0s autopkgtest [00:31:22]: starting date and time: 2024-03-14 00:31:22+0000 0s autopkgtest [00:31:22]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [00:31:22]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cgu8kscl/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:perl,src:db5.3,src:gdbm,src:mmdebstrap --apt-upgrade kmer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=perl/5.38.2-3.2 db5.3/5.3.28+dfsg2-5 gdbm/1.23-5.1 mmdebstrap/1.4.3-6' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-s390x-9.secgroup --name adt-noble-s390x-kmer-20240314-003121-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 95s autopkgtest [00:32:57]: testbed dpkg architecture: s390x 95s autopkgtest [00:32:57]: testbed apt version: 2.7.12 95s autopkgtest [00:32:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 96s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 96s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [449 kB] 96s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 96s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [45.5 kB] 96s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2862 kB] 96s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [588 kB] 96s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 96s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 96s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 96s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3078 kB] 99s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 99s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [26.9 kB] 99s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 99s Fetched 7184 kB in 2s (3259 kB/s) 99s Reading package lists... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Calculating upgrade... 103s The following packages were automatically installed and are no longer required: 103s fuse3 libfuse3-3 libgdbm-compat4t64 libperl5.38 lto-disabled-list make 103s perl-modules-5.38 s390-tools-data s390-tools-signed 103s Use 'sudo apt autoremove' to remove them. 103s The following packages will be REMOVED: 103s dpkg-dev libdpkg-perl libgdbm-compat4 libgdbm6 perl s390-tools 103s sysconfig-hardware 103s The following NEW packages will be installed: 103s libgdbm-compat4t64 libgdbm6t64 103s The following packages have been kept back: 103s libperl5.38 103s The following packages will be upgraded: 103s console-setup console-setup-linux keyboard-configuration perl-base 103s perl-modules-5.38 103s 5 upgraded, 2 newly installed, 7 to remove and 1 not upgraded. 103s Need to get 7316 kB of archives. 103s After this operation, 15.7 MB disk space will be freed. 103s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x perl-base s390x 5.38.2-3.2 [1961 kB] 103s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgdbm6t64 s390x 1.23-5.1 [36.4 kB] 103s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgdbm-compat4t64 s390x 1.23-5.1 [6880 B] 103s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x console-setup-linux all 1.226ubuntu1 [1880 kB] 103s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x console-setup all 1.226ubuntu1 [110 kB] 103s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x keyboard-configuration all 1.226ubuntu1 [212 kB] 103s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 104s Preconfiguring packages ... 104s Fetched 7316 kB in 1s (6966 kB/s) 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51779 files and directories currently installed.) 104s Removing dpkg-dev (1.22.4ubuntu5) ... 104s Removing libdpkg-perl (1.22.4ubuntu5) ... 104s Removing sysconfig-hardware (0.0.14ubuntu2) ... 105s Removing s390-tools (2.31.0-0ubuntu1) ... 105s Removing perl (5.38.2-3) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50940 files and directories currently installed.) 105s Preparing to unpack .../perl-base_5.38.2-3.2_s390x.deb ... 105s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 105s Setting up perl-base (5.38.2-3.2) ... 105s dpkg: libgdbm6:s390x: dependency problems, but removing anyway as you requested: 105s python3-gdbm:s390x depends on libgdbm6 (>= 1.16). 105s man-db depends on libgdbm6 (>= 1.16). 105s libperl5.38:s390x depends on libgdbm6 (>= 1.21). 105s libgdbm-compat4:s390x depends on libgdbm6 (>= 1.16). 105s 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50940 files and directories currently installed.) 105s Removing libgdbm6:s390x (1.23-5) ... 105s Selecting previously unselected package libgdbm6t64:s390x. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50935 files and directories currently installed.) 105s Preparing to unpack .../libgdbm6t64_1.23-5.1_s390x.deb ... 105s Unpacking libgdbm6t64:s390x (1.23-5.1) ... 105s dpkg: libgdbm-compat4:s390x: dependency problems, but removing anyway as you requested: 105s libperl5.38:s390x depends on libgdbm-compat4 (>= 1.18-3). 105s 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50941 files and directories currently installed.) 105s Removing libgdbm-compat4:s390x (1.23-5) ... 105s Selecting previously unselected package libgdbm-compat4t64:s390x. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50936 files and directories currently installed.) 105s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_s390x.deb ... 105s Unpacking libgdbm-compat4t64:s390x (1.23-5.1) ... 106s Preparing to unpack .../console-setup-linux_1.226ubuntu1_all.deb ... 106s Unpacking console-setup-linux (1.226ubuntu1) over (1.223ubuntu2) ... 106s Preparing to unpack .../console-setup_1.226ubuntu1_all.deb ... 106s Unpacking console-setup (1.226ubuntu1) over (1.223ubuntu2) ... 106s Preparing to unpack .../keyboard-configuration_1.226ubuntu1_all.deb ... 106s Unpacking keyboard-configuration (1.226ubuntu1) over (1.223ubuntu2) ... 106s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... 106s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 106s Setting up libgdbm6t64:s390x (1.23-5.1) ... 106s Setting up libgdbm-compat4t64:s390x (1.23-5.1) ... 106s Setting up perl-modules-5.38 (5.38.2-3.2) ... 106s Setting up keyboard-configuration (1.226ubuntu1) ... 