390x (3.3.10-1ubuntu1) ... 598s Selecting previously unselected package libvulkan1:s390x. 598s Preparing to unpack .../051-libvulkan1_1.3.275.0-1_s390x.deb ... 598s Unpacking libvulkan1:s390x (1.3.275.0-1) ... 598s Selecting previously unselected package libglapi-mesa:s390x. 598s Preparing to unpack .../052-libglapi-mesa_24.0.1-1ubuntu1_s390x.deb ... 598s Unpacking libglapi-mesa:s390x (24.0.1-1ubuntu1) ... 598s Selecting previously unselected package libllvm17:s390x. 598s Preparing to unpack .../053-libllvm17_1%3a17.0.6-5build1_s390x.deb ... 598s Unpacking libllvm17:s390x (1:17.0.6-5build1) ... 599s Selecting previously unselected package libxcb-dri3-0:s390x. 599s Preparing to unpack .../054-libxcb-dri3-0_1.15-1_s390x.deb ... 599s Unpacking libxcb-dri3-0:s390x (1.15-1) ... 599s Selecting previously unselected package libgl1-mesa-dri:s390x. 599s Preparing to unpack .../055-libgl1-mesa-dri_24.0.1-1ubuntu1_s390x.deb ... 599s Unpacking libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ... 599s Selecting previously unselected package libglvnd0:s390x. 599s Preparing to unpack .../056-libglvnd0_1.7.0-1_s390x.deb ... 599s Unpacking libglvnd0:s390x (1.7.0-1) ... 599s Selecting previously unselected package libx11-xcb1:s390x. 599s Preparing to unpack .../057-libx11-xcb1_2%3a1.8.7-1_s390x.deb ... 599s Unpacking libx11-xcb1:s390x (2:1.8.7-1) ... 599s Selecting previously unselected package libxcb-dri2-0:s390x. 599s Preparing to unpack .../058-libxcb-dri2-0_1.15-1_s390x.deb ... 599s Unpacking libxcb-dri2-0:s390x (1.15-1) ... 599s Selecting previously unselected package libxcb-glx0:s390x. 599s Preparing to unpack .../059-libxcb-glx0_1.15-1_s390x.deb ... 599s Unpacking libxcb-glx0:s390x (1.15-1) ... 599s Selecting previously unselected package libxcb-present0:s390x. 599s Preparing to unpack .../060-libxcb-present0_1.15-1_s390x.deb ... 599s Unpacking libxcb-present0:s390x (1.15-1) ... 599s Selecting previously unselected package libxcb-randr0:s390x. 599s Preparing to unpack .../061-libxcb-randr0_1.15-1_s390x.deb ... 599s Unpacking libxcb-randr0:s390x (1.15-1) ... 599s Selecting previously unselected package libxcb-sync1:s390x. 599s Preparing to unpack .../062-libxcb-sync1_1.15-1_s390x.deb ... 599s Unpacking libxcb-sync1:s390x (1.15-1) ... 599s Selecting previously unselected package libxcb-xfixes0:s390x. 599s Preparing to unpack .../063-libxcb-xfixes0_1.15-1_s390x.deb ... 599s Unpacking libxcb-xfixes0:s390x (1.15-1) ... 599s Selecting previously unselected package libxfixes3:s390x. 599s Preparing to unpack .../064-libxfixes3_1%3a6.0.0-2_s390x.deb ... 599s Unpacking libxfixes3:s390x (1:6.0.0-2) ... 599s Selecting previously unselected package libxshmfence1:s390x. 599s Preparing to unpack .../065-libxshmfence1_1.3-1build4_s390x.deb ... 599s Unpacking libxshmfence1:s390x (1.3-1build4) ... 599s Selecting previously unselected package libxxf86vm1:s390x. 599s Preparing to unpack .../066-libxxf86vm1_1%3a1.1.4-1build3_s390x.deb ... 599s Unpacking libxxf86vm1:s390x (1:1.1.4-1build3) ... 599s Selecting previously unselected package libglx-mesa0:s390x. 599s Preparing to unpack .../067-libglx-mesa0_24.0.1-1ubuntu1_s390x.deb ... 599s Unpacking libglx-mesa0:s390x (24.0.1-1ubuntu1) ... 599s Selecting previously unselected package libglx0:s390x. 599s Preparing to unpack .../068-libglx0_1.7.0-1_s390x.deb ... 599s Unpacking libglx0:s390x (1.7.0-1) ... 599s Selecting previously unselected package libgl1:s390x. 599s Preparing to unpack .../069-libgl1_1.7.0-1_s390x.deb ... 599s Unpacking libgl1:s390x (1.7.0-1) ... 599s Selecting previously unselected package libgl2ps1.4. 