0s autopkgtest [23:32:56]: starting date and time: 2024-03-16 23:32:56+0000 0s autopkgtest [23:32:56]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [23:32:56]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.z0pz0q9i/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:netcdf,src:curl,src:gnutls28,src:hdf5,src:libpsl,src:nettle,src:openssl,src:orthanc-python --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=netcdf/1:4.9.2-5ubuntu3 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu3 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-6.secgroup --name adt-noble-s390x-lammps-20240316-233255-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 247s autopkgtest [23:37:03]: testbed dpkg architecture: s390x 248s autopkgtest [23:37:04]: testbed apt version: 2.7.12 248s autopkgtest [23:37:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 248s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 249s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3705 kB] 255s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 255s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 255s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 255s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [631 kB] 256s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 256s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 256s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 256s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3771 kB] 258s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 258s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [33.4 kB] 258s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 259s Fetched 8802 kB in 10s (880 kB/s) 259s Reading package lists... 262s Reading package lists... 262s Building dependency tree... 262s Reading state information... 262s Calculating upgrade... 262s The following packages will be REMOVED: 262s libssl3 262s The following NEW packages will be installed: 262s libssl3t64 262s The following packages have been kept back: 262s curl 262s The following packages will be upgraded: 262s openssl 262s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 262s Need to get 2658 kB of archives. 262s After this operation, 23.6 kB of additional disk space will be used. 262s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 263s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 263s Fetched 2658 kB in 1s (3076 kB/s) 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 263s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 263s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 263s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 263s wget depends on libssl3 (>= 3.0.0). 263s tnftp depends on libssl3 (>= 3.0.0). 263s tcpdump depends on libssl3 (>= 3.0.0). 263s systemd-resolved depends on libssl3 (>= 3.0.0). 263s systemd depends on libssl3 (>= 3.0.0). 263s sudo depends on libssl3 (>= 3.0.0). 263s s390-tools depends on libssl3 (>= 3.0.0). 263s rsync depends on libssl3 (>= 3.0.0). 263s python3-cryptography depends on libssl3 (>= 3.0.0). 263s openssh-server depends on libssl3 (>= 3.0.10). 263s openssh-client depends on libssl3 (>= 3.0.10). 263s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 263s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 263s libssh-4:s390x depends on libssl3 (>= 3.0.0). 263s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 263s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 263s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 263s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 263s libnvme1 depends on libssl3 (>= 3.0.0). 263s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 263s libkmod2:s390x depends on libssl3 (>= 3.0.0). 263s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 263s libcurl4:s390x depends on libssl3 (>= 3.0.0). 263s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 263s kmod depends on libssl3 (>= 3.0.0). 263s dhcpcd-base depends on libssl3 (>= 3.0.0). 263s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 263s 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 263s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 263s Selecting previously unselected package libssl3t64:s390x. 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 263s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 263s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 263s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 263s Setting up openssl (3.0.13-0ubuntu1) ... 263s Processing triggers for man-db (2.12.0-3) ... 264s Processing triggers for libc-bin (2.39-0ubuntu2) ... 264s Reading package lists... 265s Building dependency tree... 265s Reading state information... 265s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 265s Unknown architecture, assuming PC-style ttyS0 265s sh: Attempting to set up Debian/Ubuntu apt sources automatically 265s sh: Distribution appears to be Ubuntu 266s Reading package lists... 266s Building dependency tree... 266s Reading state information... 266s eatmydata is already the newest version (131-1). 266s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 266s Reading package lists... 266s Building dependency tree... 266s Reading state information... 266s dbus is already the newest version (1.14.10-4ubuntu1). 266s dbus set to manually installed. 266s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 267s Reading package lists... 267s Building dependency tree... 267s Reading state information... 267s rng-tools-debian is already the newest version (2.4). 267s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 267s Reading package lists... 267s Building dependency tree... 267s Reading state information... 267s The following packages will be REMOVED: 267s cloud-init* python3-configobj* python3-debconf* 267s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 267s After this operation, 3252 kB disk space will be freed. 267s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 267s Removing cloud-init (24.1.1-0ubuntu1) ... 268s Removing python3-configobj (5.0.8-3) ... 268s Removing python3-debconf (1.5.86) ... 268s Processing triggers for man-db (2.12.0-3) ... 268s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51784 files and directories currently installed.) 268s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 269s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 269s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 269s invoke-rc.d: policy-rc.d denied execution of try-restart. 269s Reading package lists... 269s Building dependency tree... 269s Reading state information... 269s linux-generic is already the newest version (6.8.0-11.11+1). 269s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 270s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 270s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 270s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 272s Reading package lists... 272s Reading package lists... 272s Building dependency tree... 272s Reading state information... 272s Calculating upgrade... 272s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 272s Reading package lists... 272s Building dependency tree... 272s Reading state information... 272s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 273s autopkgtest [23:37:29]: rebooting testbed after setup commands that affected boot 287s autopkgtest [23:37:43]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 289s autopkgtest [23:37:45]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 299s Get:1 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1 (dsc) [3139 B] 299s Get:2 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1 (tar) [153 MB] 299s Get:3 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1 (diff) [16.8 kB] 299s gpgv: Signature made Sun Feb 18 15:30:49 2024 UTC 299s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 299s gpgv: issuer "dparsons@debian.org" 299s gpgv: Can't check signature: No public key 299s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-1.dsc: no acceptable signature found 315s autopkgtest [23:38:11]: testing package lammps version 20240207+dfsg-1 316s autopkgtest [23:38:12]: build not needed 344s autopkgtest [23:38:40]: test crack: preparing testbed 345s Reading package lists... 346s Building dependency tree... 346s Reading state information... 346s Starting pkgProblemResolver with broken count: 0 346s Starting 2 pkgProblemResolver with broken count: 0 346s Done 346s The following additional packages will be installed: 346s cpp-12 fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-12 346s gcc-12-base gfortran-12 lammps lammps-data libaec0 libasan8 libatomic1 346s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdeflate0 346s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 346s libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfontconfig1 346s libfreetype6 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 346s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 346s libglx0 libgomp1 libhdf5-103-1 libhdf5-hl-100 libhwloc-plugins libhwloc15 346s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkim-api2 346s liblammps0 liblapack3 libllvm17 libmpc3 libmunge2 libnetcdf19 libnsl-dev 346s libogg0 libopengl0 libopenmpi3 libpciaccess0 libpixman-1-0 libpmix2 346s libpnetcdf0d libproj25 libpython3.12 librdmacm1 libsharpyuv0 libsz2 libtbb12 346s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtirpc-dev 346s libtk8.6 libubsan1 libvoro++1 libvtk9.1 libvulkan1 libwebp7 libx11-xcb1 346s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 346s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 346s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev 346s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 346s rpcsvc-proto x11-common 346s Suggested packages: 346s gcc-12-locales cpp-12-doc gcc-12-multilib gcc-12-doc gfortran-12-multilib 346s gfortran-12-doc libcoarrays-dev openkim-models glibc-doc manpages-dev 346s libfftw3-bin libfftw3-dev glew-utils proj-bin tcl8.6 tk8.6 vtk9-doc 346s vtk9-examples opencl-icd gfortran | fortran-compiler 346s Recommended packages: 346s lammps-doc manpages manpages-dev libc-devtools libgl1-amber-dri 346s mesa-vulkan-drivers | vulkan-icd 346s The following NEW packages will be installed: 346s autopkgtest-satdep cpp-12 fontconfig-config fonts-dejavu-core 346s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 lammps lammps-data libaec0 346s libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 346s libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 346s libdrm-nouveau2 libdrm-radeon1 libevent-pthreads-2.1-7 libfabric1 346s libfftw3-double3 libfontconfig1 libfreetype6 libgcc-12-dev 346s libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 346s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 346s libhdf5-103-1 libhdf5-hl-100 libhwloc-plugins libhwloc15 libisl23 libitm1 346s libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkim-api2 liblammps0 346s liblapack3 libllvm17 libmpc3 libmunge2 libnetcdf19 libnsl-dev libogg0 346s libopengl0 libopenmpi3 libpciaccess0 libpixman-1-0 libpmix2 libpnetcdf0d 346s libproj25 libpython3.12 librdmacm1 libsharpyuv0 libsz2 libtbb12 346s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtirpc-dev 346s libtk8.6 libubsan1 libvoro++1 libvtk9.1 libvulkan1 libwebp7 libx11-xcb1 346s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 346s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 346s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev 346s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 346s rpcsvc-proto x11-common 346s 0 upgraded, 109 newly installed, 0 to remove and 0 not upgraded. 346s Need to get 153 MB/153 MB of archives. 346s After this operation, 636 MB of additional disk space will be used. 346s Get:1 /tmp/autopkgtest.E26P9T/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 346s Get:2 http://ftpmaster.internal/ubuntu noble/universe s390x gcc-12-base s390x 12.3.0-15ubuntu1 [45.5 kB] 346s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 347s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 347s Get:5 http://ftpmaster.internal/ubuntu noble/universe s390x cpp-12 s390x 12.3.0-15ubuntu1 [8176 kB] 347s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 347s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 347s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 347s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 347s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 347s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 347s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 347s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 347s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 347s Get:15 http://ftpmaster.internal/ubuntu noble/universe s390x libgcc-12-dev s390x 12.3.0-15ubuntu1 [857 kB] 347s Get:16 http://ftpmaster.internal/ubuntu noble/universe s390x gcc-12 s390x 12.3.0-15ubuntu1 [16.2 MB] 348s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 348s Get:18 http://ftpmaster.internal/ubuntu noble/universe s390x libgfortran-12-dev s390x 12.3.0-15ubuntu1 [517 kB] 348s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 348s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 348s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 348s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 348s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 348s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 348s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 348s Get:26 http://ftpmaster.internal/ubuntu noble/universe s390x gfortran-12 s390x 12.3.0-15ubuntu1 [8590 kB] 348s Get:27 http://ftpmaster.internal/ubuntu noble/universe s390x lammps-data all 20240207+dfsg-1 [9700 kB] 348s Get:28 http://ftpmaster.internal/ubuntu noble/universe s390x libaec0 s390x 1.1.2-1 [25.7 kB] 348s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 348s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 348s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 348s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 349s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 349s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 349s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 349s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 349s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 349s Get:38 http://ftpmaster.internal/ubuntu noble/universe s390x libdouble-conversion3 s390x 3.3.0-1 [39.6 kB] 349s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-amdgpu1 s390x 2.4.120-2 [21.1 kB] 349s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-nouveau2 s390x 2.4.120-2 [18.5 kB] 349s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-radeon1 s390x 2.4.120-2 [22.7 kB] 349s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libevent-pthreads-2.1-7 s390x 2.1.12-stable-9 [7692 B] 349s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x librdmacm1 s390x 50.0-1 [73.9 kB] 349s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x libfabric1 s390x 1.17.0-3 [513 kB] 349s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-double3 s390x 3.3.10-1ubuntu1 [465 kB] 349s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libvulkan1 s390x 1.3.275.0-1 [155 kB] 349s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libglapi-mesa s390x 24.0.1-1ubuntu1 [68.7 kB] 349s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libllvm17 s390x 1:17.0.6-5build1 [31.2 MB] 349s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri3-0 s390x 1.15-1 [7270 B] 349s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libgl1-mesa-dri s390x 24.0.1-1ubuntu1 [7184 kB] 350s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libglvnd0 s390x 1.7.0-1 [106 kB] 350s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libx11-xcb1 s390x 2:1.8.7-1 [7778 B] 350s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri2-0 s390x 1.15-1 [7426 B] 350s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-glx0 s390x 1.15-1 [25.8 kB] 350s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-present0 s390x 1.15-1 [5752 B] 350s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-randr0 s390x 1.15-1 [19.0 kB] 350s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-sync1 s390x 1.15-1 [9392 B] 350s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xfixes0 s390x 1.15-1 [10.5 kB] 350s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libxfixes3 s390x 1:6.0.0-2 [10.6 kB] 350s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libxshmfence1 s390x 1.3-1build4 [5334 B] 350s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libxxf86vm1 s390x 1:1.1.4-1build3 [9900 B] 350s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libglx-mesa0 s390x 24.0.1-1ubuntu1 [182 kB] 350s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libglx0 s390x 1.7.0-1 [31.4 kB] 350s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libgl1 s390x 1.7.0-1 [137 kB] 350s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2 [40.2 kB] 350s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x libglew2.2 s390x 2.2.0-4 [202 kB] 350s Get:67 http://ftpmaster.internal/ubuntu noble/universe s390x libsz2 s390x 1.1.2-1 [5346 B] 350s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-103-1 s390x 1.10.10+repack-3ubuntu1 [1425 kB] 350s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-100 s390x 1.10.10+repack-3ubuntu1 [57.5 kB] 350s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc15 s390x 2.10.0-1 [174 kB] 350s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 350s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 350s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libjsoncpp25 s390x 1.9.5-6 [75.5 kB] 350s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x libkim-api2 s390x 2.3.0-1 [544 kB] 350s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 350s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x libnetcdf19 s390x 1:4.9.2-3ubuntu1 [506 kB] 350s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x libmunge2 s390x 0.5.15-3ubuntu1 [17.3 kB] 350s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libpciaccess0 s390x 0.17-3 [18.5 kB] 350s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu1 [11.7 kB] 350s Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1 [39.1 kB] 350s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-plugins s390x 2.10.0-1 [16.1 kB] 350s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix2 s390x 5.0.1-4 [722 kB] 350s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi3 s390x 4.1.6-5ubuntu1 [3024 kB] 350s Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libpnetcdf0d s390x 1.12.3-2 [820 kB] 350s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12 s390x 3.12.2-1 [2561 kB] 350s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 350s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libogg0 s390x 1.3.5-3 [22.7 kB] 350s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libopengl0 s390x 1.7.0-1 [45.9 kB] 350s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x proj-data all 9.3.1-1 [7867 kB] 350s Get:90 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 350s Get:91 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 350s Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 350s Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 350s Get:94 http://ftpmaster.internal/ubuntu noble/universe s390x libproj25 s390x 9.3.1-1 [1368 kB] 350s Get:95 http://ftpmaster.internal/ubuntu noble/universe s390x libtbbmalloc2 s390x 2021.11.0-2ubuntu2 [68.0 kB] 350s Get:96 http://ftpmaster.internal/ubuntu noble/universe s390x libtbbbind-2-5 s390x 2021.11.0-2ubuntu2 [16.7 kB] 350s Get:97 http://ftpmaster.internal/ubuntu noble/universe s390x libtbb12 s390x 2021.11.0-2ubuntu2 [118 kB] 350s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 350s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libtheora0 s390x 1.1.1+dfsg.1-16.1 [262 kB] 350s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 350s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 350s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 350s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 351s Get:104 http://ftpmaster.internal/ubuntu noble/universe s390x libvtk9.1 s390x 9.1.0+really9.1.0+dfsg2-7build1 [22.1 MB] 352s Get:105 http://ftpmaster.internal/ubuntu noble/universe s390x liblammps0 s390x 20240207+dfsg-1 [7953 kB] 352s Get:106 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-common all 4.1.6-5ubuntu1 [178 kB] 352s Get:107 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-bin s390x 4.1.6-5ubuntu1 [92.5 kB] 352s Get:108 http://ftpmaster.internal/ubuntu noble/universe s390x mpi-default-bin s390x 1.15 [2338 B] 352s Get:109 http://ftpmaster.internal/ubuntu noble/universe s390x lammps s390x 20240207+dfsg-1 [15.2 kB] 353s Fetched 153 MB in 6s (24.8 MB/s) 353s Selecting previously unselected package gcc-12-base:s390x. 353s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51729 files and directories currently installed.) 353s Preparing to unpack .../000-gcc-12-base_12.3.0-15ubuntu1_s390x.deb ... 353s Unpacking gcc-12-base:s390x (12.3.0-15ubuntu1) ... 353s Selecting previously unselected package libisl23:s390x. 353s Preparing to unpack .../001-libisl23_0.26-3_s390x.deb ... 353s Unpacking libisl23:s390x (0.26-3) ... 353s Selecting previously unselected package libmpc3:s390x. 353s Preparing to unpack .../002-libmpc3_1.3.1-1_s390x.deb ... 353s Unpacking libmpc3:s390x (1.3.1-1) ... 353s Selecting previously unselected package cpp-12. 353s Preparing to unpack .../003-cpp-12_12.3.0-15ubuntu1_s390x.deb ... 353s Unpacking cpp-12 (12.3.0-15ubuntu1) ... 353s Selecting previously unselected package fonts-dejavu-mono. 353s Preparing to unpack .../004-fonts-dejavu-mono_2.37-8_all.deb ... 353s Unpacking fonts-dejavu-mono (2.37-8) ... 353s Selecting previously unselected package fonts-dejavu-core. 353s Preparing to unpack .../005-fonts-dejavu-core_2.37-8_all.deb ... 353s Unpacking fonts-dejavu-core (2.37-8) ... 353s Selecting previously unselected package fontconfig-config. 353s Preparing to unpack .../006-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 353s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 353s Selecting previously unselected package libcc1-0:s390x. 353s Preparing to unpack .../007-libcc1-0_14-20240303-1ubuntu1_s390x.deb ... 353s Unpacking libcc1-0:s390x (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libgomp1:s390x. 353s Preparing to unpack .../008-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 353s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libitm1:s390x. 353s Preparing to unpack .../009-libitm1_14-20240303-1ubuntu1_s390x.deb ... 353s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libatomic1:s390x. 353s Preparing to unpack .../010-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 353s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libasan8:s390x. 353s Preparing to unpack .../011-libasan8_14-20240303-1ubuntu1_s390x.deb ... 353s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libubsan1:s390x. 353s Preparing to unpack .../012-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 353s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libgcc-12-dev:s390x. 353s Preparing to unpack .../013-libgcc-12-dev_12.3.0-15ubuntu1_s390x.deb ... 353s Unpacking libgcc-12-dev:s390x (12.3.0-15ubuntu1) ... 354s Selecting previously unselected package gcc-12. 354s Preparing to unpack .../014-gcc-12_12.3.0-15ubuntu1_s390x.deb ... 354s Unpacking gcc-12 (12.3.0-15ubuntu1) ... 354s Selecting previously unselected package libgfortran5:s390x. 354s Preparing to unpack .../015-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 354s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libgfortran-12-dev:s390x. 354s Preparing to unpack .../016-libgfortran-12-dev_12.3.0-15ubuntu1_s390x.deb ... 354s Unpacking libgfortran-12-dev:s390x (12.3.0-15ubuntu1) ... 354s Selecting previously unselected package libc-dev-bin. 354s Preparing to unpack .../017-libc-dev-bin_2.39-0ubuntu2_s390x.deb ... 354s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 354s Selecting previously unselected package linux-libc-dev:s390x. 354s Preparing to unpack .../018-linux-libc-dev_6.8.0-11.11_s390x.deb ... 354s Unpacking linux-libc-dev:s390x (6.8.0-11.11) ... 354s Selecting previously unselected package libcrypt-dev:s390x. 354s Preparing to unpack .../019-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... 