109s Your console font configuration will be updated the next time your system 109s boots. If you want to update it now, run 'setupcon' from a virtual console. 109s update-initramfs: deferring update (trigger activated) 109s Setting up console-setup-linux (1.226ubuntu1) ... 109s Setting up console-setup (1.226ubuntu1) ... 109s update-initramfs: deferring update (trigger activated) 109s Processing triggers for libc-bin (2.39-0ubuntu2) ... 109s Processing triggers for man-db (2.12.0-3) ... 110s Processing triggers for initramfs-tools (0.142ubuntu20) ... 110s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 110s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s The following packages will be REMOVED: 114s fuse3* libfuse3-3* libgdbm-compat4t64* libperl5.38* lto-disabled-list* make* 114s perl-modules-5.38* s390-tools-data* s390-tools-signed* 114s 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. 114s After this operation, 50.6 MB disk space will be freed. 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50942 files and directories currently installed.) 114s Removing fuse3 (3.14.0-5) ... 114s update-initramfs: deferring update (trigger activated) 114s Removing libfuse3-3:s390x (3.14.0-5) ... 114s Removing libperl5.38:s390x (5.38.2-3) ... 114s Removing libgdbm-compat4t64:s390x (1.23-5.1) ... 114s Removing lto-disabled-list (47) ... 114s Removing make (4.3-4.1build1) ... 114s Removing perl-modules-5.38 (5.38.2-3.2) ... 114s Removing s390-tools-data (2.31.0-0ubuntu1) ... 114s Removing s390-tools-signed (2.31.0-0ubuntu1) ... 115s Processing triggers for libc-bin (2.39-0ubuntu2) ... 115s Processing triggers for man-db (2.12.0-3) ... 115s Processing triggers for initramfs-tools (0.142ubuntu20) ... 115s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 115s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48945 files and directories currently installed.) 118s Purging configuration files for fuse3 (3.14.0-5) ... 119s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 119s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 119s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 119s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 121s Reading package lists... 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s Calculating upgrade... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [00:33:25]: rebooting testbed after setup commands that affected boot 158s autopkgtest [00:34:00]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 160s autopkgtest [00:34:02]: @@@@@@@@@@@@@@@@@@@@ apt-source kmer 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 170s Starting pkgProblemResolver with broken count: 0 170s Starting 2 pkgProblemResolver with broken count: 0 170s Done 171s The following additional packages will be installed: 171s dpkg-dev libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64 171s lto-disabled-list make perl perl-modules-5.38 171s Suggested packages: 171s debian-keyring gcc | c-compiler git bzr make-doc perl-doc 171s libterm-readline-gnu-perl | libterm-readline-perl-perl 171s libtap-harness-archive-perl 171s Recommended packages: 171s build-essential gcc | c-compiler fakeroot libalgorithm-merge-perl 171s libfile-fcntllock-perl 171s The following packages will be REMOVED: 171s libdb5.3 171s The following NEW packages will be installed: 171s autopkgtest-satdep dpkg-dev libdb5.3t64 libdpkg-perl libgdbm-compat4t64 171s libperl5.38t64 lto-disabled-list make perl perl-modules-5.38 171s 0 upgraded, 10 newly installed, 1 to remove and 0 not upgraded. 171s Need to get 7542 kB/10.7 MB of archives. 171s After this operation, 54.4 MB of additional disk space will be used. 171s Get:1 /tmp/autopkgtest.4n4lXH/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 171s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdb5.3t64 s390x 5.3.28+dfsg2-5build1 [763 kB] 171s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libperl5.38t64 s390x 5.38.2-3.2 [5007 kB] 172s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x perl s390x 5.38.2-3.2 [231 kB] 172s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libdpkg-perl all 1.22.4ubuntu5 [268 kB] 172s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x make s390x 4.3-4.1build1 [182 kB] 172s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x lto-disabled-list all 47 [12.4 kB] 172s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x dpkg-dev all 1.22.4ubuntu5 [1078 kB] 172s Fetched 7542 kB in 1s (7347 kB/s) 172s dpkg: libdb5.3:s390x: dependency problems, but removing anyway as you requested: 172s libsasl2-modules-db:s390x depends on libdb5.3. 172s libpython3.12-stdlib:s390x depends on libdb5.3. 172s libpam-modules:s390x depends on libdb5.3. 172s iproute2 depends on libdb5.3. 172s apt-utils depends on libdb5.3. 172s 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48944 files and directories currently installed.) 172s Removing libdb5.3:s390x (5.3.28+dfsg2-4) ... 172s Selecting previously unselected package libdb5.3t64:s390x. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48938 files and directories currently installed.) 172s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-5build1_s390x.deb ... 172s Unpacking libdb5.3t64:s390x (5.3.28+dfsg2-5build1) ... 172s Setting up libdb5.3t64:s390x (5.3.28+dfsg2-5build1) ... 172s Selecting previously unselected package perl-modules-5.38. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48944 files and directories currently installed.) 172s Preparing to unpack .../0-perl-modules-5.38_5.38.2-3.2_all.deb ... 172s Unpacking perl-modules-5.38 (5.38.2-3.2) ... 173s Selecting previously unselected package libgdbm-compat4t64:s390x. 173s Preparing to unpack .../1-libgdbm-compat4t64_1.23-5.1_s390x.deb ... 173s Unpacking libgdbm-compat4t64:s390x (1.23-5.1) ... 173s Selecting previously unselected package libperl5.38t64:s390x. 173s Preparing to unpack .../2-libperl5.38t64_5.38.2-3.2_s390x.deb ... 173s Unpacking libperl5.38t64:s390x (5.38.2-3.2) ... 173s Selecting previously unselected package perl. 173s Preparing to unpack .../3-perl_5.38.2-3.2_s390x.deb ... 173s Unpacking perl (5.38.2-3.2) ... 