599s Preparing to unpack .../070-libgl2ps1.4_1.4.2+dfsg1-2_s390x.deb ... 599s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 599s Selecting previously unselected package libglew2.2:s390x. 599s Preparing to unpack .../071-libglew2.2_2.2.0-4_s390x.deb ... 599s Unpacking libglew2.2:s390x (2.2.0-4) ... 599s Selecting previously unselected package libsz2:s390x. 599s Preparing to unpack .../072-libsz2_1.1.2-1_s390x.deb ... 599s Unpacking libsz2:s390x (1.1.2-1) ... 599s Selecting previously unselected package libhdf5-103-1:s390x. 599s Preparing to unpack .../073-libhdf5-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 599s Unpacking libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 599s Selecting previously unselected package libhdf5-hl-100:s390x. 599s Preparing to unpack .../074-libhdf5-hl-100_1.10.10+repack-3ubuntu1_s390x.deb ... 599s Unpacking libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 599s Selecting previously unselected package libhwloc15:s390x. 599s Preparing to unpack .../075-libhwloc15_2.10.0-1_s390x.deb ... 599s Unpacking libhwloc15:s390x (2.10.0-1) ... 599s Selecting previously unselected package libjpeg-turbo8:s390x. 599s Preparing to unpack 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libkim-api2:s390x (2.3.0-1) ... 599s Selecting previously unselected package liblapack3:s390x. 599s Preparing to unpack .../082-liblapack3_3.12.0-3_s390x.deb ... 599s Unpacking liblapack3:s390x (3.12.0-3) ... 600s Selecting previously unselected package libnetcdf19:s390x. 600s Preparing to unpack .../083-libnetcdf19_1%3a4.9.2-3ubuntu1_s390x.deb ... 600s Unpacking libnetcdf19:s390x (1:4.9.2-3ubuntu1) ... 600s Selecting previously unselected package libmunge2:s390x. 600s Preparing to unpack .../084-libmunge2_0.5.15-3ubuntu1_s390x.deb ... 600s Unpacking libmunge2:s390x (0.5.15-3ubuntu1) ... 600s Selecting previously unselected package libpciaccess0:s390x. 600s Preparing to unpack .../085-libpciaccess0_0.17-3_s390x.deb ... 600s Unpacking libpciaccess0:s390x (0.17-3) ... 600s Selecting previously unselected package libxnvctrl0:s390x. 600s Preparing to unpack .../086-libxnvctrl0_510.47.03-0ubuntu1_s390x.deb ... 600s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu1) ... 600s Selecting previously unselected package ocl-icd-libopencl1:s390x. 600s Preparing to unpack .../087-ocl-icd-libopencl1_2.3.2-1_s390x.deb ... 600s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1) ... 600s Selecting previously unselected package libhwloc-plugins:s390x. 600s Preparing to unpack .../088-libhwloc-plugins_2.10.0-1_s390x.deb ... 600s Unpacking libhwloc-plugins:s390x (2.10.0-1) ... 600s Selecting previously unselected package libpmix2:s390x. 600s Preparing to unpack .../089-libpmix2_5.0.1-4_s390x.deb ... 600s Unpacking libpmix2:s390x (5.0.1-4) ... 600s Selecting previously unselected package libopenmpi3:s390x. 600s Preparing to unpack .../090-libopenmpi3_4.1.6-5ubuntu1_s390x.deb ... 600s Unpacking libopenmpi3:s390x (4.1.6-5ubuntu1) ... 600s Selecting previously unselected package libpnetcdf0d:s390x. 600s Preparing to unpack .../091-libpnetcdf0d_1.12.3-2_s390x.deb ... 600s Unpacking libpnetcdf0d:s390x (1.12.3-2) ... 600s Selecting previously unselected package libpython3.12:s390x. 600s Preparing to unpack .../092-libpython3.12_3.12.2-1_s390x.deb ... 600s Unpacking libpython3.12:s390x (3.12.2-1) ... 600s Selecting previously unselected package libvoro++1. 600s Preparing to unpack .../093-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 600s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 600s Selecting previously unselected package libogg0:s390x. 600s Preparing to unpack .../094-libogg0_1.3.5-3_s390x.deb ... 