354s Unpacking libcrypt-dev:s390x (1:4.4.36-4) ... 354s Selecting previously unselected package libtirpc-dev:s390x. 354s Preparing to unpack .../020-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 354s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 354s Selecting previously unselected package libnsl-dev:s390x. 354s Preparing to unpack .../021-libnsl-dev_1.3.0-3_s390x.deb ... 354s Unpacking libnsl-dev:s390x (1.3.0-3) ... 354s Selecting previously unselected package rpcsvc-proto. 354s Preparing to unpack .../022-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 354s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 354s Selecting previously unselected package libc6-dev:s390x. 354s Preparing to unpack .../023-libc6-dev_2.39-0ubuntu2_s390x.deb ... 354s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 354s Selecting previously unselected package gfortran-12. 354s Preparing to unpack .../024-gfortran-12_12.3.0-15ubuntu1_s390x.deb ... 354s Unpacking gfortran-12 (12.3.0-15ubuntu1) ... 355s Selecting previously unselected package lammps-data. 355s Preparing to unpack .../025-lammps-data_20240207+dfsg-1_all.deb ... 355s Unpacking lammps-data (20240207+dfsg-1) ... 355s Selecting previously unselected package libaec0:s390x. 355s Preparing to unpack .../026-libaec0_1.1.2-1_s390x.deb ... 355s Unpacking libaec0:s390x (1.1.2-1) ... 355s Selecting previously unselected package libblas3:s390x. 355s Preparing to unpack .../027-libblas3_3.12.0-3_s390x.deb ... 355s Unpacking libblas3:s390x (3.12.0-3) ... 355s Selecting previously unselected package libfreetype6:s390x. 355s Preparing to unpack .../028-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 355s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 355s Selecting previously unselected package libfontconfig1:s390x. 355s Preparing to unpack .../029-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 355s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 355s Selecting previously unselected package libpixman-1-0:s390x. 355s Preparing to unpack .../030-libpixman-1-0_0.42.2-1_s390x.deb ... 355s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 355s Selecting previously unselected package libxcb-render0:s390x. 355s Preparing to unpack .../031-libxcb-render0_1.15-1_s390x.deb ... 355s Unpacking libxcb-render0:s390x (1.15-1) ... 355s Selecting previously unselected package libxcb-shm0:s390x. 355s Preparing to unpack .../032-libxcb-shm0_1.15-1_s390x.deb ... 355s Unpacking libxcb-shm0:s390x (1.15-1) ... 355s Selecting previously unselected package libxrender1:s390x. 355s Preparing to unpack .../033-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 355s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 355s Selecting previously unselected package libcairo2:s390x. 355s Preparing to unpack .../034-libcairo2_1.18.0-1_s390x.deb ... 355s Unpacking libcairo2:s390x (1.18.0-1) ... 355s Selecting previously unselected package libdeflate0:s390x. 355s Preparing to unpack .../035-libdeflate0_1.19-1_s390x.deb ... 355s Unpacking libdeflate0:s390x (1.19-1) ... 355s Selecting previously unselected package libdouble-conversion3:s390x. 355s Preparing to unpack .../036-libdouble-conversion3_3.3.0-1_s390x.deb ... 355s Unpacking libdouble-conversion3:s390x (3.3.0-1) ... 355s Selecting previously unselected package libdrm-amdgpu1:s390x. 355s Preparing to unpack .../037-libdrm-amdgpu1_2.4.120-2_s390x.deb ... 355s Unpacking libdrm-amdgpu1:s390x (2.4.120-2) ... 355s Selecting previously unselected package libdrm-nouveau2:s390x. 355s Preparing to unpack .../038-libdrm-nouveau2_2.4.120-2_s390x.deb ... 355s Unpacking libdrm-nouveau2:s390x (2.4.120-2) ... 355s Selecting previously unselected package libdrm-radeon1:s390x. 355s Preparing to unpack .../039-libdrm-radeon1_2.4.120-2_s390x.deb ... 355s Unpacking libdrm-radeon1:s390x (2.4.120-2) ... 355s Selecting previously unselected package libevent-pthreads-2.1-7:s390x. 355s Preparing to unpack .../040-libevent-pthreads-2.1-7_2.1.12-stable-9_s390x.deb ... 355s Unpacking libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ... 355s Selecting previously unselected package librdmacm1:s390x. 355s Preparing to unpack .../041-librdmacm1_50.0-1_s390x.deb ... 355s Unpacking librdmacm1:s390x (50.0-1) ... 355s Selecting previously unselected package libfabric1:s390x. 355s Preparing to unpack .../042-libfabric1_1.17.0-3_s390x.deb ... 355s Unpacking libfabric1:s390x (1.17.0-3) ... 355s Selecting previously unselected package libfftw3-double3:s390x. 355s Preparing to unpack .../043-libfftw3-double3_3.3.10-1ubuntu1_s390x.deb ... 355s Unpacking libfftw3-double3:s390x (3.3.10-1ubuntu1) ... 355s Selecting previously unselected package libvulkan1:s390x. 355s Preparing to unpack .../044-libvulkan1_1.3.275.0-1_s390x.deb ... 355s Unpacking libvulkan1:s390x (1.3.275.0-1) ... 355s Selecting previously unselected package libglapi-mesa:s390x. 355s Preparing to unpack .../045-libglapi-mesa_24.0.1-1ubuntu1_s390x.deb ... 355s Unpacking libglapi-mesa:s390x (24.0.1-1ubuntu1) ... 355s Selecting previously unselected package libllvm17:s390x. 355s Preparing to unpack .../046-libllvm17_1%3a17.0.6-5build1_s390x.deb ... 355s Unpacking libllvm17:s390x (1:17.0.6-5build1) ... 356s Selecting previously unselected package libxcb-dri3-0:s390x. 356s Preparing to unpack .../047-libxcb-dri3-0_1.15-1_s390x.deb ... 356s Unpacking libxcb-dri3-0:s390x (1.15-1) ... 356s Selecting previously unselected package libgl1-mesa-dri:s390x. 356s Preparing to unpack .../048-libgl1-mesa-dri_24.0.1-1ubuntu1_s390x.deb ... 356s Unpacking libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ... 356s Selecting previously unselected package libglvnd0:s390x. 356s Preparing to unpack .../049-libglvnd0_1.7.0-1_s390x.deb ... 356s Unpacking libglvnd0:s390x (1.7.0-1) ... 356s Selecting previously unselected package libx11-xcb1:s390x. 356s Preparing to unpack .../050-libx11-xcb1_2%3a1.8.7-1_s390x.deb ... 356s Unpacking libx11-xcb1:s390x (2:1.8.7-1) ... 356s Selecting previously unselected package libxcb-dri2-0:s390x. 356s Preparing to unpack .../051-libxcb-dri2-0_1.15-1_s390x.deb ... 356s Unpacking libxcb-dri2-0:s390x (1.15-1) ... 357s Selecting previously unselected package libxcb-glx0:s390x. 357s Preparing to unpack .../052-libxcb-glx0_1.15-1_s390x.deb ... 357s Unpacking libxcb-glx0:s390x (1.15-1) ... 357s Selecting previously unselected package libxcb-present0:s390x. 357s Preparing to unpack .../053-libxcb-present0_1.15-1_s390x.deb ... 357s Unpacking libxcb-present0:s390x (1.15-1) ... 357s Selecting previously unselected package libxcb-randr0:s390x. 357s Preparing to unpack .../054-libxcb-randr0_1.15-1_s390x.deb ... 357s Unpacking libxcb-randr0:s390x (1.15-1) ... 357s Selecting previously unselected package libxcb-sync1:s390x. 357s Preparing to unpack .../055-libxcb-sync1_1.15-1_s390x.deb ... 357s Unpacking libxcb-sync1:s390x (1.15-1) ... 357s Selecting previously unselected package libxcb-xfixes0:s390x. 357s Preparing to unpack .../056-libxcb-xfixes0_1.15-1_s390x.deb ... 357s Unpacking libxcb-xfixes0:s390x (1.15-1) ... 357s Selecting previously unselected package libxfixes3:s390x. 357s Preparing to unpack .../057-libxfixes3_1%3a6.0.0-2_s390x.deb ... 357s Unpacking libxfixes3:s390x (1:6.0.0-2) ... 357s Selecting previously unselected package libxshmfence1:s390x. 357s Preparing to unpack .../058-libxshmfence1_1.3-1build4_s390x.deb ... 357s Unpacking libxshmfence1:s390x (1.3-1build4) ... 357s Selecting previously unselected package libxxf86vm1:s390x. 357s Preparing to unpack .../059-libxxf86vm1_1%3a1.1.4-1build3_s390x.deb ... 357s Unpacking libxxf86vm1:s390x (1:1.1.4-1build3) ... 357s Selecting previously unselected package libglx-mesa0:s390x. 357s Preparing to unpack .../060-libglx-mesa0_24.0.1-1ubuntu1_s390x.deb ... 357s Unpacking libglx-mesa0:s390x (24.0.1-1ubuntu1) ... 357s Selecting previously unselected package libglx0:s390x. 357s Preparing to unpack .../061-libglx0_1.7.0-1_s390x.deb ... 357s Unpacking libglx0:s390x (1.7.0-1) ... 357s Selecting previously unselected package libgl1:s390x. 357s Preparing to unpack .../062-libgl1_1.7.0-1_s390x.deb ... 357s Unpacking libgl1:s390x (1.7.0-1) ... 357s Selecting previously unselected package libgl2ps1.4. 357s Preparing to unpack .../063-libgl2ps1.4_1.4.2+dfsg1-2_s390x.deb ... 357s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 357s Selecting previously unselected package libglew2.2:s390x. 357s Preparing to unpack .../064-libglew2.2_2.2.0-4_s390x.deb ... 357s Unpacking libglew2.2:s390x (2.2.0-4) ... 357s Selecting previously unselected package libsz2:s390x. 357s Preparing to unpack .../065-libsz2_1.1.2-1_s390x.deb ... 357s Unpacking libsz2:s390x (1.1.2-1) ... 357s Selecting previously unselected package libhdf5-103-1:s390x. 357s Preparing to unpack .../066-libhdf5-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 357s Unpacking libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 357s Selecting previously unselected package libhdf5-hl-100:s390x. 357s Preparing to unpack .../067-libhdf5-hl-100_1.10.10+repack-3ubuntu1_s390x.deb ... 357s Unpacking libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 357s Selecting previously unselected package libhwloc15:s390x. 357s Preparing to unpack .../068-libhwloc15_2.10.0-1_s390x.deb ... 357s Unpacking libhwloc15:s390x (2.10.0-1) ... 357s Selecting previously unselected package libjpeg-turbo8:s390x. 357s Preparing to unpack .../069-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 357s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 357s Selecting previously unselected package libjpeg8:s390x. 357s Preparing to unpack .../070-libjpeg8_8c-2ubuntu11_s390x.deb ... 357s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 357s Selecting previously unselected package libjsoncpp25:s390x. 357s Preparing to unpack .../071-libjsoncpp25_1.9.5-6_s390x.deb ... 357s Unpacking libjsoncpp25:s390x (1.9.5-6) ... 357s Selecting previously unselected package libkim-api2:s390x. 357s Preparing to unpack .../072-libkim-api2_2.3.0-1_s390x.deb ... 357s Unpacking libkim-api2:s390x (2.3.0-1) ... 357s Selecting previously unselected package liblapack3:s390x. 357s Preparing to unpack .../073-liblapack3_3.12.0-3_s390x.deb ... 357s Unpacking liblapack3:s390x (3.12.0-3) ... 357s Selecting previously unselected package libnetcdf19:s390x. 357s Preparing to unpack .../074-libnetcdf19_1%3a4.9.2-3ubuntu1_s390x.deb ... 357s Unpacking libnetcdf19:s390x (1:4.9.2-3ubuntu1) ... 357s Selecting previously unselected package libmunge2:s390x. 357s Preparing to unpack .../075-libmunge2_0.5.15-3ubuntu1_s390x.deb ... 357s Unpacking libmunge2:s390x (0.5.15-3ubuntu1) ... 357s Selecting previously unselected package libpciaccess0:s390x. 357s Preparing to unpack .../076-libpciaccess0_0.17-3_s390x.deb ... 357s Unpacking libpciaccess0:s390x (0.17-3) ... 357s Selecting previously unselected package libxnvctrl0:s390x. 357s Preparing to unpack .../077-libxnvctrl0_510.47.03-0ubuntu1_s390x.deb ... 357s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu1) ... 357s Selecting previously unselected package ocl-icd-libopencl1:s390x. 357s Preparing to unpack .../078-ocl-icd-libopencl1_2.3.2-1_s390x.deb ... 357s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1) ... 357s Selecting previously unselected package libhwloc-plugins:s390x. 357s Preparing to unpack .../079-libhwloc-plugins_2.10.0-1_s390x.deb ... 357s Unpacking libhwloc-plugins:s390x (2.10.0-1) ... 357s Selecting previously unselected package libpmix2:s390x. 357s Preparing to unpack .../080-libpmix2_5.0.1-4_s390x.deb ... 357s Unpacking libpmix2:s390x (5.0.1-4) ... 357s Selecting previously unselected package libopenmpi3:s390x. 357s Preparing to unpack .../081-libopenmpi3_4.1.6-5ubuntu1_s390x.deb ... 357s Unpacking libopenmpi3:s390x (4.1.6-5ubuntu1) ... 357s Selecting previously unselected package libpnetcdf0d:s390x. 357s Preparing to unpack .../082-libpnetcdf0d_1.12.3-2_s390x.deb ... 357s Unpacking libpnetcdf0d:s390x (1.12.3-2) ... 357s Selecting previously unselected package libpython3.12:s390x. 357s Preparing to unpack .../083-libpython3.12_3.12.2-1_s390x.deb ... 357s Unpacking libpython3.12:s390x (3.12.2-1) ... 357s Selecting previously unselected package libvoro++1. 357s Preparing to unpack .../084-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 357s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 357s Selecting previously unselected package libogg0:s390x. 357s Preparing to unpack .../085-libogg0_1.3.5-3_s390x.deb ... 357s Unpacking libogg0:s390x (1.3.5-3) ... 357s Selecting previously unselected package libopengl0:s390x. 357s Preparing to unpack .../086-libopengl0_1.7.0-1_s390x.deb ... 357s Unpacking libopengl0:s390x (1.7.0-1) ... 357s Selecting previously unselected package proj-data. 357s Preparing to unpack .../087-proj-data_9.3.1-1_all.deb ... 357s Unpacking proj-data (9.3.1-1) ... 358s Selecting previously unselected package libjbig0:s390x. 358s Preparing to unpack .../088-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 358s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 358s Selecting previously unselected package libsharpyuv0:s390x. 358s Preparing to unpack .../089-libsharpyuv0_1.3.2-0.4_s390x.deb ... 358s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 358s Selecting previously unselected package libwebp7:s390x. 358s Preparing to unpack .../090-libwebp7_1.3.2-0.4_s390x.deb ... 358s Unpacking libwebp7:s390x (1.3.2-0.4) ... 358s Selecting previously unselected package libtiff6:s390x. 358s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 358s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 358s Selecting previously unselected package libproj25:s390x. 358s Preparing to unpack .../092-libproj25_9.3.1-1_s390x.deb ... 358s Unpacking libproj25:s390x (9.3.1-1) ... 358s Selecting previously unselected package libtbbmalloc2:s390x. 358s Preparing to unpack .../093-libtbbmalloc2_2021.11.0-2ubuntu2_s390x.deb ... 358s Unpacking libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 358s Selecting previously unselected package libtbbbind-2-5:s390x. 358s Preparing to unpack .../094-libtbbbind-2-5_2021.11.0-2ubuntu2_s390x.deb ... 358s Unpacking libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 358s Selecting previously unselected package libtbb12:s390x. 358s Preparing to unpack .../095-libtbb12_2021.11.0-2ubuntu2_s390x.deb ... 358s Unpacking libtbb12:s390x (2021.11.0-2ubuntu2) ... 358s Selecting previously unselected package libtcl8.6:s390x. 358s Preparing to unpack .../096-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 358s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 358s Selecting previously unselected package libtheora0:s390x. 358s Preparing to unpack .../097-libtheora0_1.1.1+dfsg.1-16.1_s390x.deb ... 358s Unpacking libtheora0:s390x (1.1.1+dfsg.1-16.1) ... 358s Selecting previously unselected package libxft2:s390x. 358s Preparing to unpack .../098-libxft2_2.3.6-1_s390x.deb ... 358s Unpacking libxft2:s390x (2.3.6-1) ... 358s Selecting previously unselected package x11-common. 358s Preparing to unpack .../099-x11-common_1%3a7.7+23ubuntu2_all.deb ... 358s Unpacking x11-common (1:7.7+23ubuntu2) ... 358s Selecting previously unselected package libxss1:s390x. 358s Preparing to unpack .../100-libxss1_1%3a1.2.3-1build2_s390x.deb ... 358s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 358s Selecting previously unselected package libtk8.6:s390x. 358s Preparing to unpack .../101-libtk8.6_8.6.13-2_s390x.deb ... 358s Unpacking libtk8.6:s390x (8.6.13-2) ... 358s Selecting previously unselected package libvtk9.1:s390x. 358s Preparing to unpack .../102-libvtk9.1_9.1.0+really9.1.0+dfsg2-7build1_s390x.deb ... 358s Unpacking libvtk9.1:s390x (9.1.0+really9.1.0+dfsg2-7build1) ... 359s Selecting previously unselected package liblammps0:s390x. 359s Preparing to unpack .../103-liblammps0_20240207+dfsg-1_s390x.deb ... 359s Unpacking liblammps0:s390x (20240207+dfsg-1) ... 359s Selecting previously unselected package openmpi-common. 359s Preparing to unpack .../104-openmpi-common_4.1.6-5ubuntu1_all.deb ... 359s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 359s Selecting previously unselected package openmpi-bin. 359s Preparing to unpack .../105-openmpi-bin_4.1.6-5ubuntu1_s390x.deb ... 359s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 359s Selecting previously unselected package mpi-default-bin. 359s Preparing to unpack .../106-mpi-default-bin_1.15_s390x.deb ... 359s Unpacking mpi-default-bin (1.15) ... 359s Selecting previously unselected package lammps. 359s Preparing to unpack .../107-lammps_20240207+dfsg-1_s390x.deb ... 359s Unpacking lammps (20240207+dfsg-1) ... 359s Selecting previously unselected package autopkgtest-satdep. 359s Preparing to unpack .../108-1-autopkgtest-satdep.deb ... 359s Unpacking autopkgtest-satdep (0) ... 359s Setting up libxcb-dri3-0:s390x (1.15-1) ... 359s Setting up libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 359s Setting up libpixman-1-0:s390x (0.42.2-1) ... 359s Setting up librdmacm1:s390x (50.0-1) ... 359s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 359s Setting up libx11-xcb1:s390x (2:1.8.7-1) ... 359s Setting up libpciaccess0:s390x (0.17-3) ... 359s Setting up libdouble-conversion3:s390x (3.3.0-1) ... 359s Setting up libdrm-nouveau2:s390x (2.4.120-2) ... 359s Setting up libxcb-xfixes0:s390x (1.15-1) ... 359s Setting up libogg0:s390x (1.3.5-3) ... 359s Setting up proj-data (9.3.1-1) ... 359s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 359s Setting up lammps-data (20240207+dfsg-1) ... 359s Setting up libxcb-render0:s390x (1.15-1) ... 359s Setting up libdrm-radeon1:s390x (2.4.120-2) ... 359s Setting up libglvnd0:s390x (1.7.0-1) ... 359s Setting up libxcb-glx0:s390x (1.15-1) ... 359s Setting up x11-common (1:7.7+23ubuntu2) ... 359s Setting up libdeflate0:s390x (1.19-1) ... 359s Setting up linux-libc-dev:s390x (6.8.0-11.11) ... 359s Setting up libxcb-shm0:s390x (1.15-1) ... 359s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 359s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 359s Setting up libaec0:s390x (1.1.2-1) ... 359s Setting up libopengl0:s390x (1.7.0-1) ... 359s Setting up libxxf86vm1:s390x (1:1.1.4-1build3) ... 359s Setting up gcc-12-base:s390x (12.3.0-15ubuntu1) ... 359s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu1) ... 359s Setting up libxcb-present0:s390x (1.15-1) ... 359s Setting up libblas3:s390x (3.12.0-3) ... 359s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 359s Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ... 359s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 359s Setting up libmunge2:s390x (0.5.15-3ubuntu1) ... 359s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 359s Setting up libxfixes3:s390x (1:6.0.0-2) ... 359s Setting up libxcb-sync1:s390x (1.15-1) ... 359s Setting up fonts-dejavu-mono (2.37-8) ... 359s Setting up libhwloc15:s390x (2.10.0-1) ... 359s Setting up libmpc3:s390x (1.3.1-1) ... 359s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ... 359s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 359s Setting up libjsoncpp25:s390x (1.9.5-6) ... 359s Setting up fonts-dejavu-core (2.37-8) ... 359s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 359s Setting up libfftw3-double3:s390x (3.3.10-1ubuntu1) ... 359s Setting up libglapi-mesa:s390x (24.0.1-1ubuntu1) ... 359s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 359s Setting up libvulkan1:s390x (1.3.275.0-1) ... 359s Setting up libwebp7:s390x (1.3.2-0.4) ... 359s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ... 359s Setting up libxcb-dri2-0:s390x (1.15-1) ... 359s Setting up libnsl-dev:s390x (1.3.0-3) ... 359s Setting up ocl-icd-libopencl1:s390x (2.3.2-1) ... 359s Setting up libxshmfence1:s390x (1.3-1build4) ... 359s Setting up libcrypt-dev:s390x (1:4.4.36-4) ... 359s Setting up libxcb-randr0:s390x (1.15-1) ... 359s Setting up libasan8:s390x (14-20240303-1ubuntu1) ... 359s Setting up openmpi-common (4.1.6-5ubuntu1) ... 359s Setting up libxss1:s390x (1:1.2.3-1build2) ... 359s Setting up libisl23:s390x (0.26-3) ... 359s Setting up libc-dev-bin (2.39-0ubuntu2) ... 359s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 359s Setting up libllvm17:s390x (1:17.0.6-5build1) ... 359s Setting up libpython3.12:s390x (3.12.2-1) ... 359s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ... 359s Setting up libsz2:s390x (1.1.2-1) ... 359s Setting up libitm1:s390x (14-20240303-1ubuntu1) ... 359s Setting up libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ... 359s Setting up libdrm-amdgpu1:s390x (2.4.120-2) ... 359s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 359s Setting up libfabric1:s390x (1.17.0-3) ... 359s Setting up liblapack3:s390x (3.12.0-3) ... 359s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 359s Setting up cpp-12 (12.3.0-15ubuntu1) ... 359s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 359s Setting up libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ... 359s Setting up libhwloc-plugins:s390x (2.10.0-1) ... 359s Setting up libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 359s Setting up libgcc-12-dev:s390x (12.3.0-15ubuntu1) ... 359s Setting up libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 359s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 359s Setting up libc6-dev:s390x (2.39-0ubuntu2) ... 359s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 359s Setting up libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 359s Setting up libxft2:s390x (2.3.6-1) ... 359s Setting up libglx-mesa0:s390x (24.0.1-1ubuntu1) ... 359s Setting up libglx0:s390x (1.7.0-1) ... 359s Setting up libproj25:s390x (9.3.1-1) ... 359s Setting up libpmix2:s390x (5.0.1-4) ... 359s Setting up libopenmpi3:s390x (4.1.6-5ubuntu1) ... 359s Setting up libtk8.6:s390x (8.6.13-2) ... 359s Setting up libgfortran-12-dev:s390x (12.3.0-15ubuntu1) ... 359s Setting up libtbb12:s390x (2021.11.0-2ubuntu2) ... 359s Setting up libcairo2:s390x (1.18.0-1) ... 359s Setting up libgl1:s390x (1.7.0-1) ... 359s Setting up gcc-12 (12.3.0-15ubuntu1) ... 359s Setting up libglew2.2:s390x (2.2.0-4) ... 359s Setting up libnetcdf19:s390x (1:4.9.2-3ubuntu1) ... 359s Setting up libtheora0:s390x (1.1.1+dfsg.1-16.1) ... 360s Setting up libpnetcdf0d:s390x (1.12.3-2) ... 360s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 360s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 360s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 360s Setting up mpi-default-bin (1.15) ... 360s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 360s Setting up libvtk9.1:s390x (9.1.0+really9.1.0+dfsg2-7build1) ... 360s Setting up gfortran-12 (12.3.0-15ubuntu1) ... 360s Setting up libkim-api2:s390x (2.3.0-1) ... 360s Setting up liblammps0:s390x (20240207+dfsg-1) ... 360s Setting up lammps (20240207+dfsg-1) ... 360s Setting up autopkgtest-satdep (0) ... 360s Processing triggers for man-db (2.12.0-3) ... 360s Processing triggers for libc-bin (2.39-0ubuntu2) ... 364s (Reading database ... 55757 files and directories currently installed.) 364s Removing autopkgtest-satdep (0) ... 364s autopkgtest [23:39:00]: test crack: [----------------------- 364s LAMMPS (7 Feb 2024 - Update 1) 364s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 364s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 364s using 1 OpenMP thread(s) per MPI task 364s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 364s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 364s 2 by 1 by 1 MPI processor grid 364s Created 8141 atoms 364s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 364s create_atoms CPU = 0.002 seconds 364s 302 atoms in group lower 364s 302 atoms in group upper 364s 604 atoms in group boundary 364s 7537 atoms in group mobile 364s 841 atoms in group leftupper 364s 841 atoms in group leftlower 364s Setting atom values ... 364s 841 settings made for type 364s Setting atom values ... 364s 841 settings made for type 364s Setting atom values ... 364s 302 settings made for type 364s Setting atom values ... 364s 302 settings made for type 364s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 364s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 364s Neighbor list info ... 