173s Selecting previously unselected package libdpkg-perl. 173s Preparing to unpack .../4-libdpkg-perl_1.22.4ubuntu5_all.deb ... 173s Unpacking libdpkg-perl (1.22.4ubuntu5) ... 173s Selecting previously unselected package make. 173s Preparing to unpack .../5-make_4.3-4.1build1_s390x.deb ... 173s Unpacking make (4.3-4.1build1) ... 173s Selecting previously unselected package lto-disabled-list. 173s Preparing to unpack .../6-lto-disabled-list_47_all.deb ... 173s Unpacking lto-disabled-list (47) ... 173s Selecting previously unselected package dpkg-dev. 173s Preparing to unpack .../7-dpkg-dev_1.22.4ubuntu5_all.deb ... 173s Unpacking dpkg-dev (1.22.4ubuntu5) ... 173s Selecting previously unselected package autopkgtest-satdep. 173s Preparing to unpack .../8-1-autopkgtest-satdep.deb ... 173s Unpacking autopkgtest-satdep (0) ... 173s Setting up lto-disabled-list (47) ... 173s Setting up libgdbm-compat4t64:s390x (1.23-5.1) ... 173s Setting up make (4.3-4.1build1) ... 173s Setting up perl-modules-5.38 (5.38.2-3.2) ... 173s Setting up libperl5.38t64:s390x (5.38.2-3.2) ... 173s Setting up perl (5.38.2-3.2) ... 173s Setting up libdpkg-perl (1.22.4ubuntu5) ... 173s Setting up dpkg-dev (1.22.4ubuntu5) ... 173s Setting up autopkgtest-satdep (0) ... 173s Processing triggers for man-db (2.12.0-3) ... 174s Processing triggers for libc-bin (2.39-0ubuntu2) ... 178s (Reading database ... 51489 files and directories currently installed.) 178s Removing autopkgtest-satdep (0) ... 180s Get:1 http://ftpmaster.internal/ubuntu noble/universe kmer 0~20150903+r2013-8build4 (dsc) [2385 B] 180s Get:2 http://ftpmaster.internal/ubuntu noble/universe kmer 0~20150903+r2013-8build4 (tar) [1252 kB] 180s Get:3 http://ftpmaster.internal/ubuntu noble/universe kmer 0~20150903+r2013-8build4 (diff) [2380 kB] 180s gpgv: Signature made Fri Jan 19 19:49:17 2024 UTC 180s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 180s gpgv: Can't check signature: No public key 180s dpkg-source: warning: cannot verify inline signature for ./kmer_0~20150903+r2013-8build4.dsc: no acceptable signature found 180s autopkgtest [00:34:22]: testing package kmer version 0~20150903+r2013-8build4 181s autopkgtest [00:34:23]: build not needed 185s autopkgtest [00:34:27]: test sim4db-unit-test: preparing testbed 193s Reading package lists... 193s Building dependency tree... 193s Reading state information... 194s Starting pkgProblemResolver with broken count: 0 194s Starting 2 pkgProblemResolver with broken count: 0 194s Done 194s The following additional packages will be installed: 194s adwaita-icon-theme aglfn at-spi2-common atac dconf-gsettings-backend 194s dconf-service fontconfig fontconfig-config fonts-dejavu-core 194s fonts-dejavu-mono gnuplot gnuplot-data gnuplot-qt gtk-update-icon-cache 194s hicolor-icon-theme humanity-icon-theme kmer kmer-examples leaff 194s libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0 libavahi-client3 194s libavahi-common-data libavahi-common3 libcairo-gobject2 libcairo2 libcolord2 194s libcups2 libdatrie1 libdconf1 libdeflate0 libdouble-conversion3 194s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libegl-mesa0 libegl1 libepoxy0 194s libfile-which-perl libfontconfig1 libfreetype6 libgbm1 libgd3 194s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri 194s libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk-3-0 194s libgtk-3-common libharfbuzz0b libice6 libinput-bin libinput10 libjbig0 194s libjpeg-turbo8 libjpeg8 libkmer-dev liblcms2-2 libllvm17 liblua5.4-0 194s libmd4c0 libmeryl-dev libmtdev1 libnotify4 libpango-1.0-0 194s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-16-0 libpcre2-32-0 194s libpixman-1-0 libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 194s libqt5printsupport5 libqt5svg5 libqt5widgets5 libsharpyuv0 libsm6 194s libthai-data libthai0 libtiff6 libvulkan1 libwacom-common libwacom9 194s libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 194s libwebp7 libwxbase3.2-1 libwxgtk3.2-1 libx11-xcb1 libxcb-dri2-0 194s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 194s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 194s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 194s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 libxcursor1 194s libxdamage1 libxfixes3 libxi6 libxinerama1 libxkbcommon-x11-0 libxpm4 194s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 meryl sim4db 194s ubuntu-mono x11-common 194s Suggested packages: 194s gnuplot-doc colord cups-common libgd-tools gvfs liblcms2-utils 194s notification-daemon qgnomeplatform-qt5 qt5-image-formats-plugins 194s libwacom-bin gridengine-client 194s Recommended packages: 194s librsvg2-common at-spi2-core libgdk-pixbuf2.0-bin libgl1-amber-dri 194s libgtk-3-bin qttranslations5-l10n qt5-gtk-platformtheme qtwayland5 194s mesa-vulkan-drivers | vulkan-icd 194s The following NEW packages will be installed: 194s adwaita-icon-theme aglfn at-spi2-common atac autopkgtest-satdep 194s dconf-gsettings-backend dconf-service fontconfig fontconfig-config 194s fonts-dejavu-core fonts-dejavu-mono gnuplot gnuplot-data gnuplot-qt 194s gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme kmer 194s kmer-examples leaff libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0 194s libavahi-client3 libavahi-common-data libavahi-common3 libcairo-gobject2 194s libcairo2 libcolord2 libcups2 libdatrie1 libdconf1 libdeflate0 194s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 194s libegl-mesa0 libegl1 libepoxy0 libfile-which-perl libfontconfig1 194s libfreetype6 libgbm1 libgd3 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 194s libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 194s libgraphite2-3 libgtk-3-0 libgtk-3-common libharfbuzz0b libice6 libinput-bin 194s libinput10 libjbig0 libjpeg-turbo8 libjpeg8 libkmer-dev liblcms2-2 libllvm17 194s liblua5.4-0 libmd4c0 libmeryl-dev libmtdev1 libnotify4 libpango-1.0-0 194s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-16-0 libpcre2-32-0 194s libpixman-1-0 libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 194s libqt5printsupport5 libqt5svg5 libqt5widgets5 libsharpyuv0 libsm6 194s libthai-data libthai0 libtiff6 libvulkan1 libwacom-common libwacom9 194s libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 194s libwebp7 libwxbase3.2-1 libwxgtk3.2-1 libx11-xcb1 libxcb-dri2-0 194s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 194s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 194s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 194s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 libxcursor1 194s libxdamage1 libxfixes3 libxi6 libxinerama1 libxkbcommon-x11-0 libxpm4 194s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 meryl sim4db 194s ubuntu-mono x11-common 194s 0 upgraded, 135 newly installed, 0 to remove and 0 not upgraded. 