600s Unpacking libogg0:s390x (1.3.5-3) ... 600s Selecting previously unselected package libopengl0:s390x. 600s Preparing to unpack .../095-libopengl0_1.7.0-1_s390x.deb ... 600s Unpacking libopengl0:s390x (1.7.0-1) ... 600s Selecting previously unselected package proj-data. 600s Preparing to unpack .../096-proj-data_9.3.1-1_all.deb ... 600s Unpacking proj-data (9.3.1-1) ... 600s Selecting previously unselected package libjbig0:s390x. 600s Preparing to unpack .../097-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 600s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 600s Selecting previously unselected package libsharpyuv0:s390x. 600s Preparing to unpack .../098-libsharpyuv0_1.3.2-0.4_s390x.deb ... 600s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 600s Selecting previously unselected package libwebp7:s390x. 600s Preparing to unpack .../099-libwebp7_1.3.2-0.4_s390x.deb ... 600s Unpacking libwebp7:s390x (1.3.2-0.4) ... 600s Selecting previously unselected package libtiff6:s390x. 600s Preparing to unpack .../100-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 600s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 600s Selecting previously unselected package libproj25:s390x. 600s Preparing to unpack .../101-libproj25_9.3.1-1_s390x.deb ... 600s Unpacking libproj25:s390x (9.3.1-1) ... 600s Selecting previously unselected package libtbbmalloc2:s390x. 600s Preparing to unpack .../102-libtbbmalloc2_2021.11.0-2ubuntu2_s390x.deb ... 600s Unpacking libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 600s Selecting previously unselected package libtbbbind-2-5:s390x. 600s Preparing to unpack .../103-libtbbbind-2-5_2021.11.0-2ubuntu2_s390x.deb ... 600s Unpacking libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 600s Selecting previously unselected package libtbb12:s390x. 600s Preparing to unpack .../104-libtbb12_2021.11.0-2ubuntu2_s390x.deb ... 600s Unpacking libtbb12:s390x (2021.11.0-2ubuntu2) ... 600s Selecting previously unselected package libtcl8.6:s390x. 600s Preparing to unpack .../105-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 600s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 600s Selecting previously unselected package libtheora0:s390x. 600s Preparing to unpack .../106-libtheora0_1.1.1+dfsg.1-16.1_s390x.deb ... 600s Unpacking libtheora0:s390x (1.1.1+dfsg.1-16.1) ... 600s Selecting previously unselected package libxft2:s390x. 600s Preparing to unpack .../107-libxft2_2.3.6-1_s390x.deb ... 600s Unpacking libxft2:s390x (2.3.6-1) ... 600s Selecting previously unselected package x11-common. 600s Preparing to unpack .../108-x11-common_1%3a7.7+23ubuntu2_all.deb ... 600s Unpacking x11-common (1:7.7+23ubuntu2) ... 600s Selecting previously unselected package libxss1:s390x. 600s Preparing to unpack .../109-libxss1_1%3a1.2.3-1build2_s390x.deb ... 600s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 600s Selecting previously unselected package libtk8.6:s390x. 600s Preparing to unpack .../110-libtk8.6_8.6.13-2_s390x.deb ... 600s Unpacking libtk8.6:s390x (8.6.13-2) ... 600s Selecting previously unselected package libvtk9.1:s390x. 600s Preparing to unpack .../111-libvtk9.1_9.1.0+really9.1.0+dfsg2-7build1_s390x.deb ... 600s Unpacking libvtk9.1:s390x (9.1.0+really9.1.0+dfsg2-7build1) ... 601s Selecting previously unselected package liblammps0:s390x. 601s Preparing to unpack .../112-liblammps0_20240207+dfsg-1_s390x.deb ... 601s Unpacking liblammps0:s390x (20240207+dfsg-1) ... 