364s update: every = 1 steps, delay = 5 steps, check = yes 364s max neighbors/atom: 2000, page size: 100000 364s master list distance cutoff = 2.8 364s ghost atom cutoff = 2.8 364s binsize = 1.4, bins = 80 56 1 364s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 364s (1) pair lj/cut, perpetual 364s attributes: half, newton on 364s pair build: half/bin/atomonly/newton 364s stencil: half/bin/2d 364s bin: standard 364s Setting up Verlet run ... 364s Unit style : lj 364s Current step : 0 364s Time step : 0.003 364s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 364s Step Temp E_pair E_mol TotEng Press Volume 364s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 365s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 365s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 366s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 366s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 367s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 367s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 368s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 368s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 369s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 369s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 370s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 370s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 371s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 371s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 372s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 372s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 373s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 373s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 374s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 374s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 375s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 375s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 376s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 376s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 377s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 377s Loop time of 12.2969 on 2 procs for 5000 steps with 8141 atoms 377s 377s Performance: 105391.991 tau/day, 406.605 timesteps/s, 3.310 Matom-step/s 377s 48.9% CPU use with 2 MPI tasks x 1 OpenMP threads 377s 377s MPI task timing breakdown: 377s Section | min time | avg time | max time |%varavg| %total 377s --------------------------------------------------------------- 377s Pair | 5.4495 | 5.5286 | 5.6077 | 3.4 | 44.96 377s Neigh | 0.19018 | 0.19077 | 0.19137 | 0.1 | 1.55 377s Comm | 5.8339 | 6.0727 | 6.3116 | 9.7 | 49.38 377s Output | 0.0088486 | 0.0096517 | 0.010455 | 0.8 | 0.08 377s Modify | 0.24638 | 0.25081 | 0.25524 | 0.9 | 2.04 377s Other | | 0.2444 | | | 1.99 377s 377s Nlocal: 4070.5 ave 4085 max 4056 min 377s Histogram: 1 0 0 0 0 0 0 0 0 1 377s Nghost: 207 ave 208 max 206 min 377s Histogram: 1 0 0 0 0 0 0 0 0 1 377s Neighs: 35700 ave 35927 max 35473 min 377s Histogram: 1 0 0 0 0 0 0 0 0 1 377s 377s Total # of neighbors = 71400 377s Ave neighs/atom = 8.7704213 377s Neighbor list builds = 106 377s Dangerous builds = 0 377s Total wall time: 0:00:12 377s LAMMPS (7 Feb 2024 - Update 1) 388s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 388s using 1 OpenMP thread(s) per MPI task 388s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 388s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 388s 1 by 1 by 1 MPI processor grid 388s Created 8141 atoms 388s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 388s create_atoms CPU = 0.002 seconds 388s 302 atoms in group lower 388s 302 atoms in group upper 388s 604 atoms in group boundary 388s 7537 atoms in group mobile 388s 841 atoms in group leftupper 388s 841 atoms in group leftlower 388s Setting atom values ... 388s 841 settings made for type 388s Setting atom values ... 388s 841 settings made for type 388s Setting atom values ... 388s 302 settings made for type 388s Setting atom values ... 388s 302 settings made for type 388s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 388s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 388s Neighbor list info ... 388s update: every = 1 steps, delay = 5 steps, check = yes 388s max neighbors/atom: 2000, page size: 100000 388s master list distance cutoff = 2.8 388s ghost atom cutoff = 2.8 388s binsize = 1.4, bins = 80 56 1 388s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 388s (1) pair lj/cut, perpetual 388s attributes: half, newton on 388s pair build: half/bin/atomonly/newton 388s stencil: half/bin/2d 388s bin: standard 388s Setting up Verlet run ... 388s Unit style : lj 388s Current step : 0 388s Time step : 0.003 388s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 388s Step Temp E_pair E_mol TotEng Press Volume 388s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 388s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 388s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 388s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 388s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 388s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 388s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 388s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 388s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 388s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 388s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 388s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 388s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 388s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 388s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 388s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 388s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 388s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 388s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 388s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 388s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 388s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 388s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 389s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 389s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 389s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 389s Loop time of 11.9899 on 1 procs for 5000 steps with 8141 atoms 389s 389s Performance: 108091.415 tau/day, 417.019 timesteps/s, 3.395 Matom-step/s 389s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads 389s 389s MPI task timing breakdown: 389s Section | min time | avg time | max time |%varavg| %total 389s --------------------------------------------------------------- 389s Pair | 11.001 | 11.001 | 11.001 | 0.0 | 91.76 389s Neigh | 0.34821 | 0.34821 | 0.34821 | 0.0 | 2.90 389s Comm | 0.0041923 | 0.0041923 | 0.0041923 | 0.0 | 0.03 389s Output | 0.0019041 | 0.0019041 | 0.0019041 | 0.0 | 0.02 389s Modify | 0.47892 | 0.47892 | 0.47892 | 0.0 | 3.99 389s Other | | 0.1553 | | | 1.29 389s 389s Nlocal: 8141 ave 8141 max 8141 min 389s Histogram: 1 0 0 0 0 0 0 0 0 0 389s Nghost: 0 ave 0 max 0 min 389s Histogram: 1 0 0 0 0 0 0 0 0 0 389s Neighs: 71389 ave 71389 max 71389 min 389s Histogram: 1 0 0 0 0 0 0 0 0 0 389s 389s Total # of neighbors = 71389 389s Ave neighs/atom = 8.7690701 389s Neighbor list builds = 100 389s Dangerous builds = 0 389s Total wall time: 0:00:12 389s run: OK 389s autopkgtest [23:39:25]: test crack: -----------------------] 390s crack PASS 390s autopkgtest [23:39:26]: test crack: - - - - - - - - - - results - - - - - - - - - - 390s autopkgtest [23:39:26]: test dipole: preparing testbed 391s Reading package lists... 391s Building dependency tree... 391s Reading state information... 391s Starting pkgProblemResolver with broken count: 0 391s Starting 2 pkgProblemResolver with broken count: 0 391s Done 392s The following NEW packages will be installed: 392s autopkgtest-satdep 392s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 392s Need to get 0 B/704 B of archives. 392s After this operation, 0 B of additional disk space will be used. 392s Get:1 /tmp/autopkgtest.E26P9T/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 392s Selecting previously unselected package autopkgtest-satdep. 392s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55757 files and directories currently installed.) 392s Preparing to unpack .../2-autopkgtest-satdep.deb ... 392s Unpacking autopkgtest-satdep (0) ... 392s Setting up autopkgtest-satdep (0) ... 394s (Reading database ... 55757 files and directories currently installed.) 394s Removing autopkgtest-satdep (0) ... 394s autopkgtest [23:39:30]: test dipole: [----------------------- 395s LAMMPS (7 Feb 2024 - Update 1) 395s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 395s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 395s using 1 OpenMP thread(s) per MPI task 395s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 395s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 395s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 395s 2 by 1 by 1 MPI processor grid 395s Created 200 atoms 395s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 395s create_atoms CPU = 0.001 seconds 395s Setting atom values ... 395s 200 settings made for mass 395s Setting atom values ... 395s 200 settings made for dipole/random 395s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 395s Neighbor list info ... 395s update: every = 1 steps, delay = 0 steps, check = yes 395s max neighbors/atom: 2000, page size: 100000 395s master list distance cutoff = 2.8 395s ghost atom cutoff = 2.8 395s binsize = 1.4, bins = 13 13 2 395s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 395s (1) pair lj/cut/dipole/cut, perpetual 395s attributes: half, newton on 395s pair build: half/bin/atomonly/newton 395s stencil: half/bin/2d 395s bin: standard 395s Setting up Verlet run ... 395s Unit style : lj 395s Current step : 0 395s Time step : 0.005 395s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 395s Step Temp E_pair c_erot TotEng Press 395s 0 0 -2.1717485 0 -2.1717485 -2.5549017 395s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 395s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 395s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 395s 2000 0.41682174 -2.8150621 0.23053133 -2.4003244 -0.12755967 395s 2500 0.42226151 -2.7992773 0.21201574 -2.3791271 -0.42717565 395s 3000 0.40912644 -2.7687377 0.19983693 -2.3616569 0.13572202 395s 3500 0.43061123 -2.7771436 0.18913682 -2.3486855 -0.68871101 395s 4000 0.47642054 -2.8606122 0.23261313 -2.3865738 -0.26385194 395s 4500 0.43856522 -2.8161061 0.23395024 -2.3797337 -0.2451526 395s 5000 0.42765477 -2.8393865 0.27394472 -2.41387 -0.2578236 395s 5500 0.46375408 -2.8523674 0.26128049 -2.3909321 -0.074469682 395s 6000 0.37810306 -2.7407945 0.24127395 -2.364582 -0.017656351 395s 6500 0.40670883 -2.7670792 0.23827482 -2.3624039 -0.4153209 395s 7000 0.43381285 -2.7910058 0.24717951 -2.359362 -0.32827324 396s 7500 0.41395656 -2.7720326 0.24704428 -2.3601459 -0.31058846 396s 8000 0.42896544 -2.7586695 0.21848971 -2.3318489 -0.24582158 396s 8500 0.4159837 -2.7285922 0.20349242 -2.3146884 -0.21727121 396s 9000 0.43247532 -2.7365389 0.19865458 -2.306226 -0.13110924 396s 9500 0.4876086 -2.785822 0.20388831 -2.3006515 -0.080937633 396s 10000 0.42948035 -2.7655989 0.23832814 -2.3382659 -0.2360635 396s Loop time of 1.15416 on 2 procs for 10000 steps with 200 atoms 396s 396s Performance: 3742991.562 tau/day, 8664.332 timesteps/s, 1.733 Matom-step/s 396s 43.1% CPU use with 2 MPI tasks x 1 OpenMP threads 396s 396s MPI task timing breakdown: 396s Section | min time | avg time | max time |%varavg| %total 396s --------------------------------------------------------------- 396s Pair | 0.34045 | 0.35436 | 0.36828 | 2.3 | 30.70 396s Neigh | 0.021041 | 0.021742 | 0.022442 | 0.5 | 1.88 396s Comm | 0.6524 | 0.67013 | 0.68785 | 2.2 | 58.06 396s Output | 0.00085598 | 0.0011991 | 0.0015422 | 1.0 | 0.10 396s Modify | 0.041806 | 0.04604 | 0.050274 | 2.0 | 3.99 396s Other | | 0.06069 | | | 5.26 396s 396s Nlocal: 100 ave 103 max 97 min 396s Histogram: 1 0 0 0 0 0 0 0 0 1 396s Nghost: 125 ave 127 max 123 min 396s Histogram: 1 0 0 0 0 0 0 0 0 1 396s Neighs: 832 ave 852 max 812 min 396s Histogram: 1 0 0 0 0 0 0 0 0 1 396s 396s Total # of neighbors = 1664 396s Ave neighs/atom = 8.32 396s Neighbor list builds = 682 396s Dangerous builds = 0 396s Total wall time: 0:00:01 396s LAMMPS (7 Feb 2024 - Update 1) 397s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 397s using 1 OpenMP thread(s) per MPI task 397s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 397s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 397s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 397s 1 by 1 by 1 MPI processor grid 397s Created 200 atoms 397s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 397s create_atoms CPU = 0.001 seconds 397s Setting atom values ... 397s 200 settings made for mass 397s Setting atom values ... 397s 200 settings made for dipole/random 397s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 397s Neighbor list info ... 397s update: every = 1 steps, delay = 0 steps, check = yes 397s max neighbors/atom: 2000, page size: 100000 397s master list distance cutoff = 2.8 397s ghost atom cutoff = 2.8 397s binsize = 1.4, bins = 13 13 2 397s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 397s (1) pair lj/cut/dipole/cut, perpetual 397s attributes: half, newton on 397s pair build: half/bin/atomonly/newton 397s stencil: half/bin/2d 397s bin: standard 397s Setting up Verlet run ... 397s Unit style : lj 397s Current step : 0 397s Time step : 0.005 397s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 397s Step Temp E_pair c_erot TotEng Press 397s 0 0 -2.1717485 0 -2.1717485 -2.5549017 397s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 397s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 397s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 397s 2000 0.41682156 -2.815062 0.23053141 -2.4003245 -0.12755875 397s 2500 0.42249692 -2.7995109 0.2120131 -2.3791265 -0.42816448 397s 3000 0.41616758 -2.7781108 0.20164728 -2.364024 -0.020886314 397s 3500 0.45899292 -2.845444 0.21311649 -2.388746 -0.27031162 397s 4000 0.44192149 -2.8102242 0.2031683 -2.3705124 -0.16716401 397s 4500 0.50397271 -2.8780965 0.21354686 -2.3766437 -0.13676854 397s 5000 0.43620945 -2.7993403 0.2117878 -2.3653119 0.13226909 397s 5500 0.42861319 -2.7809996 0.2051046 -2.3545294 -0.19042969 397s 6000 0.46841814 -2.816026 0.19950812 -2.34995 -0.41629929 397s 6500 0.41697733 -2.7700652 0.20994527 -2.3551728 -0.27762295 397s 7000 0.45187547 -2.7823572 0.20168068 -2.3327412 -0.36487435 397s 7500 0.45027947 -2.8258363 0.25315235 -2.3778082 -0.30198681 397s 8000 0.45478856 -2.8289685 0.2494063 -2.3764539 0.02766223 397s 8500 0.47491136 -2.844227 0.24174939 -2.3716901 -0.18129259 397s 9000 0.40849079 -2.7425167 0.22352464 -2.3360684 -0.0069144283 397s 9500 0.41803515 -2.7832433 0.26484963 -2.3672983 -0.036254325 397s 10000 0.43935862 -2.7528327 0.22318819 -2.3156709 -0.14674506 397s Loop time of 0.952355 on 1 procs for 10000 steps with 200 atoms 397s 397s Performance: 4536125.210 tau/day, 10500.290 timesteps/s, 2.100 Matom-step/s 397s 96.3% CPU use with 1 MPI tasks x 1 OpenMP threads 397s 397s MPI task timing breakdown: 397s Section | min time | avg time | max time |%varavg| %total 397s --------------------------------------------------------------- 397s Pair | 0.76352 | 0.76352 | 0.76352 | 0.0 | 80.17 397s Neigh | 0.044562 | 0.044562 | 0.044562 | 0.0 | 4.68 397s Comm | 0.03593 | 0.03593 | 0.03593 | 0.0 | 3.77 397s Output | 0.00029028 | 0.00029028 | 0.00029028 | 0.0 | 0.03 397s Modify | 0.094467 | 0.094467 | 0.094467 | 0.0 | 9.92 397s Other | | 0.01359 | | | 1.43 397s 397s Nlocal: 200 ave 200 max 200 min 397s Histogram: 1 0 0 0 0 0 0 0 0 0 397s Nghost: 146 ave 146 max 146 min 397s Histogram: 1 0 0 0 0 0 0 0 0 0 397s Neighs: 1639 ave 1639 max 1639 min 397s Histogram: 1 0 0 0 0 0 0 0 0 0 397s 397s Total # of neighbors = 1639 397s Ave neighs/atom = 8.195 397s Neighbor list builds = 687 397s Dangerous builds = 0 397s Total wall time: 0:00:00 397s run: OK 397s autopkgtest [23:39:33]: test dipole: -----------------------] 398s autopkgtest [23:39:34]: test dipole: - - - - - - - - - - results - - - - - - - - - - 398s dipole PASS 398s autopkgtest [23:39:34]: test ellipse: preparing testbed 400s Reading package lists... 400s Building dependency tree... 400s Reading state information... 400s Starting pkgProblemResolver with broken count: 0 400s Starting 2 pkgProblemResolver with broken count: 0 400s Done 400s The following NEW packages will be installed: 400s autopkgtest-satdep 400s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 400s Need to get 0 B/704 B of archives. 400s After this operation, 0 B of additional disk space will be used. 400s Get:1 /tmp/autopkgtest.E26P9T/3-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 400s Selecting previously unselected package autopkgtest-satdep. 401s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55757 files and directories currently installed.) 401s Preparing to unpack .../3-autopkgtest-satdep.deb ... 401s Unpacking autopkgtest-satdep (0) ... 401s Setting up autopkgtest-satdep (0) ... 402s (Reading database ... 55757 files and directories currently installed.) 402s Removing autopkgtest-satdep (0) ... 403s autopkgtest [23:39:39]: test ellipse: [----------------------- 403s LAMMPS (7 Feb 2024 - Update 1) 403s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 403s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 403s using 1 OpenMP thread(s) per MPI task 403s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 403s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 403s 2 by 1 by 1 MPI processor grid 403s Created 400 atoms 403s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 403s create_atoms CPU = 0.001 seconds 403s Setting atom values ... 403s 48 settings made for type/fraction 403s Setting atom values ... 403s 352 settings made for mass 403s Setting atom values ... 403s 48 settings made for mass 403s Setting atom values ... 403s 352 settings made for shape 403s Setting atom values ... 403s 48 settings made for shape 403s Setting atom values ... 403s 400 settings made for quat/random 403s 352 atoms in group spheroid 403s 403s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 403s 403s Your simulation uses code contributions which should be cited: 403s - pair gayberne command: doi:10.1063/1.3058435 403s The log file lists these citations in BibTeX format. 403s 403s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 403s 403s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 403s Neighbor list info ... 403s update: every = 1 steps, delay = 0 steps, check = yes 403s max neighbors/atom: 2000, page size: 100000 403s master list distance cutoff = 4.8 403s ghost atom cutoff = 4.8 403s binsize = 2.4, bins = 59 59 3 403s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 403s (1) pair gayberne, perpetual 403s attributes: half, newton on 403s pair build: half/bin/atomonly/newton 403s stencil: half/bin/2d 403s bin: standard 403s Setting up Verlet run ... 403s Unit style : lj 403s Current step : 0 403s Time step : 0.002 403s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 403s Step c_rot E_pair TotEng Press Volume 403s 0 2.2638298 0 2.394 0.04788 20000 403s 100 1.7507088 0 1.8513745 0.036020794 20558.953 403s 200 2.2704785 0 2.401031 0.046552815 20630.598 403s 300 1.862122 0 1.969194 0.042610426 18485.56 403s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 403s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 403s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 403s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 403s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 403s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 403s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 403s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 404s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 404s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 404s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 404s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 404s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 404s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 404s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 404s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 404s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 404s Loop time of 1.32071 on 2 procs for 2000 steps with 400 atoms 404s 404s Performance: 261676.601 tau/day, 1514.332 timesteps/s, 605.733 katom-step/s 404s 45.8% CPU use with 2 MPI tasks x 1 OpenMP threads 404s 404s MPI task timing breakdown: 404s Section | min time | avg time | max time |%varavg| %total 404s --------------------------------------------------------------- 404s Pair | 0.4124 | 0.43312 | 0.45383 | 3.1 | 32.79 404s Neigh | 0.014281 | 0.014394 | 0.014508 | 0.1 | 1.09 404s Comm | 0.56175 | 0.58255 | 0.60336 | 2.7 | 44.11 404s Output | 0.030492 | 0.030618 | 0.030744 | 0.1 | 2.32 404s Modify | 0.206 | 0.20831 | 0.21062 | 0.5 | 15.77 404s Other | | 0.05173 | | | 3.92 404s 404s Nlocal: 200 ave 227 max 173 min 404s Histogram: 1 0 0 0 0 0 0 0 0 1 404s Nghost: 204 ave 206 max 202 min 404s Histogram: 1 0 0 0 0 0 0 0 0 1 404s Neighs: 1479.5 ave 1784 max 1175 min 404s Histogram: 1 0 0 0 0 0 0 0 0 1 404s 404s Total # of neighbors = 2959 404s Ave neighs/atom = 7.3975 404s Neighbor list builds = 348 404s Dangerous builds = 0 404s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 404s Setting up Verlet run ... 404s Unit style : lj 404s Current step : 2000 404s Time step : 0.002 404s Per MPI rank memory allocation (min/avg/max) = 6.9 | 6.9 | 6.9 Mbytes 404s Step c_rot E_pair TotEng Press Volume 404s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 404s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 404s 2200 1.9590367 -3.3182662 -1.3678333 0.35910433 1149.0282 404s 2300 2.0250309 -3.3891121 -1.3644964 0.46285769 1149.0282 405s 2400 2.085533 -3.4551199 -1.3401904 0.61189864 1149.0282 405s 2500 2.077574 -3.4482359 -1.3340251 1.0190852 1149.0282 405s 2600 2.0840722 -3.4558292 -1.3514352 0.7597702 1149.0282 405s 2700 2.1174248 -3.4915978 -1.3720622 0.82088405 1149.0282 405s 2800 2.0120484 -3.3803498 -1.3351386 1.0472272 1149.0282 405s 2900 2.095772 -3.4692917 -1.3762115 0.6503267 1149.0282 405s 3000 2.005185 -3.3743963 -1.3771538 0.74858505 1149.0282 405s 3100 2.0635196 -3.4375558 -1.3792354 0.72379626 1149.0282 405s 3200 2.0131468 -3.3825952 -1.3703433 1.1087307 1149.0282 405s 3300 2.0467878 -3.4185419 -1.3532024 0.7400243 1149.0282 405s 3400 1.9629403 -3.328306 -1.3871127 0.78865882 1149.0282 405s 3500 2.0576813 -3.4288036 -1.3361687 0.72305492 1149.0282 406s 3600 1.9638286 -3.3256476 -1.3663274 0.83792378 1149.0282 406s 3700 1.9900562 -3.3535764 -1.3259922 0.4389563 1149.0282 406s 3800 1.9016735 -3.2598525 -1.3493967 0.56256005 1149.0282 406s 3900 2.002131 -3.3658151 -1.3768647 0.59924524 1149.0282 406s 4000 1.9750784 -3.33731 -1.3724406 0.70702486 1149.0282 406s Loop time of 1.62251 on 2 procs for 2000 steps with 400 atoms 406s 406s Performance: 213003.298 tau/day, 1232.658 timesteps/s, 493.063 katom-step/s 406s 40.8% CPU use with 2 MPI tasks x 1 OpenMP threads 406s 406s MPI task timing breakdown: 406s Section | min time | avg time | max time |%varavg| %total 406s --------------------------------------------------------------- 406s Pair | 0.40568 | 0.54051 | 0.67534 | 18.3 | 33.31 406s Neigh | 0.0026049 | 0.0035944 | 0.0045838 | 1.7 | 0.22 406s Comm | 0.77278 | 0.92167 | 1.0706 | 15.5 | 56.81 406s Output | 0.033887 | 0.034323 | 0.03476 | 0.2 | 2.12 406s Modify | 0.057532 | 0.070707 | 0.083882 | 5.0 | 4.36 406s Other | | 0.0517 | | | 3.19 406s 406s Nlocal: 200 ave 242 max 158 min 406s Histogram: 1 0 0 0 0 0 0 0 0 1 406s Nghost: 186 ave 206 max 166 min 406s Histogram: 1 0 0 0 0 0 0 0 0 1 406s Neighs: 1548.5 ave 2045 max 1052 min 406s Histogram: 1 0 0 0 0 0 0 0 0 1 406s 406s Total # of neighbors = 3097 406s Ave neighs/atom = 7.7425 406s Neighbor list builds = 48 406s Dangerous builds = 0 406s Total wall time: 0:00:02 406s LAMMPS (7 Feb 2024 - Update 1) 407s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 407s using 1 OpenMP thread(s) per MPI task 407s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 407s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 407s 1 by 1 by 1 MPI processor grid 407s Created 400 atoms 407s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 407s create_atoms CPU = 0.001 seconds 407s Setting atom values ... 