194s Need to get 74.9 MB/74.9 MB of archives. 194s After this operation, 338 MB of additional disk space will be used. 194s Get:1 /tmp/autopkgtest.4n4lXH/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [744 B] 194s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 194s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 195s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 195s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 195s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 195s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 195s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 195s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 195s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libgdk-pixbuf-2.0-0 s390x 2.42.10+dfsg-3 [152 kB] 195s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x gtk-update-icon-cache s390x 3.24.40-2ubuntu1 [51.0 kB] 195s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x hicolor-icon-theme all 0.17-2 [9976 B] 195s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x humanity-icon-theme all 0.6.16 [1282 kB] 195s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-mono all 24.04-0ubuntu1 [151 kB] 195s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x adwaita-icon-theme all 46~rc-1 [723 kB] 195s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x at-spi2-common all 2.50.0-1 [7864 B] 196s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libfile-which-perl all 1.27-2 [12.5 kB] 196s Get:18 http://ftpmaster.internal/ubuntu noble/universe s390x leaff s390x 0~20150903+r2013-8build4 [65.5 kB] 196s Get:19 http://ftpmaster.internal/ubuntu noble/universe s390x meryl s390x 0~20150903+r2013-8build4 [193 kB] 196s Get:20 http://ftpmaster.internal/ubuntu noble/universe s390x aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB] 196s Get:21 http://ftpmaster.internal/ubuntu noble/universe s390x gnuplot-data all 5.4.4+dfsg1-2build1 [74.6 kB] 196s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 196s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 196s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 196s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 196s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 196s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 196s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 196s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 196s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 196s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 196s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] 196s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libgd3 s390x 2.3.3-9ubuntu1 [127 kB] 196s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x liblua5.4-0 s390x 5.4.6-3 [179 kB] 196s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 196s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 196s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 196s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 196s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 196s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 196s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 196s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 196s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 196s Get:44 http://ftpmaster.internal/ubuntu noble/universe s390x libdouble-conversion3 s390x 3.3.0-1 [39.6 kB] 196s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB] 196s Get:46 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5core5a s390x 5.15.12+dfsg-3ubuntu1 [2258 kB] 197s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libglvnd0 s390x 1.7.0-1 [106 kB] 197s Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-server0 s390x 1.22.0-2.1 [34.9 kB] 197s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-randr0 s390x 1.15-1 [19.0 kB] 197s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libgbm1 s390x 24.0.1-1ubuntu1 [44.0 kB] 197s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libglapi-mesa s390x 24.0.1-1ubuntu1 [68.7 kB] 197s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-client0 s390x 1.22.0-2.1 [26.1 kB] 197s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libx11-xcb1 s390x 2:1.8.7-1 [7778 B] 197s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri2-0 s390x 1.15-1 [7426 B] 197s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-dri3-0 s390x 1.15-1 [7270 B] 197s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-present0 s390x 1.15-1 [5752 B] 197s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-sync1 s390x 1.15-1 [9392 B] 197s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xfixes0 s390x 1.15-1 [10.5 kB] 197s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libxshmfence1 s390x 1.3-1build4 [5334 B] 197s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libegl-mesa0 s390x 24.0.1-1ubuntu1 [123 kB] 197s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libegl1 s390x 1.7.0-1 [30.9 kB] 197s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-glx0 s390x 1.15-1 [25.8 kB] 197s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libxfixes3 s390x 1:6.0.0-2 [10.6 kB] 197s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxxf86vm1 s390x 1:1.1.4-1build3 [9900 B] 197s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libvulkan1 s390x 1.3.275.0-1 [155 kB] 197s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-amdgpu1 s390x 