601s Selecting previously unselected package openmpi-common. 601s Preparing to unpack .../113-openmpi-common_4.1.6-5ubuntu1_all.deb ... 601s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 601s Selecting previously unselected package libnl-3-dev:s390x. 601s Preparing to unpack .../114-libnl-3-dev_3.7.0-0.3_s390x.deb ... 601s Unpacking libnl-3-dev:s390x (3.7.0-0.3) ... 601s Selecting previously unselected package libnl-route-3-dev:s390x. 601s Preparing to unpack .../115-libnl-route-3-dev_3.7.0-0.3_s390x.deb ... 601s Unpacking libnl-route-3-dev:s390x (3.7.0-0.3) ... 601s Selecting previously unselected package libibverbs-dev:s390x. 601s Preparing to unpack .../116-libibverbs-dev_50.0-2_s390x.deb ... 601s Unpacking libibverbs-dev:s390x (50.0-2) ... 601s Selecting previously unselected package libnuma-dev:s390x. 601s Preparing to unpack .../117-libnuma-dev_2.0.18-1_s390x.deb ... 601s Unpacking libnuma-dev:s390x (2.0.18-1) ... 601s Selecting previously unselected package libltdl7:s390x. 601s Preparing to unpack .../118-libltdl7_2.4.7-7_s390x.deb ... 601s Unpacking libltdl7:s390x (2.4.7-7) ... 601s Selecting previously unselected package libltdl-dev:s390x. 601s Preparing to unpack .../119-libltdl-dev_2.4.7-7_s390x.deb ... 601s Unpacking libltdl-dev:s390x (2.4.7-7) ... 601s Selecting previously unselected package libhwloc-dev:s390x. 601s Preparing to unpack .../120-libhwloc-dev_2.10.0-1_s390x.deb ... 601s Unpacking libhwloc-dev:s390x (2.10.0-1) ... 602s Selecting previously unselected package zlib1g-dev:s390x. 602s Preparing to unpack .../121-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 602s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 602s Selecting previously unselected package libpmix-dev:s390x. 602s Preparing to unpack .../122-libpmix-dev_5.0.1-4_s390x.deb ... 602s Unpacking libpmix-dev:s390x (5.0.1-4) ... 602s Selecting previously unselected package openmpi-bin. 602s Preparing to unpack .../123-openmpi-bin_4.1.6-5ubuntu1_s390x.deb ... 602s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 602s Selecting previously unselected package libopenmpi-dev:s390x. 602s Preparing to unpack .../124-libopenmpi-dev_4.1.6-5ubuntu1_s390x.deb ... 602s Unpacking libopenmpi-dev:s390x (4.1.6-5ubuntu1) ... 602s Selecting previously unselected package mpi-default-dev. 602s Preparing to unpack .../125-mpi-default-dev_1.15_s390x.deb ... 602s Unpacking mpi-default-dev (1.15) ... 602s Selecting previously unselected package liblammps-dev. 602s Preparing to unpack .../126-liblammps-dev_20240207+dfsg-1_s390x.deb ... 602s Unpacking liblammps-dev (20240207+dfsg-1) ... 602s Selecting previously unselected package mpi-default-bin. 602s Preparing to unpack .../127-mpi-default-bin_1.15_s390x.deb ... 602s Unpacking mpi-default-bin (1.15) ... 602s Selecting previously unselected package python3-lammps. 602s Preparing to unpack .../128-python3-lammps_20240207+dfsg-1_s390x.deb ... 602s Unpacking python3-lammps (20240207+dfsg-1) ... 602s Selecting previously unselected package autopkgtest-satdep. 602s Preparing to unpack .../129-7-autopkgtest-satdep.deb ... 602s Unpacking autopkgtest-satdep (0) ... 602s Setting up libxcb-dri3-0:s390x (1.15-1) ... 602s Setting up libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 602s Setting up libpixman-1-0:s390x (0.42.2-1) ... 602s Setting up librdmacm1:s390x (50.0-1) ... 602s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 602s Setting up libx11-xcb1:s390x (2:1.8.7-1) ... 602s Setting up libpciaccess0:s390x (0.17-3) ... 602s Setting up libdouble-conversion3:s390x (3.3.0-1) ... 