407s 48 settings made for type/fraction 407s Setting atom values ... 407s 352 settings made for mass 407s Setting atom values ... 407s 48 settings made for mass 407s Setting atom values ... 407s 352 settings made for shape 407s Setting atom values ... 407s 48 settings made for shape 407s Setting atom values ... 407s 400 settings made for quat/random 407s 352 atoms in group spheroid 407s 407s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 407s 407s Your simulation uses code contributions which should be cited: 407s - pair gayberne command: doi:10.1063/1.3058435 407s The log file lists these citations in BibTeX format. 407s 407s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 407s 407s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 407s Neighbor list info ... 407s update: every = 1 steps, delay = 0 steps, check = yes 407s max neighbors/atom: 2000, page size: 100000 407s master list distance cutoff = 4.8 407s ghost atom cutoff = 4.8 407s binsize = 2.4, bins = 59 59 3 407s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 407s (1) pair gayberne, perpetual 407s attributes: half, newton on 407s pair build: half/bin/atomonly/newton 407s stencil: half/bin/2d 407s bin: standard 407s Setting up Verlet run ... 407s Unit style : lj 407s Current step : 0 407s Time step : 0.002 407s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 407s Step c_rot E_pair TotEng Press Volume 407s 0 2.2638298 0 2.394 0.04788 20000 407s 100 1.7507088 0 1.8513745 0.036020794 20558.953 407s 200 2.2704785 0 2.401031 0.046552815 20630.598 407s 300 1.862122 0 1.969194 0.042610426 18485.56 407s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 407s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 407s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 407s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 407s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 407s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 407s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 407s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 407s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 407s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 407s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 407s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 407s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 407s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 407s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 407s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 407s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 407s Loop time of 1.15938 on 1 procs for 2000 steps with 400 atoms 407s 407s Performance: 298090.772 tau/day, 1725.062 timesteps/s, 690.025 katom-step/s 407s 98.6% CPU use with 1 MPI tasks x 1 OpenMP threads 407s 407s MPI task timing breakdown: 407s Section | min time | avg time | max time |%varavg| %total 407s --------------------------------------------------------------- 407s Pair | 0.86676 | 0.86676 | 0.86676 | 0.0 | 74.76 409s Neigh | 0.028095 | 0.028095 | 0.028095 | 0.0 | 2.42 409s Comm | 0.01018 | 0.01018 | 0.01018 | 0.0 | 0.88 409s Output | 0.024325 | 0.024325 | 0.024325 | 0.0 | 2.10 409s Modify | 0.22448 | 0.22448 | 0.22448 | 0.0 | 19.36 409s Other | | 0.005532 | | | 0.48 409s 409s Nlocal: 400 ave 400 max 400 min 409s Histogram: 1 0 0 0 0 0 0 0 0 0 409s Nghost: 255 ave 255 max 255 min 409s Histogram: 1 0 0 0 0 0 0 0 0 0 409s Neighs: 2959 ave 2959 max 2959 min 409s Histogram: 1 0 0 0 0 0 0 0 0 0 409s 409s Total # of neighbors = 2959 409s Ave neighs/atom = 7.3975 409s Neighbor list builds = 348 409s Dangerous builds = 0 409s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 409s Setting up Verlet run ... 409s Unit style : lj 409s Current step : 2000 409s Time step : 0.002 409s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 409s Step c_rot E_pair TotEng Press Volume 409s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 409s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 409s 2200 1.9590368 -3.3182663 -1.3678333 0.35910425 1149.0282 409s 2300 2.0250308 -3.3891119 -1.3644964 0.46285779 1149.0282 409s 2400 2.0855331 -3.45512 -1.3401904 0.61189841 1149.0282 409s 2500 2.0775737 -3.4482356 -1.3340258 1.0190836 1149.0282 409s 2600 2.084072 -3.4558289 -1.3514359 0.75976918 1149.0282 409s 2700 2.1174308 -3.4916046 -1.3720664 0.82086811 1149.0282 409s 2800 2.0120441 -3.3803491 -1.3351469 1.047208 1149.0282 409s 2900 2.0957766 -3.4692999 -1.376208 0.65043335 1149.0282 409s 3000 2.00512 -3.3743288 -1.3771585 0.7487656 1149.0282 409s 3100 2.0635277 -3.4376031 -1.3792202 0.72375619 1149.0282 409s 3200 2.0130716 -3.3825107 -1.3702334 1.1098674 1149.0282 409s 3300 2.0463568 -3.4179583 -1.3534773 0.73871011 1149.0282 409s 3400 1.9649348 -3.3304023 -1.3860539 0.77548498 1149.0282 409s 3500 2.0501941 -3.4213612 -1.3373407 0.73278199 1149.0282 409s 3600 1.9881829 -3.3519947 -1.3795107 0.73402726 1149.0282 409s 3700 1.9994085 -3.3655341 -1.3599281 0.3911747 1149.0282 409s 3800 1.963869 -3.3264036 -1.3599099 0.50519594 1149.0282 409s 3900 1.9970107 -3.3624111 -1.3743885 1.0960718 1149.0282 409s 4000 2.0620245 -3.4315752 -1.3998675 0.54966642 1149.0282 409s Loop time of 1.2638 on 1 procs for 2000 steps with 400 atoms 409s 409s Performance: 273461.676 tau/day, 1582.533 timesteps/s, 633.013 katom-step/s 409s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 409s 409s MPI task timing breakdown: 409s Section | min time | avg time | max time |%varavg| %total 409s --------------------------------------------------------------- 409s Pair | 1.0778 | 1.0778 | 1.0778 | 0.0 | 85.29 409s Neigh | 0.0072068 | 0.0072068 | 0.0072068 | 0.0 | 0.57 409s Comm | 0.010201 | 0.010201 | 0.010201 | 0.0 | 0.81 409s Output | 0.024837 | 0.024837 | 0.024837 | 0.0 | 1.97 409s Modify | 0.13876 | 0.13876 | 0.13876 | 0.0 | 10.98 409s Other | | 0.004957 | | | 0.39 409s 409s Nlocal: 400 ave 400 max 400 min 409s Histogram: 1 0 0 0 0 0 0 0 0 0 409s Nghost: 240 ave 240 max 240 min 409s Histogram: 1 0 0 0 0 0 0 0 0 0 409s Neighs: 3096 ave 3096 max 3096 min 409s Histogram: 1 0 0 0 0 0 0 0 0 0 409s 409s Total # of neighbors = 3096 409s Ave neighs/atom = 7.74 409s Neighbor list builds = 49 409s Dangerous builds = 0 409s Total wall time: 0:00:02 409s LAMMPS (7 Feb 2024 - Update 1) 409s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 409s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 409s using 1 OpenMP thread(s) per MPI task 409s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 409s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 409s 2 by 1 by 1 MPI processor grid 409s Created 400 atoms 409s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 409s create_atoms CPU = 0.001 seconds 409s Setting atom values ... 409s 48 settings made for type/fraction 409s Setting atom values ... 409s 352 settings made for mass 409s Setting atom values ... 409s 48 settings made for mass 409s Setting atom values ... 409s 352 settings made for shape 409s Setting atom values ... 409s 48 settings made for shape 409s Setting atom values ... 409s 400 settings made for quat/random 409s 352 atoms in group spheroid 409s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 409s Neighbor list info ... 409s update: every = 1 steps, delay = 0 steps, check = yes 409s max neighbors/atom: 2000, page size: 100000 409s master list distance cutoff = 4.8 409s ghost atom cutoff = 4.8 409s binsize = 2.4, bins = 59 59 3 409s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 409s (1) pair resquared, perpetual 409s attributes: half, newton on 409s pair build: half/bin/atomonly/newton 409s stencil: half/bin/2d 409s bin: standard 409s Setting up Verlet run ... 409s Unit style : lj 409s Current step : 0 409s Time step : 0.002 409s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 409s Step c_rot E_pair TotEng Press Volume 409s 0 2.2638298 0 2.394 0.04788 20000 409s 100 1.7507088 0 1.8513745 0.036020794 20558.953 409s 200 2.2704785 0 2.401031 0.046552815 20630.598 409s 300 1.862122 0 1.969194 0.042610426 18485.56 409s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 409s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 409s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 409s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 409s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 409s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 409s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 410s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 410s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 410s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 410s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 410s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 410s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 410s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 410s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 410s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 411s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 411s Loop time of 2.0145 on 2 procs for 2000 steps with 400 atoms 411s 411s Performance: 171556.047 tau/day, 992.801 timesteps/s, 397.120 katom-step/s 411s 47.3% CPU use with 2 MPI tasks x 1 OpenMP threads 411s 411s MPI task timing breakdown: 411s Section | min time | avg time | max time |%varavg| %total 411s --------------------------------------------------------------- 411s Pair | 0.7818 | 0.78895 | 0.79609 | 0.8 | 39.16 411s Neigh | 0.014475 | 0.014678 | 0.01488 | 0.2 | 0.73 411s Comm | 0.91418 | 0.92109 | 0.928 | 0.7 | 45.72 411s Output | 0.030093 | 0.030198 | 0.030302 | 0.1 | 1.50 411s Modify | 0.20835 | 0.20839 | 0.20844 | 0.0 | 10.34 411s Other | | 0.05119 | | | 2.54 411s 411s Nlocal: 200 ave 206 max 194 min 411s Histogram: 1 0 0 0 0 0 0 0 0 1 411s Nghost: 166 ave 172 max 160 min 411s Histogram: 1 0 0 0 0 0 0 0 0 1 411s Neighs: 990.5 ave 1028 max 953 min 411s Histogram: 1 0 0 0 0 0 0 0 0 1 411s 411s Total # of neighbors = 1981 411s Ave neighs/atom = 4.9525 411s Neighbor list builds = 410 411s Dangerous builds = 0 411s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 411s Setting up Verlet run ... 411s Unit style : lj 411s Current step : 2000 411s Time step : 0.002 411s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 411s Step c_rot E_pair TotEng Press Volume 411s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 411s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 411s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 411s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 411s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 412s 2500 2.1396456 0.25118294 2.3450649 1.7231479 1625.5704 412s 2600 2.1724989 0.21652796 2.36624 1.5785682 1625.5704 412s 2700 2.1347133 0.2565462 2.3819962 1.7939756 1625.5704 412s 2800 2.2187273 0.16767707 2.3890091 1.3803388 1625.5704 412s 2900 2.2653117 0.11841424 2.358481 1.1423479 1625.5704 412s 3000 2.1965681 0.19125616 2.3687823 1.55014 1625.5704 413s 3100 2.1970501 0.19052613 2.3694703 1.4706426 1625.5704 413s 3200 2.1661439 0.22324214 2.3939177 1.619691 1625.5704 413s 3300 2.1298288 0.26157991 2.3997036 1.8700501 1625.5704 413s 3400 2.1293647 0.26220526 2.373699 1.7332686 1625.5704 413s 3500 2.1835494 0.20483304 2.4031724 1.5471088 1625.5704 413s 3600 2.1875445 0.20049079 2.4159533 1.5995253 1625.5704 414s 3700 2.1186666 0.27351639 2.4141913 1.9057949 1625.5704 414s 3800 2.1752149 0.2136072 2.3067948 1.5705518 1625.5704 414s 3900 2.1976482 0.18993383 2.4017837 1.4844827 1625.5704 414s 4000 2.1788977 0.20960933 2.3437572 1.576965 1625.5704 414s Loop time of 3.37029 on 2 procs for 2000 steps with 400 atoms 414s 414s Performance: 102543.021 tau/day, 593.420 timesteps/s, 237.368 katom-step/s 414s 47.8% CPU use with 2 MPI tasks x 1 OpenMP threads 414s 414s MPI task timing breakdown: 414s Section | min time | avg time | max time |%varavg| %total 414s --------------------------------------------------------------- 414s Pair | 1.4604 | 1.5149 | 1.5693 | 4.4 | 44.95 414s Neigh | 0.0027717 | 0.0029219 | 0.0030721 | 0.3 | 0.09 414s Comm | 1.6459 | 1.703 | 1.7601 | 4.4 | 50.53 414s Output | 0.03314 | 0.033492 | 0.033843 | 0.2 | 0.99 414s Modify | 0.06683 | 0.06959 | 0.07235 | 1.0 | 2.06 414s Other | | 0.0464 | | | 1.38 414s 414s Nlocal: 200 ave 207 max 193 min 414s Histogram: 1 0 0 0 0 0 0 0 0 1 414s Nghost: 162.5 ave 165 max 160 min 414s Histogram: 1 0 0 0 0 0 0 0 0 1 414s Neighs: 966 ave 1009 max 923 min 414s Histogram: 1 0 0 0 0 0 0 0 0 1 414s 414s Total # of neighbors = 1932 414s Ave neighs/atom = 4.83 414s Neighbor list builds = 50 414s Dangerous builds = 0 414s Total wall time: 0:00:05 414s LAMMPS (7 Feb 2024 - Update 1) 416s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 416s using 1 OpenMP thread(s) per MPI task 416s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 416s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 416s 1 by 1 by 1 MPI processor grid 416s Created 400 atoms 416s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 416s create_atoms CPU = 0.001 seconds 416s Setting atom values ... 416s 48 settings made for type/fraction 416s Setting atom values ... 416s 352 settings made for mass 416s Setting atom values ... 416s 48 settings made for mass 416s Setting atom values ... 416s 352 settings made for shape 416s Setting atom values ... 416s 48 settings made for shape 416s Setting atom values ... 416s 400 settings made for quat/random 416s 352 atoms in group spheroid 416s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 416s Neighbor list info ... 416s update: every = 1 steps, delay = 0 steps, check = yes 416s max neighbors/atom: 2000, page size: 100000 416s master list distance cutoff = 4.8 416s ghost atom cutoff = 4.8 416s binsize = 2.4, bins = 59 59 3 416s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 416s (1) pair resquared, perpetual 416s attributes: half, newton on 416s pair build: half/bin/atomonly/newton 416s stencil: half/bin/2d 416s bin: standard 416s Setting up Verlet run ... 416s Unit style : lj 416s Current step : 0 416s Time step : 0.002 416s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 416s Step c_rot E_pair TotEng Press Volume 416s 0 2.2638298 0 2.394 0.04788 20000 416s 100 1.7507088 0 1.8513745 0.036020794 20558.953 416s 200 2.2704785 0 2.401031 0.046552815 20630.598 416s 300 1.862122 0 1.969194 0.042610426 18485.56 416s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 416s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 416s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 416s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 416s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 416s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 416s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 416s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 416s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 416s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 416s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 416s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 416s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 416s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 416s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 416s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 416s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 416s Loop time of 1.8492 on 1 procs for 2000 steps with 400 atoms 416s 416s Performance: 186891.321 tau/day, 1081.547 timesteps/s, 432.619 katom-step/s 416s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads 416s 416s MPI task timing breakdown: 416s Section | min time | avg time | max time |%varavg| %total 416s --------------------------------------------------------------- 416s Pair | 1.5601 | 1.5601 | 1.5601 | 0.0 | 84.36 416s Neigh | 0.02816 | 0.02816 | 0.02816 | 0.0 | 1.52 416s Comm | 0.0081907 | 0.0081907 | 0.0081907 | 0.0 | 0.44 416s Output | 0.024412 | 0.024412 | 0.024412 | 0.0 | 1.32 416s Modify | 0.22285 | 0.22285 | 0.22285 | 0.0 | 12.05 419s Other | | 0.005514 | | | 0.30 419s 419s Nlocal: 400 ave 400 max 400 min 419s Histogram: 1 0 0 0 0 0 0 0 0 0 419s Nghost: 214 ave 214 max 214 min 419s Histogram: 1 0 0 0 0 0 0 0 0 0 419s Neighs: 1981 ave 1981 max 1981 min 419s Histogram: 1 0 0 0 0 0 0 0 0 0 419s 419s Total # of neighbors = 1981 419s Ave neighs/atom = 4.9525 419s Neighbor list builds = 410 419s Dangerous builds = 0 419s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 419s Setting up Verlet run ... 419s Unit style : lj 419s Current step : 2000 419s Time step : 0.002 419s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 419s Step c_rot E_pair TotEng Press Volume 419s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 419s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 419s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 419s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 419s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 419s 2500 2.1396456 0.25118295 2.3450649 1.7231479 1625.5704 419s 2600 2.1724989 0.21652796 2.3662399 1.5785682 1625.5704 419s 2700 2.1347133 0.25654622 2.3819962 1.7939757 1625.5704 419s 2800 2.2187273 0.16767709 2.3890091 1.3803389 1625.5704 419s 2900 2.2653117 0.1184142 2.3584809 1.1423477 1625.5704 419s 3000 2.1965682 0.19125607 2.3687823 1.5501394 1625.5704 419s 3100 2.1970503 0.19052592 2.3694702 1.4706415 1625.5704 419s 3200 2.1661438 0.22324217 2.393918 1.619691 1625.5704 419s 3300 2.1298268 0.26158212 2.3997056 1.8700704 1625.5704 419s 3400 2.129366 0.26220387 2.3736989 1.7332623 1625.5704 419s 3500 2.1835467 0.20483593 2.4031735 1.5471227 1625.5704 419s 3600 2.187532 0.20050401 2.4159602 1.5996363 1625.5704 419s 3700 2.1186808 0.2735013 2.4141937 1.9057216 1625.5704 419s 3800 2.1752481 0.21357202 2.3067618 1.5703983 1625.5704 419s 3900 2.1976728 0.18990792 2.4017814 1.4843601 1625.5704 419s 4000 2.1786303 0.20989248 2.3438733 1.578595 1625.5704 419s Loop time of 3.24697 on 1 procs for 2000 steps with 400 atoms 419s 419s Performance: 106437.796 tau/day, 615.959 timesteps/s, 246.384 katom-step/s 419s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 419s 419s MPI task timing breakdown: 419s Section | min time | avg time | max time |%varavg| %total 419s --------------------------------------------------------------- 419s Pair | 3.0642 | 3.0642 | 3.0642 | 0.0 | 94.37 419s Neigh | 0.0056338 | 0.0056338 | 0.0056338 | 0.0 | 0.17 419s Comm | 0.008972 | 0.008972 | 0.008972 | 0.0 | 0.28 419s Output | 0.025038 | 0.025038 | 0.025038 | 0.0 | 0.77 419s Modify | 0.13798 | 0.13798 | 0.13798 | 0.0 | 4.25 419s Other | | 0.005107 | | | 0.16 419s 419s Nlocal: 400 ave 400 max 400 min 419s Histogram: 1 0 0 0 0 0 0 0 0 0 419s Nghost: 208 ave 208 max 208 min 419s Histogram: 1 0 0 0 0 0 0 0 0 0 419s Neighs: 1932 ave 1932 max 1932 min 419s Histogram: 1 0 0 0 0 0 0 0 0 0 419s 419s Total # of neighbors = 1932 419s Ave neighs/atom = 4.83 419s Neighbor list builds = 50 419s Dangerous builds = 0 419s Total wall time: 0:00:05 419s run: OK 420s autopkgtest [23:39:56]: test ellipse: -----------------------] 420s ellipse PASS 420s autopkgtest [23:39:56]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 420s autopkgtest [23:39:56]: test flow: preparing testbed 422s Reading package lists... 422s Building dependency tree... 422s Reading state information... 422s Starting pkgProblemResolver with broken count: 0 422s Starting 2 pkgProblemResolver with broken count: 0 422s Done 422s The following NEW packages will be installed: 422s autopkgtest-satdep 422s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 422s Need to get 0 B/704 B of archives. 422s After this operation, 0 B of additional disk space will be used. 422s Get:1 /tmp/autopkgtest.E26P9T/4-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 423s Selecting previously unselected package autopkgtest-satdep. 423s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55757 files and directories currently installed.) 423s Preparing to unpack .../4-autopkgtest-satdep.deb ... 423s Unpacking autopkgtest-satdep (0) ... 423s Setting up autopkgtest-satdep (0) ... 424s (Reading database ... 55757 files and directories currently installed.) 424s Removing autopkgtest-satdep (0) ... 425s autopkgtest [23:40:01]: test flow: [----------------------- 425s LAMMPS (7 Feb 2024 - Update 1) 425s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 425s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 425s using 1 OpenMP thread(s) per MPI task 425s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 425s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 425s 2 by 1 by 1 MPI processor grid 425s Created 420 atoms 425s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 425s create_atoms CPU = 0.001 seconds 425s 60 atoms in group lower 425s 60 atoms in group upper 425s 120 atoms in group boundary 425s 300 atoms in group flow 425s Setting atom values ... 425s 60 settings made for type 425s Setting atom values ... 425s 60 settings made for type 425s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 425s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 425s Neighbor list info ... 425s update: every = 1 steps, delay = 5 steps, check = yes 425s max neighbors/atom: 2000, page size: 100000 425s master list distance cutoff = 1.42246 425s ghost atom cutoff = 1.42246 425s binsize = 0.71123, bins = 37 32 1 425s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 425s (1) pair lj/cut, perpetual 425s attributes: half, newton on 425s pair build: half/bin/atomonly/newton 425s stencil: half/bin/2d 425s bin: standard 425s Setting up Verlet run ... 425s Unit style : lj 425s Current step : 0 425s Time step : 0.003 425s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 425s Step Temp E_pair E_mol TotEng Press Volume 425s 0 1 0 0 0.71190476 0.52314537 571.54286 425s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 425s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 425s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 425s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 425s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 425s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 425s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 425s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 425s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 425s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 425s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 425s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 425s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 425s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 425s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 425s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 426s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 426s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 426s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 426s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 426s Loop time of 0.503674 on 2 procs for 10000 steps with 420 atoms 426s 426s Performance: 5146182.557 tau/day, 19854.099 timesteps/s, 8.339 Matom-step/s 426s 38.0% CPU use with 2 MPI tasks x 1 OpenMP threads 426s 426s MPI task timing breakdown: 426s Section | min time | avg time | max time |%varavg| %total 426s --------------------------------------------------------------- 426s Pair | 0.078381 | 0.078812 | 0.079243 | 0.2 | 15.65 426s Neigh | 0.031807 | 0.031899 | 0.031992 | 0.1 | 6.33 426s Comm | 0.31175 | 0.3122 | 0.31265 | 0.1 | 61.99 426s Output | 0.00103 | 0.0014676 | 0.0019051 | 1.1 | 0.29 426s Modify | 0.035732 | 0.035764 | 0.035796 | 0.0 | 7.10 426s Other | | 0.04353 | | | 8.64 426s 426s Nlocal: 210 ave 214 max 206 min 426s Histogram: 1 0 0 0 0 0 0 0 0 1 426s Nghost: 51 ave 52 max 50 min 426s Histogram: 1 0 0 0 0 0 0 0 0 1 426s Neighs: 472 ave 494 max 450 min 426s Histogram: 1 0 0 0 0 0 0 0 0 1 426s 426s Total # of neighbors = 944 426s Ave neighs/atom = 2.247619 426s Neighbor list builds = 994 426s Dangerous builds = 0 426s Total wall time: 0:00:00 426s LAMMPS (7 Feb 2024 - Update 1) 426s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 426s using 1 OpenMP thread(s) per MPI task 426s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 426s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 426s 1 by 1 by 1 MPI processor grid 426s Created 420 atoms 426s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 426s create_atoms CPU = 0.000 seconds 426s 60 atoms in group lower 426s 60 atoms in group upper 426s 120 atoms in group boundary 426s 300 atoms in group flow 426s Setting atom values ... 