2.4.120-2 [21.1 kB] 197s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-nouveau2 s390x 2.4.120-2 [18.5 kB] 197s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libdrm-radeon1 s390x 2.4.120-2 [22.7 kB] 197s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libllvm17 s390x 1:17.0.6-5build1 [31.2 MB] 199s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libgl1-mesa-dri s390x 24.0.1-1ubuntu1 [7184 kB] 199s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libglx-mesa0 s390x 24.0.1-1ubuntu1 [182 kB] 199s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libglx0 s390x 1.7.0-1 [31.4 kB] 199s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libgl1 s390x 1.7.0-1 [137 kB] 199s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 199s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 199s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libmtdev1 s390x 1.1.6-1build4 [14.6 kB] 199s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libwacom-common all 2.10.0-1 [63.3 kB] 199s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libwacom9 s390x 2.10.0-1 [24.2 kB] 199s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libinput-bin s390x 1.25.0-1 [22.0 kB] 199s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libinput10 s390x 1.25.0-1 [136 kB] 199s Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libmd4c0 s390x 0.4.8-1 [43.6 kB] 199s Get:82 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5dbus5 s390x 5.15.12+dfsg-3ubuntu1 [244 kB] 199s Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5network5 s390x 5.15.12+dfsg-3ubuntu1 [798 kB] 199s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 199s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-icccm4 s390x 0.4.1-1.1build2 [11.5 kB] 199s Get:86 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-util1 s390x 0.4.0-1build2 [11.2 kB] 199s Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-image0 s390x 0.4.0-2 [11.8 kB] 199s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-keysyms1 s390x 0.4.0-1build3 [8780 B] 199s Get:89 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render-util0 s390x 0.3.9-1build3 [10.1 kB] 199s Get:90 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shape0 s390x 1.15-1 [6146 B] 199s Get:91 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xinerama0 s390x 1.15-1 [5382 B] 199s Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xinput0 s390x 1.15-1 [34.6 kB] 200s Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-xkb1 s390x 1.15-1 [32.3 kB] 200s Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libxkbcommon-x11-0 s390x 1.6.0-1 [14.8 kB] 200s Get:95 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5gui5 s390x 5.15.12+dfsg-3ubuntu1 [4203 kB] 200s Get:96 http://ftpmaster.internal/ubuntu noble/main s390x libavahi-common-data s390x 0.8-13ubuntu2 [29.5 kB] 200s Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libavahi-common3 s390x 0.8-13ubuntu2 [23.8 kB] 200s Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libavahi-client3 s390x 0.8-13ubuntu2 [26.7 kB] 200s Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libcups2 s390x 2.4.6-0ubuntu3 [277 kB] 200s Get:100 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5widgets5 s390x 5.15.12+dfsg-3ubuntu1 [2753 kB] 200s Get:101 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5printsupport5 s390x 5.15.12+dfsg-3ubuntu1 [220 kB] 200s Get:102 http://ftpmaster.internal/ubuntu noble/universe s390x libqt5svg5 s390x 5.15.12-1 [192 kB] 200s Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB] 200s Get:104 http://ftpmaster.internal/ubuntu noble/universe s390x libwxbase3.2-1 s390x 3.2.4+dfsg-3 [925 kB] 200s Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libatk1.0-0 s390x 2.50.0-1 [54.4 kB] 200s Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] 200s Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libatspi2.0-0 s390x 2.50.0-1 [77.9 kB] 200s Get:108 http://ftpmaster.internal/ubuntu noble/main s390x libatk-bridge2.0-0 s390x 2.50.0-1 [65.3 kB] 200s Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libcairo-gobject2 s390x 1.18.0-1 [126 kB] 200s Get:110 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB] 200s Get:111 http://ftpmaster.internal/ubuntu noble/main s390x libcolord2 s390x 1.4.7-1 [151 kB] 200s Get:112 http://ftpmaster.internal/ubuntu noble/main s390x libepoxy0 s390x 1.5.10-1 [232 kB] 201s Get:113 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-cursor0 s390x 1.22.0-2.1 [11.1 kB] 201s Get:114 http://ftpmaster.internal/ubuntu noble/main s390x libwayland-egl1 s390x 1.22.0-2.1 [5452 B] 201s Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libxcomposite1 s390x 1:0.4.5-1build2 [6952 B] 201s Get:116 http://ftpmaster.internal/ubuntu noble/main s390x libxcursor1 s390x 1:1.2.1-1 [22.2 kB] 201s Get:117 http://ftpmaster.internal/ubuntu noble/main s390x libxdamage1 s390x 1:1.1.6-1 [5810 B] 201s Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libxinerama1 s390x 2:1.1.4-3 [7110 B] 201s Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libxrandr2 s390x 2:1.5.2-2 [19.5 kB] 201s Get:120 http://ftpmaster.internal/ubuntu noble/main s390x libdconf1 s390x 0.40.0-4 [38.9 kB] 201s Get:121 http://ftpmaster.internal/ubuntu noble/main s390x dconf-service s390x 0.40.0-4 [27.0 kB] 201s Get:122 http://ftpmaster.internal/ubuntu noble/main s390x dconf-gsettings-backend s390x 0.40.0-4 [21.6 kB] 201s Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libgtk-3-common all 3.24.40-2ubuntu1 [1200 kB] 201s Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libgtk-3-0 s390x 3.24.40-2ubuntu1 [2952 kB] 201s Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libnotify4 s390x 0.8.3-1 [25.0 kB] 201s Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libxtst6 s390x 2:1.2.3-1.1 [13.4 kB] 201s Get:127 http://ftpmaster.internal/ubuntu noble/universe s390x libwxgtk3.2-1 s390x 3.2.4+dfsg-3 [4739 kB] 201s Get:128 http://ftpmaster.internal/ubuntu noble/universe s390x gnuplot-qt s390x 5.4.4+dfsg1-2build1 [1099 kB] 201s Get:129 http://ftpmaster.internal/ubuntu noble/universe s390x gnuplot all 5.4.4+dfsg1-2build1 [3584 B] 201s Get:130 http://ftpmaster.internal/ubuntu noble/universe s390x atac s390x 0~20150903+r2013-8build4 [344 kB] 201s Get:131 http://ftpmaster.internal/ubuntu noble/universe s390x sim4db s390x 0~20150903+r2013-8build4 [516 kB] 201s Get:132 http://ftpmaster.internal/ubuntu noble/universe s390x kmer all 0~20150903+r2013-8build4 [3840 B] 201s Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x kmer-examples all 0~20150903+r2013-8build4 [2351 kB] 201s Get:134 http://ftpmaster.internal/ubuntu noble/universe s390x libmeryl-dev s390x 0~20150903+r2013-8build4 [55.8 kB] 201s Get:135 http://ftpmaster.internal/ubuntu noble/universe s390x libkmer-dev s390x 0~20150903+r2013-8build4 [210 kB] 202s Fetched 74.9 MB in 7s (10.5 MB/s) 202s Selecting previously unselected package libgdk-pixbuf2.0-common. 