602s Setting up libevent-extra-2.1-7:s390x (2.1.12-stable-9) ... 602s Setting up libdrm-nouveau2:s390x (2.4.120-2) ... 602s Setting up libxcb-xfixes0:s390x (1.15-1) ... 602s Setting up libogg0:s390x (1.3.5-3) ... 602s Setting up proj-data (9.3.1-1) ... 602s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 602s Setting up libxcb-render0:s390x (1.15-1) ... 602s Setting up libdrm-radeon1:s390x (2.4.120-2) ... 602s Setting up libglvnd0:s390x (1.7.0-1) ... 602s Setting up libxcb-glx0:s390x (1.15-1) ... 602s Setting up x11-common (1:7.7+23ubuntu2) ... 602s Setting up libdeflate0:s390x (1.19-1) ... 602s Setting up linux-libc-dev:s390x (6.8.0-11.11) ... 602s Setting up libevent-openssl-2.1-7:s390x (2.1.12-stable-9) ... 602s Setting up m4 (1.4.19-4) ... 602s Setting up libxcb-shm0:s390x (1.15-1) ... 602s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 602s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 602s Setting up libaec0:s390x (1.1.2-1) ... 602s Setting up libopengl0:s390x (1.7.0-1) ... 602s Setting up libxxf86vm1:s390x (1:1.1.4-1build3) ... 602s Setting up gcc-12-base:s390x (12.3.0-15ubuntu1) ... 602s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu1) ... 602s Setting up libxcb-present0:s390x (1.15-1) ... 602s Setting up autotools-dev (20220109.1) ... 602s Setting up libblas3:s390x (3.12.0-3) ... 602s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 602s Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ... 602s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 602s Setting up libmunge2:s390x (0.5.15-3ubuntu1) ... 602s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 602s Setting up libxfixes3:s390x (1:6.0.0-2) ... 602s Setting up libxcb-sync1:s390x (1.15-1) ... 602s Setting up fonts-dejavu-mono (2.37-8) ... 602s Setting up libhwloc15:s390x (2.10.0-1) ... 602s Setting up libmpc3:s390x (1.3.1-1) ... 602s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ... 602s Setting up libevent-2.1-7:s390x (2.1.12-stable-9) ... 602s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 602s Setting up libjsoncpp25:s390x (1.9.5-6) ... 602s Setting up fonts-dejavu-core (2.37-8) ... 602s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 602s Setting up libltdl7:s390x (2.4.7-7) ... 602s Setting up libfftw3-double3:s390x (3.3.10-1ubuntu1) ... 602s Setting up libglapi-mesa:s390x (24.0.1-1ubuntu1) ... 602s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 602s Setting up libvulkan1:s390x (1.3.275.0-1) ... 602s Setting up autoconf (2.71-3) ... 602s Setting up libwebp7:s390x (1.3.2-0.4) ... 602s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ... 602s Setting up libxcb-dri2-0:s390x (1.15-1) ... 602s Setting up libnl-3-dev:s390x (3.7.0-0.3) ... 602s Setting up libnsl-dev:s390x (1.3.0-3) ... 602s Setting up ocl-icd-libopencl1:s390x (2.3.2-1) ... 602s Setting up libxshmfence1:s390x (1.3-1build4) ... 602s Setting up libcrypt-dev:s390x (1:4.4.36-4) ... 602s Setting up libxcb-randr0:s390x (1.15-1) ... 602s Setting up libasan8:s390x (14-20240303-1ubuntu1) ... 602s Setting up openmpi-common (4.1.6-5ubuntu1) ... 602s Setting up libxss1:s390x (1:1.2.3-1build2) ... 602s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 602s Setting up libisl23:s390x (0.26-3) ... 602s Setting up libc-dev-bin (2.39-0ubuntu2) ... 602s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 602s Setting up libllvm17:s390x (1:17.0.6-5build1) ... 602s Setting up libpython3.12:s390x (3.12.2-1) ... 602s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ... 602s Setting up libsz2:s390x (1.1.2-1) ... 602s Setting up libitm1:s390x (14-20240303-1ubuntu1) ... 