426s 60 settings made for type 426s Setting atom values ... 426s 60 settings made for type 426s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 426s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 426s Neighbor list info ... 426s update: every = 1 steps, delay = 5 steps, check = yes 426s max neighbors/atom: 2000, page size: 100000 426s master list distance cutoff = 1.42246 426s ghost atom cutoff = 1.42246 426s binsize = 0.71123, bins = 37 32 1 426s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 426s (1) pair lj/cut, perpetual 426s attributes: half, newton on 426s pair build: half/bin/atomonly/newton 426s stencil: half/bin/2d 426s bin: standard 426s Setting up Verlet run ... 426s Unit style : lj 426s Current step : 0 426s Time step : 0.003 426s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 426s Step Temp E_pair E_mol TotEng Press Volume 426s 0 1 0 0 0.71190476 0.52314537 571.54286 426s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 426s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 426s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 426s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 426s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 426s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 426s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 426s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 426s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 426s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 426s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 426s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 426s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 426s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 426s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 426s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 426s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 426s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 426s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 426s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 426s Loop time of 0.304023 on 1 procs for 10000 steps with 420 atoms 426s 426s Performance: 8525683.487 tau/day, 32892.297 timesteps/s, 13.815 Matom-step/s 426s 97.2% CPU use with 1 MPI tasks x 1 OpenMP threads 426s 426s MPI task timing breakdown: 426s Section | min time | avg time | max time |%varavg| %total 426s --------------------------------------------------------------- 426s Pair | 0.15869 | 0.15869 | 0.15869 | 0.0 | 52.20 426s Neigh | 0.061859 | 0.061859 | 0.061859 | 0.0 | 20.35 426s Comm | 0.0063698 | 0.0063698 | 0.0063698 | 0.0 | 2.10 426s Output | 0.00024261 | 0.00024261 | 0.00024261 | 0.0 | 0.08 426s Modify | 0.062635 | 0.062635 | 0.062635 | 0.0 | 20.60 426s Other | | 0.01423 | | | 4.68 426s 426s Nlocal: 420 ave 420 max 420 min 426s Histogram: 1 0 0 0 0 0 0 0 0 0 426s Nghost: 50 ave 50 max 50 min 426s Histogram: 1 0 0 0 0 0 0 0 0 0 426s Neighs: 946 ave 946 max 946 min 426s Histogram: 1 0 0 0 0 0 0 0 0 0 426s 426s Total # of neighbors = 946 426s Ave neighs/atom = 2.252381 426s Neighbor list builds = 979 426s Dangerous builds = 0 426s Total wall time: 0:00:00 426s LAMMPS (7 Feb 2024 - Update 1) 426s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 426s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 426s using 1 OpenMP thread(s) per MPI task 426s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 426s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 426s 2 by 1 by 1 MPI processor grid 426s Created 420 atoms 426s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 426s create_atoms CPU = 0.001 seconds 426s 60 atoms in group lower 426s 60 atoms in group upper 426s 120 atoms in group boundary 426s 300 atoms in group flow 426s Setting atom values ... 426s 60 settings made for type 426s Setting atom values ... 426s 60 settings made for type 426s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 426s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 426s Neighbor list info ... 426s update: every = 1 steps, delay = 5 steps, check = yes 426s max neighbors/atom: 2000, page size: 100000 426s master list distance cutoff = 1.42246 426s ghost atom cutoff = 1.42246 426s binsize = 0.71123, bins = 37 32 1 426s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 426s (1) pair lj/cut, perpetual 426s attributes: half, newton on 426s pair build: half/bin/atomonly/newton 426s stencil: half/bin/2d 426s bin: standard 426s Setting up Verlet run ... 426s Unit style : lj 426s Current step : 0 426s Time step : 0.003 426s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 426s Step Temp E_pair E_mol TotEng Press Volume 426s 0 1 0 0 0.71190476 0.52314537 571.54286 426s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 426s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 426s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 426s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 426s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 426s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 426s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 426s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 426s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 427s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 427s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 427s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 427s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 427s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 427s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 427s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 427s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 427s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 427s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 427s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 427s Loop time of 0.595914 on 2 procs for 10000 steps with 420 atoms 427s 427s Performance: 4349622.207 tau/day, 16780.950 timesteps/s, 7.048 Matom-step/s 427s 38.1% CPU use with 2 MPI tasks x 1 OpenMP threads 427s 427s MPI task timing breakdown: 427s Section | min time | avg time | max time |%varavg| %total 427s --------------------------------------------------------------- 427s Pair | 0.091777 | 0.091915 | 0.092054 | 0.0 | 15.42 427s Neigh | 0.019154 | 0.019232 | 0.01931 | 0.1 | 3.23 427s Comm | 0.30135 | 0.30159 | 0.30184 | 0.0 | 50.61 427s Output | 0.001029 | 0.0019235 | 0.002818 | 2.0 | 0.32 427s Modify | 0.12225 | 0.12396 | 0.12567 | 0.5 | 20.80 427s Other | | 0.05729 | | | 9.61 427s 427s Nlocal: 210 ave 211 max 209 min 427s Histogram: 1 0 0 0 0 0 0 0 0 1 427s Nghost: 50 ave 51 max 49 min 427s Histogram: 1 0 0 0 0 0 0 0 0 1 427s Neighs: 563.5 ave 569 max 558 min 427s Histogram: 1 0 0 0 0 0 0 0 0 1 427s 427s Total # of neighbors = 1127 427s Ave neighs/atom = 2.6833333 427s Neighbor list builds = 560 427s Dangerous builds = 0 427s Total wall time: 0:00:00 427s LAMMPS (7 Feb 2024 - Update 1) 427s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 427s using 1 OpenMP thread(s) per MPI task 427s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 427s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 427s 1 by 1 by 1 MPI processor grid 427s Created 420 atoms 427s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 427s create_atoms CPU = 0.000 seconds 427s 60 atoms in group lower 427s 60 atoms in group upper 427s 120 atoms in group boundary 427s 300 atoms in group flow 427s Setting atom values ... 427s 60 settings made for type 427s Setting atom values ... 427s 60 settings made for type 427s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 427s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 427s Neighbor list info ... 427s update: every = 1 steps, delay = 5 steps, check = yes 427s max neighbors/atom: 2000, page size: 100000 427s master list distance cutoff = 1.42246 427s ghost atom cutoff = 1.42246 427s binsize = 0.71123, bins = 37 32 1 427s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 427s (1) pair lj/cut, perpetual 427s attributes: half, newton on 427s pair build: half/bin/atomonly/newton 427s stencil: half/bin/2d 427s bin: standard 427s Setting up Verlet run ... 427s Unit style : lj 427s Current step : 0 427s Time step : 0.003 427s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 427s Step Temp E_pair E_mol TotEng Press Volume 427s 0 1 0 0 0.71190476 0.52314537 571.54286 427s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 427s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 427s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 427s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 427s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 427s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 427s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 427s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 427s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 427s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 427s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 427s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 427s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 427s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 427s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 427s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 427s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 427s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 427s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 427s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 427s Loop time of 0.34261 on 1 procs for 10000 steps with 420 atoms 427s 427s Performance: 7565464.008 tau/day, 29187.747 timesteps/s, 12.259 Matom-step/s 427s 98.8% CPU use with 1 MPI tasks x 1 OpenMP threads 427s 427s MPI task timing breakdown: 427s Section | min time | avg time | max time |%varavg| %total 427s --------------------------------------------------------------- 427s Pair | 0.17765 | 0.17765 | 0.17765 | 0.0 | 51.85 427s Neigh | 0.035798 | 0.035798 | 0.035798 | 0.0 | 10.45 427s Comm | 0.0054945 | 0.0054945 | 0.0054945 | 0.0 | 1.60 427s Output | 0.00024721 | 0.00024721 | 0.00024721 | 0.0 | 0.07 427s Modify | 0.10958 | 0.10958 | 0.10958 | 0.0 | 31.98 427s Other | | 0.01384 | | | 4.04 427s 427s Nlocal: 420 ave 420 max 420 min 427s Histogram: 1 0 0 0 0 0 0 0 0 0 427s Nghost: 51 ave 51 max 51 min 427s Histogram: 1 0 0 0 0 0 0 0 0 0 427s Neighs: 1150 ave 1150 max 1150 min 427s Histogram: 1 0 0 0 0 0 0 0 0 0 427s 427s Total # of neighbors = 1150 427s Ave neighs/atom = 2.7380952 427s Neighbor list builds = 563 427s Dangerous builds = 0 427s Total wall time: 0:00:00 427s run: OK 428s autopkgtest [23:40:04]: test flow: -----------------------] 428s flow PASS 428s autopkgtest [23:40:04]: test flow: - - - - - - - - - - results - - - - - - - - - - 428s autopkgtest [23:40:04]: test friction: preparing testbed 430s Reading package lists... 430s Building dependency tree... 430s Reading state information... 430s Starting pkgProblemResolver with broken count: 0 430s Starting 2 pkgProblemResolver with broken count: 0 430s Done 431s The following NEW packages will be installed: 431s autopkgtest-satdep 431s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 431s Need to get 0 B/704 B of archives. 431s After this operation, 0 B of additional disk space will be used. 431s Get:1 /tmp/autopkgtest.E26P9T/5-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 431s Selecting previously unselected package autopkgtest-satdep. 431s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55757 files and directories currently installed.) 431s Preparing to unpack .../5-autopkgtest-satdep.deb ... 431s Unpacking autopkgtest-satdep (0) ... 431s Setting up autopkgtest-satdep (0) ... 432s (Reading database ... 55757 files and directories currently installed.) 432s Removing autopkgtest-satdep (0) ... 433s autopkgtest [23:40:09]: test friction: [----------------------- 433s LAMMPS (7 Feb 2024 - Update 1) 433s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 433s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 433s using 1 OpenMP thread(s) per MPI task 433s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 433s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 433s 2 by 1 by 1 MPI processor grid 433s Created 750 atoms 433s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 433s create_atoms CPU = 0.001 seconds 433s Created 750 atoms 433s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 433s create_atoms CPU = 0.000 seconds 433s Created 112 atoms 433s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 433s create_atoms CPU = 0.001 seconds 433s Created 112 atoms 433s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 433s create_atoms CPU = 0.001 seconds 433s 750 atoms in group lo 433s 862 atoms in group lo 433s 750 atoms in group hi 433s 862 atoms in group hi 433s 150 atoms in group lo-fixed 433s 150 atoms in group hi-fixed 433s 300 atoms in group boundary 433s 1424 atoms in group mobile 433s Setting atom values ... 433s 150 settings made for type 433s Setting atom values ... 433s 150 settings made for type 433s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 433s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 433s Neighbor list info ... 433s update: every = 1 steps, delay = 5 steps, check = yes 433s max neighbors/atom: 2000, page size: 100000 433s master list distance cutoff = 2.8 433s ghost atom cutoff = 2.8 433s binsize = 1.4, bins = 41 31 1 433s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 433s (1) pair lj/cut, perpetual 433s attributes: half, newton on 433s pair build: half/bin/atomonly/newton 433s stencil: half/bin/2d 433s bin: standard 433s Setting up Verlet run ... 433s Unit style : lj 433s Current step : 0 433s Time step : 0.0025 433s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 433s Step Temp E_pair E_mol TotEng Press Volume 433s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 434s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 434s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 435s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 435s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 436s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 437s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 437s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 438s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 438s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 439s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 440s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 440s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 441s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 441s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 442s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 442s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 443s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 443s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 444s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 444s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 444s Loop time of 11.0852 on 2 procs for 20000 steps with 1724 atoms 444s 444s Performance: 389709.566 tau/day, 1804.211 timesteps/s, 3.110 Matom-step/s 444s 45.8% CPU use with 2 MPI tasks x 1 OpenMP threads 444s 444s MPI task timing breakdown: 444s Section | min time | avg time | max time |%varavg| %total 444s --------------------------------------------------------------- 444s Pair | 4.1167 | 4.4187 | 4.7206 | 14.4 | 39.86 444s Neigh | 0.18811 | 0.20433 | 0.22055 | 3.6 | 1.84 444s Comm | 5.5828 | 5.9283 | 6.2737 | 14.2 | 53.48 444s Output | 0.0019178 | 0.0039981 | 0.0060783 | 3.3 | 0.04 444s Modify | 0.23237 | 0.25793 | 0.28348 | 5.0 | 2.33 444s Other | | 0.272 | | | 2.45 444s 444s Nlocal: 862 ave 874 max 850 min 444s Histogram: 1 0 0 0 0 0 0 0 0 1 444s Nghost: 165.5 ave 166 max 165 min 444s Histogram: 1 0 0 0 0 0 0 0 0 1 444s Neighs: 7198 ave 7283 max 7113 min 444s Histogram: 1 0 0 0 0 0 0 0 0 1 444s 444s Total # of neighbors = 14396 444s Ave neighs/atom = 8.350348 444s Neighbor list builds = 720 444s Dangerous builds = 0 444s Total wall time: 0:00:11 445s LAMMPS (7 Feb 2024 - Update 1) 454s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 454s using 1 OpenMP thread(s) per MPI task 454s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 454s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 454s 1 by 1 by 1 MPI processor grid 454s Created 750 atoms 454s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 454s create_atoms CPU = 0.001 seconds 454s Created 750 atoms 454s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 454s create_atoms CPU = 0.000 seconds 454s Created 112 atoms 454s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 454s create_atoms CPU = 0.000 seconds 454s Created 112 atoms 454s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 454s create_atoms CPU = 0.000 seconds 454s 750 atoms in group lo 454s 862 atoms in group lo 454s 750 atoms in group hi 454s 862 atoms in group hi 454s 150 atoms in group lo-fixed 454s 150 atoms in group hi-fixed 454s 300 atoms in group boundary 454s 1424 atoms in group mobile 454s Setting atom values ... 454s 150 settings made for type 454s Setting atom values ... 454s 150 settings made for type 454s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 454s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 454s Neighbor list info ... 454s update: every = 1 steps, delay = 5 steps, check = yes 454s max neighbors/atom: 2000, page size: 100000 454s master list distance cutoff = 2.8 454s ghost atom cutoff = 2.8 454s binsize = 1.4, bins = 41 31 1 454s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 454s (1) pair lj/cut, perpetual 454s attributes: half, newton on 454s pair build: half/bin/atomonly/newton 454s stencil: half/bin/2d 454s bin: standard 454s Setting up Verlet run ... 454s Unit style : lj 454s Current step : 0 454s Time step : 0.0025 454s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 454s Step Temp E_pair E_mol TotEng Press Volume 454s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 454s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 454s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 454s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 454s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 454s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 454s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 454s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 454s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 454s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 454s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 454s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 454s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 454s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 454s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 454s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 454s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 454s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 454s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 455s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 455s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 455s Loop time of 9.9328 on 1 procs for 20000 steps with 1724 atoms 455s 455s Performance: 434922.708 tau/day, 2013.531 timesteps/s, 3.471 Matom-step/s 455s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 455s 455s MPI task timing breakdown: 455s Section | min time | avg time | max time |%varavg| %total 455s --------------------------------------------------------------- 455s Pair | 8.8762 | 8.8762 | 8.8762 | 0.0 | 89.36 455s Neigh | 0.4132 | 0.4132 | 0.4132 | 0.0 | 4.16 455s Comm | 0.031424 | 0.031424 | 0.031424 | 0.0 | 0.32 455s Output | 0.0012298 | 0.0012298 | 0.0012298 | 0.0 | 0.01 455s Modify | 0.48682 | 0.48682 | 0.48682 | 0.0 | 4.90 455s Other | | 0.1239 | | | 1.25 455s 455s Nlocal: 1724 ave 1724 max 1724 min 455s Histogram: 1 0 0 0 0 0 0 0 0 0 455s Nghost: 145 ave 145 max 145 min 455s Histogram: 1 0 0 0 0 0 0 0 0 0 455s Neighs: 14397 ave 14397 max 14397 min 455s Histogram: 1 0 0 0 0 0 0 0 0 0 455s 455s Total # of neighbors = 14397 455s Ave neighs/atom = 8.3509281 455s Neighbor list builds = 723 455s Dangerous builds = 0 455s Total wall time: 0:00:09 455s run: OK 455s autopkgtest [23:40:31]: test friction: -----------------------] 455s friction PASS 455s autopkgtest [23:40:31]: test friction: - - - - - - - - - - results - - - - - - - - - - 456s autopkgtest [23:40:32]: test hugo: preparing testbed 457s Reading package lists... 457s Building dependency tree... 457s Reading state information... 457s Starting pkgProblemResolver with broken count: 0 457s Starting 2 pkgProblemResolver with broken count: 0 457s Done 457s The following NEW packages will be installed: 457s autopkgtest-satdep 457s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 457s Need to get 0 B/704 B of archives. 457s After this operation, 0 B of additional disk space will be used. 457s Get:1 /tmp/autopkgtest.E26P9T/6-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 458s Selecting previously unselected package autopkgtest-satdep. 458s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55757 files and directories currently installed.) 458s Preparing to unpack .../6-autopkgtest-satdep.deb ... 458s Unpacking autopkgtest-satdep (0) ... 458s Setting up autopkgtest-satdep (0) ... 459s (Reading database ... 55757 files and directories currently installed.) 459s Removing autopkgtest-satdep (0) ... 460s autopkgtest [23:40:36]: test hugo: [----------------------- 460s LAMMPS (7 Feb 2024 - Update 1) 460s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 460s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 460s using 1 OpenMP thread(s) per MPI task 460s Lattice spacing in x,y,z = 1.4142135 2 2 460s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 460s 1 by 1 by 2 MPI processor grid 460s Created 1000 atoms 460s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 460s create_atoms CPU = 0.001 seconds 460s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 460s Neighbor list info ... 460s update: every = 1 steps, delay = 0 steps, check = yes 460s max neighbors/atom: 2000, page size: 100000 460s master list distance cutoff = 1.8475372 460s ghost atom cutoff = 1.8475372 460s binsize = 0.92376862, bins = 8 11 11 460s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 460s (1) pair lj/cubic, perpetual 460s attributes: half, newton on 460s pair build: half/bin/atomonly/newton 460s stencil: half/bin/3d 460s bin: standard 460s Setting up cg style minimization ... 460s Unit style : lj 460s Current step : 0 460s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 460s (src/min.cpp:219) 460s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 460s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 460s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 460s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 460s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 460s Loop time of 0.113475 on 2 procs for 134 steps with 1000 atoms 460s 460s 44.8% CPU use with 2 MPI tasks x 1 OpenMP threads 460s 460s Minimization stats: 460s Stopping criterion = force tolerance 460s Energy initial, next-to-last, final = 460s -6.29375358358574 -6.33442531515467 -6.33442531515467 460s Force two-norm initial, final = 3395.2895 5.526433e-10 460s Force max component initial, final = 1960.2713 3.2059964e-10 460s Final line search alpha, max atom move = 1 3.2059964e-10 460s Iterations, force evaluations = 134 137 460s 460s MPI task timing breakdown: 460s Section | min time | avg time | max time |%varavg| %total 460s --------------------------------------------------------------- 460s Pair | 0.035806 | 0.039232 | 0.042659 | 1.7 | 34.57 460s Neigh | 0.00056286 | 0.00060512 | 0.00064738 | 0.0 | 0.53 460s Comm | 0.049615 | 0.05303 | 0.056444 | 1.5 | 46.73 460s Output | 0.00016342 | 0.00016785 | 0.00017229 | 0.0 | 0.15 460s Modify | 0 | 0 | 0 | 0.0 | 0.00 460s Other | | 0.02044 | | | 18.01 460s 460s Nlocal: 500 ave 550 max 450 min 460s Histogram: 1 0 0 0 0 0 0 0 0 1 460s Nghost: 1214 ave 1264 max 1164 min 460s Histogram: 1 0 0 0 0 0 0 0 0 1 460s Neighs: 10500 ave 11550 max 9450 min 460s Histogram: 1 0 0 0 0 0 0 0 0 1 460s 460s Total # of neighbors = 21000 460s Ave neighs/atom = 21 460s Neighbor list builds = 1 460s Dangerous builds = 0 460s System init for write_restart ... 