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51489 files and directories currently installed.) 202s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 202s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 202s Selecting previously unselected package libjpeg-turbo8:s390x. 202s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 202s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 202s Selecting previously unselected package libjpeg8:s390x. 202s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_s390x.deb ... 202s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 202s Selecting previously unselected package libdeflate0:s390x. 202s Preparing to unpack .../003-libdeflate0_1.19-1_s390x.deb ... 202s Unpacking libdeflate0:s390x (1.19-1) ... 202s Selecting previously unselected package libjbig0:s390x. 202s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 202s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 202s Selecting previously unselected package libsharpyuv0:s390x. 202s Preparing to unpack .../005-libsharpyuv0_1.3.2-0.4_s390x.deb ... 202s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 202s Selecting previously unselected package libwebp7:s390x. 202s Preparing to unpack .../006-libwebp7_1.3.2-0.4_s390x.deb ... 202s Unpacking libwebp7:s390x (1.3.2-0.4) ... 202s Selecting previously unselected package libtiff6:s390x. 202s Preparing to unpack .../007-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 202s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 202s Selecting previously unselected package libgdk-pixbuf-2.0-0:s390x. 202s Preparing to unpack .../008-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_s390x.deb ... 202s Unpacking libgdk-pixbuf-2.0-0:s390x (2.42.10+dfsg-3) ... 202s Selecting previously unselected package gtk-update-icon-cache. 202s Preparing to unpack .../009-gtk-update-icon-cache_3.24.40-2ubuntu1_s390x.deb ... 202s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 202s Selecting previously unselected package hicolor-icon-theme. 202s Preparing to unpack .../010-hicolor-icon-theme_0.17-2_all.deb ... 202s Unpacking hicolor-icon-theme (0.17-2) ... 203s Selecting previously unselected package humanity-icon-theme. 203s Preparing to unpack .../011-humanity-icon-theme_0.6.16_all.deb ... 203s Unpacking humanity-icon-theme (0.6.16) ... 203s Selecting previously unselected package ubuntu-mono. 203s Preparing to unpack .../012-ubuntu-mono_24.04-0ubuntu1_all.deb ... 203s Unpacking 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204s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 204s Selecting previously unselected package libcairo2:s390x. 204s Preparing to unpack .../029-libcairo2_1.18.0-1_s390x.deb ... 204s Unpacking libcairo2:s390x (1.18.0-1) ... 204s Selecting previously unselected package libxpm4:s390x. 204s Preparing to unpack .../030-libxpm4_1%3a3.5.17-1_s390x.deb ... 204s Unpacking libxpm4:s390x (1:3.5.17-1) ... 204s Selecting previously unselected package libgd3:s390x. 204s Preparing to unpack .../031-libgd3_2.3.3-9ubuntu1_s390x.deb ... 204s Unpacking libgd3:s390x (2.3.3-9ubuntu1) ... 204s Selecting previously unselected package liblua5.4-0:s390x. 204s Preparing to unpack .../032-liblua5.4-0_5.4.6-3_s390x.deb ... 204s Unpacking liblua5.4-0:s390x (5.4.6-3) ... 204s Selecting previously unselected package fontconfig. 204s Preparing to unpack .../033-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 204s Unpacking fontconfig (2.15.0-1ubuntu1) ... 204s Selecting previously unselected package libgraphite2-3:s390x. 204s Preparing to unpack .../034-libgraphite2-3_1.3.14-2_s390x.deb ... 204s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 204s Selecting previously unselected package libharfbuzz0b:s390x. 204s Preparing to unpack .../035-libharfbuzz0b_8.3.0-2_s390x.deb ... 204s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 204s Selecting previously unselected package libthai-data. 204s Preparing to unpack .../036-libthai-data_0.1.29-2_all.deb ... 204s Unpacking libthai-data (0.1.29-2) ... 205s Selecting previously unselected package libdatrie1:s390x. 205s Preparing to unpack .../037-libdatrie1_0.2.13-3_s390x.deb ... 205s Unpacking libdatrie1:s390x (0.2.13-3) ... 205s Selecting previously unselected package libthai0:s390x. 205s Preparing to unpack .../038-libthai0_0.1.29-2_s390x.deb ... 205s Unpacking libthai0:s390x (0.1.29-2) ... 205s Selecting previously unselected package libpango-1.0-0:s390x. 205s Preparing to unpack .../039-libpango-1.0-0_1.51.0+ds-4_s390x.deb ... 205s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ... 205s Selecting previously unselected package libpangoft2-1.0-0:s390x. 205s Preparing to unpack .../040-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ... 205s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 205s Selecting previously unselected package libpangocairo-1.0-0:s390x. 205s Preparing to unpack .../041-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 205s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 205s Selecting previously unselected package libdouble-conversion3:s390x. 205s Preparing to unpack .../042-libdouble-conversion3_3.3.0-1_s390x.deb ... 205s Unpacking libdouble-conversion3:s390x (3.3.0-1) ... 205s Selecting previously unselected package libpcre2-16-0:s390x. 205s Preparing to unpack .../043-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ... 