602s Setting up libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ... 602s Setting up libdrm-amdgpu1:s390x (2.4.120-2) ... 602s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 602s Setting up automake (1:1.16.5-1.3ubuntu1) ... 602s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 602s Setting up libfabric1:s390x (1.17.0-3) ... 602s Setting up liblapack3:s390x (3.12.0-3) ... 602s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 602s Setting up cpp-12 (12.3.0-15ubuntu1) ... 602s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 602s Setting up libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ... 602s Setting up libhwloc-plugins:s390x (2.10.0-1) ... 602s Setting up libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 602s Setting up libnl-route-3-dev:s390x (3.7.0-0.3) ... 602s Setting up libltdl-dev:s390x (2.4.7-7) ... 602s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 602s Setting up libgcc-12-dev:s390x (12.3.0-15ubuntu1) ... 602s Setting up libevent-dev (2.1.12-stable-9) ... 602s Setting up libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 602s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 602s Setting up libc6-dev:s390x (2.39-0ubuntu2) ... 602s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 602s Setting up libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 602s Setting up libxft2:s390x (2.3.6-1) ... 602s Setting up libglx-mesa0:s390x (24.0.1-1ubuntu1) ... 602s Setting up libglx0:s390x (1.7.0-1) ... 602s Setting up libproj25:s390x (9.3.1-1) ... 602s Setting up libpmix2:s390x (5.0.1-4) ... 602s Setting up libopenmpi3:s390x (4.1.6-5ubuntu1) ... 602s Setting up libtk8.6:s390x (8.6.13-2) ... 602s Setting up libgfortran-12-dev:s390x (12.3.0-15ubuntu1) ... 602s Setting up libtbb12:s390x (2021.11.0-2ubuntu2) ... 602s Setting up libibverbs-dev:s390x (50.0-2) ... 602s Setting up libcairo2:s390x (1.18.0-1) ... 603s Setting up libnuma-dev:s390x (2.0.18-1) ... 603s Setting up libgl1:s390x (1.7.0-1) ... 603s Setting up gcc-12 (12.3.0-15ubuntu1) ... 603s Setting up libglew2.2:s390x (2.2.0-4) ... 603s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 603s Setting up libnetcdf19:s390x (1:4.9.2-3ubuntu1) ... 603s Setting up libtheora0:s390x (1.1.1+dfsg.1-16.1) ... 603s Setting up libpnetcdf0d:s390x (1.12.3-2) ... 603s Setting up libhwloc-dev:s390x (2.10.0-1) ... 603s Setting up libpmix-dev:s390x (5.0.1-4) ... 603s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 603s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 603s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 603s Setting up mpi-default-bin (1.15) ... 603s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 603s Setting up libvtk9.1:s390x (9.1.0+really9.1.0+dfsg2-7build1) ... 603s Setting up gfortran-12 (12.3.0-15ubuntu1) ... 603s Setting up libopenmpi-dev:s390x (4.1.6-5ubuntu1) ... 603s update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode 603s Setting up libkim-api2:s390x (2.3.0-1) ... 603s Setting up liblammps0:s390x (20240207+dfsg-1) ... 603s Setting up mpi-default-dev (1.15) ... 603s Setting up liblammps-dev (20240207+dfsg-1) ... 603s Setting up python3-lammps (20240207+dfsg-1) ... 603s Setting up autopkgtest-satdep (0) ... 603s Processing triggers for man-db (2.12.0-3) ... 603s Processing triggers for install-info (7.1-3) ... 603s Processing triggers for libc-bin (2.39-0ubuntu2) ... 607s (Reading database ... 58772 files and directories currently installed.) 607s Removing autopkgtest-satdep (0) ... 