460s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 460s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 460s using 1 OpenMP thread(s) per MPI task 460s Reading restart file ... 460s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 460s restoring atom style atomic from restart 460s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 460s 1 by 1 by 2 MPI processor grid 460s restoring pair style lj/cubic from restart 460s 1000 atoms 460s read_restart CPU = 0.001 seconds 460s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 460s Neighbor list info ... 460s update: every = 1 steps, delay = 0 steps, check = yes 460s max neighbors/atom: 2000, page size: 100000 460s master list distance cutoff = 1.7475372 460s ghost atom cutoff = 1.7475372 460s binsize = 0.87376862, bins = 8 12 12 460s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 460s (1) pair lj/cubic, perpetual 460s attributes: half, newton on 460s pair build: half/bin/atomonly/newton 460s stencil: half/bin/3d 460s bin: standard 460s Setting up Verlet run ... 460s Unit style : lj 460s Current step : 0 460s Time step : 0.001 460s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 460s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 460s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 461s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 462s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 463s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 464s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 465s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 466s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 466s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 467s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 468s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 469s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 469s Loop time of 8.668 on 2 procs for 10000 steps with 1000 atoms 469s 469s Performance: 99677.026 tau/day, 1153.669 timesteps/s, 1.154 Matom-step/s 469s 46.6% CPU use with 2 MPI tasks x 1 OpenMP threads 469s 469s MPI task timing breakdown: 469s Section | min time | avg time | max time |%varavg| %total 469s --------------------------------------------------------------- 469s Pair | 3.2638 | 3.2748 | 3.2857 | 0.6 | 37.78 469s Neigh | 0.1165 | 0.11938 | 0.12226 | 0.8 | 1.38 469s Comm | 4.1358 | 4.144 | 4.1523 | 0.4 | 47.81 469s Output | 0.0018622 | 0.0028731 | 0.0038839 | 1.9 | 0.03 469s Modify | 0.96445 | 0.96605 | 0.96765 | 0.2 | 11.15 469s Other | | 0.1609 | | | 1.86 469s 469s Nlocal: 500 ave 509 max 491 min 469s Histogram: 1 0 0 0 0 0 0 0 0 1 469s Nghost: 1346.5 ave 1369 max 1324 min 469s Histogram: 1 0 0 0 0 0 0 0 0 1 469s Neighs: 10311.5 ave 10391 max 10232 min 469s Histogram: 1 0 0 0 0 0 0 0 0 1 469s 469s Total # of neighbors = 20623 469s Ave neighs/atom = 20.623 469s Neighbor list builds = 205 469s Dangerous builds = 0 469s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 469s using 1 OpenMP thread(s) per MPI task 469s Reading restart file ... 469s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 469s restoring atom style atomic from restart 469s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 469s 1 by 1 by 2 MPI processor grid 469s restoring pair style lj/cubic from restart 469s 1000 atoms 469s read_restart CPU = 0.001 seconds 469s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 469s Neighbor list info ... 469s update: every = 1 steps, delay = 0 steps, check = yes 469s max neighbors/atom: 2000, page size: 100000 469s master list distance cutoff = 1.7475372 469s ghost atom cutoff = 1.7475372 469s binsize = 0.87376862, bins = 8 12 12 469s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 469s (1) pair lj/cubic, perpetual 469s attributes: half, newton on 469s pair build: half/bin/atomonly/newton 469s stencil: half/bin/3d 469s bin: standard 469s Setting up Verlet run ... 469s Unit style : lj 469s Current step : 0 469s Time step : 0.001 469s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 469s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 469s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 470s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 471s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 471s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 472s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 473s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 474s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 474s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 475s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 476s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 477s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 477s Loop time of 7.65403 on 2 procs for 10000 steps with 1000 atoms 477s 477s Performance: 112881.711 tau/day, 1306.501 timesteps/s, 1.307 Matom-step/s 477s 46.2% CPU use with 2 MPI tasks x 1 OpenMP threads 477s 477s MPI task timing breakdown: 477s Section | min time | avg time | max time |%varavg| %total 477s --------------------------------------------------------------- 477s Pair | 2.8439 | 2.8795 | 2.9151 | 2.1 | 37.62 477s Neigh | 0.0056913 | 0.0057055 | 0.0057196 | 0.0 | 0.07 477s Comm | 3.5208 | 3.5669 | 3.6131 | 2.4 | 46.60 477s Output | 0.0012901 | 0.0020613 | 0.0028324 | 1.7 | 0.03 477s Modify | 1.0149 | 1.0247 | 1.0345 | 1.0 | 13.39 477s Other | | 0.1751 | | | 2.29 477s 477s Nlocal: 500 ave 508 max 492 min 477s Histogram: 1 0 0 0 0 0 0 0 0 1 477s Nghost: 1214 ave 1222 max 1206 min 477s Histogram: 1 0 0 0 0 0 0 0 0 1 477s Neighs: 10500 ave 10668 max 10332 min 477s Histogram: 1 0 0 0 0 0 0 0 0 1 477s 477s Total # of neighbors = 21000 477s Ave neighs/atom = 21 477s Neighbor list builds = 10 477s Dangerous builds = 0 477s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 477s using 1 OpenMP thread(s) per MPI task 477s Reading restart file ... 477s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 477s restoring atom style atomic from restart 477s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 477s 1 by 1 by 2 MPI processor grid 477s restoring pair style lj/cubic from restart 477s 1000 atoms 477s read_restart CPU = 0.001 seconds 477s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 477s Neighbor list info ... 477s update: every = 1 steps, delay = 0 steps, check = yes 477s max neighbors/atom: 2000, page size: 100000 477s master list distance cutoff = 1.7475372 477s ghost atom cutoff = 1.7475372 477s binsize = 0.87376862, bins = 8 12 12 477s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 477s (1) pair lj/cubic, perpetual 477s attributes: half, newton on 477s pair build: half/bin/atomonly/newton 477s stencil: half/bin/3d 477s bin: standard 477s Setting up Verlet run ... 477s Unit style : lj 477s Current step : 0 477s Time step : 0.001 477s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 477s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 477s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 477s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 478s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 479s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 480s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 481s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 481s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 482s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 483s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 484s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 484s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 484s Loop time of 7.77396 on 2 procs for 10000 steps with 1000 atoms 484s 484s Performance: 111140.231 tau/day, 1286.345 timesteps/s, 1.286 Matom-step/s 484s 46.8% CPU use with 2 MPI tasks x 1 OpenMP threads 484s 484s MPI task timing breakdown: 484s Section | min time | avg time | max time |%varavg| %total 484s --------------------------------------------------------------- 484s Pair | 2.9091 | 2.913 | 2.9169 | 0.2 | 37.47 484s Neigh | 0.05476 | 0.054939 | 0.055118 | 0.1 | 0.71 484s Comm | 3.6052 | 3.6112 | 3.6172 | 0.3 | 46.45 484s Output | 0.0016346 | 0.0020426 | 0.0024506 | 0.9 | 0.03 484s Modify | 1.0138 | 1.0275 | 1.0412 | 1.4 | 13.22 484s Other | | 0.1653 | | | 2.13 484s 484s Nlocal: 500 ave 510 max 490 min 484s Histogram: 1 0 0 0 0 0 0 0 0 1 484s Nghost: 1216.5 ave 1227 max 1206 min 484s Histogram: 1 0 0 0 0 0 0 0 0 1 484s Neighs: 10311 ave 10520 max 10102 min 484s Histogram: 1 0 0 0 0 0 0 0 0 1 484s 484s Total # of neighbors = 20622 484s Ave neighs/atom = 20.622 484s Neighbor list builds = 95 484s Dangerous builds = 0 484s Total wall time: 0:00:24 485s LAMMPS (7 Feb 2024 - Update 1) 485s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 485s using 1 OpenMP thread(s) per MPI task 485s Lattice spacing in x,y,z = 1.4142135 2 2 485s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 485s 1 by 1 by 1 MPI processor grid 485s Created 1000 atoms 485s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 485s create_atoms CPU = 0.001 seconds 485s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 485s Neighbor list info ... 485s update: every = 1 steps, delay = 0 steps, check = yes 485s max neighbors/atom: 2000, page size: 100000 485s master list distance cutoff = 1.8475372 485s ghost atom cutoff = 1.8475372 485s binsize = 0.92376862, bins = 8 11 11 485s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 485s (1) pair lj/cubic, perpetual 485s attributes: half, newton on 485s pair build: half/bin/atomonly/newton 485s stencil: half/bin/3d 485s bin: standard 485s Setting up cg style minimization ... 485s Unit style : lj 485s Current step : 0 485s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 485s (src/min.cpp:219) 485s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 485s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 485s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 485s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 485s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 485s Loop time of 0.0958961 on 1 procs for 134 steps with 1000 atoms 485s 485s 92.5% CPU use with 1 MPI tasks x 1 OpenMP threads 485s 485s Minimization stats: 485s Stopping criterion = force tolerance 485s Energy initial, next-to-last, final = 485s -6.29375358358556 -6.33442531515503 -6.33442531515503 485s Force two-norm initial, final = 3395.2895 5.6047601e-10 485s Force max component initial, final = 1960.2713 3.2666928e-10 485s Final line search alpha, max atom move = 1 3.2666928e-10 485s Iterations, force evaluations = 134 137 485s 485s MPI task timing breakdown: 485s Section | min time | avg time | max time |%varavg| %total 485s --------------------------------------------------------------- 485s Pair | 0.078615 | 0.078615 | 0.078615 | 0.0 | 81.98 485s Neigh | 0.0012294 | 0.0012294 | 0.0012294 | 0.0 | 1.28 485s Comm | 0.0013589 | 0.0013589 | 0.0013589 | 0.0 | 1.42 485s Output | 2.3739e-05 | 2.3739e-05 | 2.3739e-05 | 0.0 | 0.02 485s Modify | 0 | 0 | 0 | 0.0 | 0.00 485s Other | | 0.01467 | | | 15.30 485s 485s Nlocal: 1000 ave 1000 max 1000 min 485s Histogram: 1 0 0 0 0 0 0 0 0 0 485s Nghost: 1724 ave 1724 max 1724 min 485s Histogram: 1 0 0 0 0 0 0 0 0 0 485s Neighs: 21000 ave 21000 max 21000 min 485s Histogram: 1 0 0 0 0 0 0 0 0 0 485s 485s Total # of neighbors = 21000 485s Ave neighs/atom = 21 485s Neighbor list builds = 1 485s Dangerous builds = 0 485s System init for write_restart ... 485s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 485s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 485s using 1 OpenMP thread(s) per MPI task 485s Reading restart file ... 485s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 485s restoring atom style atomic from restart 485s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 485s 1 by 1 by 1 MPI processor grid 485s restoring pair style lj/cubic from restart 485s 1000 atoms 485s read_restart CPU = 0.000 seconds 485s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 485s Neighbor list info ... 485s update: every = 1 steps, delay = 0 steps, check = yes 485s max neighbors/atom: 2000, page size: 100000 485s master list distance cutoff = 1.7475372 485s ghost atom cutoff = 1.7475372 485s binsize = 0.87376862, bins = 8 12 12 485s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 493s (1) pair lj/cubic, perpetual 493s attributes: half, newton on 493s pair build: half/bin/atomonly/newton 493s stencil: half/bin/3d 493s bin: standard 493s Setting up Verlet run ... 493s Unit style : lj 493s Current step : 0 493s Time step : 0.001 493s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 493s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 493s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 493s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 493s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 493s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 493s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 493s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 493s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 493s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 493s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 493s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 493s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 493s Loop time of 7.84895 on 1 procs for 10000 steps with 1000 atoms 493s 493s Performance: 110078.450 tau/day, 1274.056 timesteps/s, 1.274 Matom-step/s 493s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 493s 493s MPI task timing breakdown: 493s Section | min time | avg time | max time |%varavg| %total 493s --------------------------------------------------------------- 493s Pair | 6.6682 | 6.6682 | 6.6682 | 0.0 | 84.96 493s Neigh | 0.21509 | 0.21509 | 0.21509 | 0.0 | 2.74 493s Comm | 0.10808 | 0.10808 | 0.10808 | 0.0 | 1.38 493s Output | 0.00065182 | 0.00065182 | 0.00065182 | 0.0 | 0.01 493s Modify | 0.80441 | 0.80441 | 0.80441 | 0.0 | 10.25 493s Other | | 0.05251 | | | 0.67 493s 493s Nlocal: 1000 ave 1000 max 1000 min 493s Histogram: 1 0 0 0 0 0 0 0 0 0 493s Nghost: 1886 ave 1886 max 1886 min 493s Histogram: 1 0 0 0 0 0 0 0 0 0 493s Neighs: 20874 ave 20874 max 20874 min 493s Histogram: 1 0 0 0 0 0 0 0 0 0 493s 493s Total # of neighbors = 20874 493s Ave neighs/atom = 20.874 493s Neighbor list builds = 188 493s Dangerous builds = 0 493s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 493s using 1 OpenMP thread(s) per MPI task 493s Reading restart file ... 493s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 493s restoring atom style atomic from restart 493s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 493s 1 by 1 by 1 MPI processor grid 493s restoring pair style lj/cubic from restart 493s 1000 atoms 493s read_restart CPU = 0.000 seconds 493s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 493s Neighbor list info ... 499s update: every = 1 steps, delay = 0 steps, check = yes 499s max neighbors/atom: 2000, page size: 100000 499s master list distance cutoff = 1.7475372 499s ghost atom cutoff = 1.7475372 499s binsize = 0.87376862, bins = 8 12 12 499s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 499s (1) pair lj/cubic, perpetual 499s attributes: half, newton on 499s pair build: half/bin/atomonly/newton 499s stencil: half/bin/3d 499s bin: standard 499s Setting up Verlet run ... 499s Unit style : lj 499s Current step : 0 499s Time step : 0.001 499s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 499s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 499s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 499s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 499s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 499s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 499s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 499s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 499s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 499s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 499s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 499s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 499s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 499s Loop time of 6.65853 on 1 procs for 10000 steps with 1000 atoms 499s 499s Performance: 129758.427 tau/day, 1501.834 timesteps/s, 1.502 Matom-step/s 499s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 499s 499s MPI task timing breakdown: 499s Section | min time | avg time | max time |%varavg| %total 499s --------------------------------------------------------------- 499s Pair | 5.726 | 5.726 | 5.726 | 0.0 | 85.99 499s Neigh | 0.012496 | 0.012496 | 0.012496 | 0.0 | 0.19 499s Comm | 0.092462 | 0.092462 | 0.092462 | 0.0 | 1.39 499s Output | 0.00066386 | 0.00066386 | 0.00066386 | 0.0 | 0.01 499s Modify | 0.78016 | 0.78016 | 0.78016 | 0.0 | 11.72 499s Other | | 0.04678 | | | 0.70 499s 499s Nlocal: 1000 ave 1000 max 1000 min 499s Histogram: 1 0 0 0 0 0 0 0 0 0 499s Nghost: 1724 ave 1724 max 1724 min 499s Histogram: 1 0 0 0 0 0 0 0 0 0 499s Neighs: 21000 ave 21000 max 21000 min 499s Histogram: 1 0 0 0 0 0 0 0 0 0 499s 499s Total # of neighbors = 21000 499s Ave neighs/atom = 21 499s Neighbor list builds = 11 499s Dangerous builds = 0 499s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 499s using 1 OpenMP thread(s) per MPI task 499s Reading restart file ... 499s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 499s restoring atom style atomic from restart 506s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 506s 1 by 1 by 1 MPI processor grid 506s restoring pair style lj/cubic from restart 506s 1000 atoms 506s read_restart CPU = 0.001 seconds 506s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 506s Neighbor list info ... 506s update: every = 1 steps, delay = 0 steps, check = yes 506s max neighbors/atom: 2000, page size: 100000 506s master list distance cutoff = 1.7475372 506s ghost atom cutoff = 1.7475372 506s binsize = 0.87376862, bins = 8 12 12 506s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 506s (1) pair lj/cubic, perpetual 506s attributes: half, newton on 506s pair build: half/bin/atomonly/newton 506s stencil: half/bin/3d 506s bin: standard 506s Setting up Verlet run ... 506s Unit style : lj 506s Current step : 0 506s Time step : 0.001 506s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 506s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 506s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 506s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 506s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 506s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 506s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 506s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 506s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 506s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 506s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 506s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 506s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 506s Loop time of 6.82985 on 1 procs for 10000 steps with 1000 atoms 506s 506s Performance: 126503.602 tau/day, 1464.162 timesteps/s, 1.464 Matom-step/s 506s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 506s 506s MPI task timing breakdown: 506s Section | min time | avg time | max time |%varavg| %total 506s --------------------------------------------------------------- 506s Pair | 5.7813 | 5.7813 | 5.7813 | 0.0 | 84.65 506s Neigh | 0.10782 | 0.10782 | 0.10782 | 0.0 | 1.58 506s Comm | 0.096739 | 0.096739 | 0.096739 | 0.0 | 1.42 506s Output | 0.00066534 | 0.00066534 | 0.00066534 | 0.0 | 0.01 506s Modify | 0.79373 | 0.79373 | 0.79373 | 0.0 | 11.62 506s Other | | 0.04955 | | | 0.73 506s 506s Nlocal: 1000 ave 1000 max 1000 min 506s Histogram: 1 0 0 0 0 0 0 0 0 0 506s Nghost: 1724 ave 1724 max 1724 min 506s Histogram: 1 0 0 0 0 0 0 0 0 0 506s Neighs: 20654 ave 20654 max 20654 min 506s Histogram: 1 0 0 0 0 0 0 0 0 0 506s 506s Total # of neighbors = 20654 506s Ave neighs/atom = 20.654 506s Neighbor list builds = 94 506s Dangerous builds = 0 506s Total wall time: 0:00:21 506s run: OK 506s autopkgtest [23:41:22]: test hugo: -----------------------] 507s autopkgtest [23:41:23]: test hugo: - - - - - - - - - - results - - - - - - - - - - 507s hugo PASS 507s autopkgtest [23:41:23]: test command1: preparing testbed 739s autopkgtest [23:45:15]: testbed dpkg architecture: s390x 739s autopkgtest [23:45:15]: testbed apt version: 2.7.12 739s autopkgtest [23:45:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 740s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 740s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 740s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [482 kB] 740s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3710 kB] 741s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 741s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [638 kB] 741s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 741s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 741s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 741s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3780 kB] 741s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 741s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [34.5 kB] 741s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 744s Fetched 8831 kB in 3s (2920 kB/s) 744s Reading package lists... 747s Reading package lists... 747s Building dependency tree... 747s Reading state information... 747s Calculating upgrade... 747s The following packages will be REMOVED: 747s libssl3 747s The following NEW packages will be installed: 747s libssl3t64 747s The following packages have been kept back: 747s curl 747s The following packages will be upgraded: 747s openssl 747s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 747s Need to get 2658 kB of archives. 747s After this operation, 23.6 kB of additional disk space will be used. 747s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu1 [1006 kB] 748s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu1 [1652 kB] 749s Fetched 2658 kB in 1s (2606 kB/s) 749s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 749s Preparing to unpack .../openssl_3.0.13-0ubuntu1_s390x.deb ... 749s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 749s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 749s wget depends on libssl3 (>= 3.0.0). 749s tnftp depends on libssl3 (>= 3.0.0). 749s tcpdump depends on libssl3 (>= 3.0.0). 749s systemd-resolved depends on libssl3 (>= 3.0.0). 749s systemd depends on libssl3 (>= 3.0.0). 749s sudo depends on libssl3 (>= 3.0.0). 749s s390-tools depends on libssl3 (>= 3.0.0). 749s rsync depends on libssl3 (>= 3.0.0). 749s python3-cryptography depends on libssl3 (>= 3.0.0). 749s openssh-server depends on libssl3 (>= 3.0.10). 749s openssh-client depends on libssl3 (>= 3.0.10). 749s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 749s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 749s libssh-4:s390x depends on libssl3 (>= 3.0.0). 749s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 749s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 749s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 749s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 749s libnvme1 depends on libssl3 (>= 3.0.0). 749s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 749s libkmod2:s390x depends on libssl3 (>= 3.0.0). 749s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 749s libcurl4:s390x depends on libssl3 (>= 3.0.0). 749s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 749s kmod depends on libssl3 (>= 3.0.0). 749s dhcpcd-base depends on libssl3 (>= 3.0.0). 749s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 749s 749s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 749s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 749s Selecting previously unselected package libssl3t64:s390x. 749s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52160 files and directories currently installed.) 