205s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ... 205s Selecting previously unselected package libqt5core5a:s390x. 205s Preparing to unpack .../044-libqt5core5a_5.15.12+dfsg-3ubuntu1_s390x.deb ... 205s Unpacking libqt5core5a:s390x (5.15.12+dfsg-3ubuntu1) ... 205s Selecting previously unselected package libglvnd0:s390x. 205s Preparing to unpack .../045-libglvnd0_1.7.0-1_s390x.deb ... 205s Unpacking libglvnd0:s390x (1.7.0-1) ... 205s Selecting previously unselected package libwayland-server0:s390x. 205s Preparing to unpack .../046-libwayland-server0_1.22.0-2.1_s390x.deb ... 205s Unpacking libwayland-server0:s390x (1.22.0-2.1) ... 205s Selecting previously unselected package libxcb-randr0:s390x. 205s Preparing to unpack .../047-libxcb-randr0_1.15-1_s390x.deb ... 205s Unpacking libxcb-randr0:s390x (1.15-1) ... 205s Selecting previously unselected package libgbm1:s390x. 205s Preparing to unpack .../048-libgbm1_24.0.1-1ubuntu1_s390x.deb ... 205s Unpacking libgbm1:s390x (24.0.1-1ubuntu1) ... 205s Selecting previously unselected package libglapi-mesa:s390x. 205s Preparing to unpack .../049-libglapi-mesa_24.0.1-1ubuntu1_s390x.deb ... 205s Unpacking libglapi-mesa:s390x (24.0.1-1ubuntu1) ... 205s Selecting previously unselected package libwayland-client0:s390x. 205s Preparing to unpack .../050-libwayland-client0_1.22.0-2.1_s390x.deb ... 205s Unpacking libwayland-client0:s390x (1.22.0-2.1) ... 205s Selecting previously unselected package libx11-xcb1:s390x. 205s Preparing to unpack .../051-libx11-xcb1_2%3a1.8.7-1_s390x.deb ... 205s Unpacking libx11-xcb1:s390x (2:1.8.7-1) ... 205s Selecting previously unselected package libxcb-dri2-0:s390x. 205s Preparing to unpack .../052-libxcb-dri2-0_1.15-1_s390x.deb ... 205s Unpacking libxcb-dri2-0:s390x (1.15-1) ... 205s Selecting previously unselected package libxcb-dri3-0:s390x. 205s Preparing to unpack .../053-libxcb-dri3-0_1.15-1_s390x.deb ... 205s Unpacking libxcb-dri3-0:s390x (1.15-1) ... 205s Selecting previously unselected package libxcb-present0:s390x. 205s Preparing to unpack .../054-libxcb-present0_1.15-1_s390x.deb ... 205s Unpacking libxcb-present0:s390x (1.15-1) ... 205s Selecting previously unselected package libxcb-sync1:s390x. 205s Preparing to unpack .../055-libxcb-sync1_1.15-1_s390x.deb ... 205s Unpacking libxcb-sync1:s390x (1.15-1) ... 205s Selecting previously unselected package libxcb-xfixes0:s390x. 205s Preparing to unpack .../056-libxcb-xfixes0_1.15-1_s390x.deb ... 205s Unpacking libxcb-xfixes0:s390x (1.15-1) ... 205s Selecting previously unselected package libxshmfence1:s390x. 205s Preparing to unpack .../057-libxshmfence1_1.3-1build4_s390x.deb ... 205s Unpacking libxshmfence1:s390x (1.3-1build4) ... 205s Selecting previously unselected package libegl-mesa0:s390x. 205s Preparing to unpack .../058-libegl-mesa0_24.0.1-1ubuntu1_s390x.deb ... 205s Unpacking libegl-mesa0:s390x (24.0.1-1ubuntu1) ... 205s Selecting previously unselected package libegl1:s390x. 205s Preparing to unpack .../059-libegl1_1.7.0-1_s390x.deb ... 205s Unpacking libegl1:s390x (1.7.0-1) ... 205s Selecting previously unselected package libxcb-glx0:s390x. 205s Preparing to unpack .../060-libxcb-glx0_1.15-1_s390x.deb ... 205s Unpacking libxcb-glx0:s390x (1.15-1) ... 205s Selecting previously unselected package libxfixes3:s390x. 205s Preparing to unpack .../061-libxfixes3_1%3a6.0.0-2_s390x.deb ... 205s Unpacking libxfixes3:s390x (1:6.0.0-2) ... 205s Selecting previously unselected package libxxf86vm1:s390x. 205s Preparing to unpack .../062-libxxf86vm1_1%3a1.1.4-1build3_s390x.deb ... 205s Unpacking libxxf86vm1:s390x (1:1.1.4-1build3) ... 205s Selecting previously unselected package libvulkan1:s390x. 205s Preparing to unpack .../063-libvulkan1_1.3.275.0-1_s390x.deb ... 205s Unpacking libvulkan1:s390x (1.3.275.0-1) ... 205s Selecting previously unselected package libdrm-amdgpu1:s390x. 205s Preparing to unpack .../064-libdrm-amdgpu1_2.4.120-2_s390x.deb ... 205s Unpacking libdrm-amdgpu1:s390x (2.4.120-2) ... 205s Selecting previously unselected package libdrm-nouveau2:s390x. 205s Preparing to unpack .../065-libdrm-nouveau2_2.4.120-2_s390x.deb ... 205s Unpacking libdrm-nouveau2:s390x (2.4.120-2) ... 205s Selecting previously unselected package libdrm-radeon1:s390x. 205s Preparing to unpack .../066-libdrm-radeon1_2.4.120-2_s390x.deb ... 205s Unpacking libdrm-radeon1:s390x (2.4.120-2) ... 205s Selecting previously unselected package libllvm17:s390x. 205s Preparing to unpack .../067-libllvm17_1%3a17.0.6-5build1_s390x.deb ... 205s Unpacking libllvm17:s390x (1:17.0.6-5build1) ... 207s Selecting previously unselected package libgl1-mesa-dri:s390x. 207s Preparing to unpack .../068-libgl1-mesa-dri_24.0.1-1ubuntu1_s390x.deb ... 207s Unpacking libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ... 207s Selecting previously unselected package libglx-mesa0:s390x. 207s Preparing to unpack .../069-libglx-mesa0_24.0.1-1ubuntu1_s390x.deb ... 207s Unpacking libglx-mesa0:s390x (24.0.1-1ubuntu1) ... 207s Selecting previously unselected package libglx0:s390x. 207s Preparing to unpack .../070-libglx0_1.7.0-1_s390x.deb ... 207s Unpacking libglx0:s390x (1.7.0-1) ... 207s Selecting previously unselected package libgl1:s390x. 207s Preparing to unpack .../071-libgl1_1.7.0-1_s390x.deb ... 207s Unpacking libgl1:s390x (1.7.0-1) ... 207s Selecting previously unselected package x11-common. 207s Preparing to unpack .../072-x11-common_1%3a7.7+23ubuntu2_all.deb ... 207s Unpacking x11-common (1:7.7+23ubuntu2) ... 207s Selecting previously unselected package libice6:s390x. 207s Preparing to unpack .../073-libice6_2%3a1.0.10-1build2_s390x.deb ... 207s Unpacking libice6:s390x (2:1.0.10-1build2) ... 207s Selecting previously unselected package libmtdev1:s390x. 207s Preparing to unpack .../074-libmtdev1_1.1.6-1build4_s390x.deb ... 207s Unpacking libmtdev1:s390x (1.1.6-1build4) ... 207s Selecting previously unselected package libwacom-common. 207s Preparing to unpack .../075-libwacom-common_2.10.0-1_all.deb ... 