659s autopkgtest [19:07:56]: test command1: cd python/examples; python3 demo.py 659s autopkgtest [19:07:56]: test command1: [----------------------- 659s LAMMPS (7 Feb 2024 - Update 1) 660s 660s Python output: 660s Natoms, mass, x[0][0] coord = 4000 1.0 0.2727243714666721 660s Temperature from compute = 0.750609109548371 660s Energy from equal-style variable = -5.748192616533703 660s Velocity component from atom-style variable = -0.008231833025308041 660s Volume from get_thermo = 4738.213693437576 660s Natoms from get_natoms = 4000 660s Global coords from gather_atoms = 0.2727243714666721 0.1442606170751015 0.02741951954247279 660s Changed x[0][0] via scatter_atoms = 1.272724371466672 660s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 660s using 1 OpenMP thread(s) per MPI task 660s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 660s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 660s 1 by 1 by 1 MPI processor grid 660s Created 4000 atoms 660s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 660s create_atoms CPU = 0.001 seconds 660s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 660s Neighbor list info ... 660s update: every = 20 steps, delay = 0 steps, check = no 660s max neighbors/atom: 2000, page size: 100000 660s master list distance cutoff = 2.8 660s ghost atom cutoff = 2.8 660s binsize = 1.4, bins = 12 12 12 660s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 660s (1) pair lj/cut, perpetual 660s attributes: half, newton on 660s pair build: half/bin/atomonly/newton 660s stencil: half/bin/3d 660s bin: standard 660s Setting up Verlet run ... 660s Unit style : lj 660s Current step : 0 660s Time step : 0.005 660s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 660s Step Temp E_pair E_mol TotEng Press 660s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 660s 100 0.75060911 -5.7481926 0 -4.6225604 0.24772341 660s Loop time of 0.433997 on 1 procs for 100 steps with 4000 atoms 660s 660s Performance: 99539.786 tau/day, 230.416 timesteps/s, 921.665 katom-step/s 660s 100.6% CPU use with 1 MPI tasks x 1 OpenMP threads 660s 660s MPI task timing breakdown: 660s Section | min time | avg time | max time |%varavg| %total 660s --------------------------------------------------------------- 660s Pair | 0.38838 | 0.38838 | 0.38838 | 0.0 | 89.49 660s Neigh | 0.03595 | 0.03595 | 0.03595 | 0.0 | 8.28 660s Comm | 0.0045037 | 0.0045037 | 0.0045037 | 0.0 | 1.04 660s Output | 3.8825e-05 | 3.8825e-05 | 3.8825e-05 | 0.0 | 0.01 660s Modify | 0.0041285 | 0.0041285 | 0.0041285 | 0.0 | 0.95 660s Other | | 0.0009992 | | | 0.23 660s 660s Nlocal: 4000 ave 4000 max 4000 min 660s Histogram: 1 0 0 0 0 0 0 0 0 0 660s Nghost: 5770 ave 5770 max 5770 min 660s Histogram: 1 0 0 0 0 0 0 0 0 0 660s Neighs: 150293 ave 150293 max 150293 min 660s Histogram: 1 0 0 0 0 0 0 0 0 0 660s 660s Total # of neighbors = 150293 660s Ave neighs/atom = 37.57325 660s Neighbor list builds = 5 660s Dangerous builds not checked 660s Total wall time: 0:00:00 660s autopkgtest [19:07:57]: test command1: -----------------------] 660s autopkgtest [19:07:57]: test command1: - - - - - - - - - - results - - - - - - - - - - 660s command1 PASS 661s autopkgtest [19:07:58]: @@@@@@@@@@@@@@@@@@@@ summary 661s crack PASS 661s dipole PASS 661s ellipse PASS 661s flow PASS 661s friction PASS 661s hugo PASS 661s command1 PASS 672s Creating nova instance adt-noble-s390x-lammps-20240320-185657-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240320.img (UUID 6569a0ff-4984-4a4c-a4d0-b93f21cb5de9)... 672s Creating nova instance adt-noble-s390x-lammps-20240320-185657-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240320.img (UUID 6569a0ff-4984-4a4c-a4d0-b93f21cb5de9)...