749s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_s390x.deb ... 749s Unpacking libssl3t64:s390x (3.0.13-0ubuntu1) ... 749s Setting up libssl3t64:s390x (3.0.13-0ubuntu1) ... 749s Setting up openssl (3.0.13-0ubuntu1) ... 749s Processing triggers for man-db (2.12.0-3) ... 750s Processing triggers for libc-bin (2.39-0ubuntu2) ... 750s Reading package lists... 750s Building dependency tree... 750s Reading state information... 751s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 751s Unknown architecture, assuming PC-style ttyS0 751s sh: Attempting to set up Debian/Ubuntu apt sources automatically 751s sh: Distribution appears to be Ubuntu 752s Reading package lists... 753s Building dependency tree... 753s Reading state information... 753s eatmydata is already the newest version (131-1). 753s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 753s Reading package lists... 753s Building dependency tree... 753s Reading state information... 753s dbus is already the newest version (1.14.10-4ubuntu1). 753s dbus set to manually installed. 753s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 753s Reading package lists... 754s Building dependency tree... 754s Reading state information... 754s rng-tools-debian is already the newest version (2.4). 754s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 754s Reading package lists... 754s Building dependency tree... 754s Reading state information... 754s The following packages will be REMOVED: 754s cloud-init* python3-configobj* python3-debconf* 755s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 755s After this operation, 3252 kB disk space will be freed. 755s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52173 files and directories currently installed.) 755s Removing cloud-init (24.1.1-0ubuntu1) ... 755s Removing python3-configobj (5.0.8-3) ... 755s Removing python3-debconf (1.5.86) ... 755s Processing triggers for man-db (2.12.0-3) ... 756s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51784 files and directories currently installed.) 756s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 756s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 756s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 756s invoke-rc.d: policy-rc.d denied execution of try-restart. 757s Reading package lists... 757s Building dependency tree... 757s Reading state information... 757s linux-generic is already the newest version (6.8.0-11.11+1). 757s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 758s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 758s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 758s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 761s Reading package lists... 761s Reading package lists... 761s Building dependency tree... 761s Reading state information... 761s Calculating upgrade... 761s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 762s Reading package lists... 762s Building dependency tree... 762s Reading state information... 762s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 762s autopkgtest [23:45:38]: rebooting testbed after setup commands that affected boot 782s Reading package lists... 783s Building dependency tree... 783s Reading state information... 783s Starting pkgProblemResolver with broken count: 0 783s Starting 2 pkgProblemResolver with broken count: 0 783s Done 783s The following additional packages will be installed: 783s autoconf automake autotools-dev cpp-12 fontconfig-config fonts-dejavu-core 783s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 libasan8 libatomic1 783s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdeflate0 783s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 783s libevent-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 783s libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfontconfig1 783s libfreetype6 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 783s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 783s libglx0 libgomp1 libhdf5-103-1 libhdf5-hl-100 libhwloc-dev libhwloc-plugins 783s libhwloc15 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 783s libjs-jquery libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev 783s liblammps0 liblapack3 libllvm17 libltdl-dev libltdl7 libmpc3 libmunge2 783s libnetcdf19 libnl-3-dev libnl-route-3-dev libnsl-dev libnuma-dev libogg0 783s libopengl0 libopenmpi-dev libopenmpi3 libpciaccess0 libpixman-1-0 783s libpmix-dev libpmix2 libpnetcdf0d libproj25 libpython3.12 librdmacm1 783s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 783s libtheora0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libvoro++1 libvtk9.1 783s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 783s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 783s libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 783s libxss1 libxxf86vm1 linux-libc-dev m4 mpi-default-bin mpi-default-dev 783s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 783s rpcsvc-proto x11-common zlib1g-dev 783s Suggested packages: 783s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-12-locales 783s cpp-12-doc gcc-12-multilib gcc-12-doc gfortran-12-multilib gfortran-12-doc 783s libcoarrays-dev glibc-doc manpages-dev libfftw3-bin libfftw3-dev glew-utils 783s libjs-jquery-ui-docs libtool-doc openmpi-doc proj-bin tcl8.6 tk8.6 vtk9-doc 783s vtk9-examples m4-doc opencl-icd gfortran | fortran-compiler 783s Recommended packages: 783s manpages manpages-dev libc-devtools libgl1-amber-dri javascript-common 783s lammps-doc libtool libcoarrays-openmpi-dev mesa-vulkan-drivers | vulkan-icd 783s python3-mpi4py 783s The following NEW packages will be installed: 783s autoconf automake autopkgtest-satdep autotools-dev cpp-12 fontconfig-config 783s fonts-dejavu-core fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 783s libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 783s libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 783s libdrm-nouveau2 libdrm-radeon1 libevent-2.1-7 libevent-dev 783s libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 783s libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgcc-12-dev 783s libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 783s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 783s libhdf5-103-1 libhdf5-hl-100 libhwloc-dev libhwloc-plugins libhwloc15 783s libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 783s libjs-jquery libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev 783s liblammps0 liblapack3 libllvm17 libltdl-dev libltdl7 libmpc3 libmunge2 783s libnetcdf19 libnl-3-dev libnl-route-3-dev libnsl-dev libnuma-dev libogg0 783s libopengl0 libopenmpi-dev libopenmpi3 libpciaccess0 libpixman-1-0 783s libpmix-dev libpmix2 libpnetcdf0d libproj25 libpython3.12 librdmacm1 783s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 783s libtheora0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libvoro++1 libvtk9.1 783s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 783s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 783s libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 783s libxss1 libxxf86vm1 linux-libc-dev m4 mpi-default-bin mpi-default-dev 783s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 783s rpcsvc-proto x11-common zlib1g-dev 783s 0 upgraded, 130 newly installed, 0 to remove and 0 not upgraded. 783s Need to get 154 MB/154 MB of archives. 783s After this operation, 620 MB of additional disk space will be used. 783s Get:1 /tmp/autopkgtest.E26P9T/7-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [712 B] 783s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x m4 s390x 1.4.19-4 [255 kB] 784s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x autoconf all 2.71-3 [339 kB] 784s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x autotools-dev all 20220109.1 [44.9 kB] 784s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB] 784s Get:6 http://ftpmaster.internal/ubuntu noble/universe s390x gcc-12-base s390x 12.3.0-15ubuntu1 [45.5 kB] 784s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB] 784s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB] 784s Get:9 http://ftpmaster.internal/ubuntu noble/universe s390x cpp-12 s390x 12.3.0-15ubuntu1 [8176 kB] 785s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 785s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 785s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 785s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240303-1ubuntu1 [49.9 kB] 785s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 785s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240303-1ubuntu1 [31.1 kB] 785s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240303-1ubuntu1 [9392 B] 785s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240303-1ubuntu1 [2998 kB] 786s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240303-1ubuntu1 [1186 kB] 786s Get:19 http://ftpmaster.internal/ubuntu noble/universe s390x libgcc-12-dev s390x 12.3.0-15ubuntu1 [857 kB] 786s Get:20 http://ftpmaster.internal/ubuntu noble/universe s390x gcc-12 s390x 12.3.0-15ubuntu1 [16.2 MB] 787s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 787s Get:22 http://ftpmaster.internal/ubuntu noble/universe s390x libgfortran-12-dev s390x 12.3.0-15ubuntu1 [517 kB] 787s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] 787s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] 787s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] 787s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1build1 [225 kB] 787s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] 787s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu6 [64.7 kB] 787s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] 787s Get:30 http://ftpmaster.internal/ubuntu noble/universe s390x gfortran-12 s390x 12.3.0-15ubuntu1 [8590 kB] 787s Get:31 http://ftpmaster.internal/ubuntu noble/universe s390x libaec0 s390x 1.1.2-1 [25.7 kB] 787s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 787s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 787s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 787s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 787s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 787s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 787s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 787s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 787s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 787s Get:41 http://ftpmaster.internal/ubuntu noble/universe s390x libdouble-conversion3 s390x 3.3.0-1 [39.6 kB] 787s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-amdgpu1 s390x 2.4.120-2 [21.1 kB] 787s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-nouveau2 s390x 2.4.120-2 [18.5 kB] 787s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-radeon1 s390x 2.4.120-2 [22.7 kB] 787s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libevent-2.1-7 s390x 2.1.12-stable-9 [144 kB] 787s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libevent-extra-2.1-7 s390x 2.1.12-stable-9 [63.6 kB] 787s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libevent-pthreads-2.1-7 s390x 2.1.12-stable-9 [7692 B] 787s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libevent-openssl-2.1-7 s390x 2.1.12-stable-9 [15.0 kB] 787s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libevent-dev s390x 2.1.12-stable-9 [275 kB] 787s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x librdmacm1 s390x 50.0-1 [73.9 kB] 787s Get:51 http://ftpmaster.internal/ubuntu noble/universe s390x libfabric1 s390x 1.17.0-3 [513 kB] 787s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-double3 s390x 3.3.10-1ubuntu1 [465 kB] 787s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libvulkan1 s390x 1.3.275.0-1 [155 kB] 787s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libglapi-mesa s390x 24.0.1-1ubuntu1 [68.7 kB] 787s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libllvm17 s390x 1:17.0.6-5build1 [31.2 MB] 788s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri3-0 s390x 1.15-1 [7270 B] 788s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libgl1-mesa-dri s390x 24.0.1-1ubuntu1 [7184 kB] 788s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libglvnd0 s390x 1.7.0-1 [106 kB] 788s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libx11-xcb1 s390x 2:1.8.7-1 [7778 B] 788s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri2-0 s390x 1.15-1 [7426 B] 788s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-glx0 s390x 1.15-1 [25.8 kB] 788s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-present0 s390x 1.15-1 [5752 B] 788s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-randr0 s390x 1.15-1 [19.0 kB] 788s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-sync1 s390x 1.15-1 [9392 B] 788s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xfixes0 s390x 1.15-1 [10.5 kB] 788s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libxfixes3 s390x 1:6.0.0-2 [10.6 kB] 788s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libxshmfence1 s390x 1.3-1build4 [5334 B] 788s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libxxf86vm1 s390x 1:1.1.4-1build3 [9900 B] 788s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libglx-mesa0 s390x 24.0.1-1ubuntu1 [182 kB] 788s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libglx0 s390x 1.7.0-1 [31.4 kB] 788s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libgl1 s390x 1.7.0-1 [137 kB] 788s Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2 [40.2 kB] 788s Get:73 http://ftpmaster.internal/ubuntu noble/universe s390x libglew2.2 s390x 2.2.0-4 [202 kB] 788s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x libsz2 s390x 1.1.2-1 [5346 B] 789s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-103-1 s390x 1.10.10+repack-3ubuntu1 [1425 kB] 789s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x libhdf5-hl-100 s390x 1.10.10+repack-3ubuntu1 [57.5 kB] 789s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc15 s390x 2.10.0-1 [174 kB] 789s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 789s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 789s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 789s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 789s Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libjsoncpp25 s390x 1.9.5-6 [75.5 kB] 789s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libkim-api2 s390x 2.3.0-1 [544 kB] 789s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 789s Get:85 http://ftpmaster.internal/ubuntu noble/universe s390x libnetcdf19 s390x 1:4.9.2-3ubuntu1 [506 kB] 789s Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libmunge2 s390x 0.5.15-3ubuntu1 [17.3 kB] 789s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libpciaccess0 s390x 0.17-3 [18.5 kB] 789s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu1 [11.7 kB] 789s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1 [39.1 kB] 789s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-plugins s390x 2.10.0-1 [16.1 kB] 789s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix2 s390x 5.0.1-4 [722 kB] 789s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi3 s390x 4.1.6-5ubuntu1 [3024 kB] 789s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x libpnetcdf0d s390x 1.12.3-2 [820 kB] 789s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12 s390x 3.12.2-1 [2561 kB] 789s Get:95 http://ftpmaster.internal/ubuntu noble/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 789s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x libogg0 s390x 1.3.5-3 [22.7 kB] 789s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libopengl0 s390x 1.7.0-1 [45.9 kB] 789s Get:98 http://ftpmaster.internal/ubuntu noble/universe s390x proj-data all 9.3.1-1 [7867 kB] 789s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 789s Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 789s Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 789s Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 789s Get:103 http://ftpmaster.internal/ubuntu noble/universe s390x libproj25 s390x 9.3.1-1 [1368 kB] 790s Get:104 http://ftpmaster.internal/ubuntu noble/universe s390x libtbbmalloc2 s390x 2021.11.0-2ubuntu2 [68.0 kB] 790s Get:105 http://ftpmaster.internal/ubuntu noble/universe s390x libtbbbind-2-5 s390x 2021.11.0-2ubuntu2 [16.7 kB] 790s Get:106 http://ftpmaster.internal/ubuntu noble/universe s390x libtbb12 s390x 2021.11.0-2ubuntu2 [118 kB] 790s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 790s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libtheora0 s390x 1.1.1+dfsg.1-16.1 [262 kB] 790s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 790s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 790s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 790s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 790s Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x libvtk9.1 s390x 9.1.0+really9.1.0+dfsg2-7build1 [22.1 MB] 792s Get:114 http://ftpmaster.internal/ubuntu noble/universe s390x liblammps0 s390x 20240207+dfsg-1 [7953 kB] 792s Get:115 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-common all 4.1.6-5ubuntu1 [178 kB] 792s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libnl-3-dev s390x 3.7.0-0.3 [104 kB] 792s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libnl-route-3-dev s390x 3.7.0-0.3 [218 kB] 792s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libibverbs-dev s390x 50.0-2 [717 kB] 792s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libnuma-dev s390x 2.0.18-1 [38.9 kB] 792s Get:120 http://ftpmaster.internal/ubuntu noble/main s390x libltdl7 s390x 2.4.7-7 [41.6 kB] 792s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libltdl-dev s390x 2.4.7-7 [170 kB] 792s Get:122 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-dev s390x 2.10.0-1 [270 kB] 792s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] 792s Get:124 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix-dev s390x 5.0.1-4 [4027 kB] 793s Get:125 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-bin s390x 4.1.6-5ubuntu1 [92.5 kB] 793s Get:126 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi-dev s390x 4.1.6-5ubuntu1 [1571 kB] 793s Get:127 http://ftpmaster.internal/ubuntu noble/universe s390x mpi-default-dev s390x 1.15 [3118 B] 793s Get:128 http://ftpmaster.internal/ubuntu noble/universe s390x liblammps-dev s390x 20240207+dfsg-1 [112 kB] 793s Get:129 http://ftpmaster.internal/ubuntu noble/universe s390x mpi-default-bin s390x 1.15 [2338 B] 793s Get:130 http://ftpmaster.internal/ubuntu noble/universe s390x python3-lammps s390x 20240207+dfsg-1 [70.4 kB] 793s Fetched 154 MB in 9s (16.4 MB/s) 793s Selecting previously unselected package m4. 793s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51729 files and directories currently installed.) 793s Preparing to unpack .../000-m4_1.4.19-4_s390x.deb ... 793s Unpacking m4 (1.4.19-4) ... 793s Selecting previously unselected package autoconf. 793s Preparing to unpack .../001-autoconf_2.71-3_all.deb ... 793s Unpacking autoconf (2.71-3) ... 793s Selecting previously unselected package autotools-dev. 793s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 793s Unpacking autotools-dev 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794s Unpacking libitm1:s390x (14-20240303-1ubuntu1) ... 794s Selecting previously unselected package libatomic1:s390x. 794s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_s390x.deb ... 794s Unpacking libatomic1:s390x (14-20240303-1ubuntu1) ... 794s Selecting previously unselected package libasan8:s390x. 794s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_s390x.deb ... 794s Unpacking libasan8:s390x (14-20240303-1ubuntu1) ... 794s Selecting previously unselected package libubsan1:s390x. 794s Preparing to unpack .../016-libubsan1_14-20240303-1ubuntu1_s390x.deb ... 794s Unpacking libubsan1:s390x (14-20240303-1ubuntu1) ... 794s Selecting previously unselected package libgcc-12-dev:s390x. 794s Preparing to unpack .../017-libgcc-12-dev_12.3.0-15ubuntu1_s390x.deb ... 794s Unpacking libgcc-12-dev:s390x (12.3.0-15ubuntu1) ... 795s Selecting previously unselected package gcc-12. 795s Preparing to unpack .../018-gcc-12_12.3.0-15ubuntu1_s390x.deb ... 795s Unpacking gcc-12 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(1:4.4.36-4) ... 795s Selecting previously unselected package libtirpc-dev:s390x. 795s Preparing to unpack .../024-libtirpc-dev_1.3.4+ds-1build1_s390x.deb ... 795s Unpacking libtirpc-dev:s390x (1.3.4+ds-1build1) ... 795s Selecting previously unselected package libnsl-dev:s390x. 795s Preparing to unpack .../025-libnsl-dev_1.3.0-3_s390x.deb ... 795s Unpacking libnsl-dev:s390x (1.3.0-3) ... 795s Selecting previously unselected package rpcsvc-proto. 795s Preparing to unpack .../026-rpcsvc-proto_1.4.2-0ubuntu6_s390x.deb ... 795s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 795s Selecting previously unselected package libc6-dev:s390x. 795s Preparing to unpack .../027-libc6-dev_2.39-0ubuntu2_s390x.deb ... 795s Unpacking libc6-dev:s390x (2.39-0ubuntu2) ... 796s Selecting previously unselected package gfortran-12. 796s Preparing to unpack .../028-gfortran-12_12.3.0-15ubuntu1_s390x.deb ... 796s Unpacking gfortran-12 (12.3.0-15ubuntu1) ... 796s Selecting previously unselected package libaec0:s390x. 796s Preparing to unpack .../029-libaec0_1.1.2-1_s390x.deb ... 796s Unpacking libaec0:s390x (1.1.2-1) ... 796s Selecting previously unselected package libblas3:s390x. 796s Preparing to unpack .../030-libblas3_3.12.0-3_s390x.deb ... 796s Unpacking libblas3:s390x (3.12.0-3) ... 796s Selecting previously unselected package libfreetype6:s390x. 796s Preparing to unpack .../031-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 796s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 796s Selecting previously unselected package libfontconfig1:s390x. 796s Preparing to unpack .../032-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 796s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 796s Selecting previously unselected package libpixman-1-0:s390x. 796s Preparing to unpack .../033-libpixman-1-0_0.42.2-1_s390x.deb ... 796s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 796s Selecting previously unselected package libxcb-render0:s390x. 796s Preparing to unpack .../034-libxcb-render0_1.15-1_s390x.deb ... 796s Unpacking libxcb-render0:s390x (1.15-1) ... 796s Selecting previously unselected package libxcb-shm0:s390x. 796s Preparing to unpack .../035-libxcb-shm0_1.15-1_s390x.deb ... 796s Unpacking libxcb-shm0:s390x (1.15-1) ... 796s Selecting previously unselected package libxrender1:s390x. 796s Preparing to unpack .../036-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 796s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 796s Selecting previously unselected package libcairo2:s390x. 796s Preparing to unpack .../037-libcairo2_1.18.0-1_s390x.deb ... 796s Unpacking libcairo2:s390x (1.18.0-1) ... 796s Selecting previously unselected package libdeflate0:s390x. 796s Preparing to unpack .../038-libdeflate0_1.19-1_s390x.deb ... 796s Unpacking libdeflate0:s390x (1.19-1) ... 796s Selecting previously unselected package libdouble-conversion3:s390x. 796s Preparing to unpack .../039-libdouble-conversion3_3.3.0-1_s390x.deb ... 796s Unpacking libdouble-conversion3:s390x (3.3.0-1) ... 796s Selecting previously unselected package libdrm-amdgpu1:s390x. 796s Preparing to unpack .../040-libdrm-amdgpu1_2.4.120-2_s390x.deb ... 796s Unpacking libdrm-amdgpu1:s390x (2.4.120-2) ... 796s Selecting previously unselected package libdrm-nouveau2:s390x. 796s Preparing to unpack .../041-libdrm-nouveau2_2.4.120-2_s390x.deb ... 796s Unpacking libdrm-nouveau2:s390x (2.4.120-2) ... 796s Selecting previously unselected package libdrm-radeon1:s390x. 796s Preparing to unpack .../042-libdrm-radeon1_2.4.120-2_s390x.deb ... 796s Unpacking libdrm-radeon1:s390x (2.4.120-2) ... 796s Selecting previously unselected package libevent-2.1-7:s390x. 796s Preparing to unpack .../043-libevent-2.1-7_2.1.12-stable-9_s390x.deb ... 796s Unpacking libevent-2.1-7:s390x (2.1.12-stable-9) ... 796s Selecting previously unselected package libevent-extra-2.1-7:s390x. 796s Preparing to unpack .../044-libevent-extra-2.1-7_2.1.12-stable-9_s390x.deb ... 796s Unpacking libevent-extra-2.1-7:s390x (2.1.12-stable-9) ... 796s Selecting previously unselected package libevent-pthreads-2.1-7:s390x. 796s Preparing to unpack .../045-libevent-pthreads-2.1-7_2.1.12-stable-9_s390x.deb ... 796s Unpacking libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ... 796s Selecting previously unselected package libevent-openssl-2.1-7:s390x. 796s Preparing to unpack .../046-libevent-openssl-2.1-7_2.1.12-stable-9_s390x.deb ... 796s Unpacking libevent-openssl-2.1-7:s390x (2.1.12-stable-9) ... 796s Selecting previously unselected package libevent-dev. 796s Preparing to unpack .../047-libevent-dev_2.1.12-stable-9_s390x.deb ... 796s Unpacking libevent-dev (2.1.12-stable-9) ... 796s Selecting previously unselected package librdmacm1:s390x. 796s Preparing to unpack .../048-librdmacm1_50.0-1_s390x.deb ... 796s Unpacking librdmacm1:s390x (50.0-1) ... 796s Selecting previously unselected package libfabric1:s390x. 796s Preparing to unpack .../049-libfabric1_1.17.0-3_s390x.deb ... 796s 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798s Preparing to unpack .../060-libxcb-present0_1.15-1_s390x.deb ... 798s Unpacking libxcb-present0:s390x (1.15-1) ... 798s Selecting previously unselected package libxcb-randr0:s390x. 798s Preparing to unpack .../061-libxcb-randr0_1.15-1_s390x.deb ... 798s Unpacking libxcb-randr0:s390x (1.15-1) ... 798s Selecting previously unselected package libxcb-sync1:s390x. 798s Preparing to unpack .../062-libxcb-sync1_1.15-1_s390x.deb ... 798s Unpacking libxcb-sync1:s390x (1.15-1) ... 798s Selecting previously unselected package libxcb-xfixes0:s390x. 798s Preparing to unpack .../063-libxcb-xfixes0_1.15-1_s390x.deb ... 798s Unpacking libxcb-xfixes0:s390x (1.15-1) ... 798s Selecting previously unselected package libxfixes3:s390x. 798s Preparing to unpack .../064-libxfixes3_1%3a6.0.0-2_s390x.deb ... 798s Unpacking libxfixes3:s390x (1:6.0.0-2) ... 798s Selecting previously unselected package libxshmfence1:s390x. 798s Preparing to unpack .../065-libxshmfence1_1.3-1build4_s390x.deb ... 798s Unpacking libxshmfence1:s390x (1.3-1build4) ... 798s Selecting previously unselected package libxxf86vm1:s390x. 798s Preparing to unpack .../066-libxxf86vm1_1%3a1.1.4-1build3_s390x.deb ... 798s Unpacking libxxf86vm1:s390x (1:1.1.4-1build3) ... 798s Selecting previously unselected package libglx-mesa0:s390x. 798s Preparing to unpack .../067-libglx-mesa0_24.0.1-1ubuntu1_s390x.deb ... 798s Unpacking libglx-mesa0:s390x (24.0.1-1ubuntu1) ... 798s Selecting previously unselected package libglx0:s390x. 798s Preparing to unpack .../068-libglx0_1.7.0-1_s390x.deb ... 798s Unpacking libglx0:s390x (1.7.0-1) ... 798s Selecting previously unselected package libgl1:s390x. 798s Preparing to unpack .../069-libgl1_1.7.0-1_s390x.deb ... 798s Unpacking libgl1:s390x (1.7.0-1) ... 798s Selecting previously unselected package libgl2ps1.4. 798s Preparing to unpack .../070-libgl2ps1.4_1.4.2+dfsg1-2_s390x.deb ... 798s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 798s Selecting previously unselected package libglew2.2:s390x. 798s Preparing to unpack .../071-libglew2.2_2.2.0-4_s390x.deb ... 798s Unpacking libglew2.2:s390x (2.2.0-4) ... 798s Selecting previously unselected package libsz2:s390x. 798s Preparing to unpack .../072-libsz2_1.1.2-1_s390x.deb ... 798s Unpacking libsz2:s390x (1.1.2-1) ... 798s Selecting previously unselected package libhdf5-103-1:s390x. 798s Preparing to unpack .../073-libhdf5-103-1_1.10.10+repack-3ubuntu1_s390x.deb ... 798s Unpacking libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 798s Selecting previously unselected package libhdf5-hl-100:s390x. 798s Preparing to unpack .../074-libhdf5-hl-100_1.10.10+repack-3ubuntu1_s390x.deb ... 798s Unpacking libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 798s Selecting previously unselected package libhwloc15:s390x. 798s Preparing to unpack .../075-libhwloc15_2.10.0-1_s390x.deb ... 798s Unpacking libhwloc15:s390x (2.10.0-1) ... 798s Selecting previously unselected package libjpeg-turbo8:s390x. 798s Preparing to unpack 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libkim-api2:s390x (2.3.0-1) ... 799s Selecting previously unselected package liblapack3:s390x. 799s Preparing to unpack .../082-liblapack3_3.12.0-3_s390x.deb ... 799s Unpacking liblapack3:s390x (3.12.0-3) ... 799s Selecting previously unselected package libnetcdf19:s390x. 799s Preparing to unpack .../083-libnetcdf19_1%3a4.9.2-3ubuntu1_s390x.deb ... 799s Unpacking libnetcdf19:s390x (1:4.9.2-3ubuntu1) ... 799s Selecting previously unselected package libmunge2:s390x. 799s Preparing to unpack .../084-libmunge2_0.5.15-3ubuntu1_s390x.deb ... 799s Unpacking libmunge2:s390x (0.5.15-3ubuntu1) ... 799s Selecting previously unselected package libpciaccess0:s390x. 799s Preparing to unpack .../085-libpciaccess0_0.17-3_s390x.deb ... 799s Unpacking libpciaccess0:s390x (0.17-3) ... 799s Selecting previously unselected package libxnvctrl0:s390x. 799s Preparing to unpack .../086-libxnvctrl0_510.47.03-0ubuntu1_s390x.deb ... 799s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu1) ... 799s Selecting previously unselected package ocl-icd-libopencl1:s390x. 799s Preparing to unpack .../087-ocl-icd-libopencl1_2.3.2-1_s390x.deb ... 799s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1) ... 799s Selecting previously unselected package libhwloc-plugins:s390x. 799s Preparing to unpack .../088-libhwloc-plugins_2.10.0-1_s390x.deb ... 799s Unpacking libhwloc-plugins:s390x (2.10.0-1) ... 799s Selecting previously unselected package libpmix2:s390x. 799s Preparing to unpack .../089-libpmix2_5.0.1-4_s390x.deb ... 799s Unpacking libpmix2:s390x (5.0.1-4) ... 799s Selecting previously unselected package libopenmpi3:s390x. 799s Preparing to unpack .../090-libopenmpi3_4.1.6-5ubuntu1_s390x.deb ... 799s Unpacking libopenmpi3:s390x (4.1.6-5ubuntu1) ... 799s Selecting previously unselected package libpnetcdf0d:s390x. 799s Preparing to unpack .../091-libpnetcdf0d_1.12.3-2_s390x.deb ... 799s Unpacking libpnetcdf0d:s390x (1.12.3-2) ... 799s Selecting previously unselected package libpython3.12:s390x. 799s Preparing to unpack .../092-libpython3.12_3.12.2-1_s390x.deb ... 799s Unpacking libpython3.12:s390x (3.12.2-1) ... 799s Selecting previously unselected package libvoro++1. 799s Preparing to unpack .../093-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 799s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 799s Selecting previously unselected package libogg0:s390x. 799s Preparing to unpack .../094-libogg0_1.3.5-3_s390x.deb ... 799s Unpacking libogg0:s390x (1.3.5-3) ... 799s Selecting previously unselected package libopengl0:s390x. 799s Preparing to unpack .../095-libopengl0_1.7.0-1_s390x.deb ... 799s Unpacking libopengl0:s390x (1.7.0-1) ... 799s Selecting previously unselected package proj-data. 799s Preparing to unpack .../096-proj-data_9.3.1-1_all.deb ... 799s Unpacking proj-data (9.3.1-1) ... 799s Selecting previously unselected package libjbig0:s390x. 799s Preparing to unpack .../097-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 799s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 799s Selecting previously unselected package libsharpyuv0:s390x. 799s Preparing to unpack .../098-libsharpyuv0_1.3.2-0.4_s390x.deb ... 799s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 799s Selecting previously unselected package libwebp7:s390x. 799s Preparing to unpack .../099-libwebp7_1.3.2-0.4_s390x.deb ... 799s Unpacking libwebp7:s390x (1.3.2-0.4) ... 800s Selecting previously unselected package libtiff6:s390x. 800s Preparing to unpack .../100-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 800s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 800s Selecting previously unselected package libproj25:s390x. 800s Preparing to unpack .../101-libproj25_9.3.1-1_s390x.deb ... 800s Unpacking libproj25:s390x (9.3.1-1) ... 800s Selecting previously unselected package libtbbmalloc2:s390x. 800s Preparing to unpack .../102-libtbbmalloc2_2021.11.0-2ubuntu2_s390x.deb ... 800s Unpacking libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 800s Selecting previously unselected package libtbbbind-2-5:s390x. 800s Preparing to unpack .../103-libtbbbind-2-5_2021.11.0-2ubuntu2_s390x.deb ... 800s Unpacking libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 800s Selecting previously unselected package libtbb12:s390x. 800s Preparing to unpack .../104-libtbb12_2021.11.0-2ubuntu2_s390x.deb ... 800s Unpacking libtbb12:s390x (2021.11.0-2ubuntu2) ... 800s Selecting previously unselected package libtcl8.6:s390x. 800s Preparing to unpack .../105-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 800s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 800s Selecting previously unselected package libtheora0:s390x. 800s Preparing to unpack .../106-libtheora0_1.1.1+dfsg.1-16.1_s390x.deb ... 800s Unpacking libtheora0:s390x (1.1.1+dfsg.1-16.1) ... 800s Selecting previously unselected package libxft2:s390x. 800s Preparing to unpack .../107-libxft2_2.3.6-1_s390x.deb ... 800s Unpacking libxft2:s390x (2.3.6-1) ... 800s Selecting previously unselected package x11-common. 800s Preparing to unpack .../108-x11-common_1%3a7.7+23ubuntu2_all.deb ... 800s Unpacking x11-common (1:7.7+23ubuntu2) ... 800s Selecting previously unselected package libxss1:s390x. 800s Preparing to unpack .../109-libxss1_1%3a1.2.3-1build2_s390x.deb ... 800s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 800s Selecting previously unselected package libtk8.6:s390x. 800s Preparing to unpack .../110-libtk8.6_8.6.13-2_s390x.deb ... 800s Unpacking libtk8.6:s390x (8.6.13-2) ... 800s Selecting previously unselected package libvtk9.1:s390x. 800s Preparing to unpack .../111-libvtk9.1_9.1.0+really9.1.0+dfsg2-7build1_s390x.deb ... 800s Unpacking libvtk9.1:s390x (9.1.0+really9.1.0+dfsg2-7build1) ... 801s Selecting previously unselected package liblammps0:s390x. 801s Preparing to unpack .../112-liblammps0_20240207+dfsg-1_s390x.deb ... 801s Unpacking liblammps0:s390x (20240207+dfsg-1) ... 801s Selecting previously unselected package openmpi-common. 801s Preparing to unpack .../113-openmpi-common_4.1.6-5ubuntu1_all.deb ... 801s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 801s Selecting previously unselected package libnl-3-dev:s390x. 801s Preparing to unpack .../114-libnl-3-dev_3.7.0-0.3_s390x.deb ... 801s Unpacking libnl-3-dev:s390x (3.7.0-0.3) ... 801s Selecting previously unselected package libnl-route-3-dev:s390x. 801s Preparing to unpack .../115-libnl-route-3-dev_3.7.0-0.3_s390x.deb ... 801s Unpacking libnl-route-3-dev:s390x (3.7.0-0.3) ... 801s Selecting previously unselected package libibverbs-dev:s390x. 801s Preparing to unpack .../116-libibverbs-dev_50.0-2_s390x.deb ... 801s Unpacking libibverbs-dev:s390x (50.0-2) ... 801s Selecting previously unselected package libnuma-dev:s390x. 801s Preparing to unpack .../117-libnuma-dev_2.0.18-1_s390x.deb ... 801s Unpacking libnuma-dev:s390x (2.0.18-1) ... 801s Selecting previously unselected package libltdl7:s390x. 801s Preparing to unpack .../118-libltdl7_2.4.7-7_s390x.deb ... 801s Unpacking libltdl7:s390x (2.4.7-7) ... 801s Selecting previously unselected package libltdl-dev:s390x. 801s Preparing to unpack .../119-libltdl-dev_2.4.7-7_s390x.deb ... 801s Unpacking libltdl-dev:s390x (2.4.7-7) ... 801s Selecting previously unselected package libhwloc-dev:s390x. 801s Preparing to unpack .../120-libhwloc-dev_2.10.0-1_s390x.deb ... 801s Unpacking libhwloc-dev:s390x (2.10.0-1) ... 801s Selecting previously unselected package zlib1g-dev:s390x. 801s Preparing to unpack .../121-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_s390x.deb ... 801s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 801s Selecting previously unselected package libpmix-dev:s390x. 801s Preparing to unpack .../122-libpmix-dev_5.0.1-4_s390x.deb ... 801s Unpacking libpmix-dev:s390x (5.0.1-4) ... 801s Selecting previously unselected package openmpi-bin. 801s Preparing to unpack .../123-openmpi-bin_4.1.6-5ubuntu1_s390x.deb ... 801s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 801s Selecting previously unselected package libopenmpi-dev:s390x. 801s Preparing to unpack .../124-libopenmpi-dev_4.1.6-5ubuntu1_s390x.deb ... 801s Unpacking libopenmpi-dev:s390x (4.1.6-5ubuntu1) ... 802s Selecting previously unselected package mpi-default-dev. 802s Preparing to unpack .../125-mpi-default-dev_1.15_s390x.deb ... 802s Unpacking mpi-default-dev (1.15) ... 802s Selecting previously unselected package liblammps-dev. 802s Preparing to unpack .../126-liblammps-dev_20240207+dfsg-1_s390x.deb ... 802s Unpacking liblammps-dev (20240207+dfsg-1) ... 802s Selecting previously unselected package mpi-default-bin. 802s Preparing to unpack .../127-mpi-default-bin_1.15_s390x.deb ... 802s Unpacking mpi-default-bin (1.15) ... 802s Selecting previously unselected package python3-lammps. 802s Preparing to unpack .../128-python3-lammps_20240207+dfsg-1_s390x.deb ... 802s Unpacking python3-lammps (20240207+dfsg-1) ... 802s Selecting previously unselected package autopkgtest-satdep. 802s Preparing to unpack .../129-7-autopkgtest-satdep.deb ... 802s Unpacking autopkgtest-satdep (0) ... 802s Setting up libxcb-dri3-0:s390x (1.15-1) ... 802s Setting up libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 802s Setting up libpixman-1-0:s390x (0.42.2-1) ... 802s Setting up librdmacm1:s390x (50.0-1) ... 802s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 802s Setting up libx11-xcb1:s390x (2:1.8.7-1) ... 802s Setting up libpciaccess0:s390x (0.17-3) ... 802s Setting up libdouble-conversion3:s390x (3.3.0-1) ... 802s Setting up libevent-extra-2.1-7:s390x (2.1.12-stable-9) ... 802s Setting up libdrm-nouveau2:s390x (2.4.120-2) ... 802s Setting up libxcb-xfixes0:s390x (1.15-1) ... 802s Setting up libogg0:s390x (1.3.5-3) ... 802s Setting up proj-data (9.3.1-1) ... 802s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 802s Setting up libxcb-render0:s390x (1.15-1) ... 802s Setting up libdrm-radeon1:s390x (2.4.120-2) ... 802s Setting up libglvnd0:s390x (1.7.0-1) ... 802s Setting up libxcb-glx0:s390x (1.15-1) ... 802s Setting up x11-common (1:7.7+23ubuntu2) ... 802s Setting up libdeflate0:s390x (1.19-1) ... 802s Setting up linux-libc-dev:s390x (6.8.0-11.11) ... 802s Setting up libevent-openssl-2.1-7:s390x (2.1.12-stable-9) ... 802s Setting up m4 (1.4.19-4) ... 802s Setting up libxcb-shm0:s390x (1.15-1) ... 802s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 802s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 802s Setting up libaec0:s390x (1.1.2-1) ... 802s Setting up libopengl0:s390x (1.7.0-1) ... 802s Setting up libxxf86vm1:s390x (1:1.1.4-1build3) ... 802s Setting up gcc-12-base:s390x (12.3.0-15ubuntu1) ... 802s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu1) ... 802s Setting up libxcb-present0:s390x (1.15-1) ... 802s Setting up autotools-dev (20220109.1) ... 802s Setting up libblas3:s390x (3.12.0-3) ... 802s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 802s Setting up libtirpc-dev:s390x (1.3.4+ds-1build1) ... 802s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 802s Setting up libmunge2:s390x (0.5.15-3ubuntu1) ... 802s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 802s Setting up libxfixes3:s390x (1:6.0.0-2) ... 802s Setting up libxcb-sync1:s390x (1.15-1) ... 802s Setting up fonts-dejavu-mono (2.37-8) ... 802s Setting up libhwloc15:s390x (2.10.0-1) ... 802s Setting up libmpc3:s390x (1.3.1-1) ... 802s Setting up libatomic1:s390x (14-20240303-1ubuntu1) ... 802s Setting up libevent-2.1-7:s390x (2.1.12-stable-9) ... 802s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 802s Setting up libjsoncpp25:s390x (1.9.5-6) ... 802s Setting up fonts-dejavu-core (2.37-8) ... 802s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 802s Setting up libltdl7:s390x (2.4.7-7) ... 802s Setting up libfftw3-double3:s390x (3.3.10-1ubuntu1) ... 802s Setting up libglapi-mesa:s390x (24.0.1-1ubuntu1) ... 802s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 802s Setting up libvulkan1:s390x (1.3.275.0-1) ... 802s Setting up autoconf (2.71-3) ... 802s Setting up libwebp7:s390x (1.3.2-0.4) ... 802s Setting up libubsan1:s390x (14-20240303-1ubuntu1) ... 802s Setting up libxcb-dri2-0:s390x (1.15-1) ... 802s Setting up libnl-3-dev:s390x (3.7.0-0.3) ... 802s Setting up libnsl-dev:s390x (1.3.0-3) ... 802s Setting up ocl-icd-libopencl1:s390x (2.3.2-1) ... 802s Setting up libxshmfence1:s390x (1.3-1build4) ... 802s Setting up libcrypt-dev:s390x (1:4.4.36-4) ... 802s Setting up libxcb-randr0:s390x (1.15-1) ... 802s Setting up libasan8:s390x (14-20240303-1ubuntu1) ... 802s Setting up openmpi-common (4.1.6-5ubuntu1) ... 802s Setting up libxss1:s390x (1:1.2.3-1build2) ... 802s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 802s Setting up libisl23:s390x (0.26-3) ... 802s Setting up libc-dev-bin (2.39-0ubuntu2) ... 802s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 802s Setting up libllvm17:s390x (1:17.0.6-5build1) ... 802s Setting up libpython3.12:s390x (3.12.2-1) ... 802s Setting up libcc1-0:s390x (14-20240303-1ubuntu1) ... 802s Setting up libsz2:s390x (1.1.2-1) ... 803s Setting up libitm1:s390x (14-20240303-1ubuntu1) ... 803s Setting up libevent-pthreads-2.1-7:s390x (2.1.12-stable-9) ... 803s Setting up libdrm-amdgpu1:s390x (2.4.120-2) ... 803s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 803s Setting up automake (1:1.16.5-1.3ubuntu1) ... 803s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 803s Setting up libfabric1:s390x (1.17.0-3) ... 803s Setting up liblapack3:s390x (3.12.0-3) ... 803s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 803s Setting up cpp-12 (12.3.0-15ubuntu1) ... 803s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 803s Setting up libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ... 803s Setting up libhwloc-plugins:s390x (2.10.0-1) ... 803s Setting up libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 803s Setting up libnl-route-3-dev:s390x (3.7.0-0.3) ... 803s Setting up libltdl-dev:s390x (2.4.7-7) ... 803s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 803s Setting up libgcc-12-dev:s390x (12.3.0-15ubuntu1) ... 803s Setting up libevent-dev (2.1.12-stable-9) ... 803s Setting up libhdf5-103-1:s390x (1.10.10+repack-3ubuntu1) ... 803s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 803s Setting up libc6-dev:s390x (2.39-0ubuntu2) ... 803s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 803s Setting up libhdf5-hl-100:s390x (1.10.10+repack-3ubuntu1) ... 803s Setting up libxft2:s390x (2.3.6-1) ... 803s Setting up libglx-mesa0:s390x (24.0.1-1ubuntu1) ... 803s Setting up libglx0:s390x (1.7.0-1) ... 803s Setting up libproj25:s390x (9.3.1-1) ... 803s Setting up libpmix2:s390x (5.0.1-4) ... 803s Setting up libopenmpi3:s390x (4.1.6-5ubuntu1) ... 803s Setting up libtk8.6:s390x (8.6.13-2) ... 803s Setting up libgfortran-12-dev:s390x (12.3.0-15ubuntu1) ... 803s Setting up libtbb12:s390x (2021.11.0-2ubuntu2) ... 803s Setting up libibverbs-dev:s390x (50.0-2) ... 803s Setting up libcairo2:s390x (1.18.0-1) ... 803s Setting up libnuma-dev:s390x (2.0.18-1) ... 803s Setting up libgl1:s390x (1.7.0-1) ... 803s Setting up gcc-12 (12.3.0-15ubuntu1) ... 803s Setting up libglew2.2:s390x (2.2.0-4) ... 803s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... 803s Setting up libnetcdf19:s390x (1:4.9.2-3ubuntu1) ... 803s Setting up libtheora0:s390x (1.1.1+dfsg.1-16.1) ... 803s Setting up libpnetcdf0d:s390x (1.12.3-2) ... 803s Setting up libhwloc-dev:s390x (2.10.0-1) ... 803s Setting up libpmix-dev:s390x (5.0.1-4) ... 803s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 803s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 803s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 803s Setting up mpi-default-bin (1.15) ... 803s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 803s Setting up libvtk9.1:s390x (9.1.0+really9.1.0+dfsg2-7build1) ... 803s Setting up gfortran-12 (12.3.0-15ubuntu1) ... 803s Setting up libopenmpi-dev:s390x (4.1.6-5ubuntu1) ... 803s update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode 803s Setting up libkim-api2:s390x (2.3.0-1) ... 803s Setting up liblammps0:s390x (20240207+dfsg-1) ... 803s Setting up mpi-default-dev (1.15) ... 803s Setting up liblammps-dev (20240207+dfsg-1) ... 803s Setting up python3-lammps (20240207+dfsg-1) ... 803s Setting up autopkgtest-satdep (0) ... 803s Processing triggers for man-db (2.12.0-3) ... 804s Processing triggers for install-info (7.1-3) ... 804s Processing triggers for libc-bin (2.39-0ubuntu2) ... 809s (Reading database ... 58774 files and directories currently installed.) 809s Removing autopkgtest-satdep (0) ... 834s autopkgtest [23:46:50]: test command1: cd python/examples; python3 demo.py 834s autopkgtest [23:46:50]: test command1: [----------------------- 834s LAMMPS (7 Feb 2024 - Update 1) 835s 835s Python output: 835s Natoms, mass, x[0][0] coord = 4000 1.0 0.2727243714666721 835s Temperature from compute = 0.750609109548371 835s Energy from equal-style variable = -5.748192616533703 835s Velocity component from atom-style variable = -0.008231833025308041 835s Volume from get_thermo = 4738.213693437576 835s Natoms from get_natoms = 4000 835s Global coords from gather_atoms = 0.2727243714666721 0.1442606170751015 0.02741951954247279 835s Changed x[0][0] via scatter_atoms = 1.272724371466672 835s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 835s using 1 OpenMP thread(s) per MPI task 835s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 835s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 835s 1 by 1 by 1 MPI processor grid 835s Created 4000 atoms 835s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 835s create_atoms CPU = 0.003 seconds 835s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 835s Neighbor list info ... 835s update: every = 20 steps, delay = 0 steps, check = no 835s max neighbors/atom: 2000, page size: 100000 835s master list distance cutoff = 2.8 835s ghost atom cutoff = 2.8 835s binsize = 1.4, bins = 12 12 12 835s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 835s (1) pair lj/cut, perpetual 835s attributes: half, newton on 835s pair build: half/bin/atomonly/newton 835s stencil: half/bin/3d 835s bin: standard 835s Setting up Verlet run ... 835s Unit style : lj 835s Current step : 0 835s Time step : 0.005 835s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 835s Step Temp E_pair E_mol TotEng Press 835s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 835s 100 0.75060911 -5.7481926 0 -4.6225604 0.24772341 835s Loop time of 0.444346 on 1 procs for 100 steps with 4000 atoms 835s 835s Performance: 97221.516 tau/day, 225.050 timesteps/s, 900.199 katom-step/s 835s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 835s 835s MPI task timing breakdown: 835s Section | min time | avg time | max time |%varavg| %total 835s --------------------------------------------------------------- 835s Pair | 0.39549 | 0.39549 | 0.39549 | 0.0 | 89.00 835s Neigh | 0.036379 | 0.036379 | 0.036379 | 0.0 | 8.19 835s Comm | 0.00586 | 0.00586 | 0.00586 | 0.0 | 1.32 835s Output | 5.1638e-05 | 5.1638e-05 | 5.1638e-05 | 0.0 | 0.01 835s Modify | 0.0053259 | 0.0053259 | 0.0053259 | 0.0 | 1.20 835s Other | | 0.001243 | | | 0.28 835s 835s Nlocal: 4000 ave 4000 max 4000 min 835s Histogram: 1 0 0 0 0 0 0 0 0 0 835s Nghost: 5770 ave 5770 max 5770 min 835s Histogram: 1 0 0 0 0 0 0 0 0 0 835s Neighs: 150293 ave 150293 max 150293 min 835s Histogram: 1 0 0 0 0 0 0 0 0 0 835s 835s Total # of neighbors = 150293 835s Ave neighs/atom = 37.57325 835s Neighbor list builds = 5 835s Dangerous builds not checked 835s Total wall time: 0:00:00 835s autopkgtest [23:46:51]: test command1: -----------------------] 835s command1 PASS 835s autopkgtest [23:46:51]: test command1: - - - - - - - - - - results - - - - - - - - - - 836s autopkgtest [23:46:52]: @@@@@@@@@@@@@@@@@@@@ summary 836s crack PASS 836s dipole PASS 836s ellipse PASS 836s flow PASS 836s friction PASS 836s hugo PASS 836s command1 PASS 874s Creating nova instance adt-noble-s390x-lammps-20240316-233255-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240316.img (UUID 7afe023c-7cb8-41b6-91a7-c69e7d1e7c0d)... 874s Creating nova instance adt-noble-s390x-lammps-20240316-233255-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240316.img (UUID 7afe023c-7cb8-41b6-91a7-c69e7d1e7c0d)...