207s Unpacking libwacom-common (2.10.0-1) ... 207s Selecting previously unselected package libwacom9:s390x. 207s Preparing to unpack .../076-libwacom9_2.10.0-1_s390x.deb ... 207s Unpacking libwacom9:s390x (2.10.0-1) ... 207s Selecting previously unselected package libinput-bin. 207s Preparing to unpack .../077-libinput-bin_1.25.0-1_s390x.deb ... 207s Unpacking libinput-bin (1.25.0-1) ... 207s Selecting previously unselected package libinput10:s390x. 207s Preparing to unpack .../078-libinput10_1.25.0-1_s390x.deb ... 207s Unpacking libinput10:s390x (1.25.0-1) ... 207s Selecting previously unselected package libmd4c0:s390x. 207s Preparing to unpack .../079-libmd4c0_0.4.8-1_s390x.deb ... 207s Unpacking libmd4c0:s390x (0.4.8-1) ... 207s Selecting previously unselected package libqt5dbus5:s390x. 207s Preparing to unpack .../080-libqt5dbus5_5.15.12+dfsg-3ubuntu1_s390x.deb ... 207s Unpacking libqt5dbus5:s390x (5.15.12+dfsg-3ubuntu1) ... 207s Selecting previously unselected package libqt5network5:s390x. 207s Preparing to unpack .../081-libqt5network5_5.15.12+dfsg-3ubuntu1_s390x.deb ... 207s Unpacking libqt5network5:s390x (5.15.12+dfsg-3ubuntu1) ... 207s Selecting previously unselected package libsm6:s390x. 207s Preparing to unpack .../082-libsm6_2%3a1.2.3-1build2_s390x.deb ... 207s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 207s Selecting previously unselected package libxcb-icccm4:s390x. 207s Preparing to unpack .../083-libxcb-icccm4_0.4.1-1.1build2_s390x.deb ... 207s Unpacking libxcb-icccm4:s390x (0.4.1-1.1build2) ... 207s Selecting previously unselected package libxcb-util1:s390x. 207s Preparing to unpack .../084-libxcb-util1_0.4.0-1build2_s390x.deb ... 207s Unpacking libxcb-util1:s390x (0.4.0-1build2) ... 207s Selecting previously unselected package libxcb-image0:s390x. 207s Preparing to unpack .../085-libxcb-image0_0.4.0-2_s390x.deb ... 207s Unpacking libxcb-image0:s390x (0.4.0-2) ... 207s Selecting previously unselected package libxcb-keysyms1:s390x. 207s Preparing to unpack .../086-libxcb-keysyms1_0.4.0-1build3_s390x.deb ... 207s Unpacking libxcb-keysyms1:s390x (0.4.0-1build3) ... 207s Selecting previously unselected package libxcb-render-util0:s390x. 207s Preparing to unpack .../087-libxcb-render-util0_0.3.9-1build3_s390x.deb ... 207s Unpacking libxcb-render-util0:s390x (0.3.9-1build3) ... 207s Selecting previously unselected package libxcb-shape0:s390x. 207s Preparing to unpack .../088-libxcb-shape0_1.15-1_s390x.deb ... 207s Unpacking libxcb-shape0:s390x (1.15-1) ... 207s Selecting previously unselected package libxcb-xinerama0:s390x. 207s Preparing to unpack .../089-libxcb-xinerama0_1.15-1_s390x.deb ... 207s Unpacking libxcb-xinerama0:s390x (1.15-1) ... 207s Selecting previously unselected package libxcb-xinput0:s390x. 207s Preparing to unpack .../090-libxcb-xinput0_1.15-1_s390x.deb ... 207s Unpacking libxcb-xinput0:s390x (1.15-1) ... 207s Selecting previously unselected package libxcb-xkb1:s390x. 207s Preparing to unpack .../091-libxcb-xkb1_1.15-1_s390x.deb ... 207s Unpacking libxcb-xkb1:s390x (1.15-1) ... 207s Selecting previously unselected package libxkbcommon-x11-0:s390x. 207s Preparing to unpack .../092-libxkbcommon-x11-0_1.6.0-1_s390x.deb ... 207s Unpacking libxkbcommon-x11-0:s390x (1.6.0-1) ... 207s Selecting previously unselected package libqt5gui5:s390x. 207s Preparing to unpack .../093-libqt5gui5_5.15.12+dfsg-3ubuntu1_s390x.deb ... 207s Unpacking libqt5gui5:s390x (5.15.12+dfsg-3ubuntu1) ... 208s Selecting previously unselected package libavahi-common-data:s390x. 208s Preparing to unpack .../094-libavahi-common-data_0.8-13ubuntu2_s390x.deb ... 208s Unpacking libavahi-common-data:s390x (0.8-13ubuntu2) ... 208s Selecting previously unselected package libavahi-common3:s390x. 208s Preparing to unpack .../095-libavahi-common3_0.8-13ubuntu2_s390x.deb ... 208s Unpacking libavahi-common3:s390x (0.8-13ubuntu2) ... 208s Selecting previously unselected package libavahi-client3:s390x. 208s Preparing to unpack .../096-libavahi-client3_0.8-13ubuntu2_s390x.deb ... 208s Unpacking libavahi-client3:s390x (0.8-13ubuntu2) ... 208s Selecting previously unselected package libcups2:s390x. 208s Preparing to unpack .../097-libcups2_2.4.6-0ubuntu3_s390x.deb ... 208s Unpacking libcups2:s390x (2.4.6-0ubuntu3) ... 208s Selecting previously unselected package libqt5widgets5:s390x. 208s Preparing to unpack .../098-libqt5widgets5_5.15.12+dfsg-3ubuntu1_s390x.deb ... 208s Unpacking libqt5widgets5:s390x (5.15.12+dfsg-3ubuntu1) ... 208s Selecting previously unselected package libqt5printsupport5:s390x. 208s Preparing to unpack .../099-libqt5printsupport5_5.15.12+dfsg-3ubuntu1_s390x.deb ... 208s Unpacking libqt5printsupport5:s390x (5.15.12+dfsg-3ubuntu1) ... 208s Selecting previously unselected package libqt5svg5:s390x. 208s Preparing to unpack .../100-libqt5svg5_5.15.12-1_s390x.deb ... 208s Unpacking libqt5svg5:s390x (5.15.12-1) ... 208s Selecting previously unselected package libpcre2-32-0:s390x. 208s Preparing to unpack .../101-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ... 208s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ... 208s Selecting previously unselected package libwxbase3.2-1:s390x. 208s Preparing to unpack .../102-libwxbase3.2-1_3.2.4+dfsg-3_s390x.deb ... 208s Unpacking libwxbase3.2-1:s390x (3.2.4+dfsg-3) ... 208s Selecting previously unselected package libatk1.0-0:s390x. 208s Preparing to unpack .../103-libatk1.0-0_2.50.0-1_s390x.deb ... 208s Unpacking libatk1.0-0:s390x (2.50.0-1) ... 208s Selecting previously unselected package libxi6:s390x. 208s Preparing to unpack .../104-libxi6_2%3a1.8.1-1_s390x.deb ... 208s Unpacking libxi6:s390x (2:1.8.1-1) ... 208s Selecting previously unselected package libatspi2.0-0:s390x. 208s Preparing to unpack .../105-libatspi2.0-0_2.50.0-1_s390x.deb ... 208s Unpacking libatspi2.0-0:s390x (2.50.0-1) ... 208s Selecting previously unselected package libatk-bridge2.0-0:s390x. 208s Preparing to unpack .../106-libatk-bridge2.0-0_2.50.0-1_s390x.deb ... 208s Unpacking libatk-bridge2.0-0:s390x (2.50.0-1) ... 208s Selecting previously unselected package libcairo-gobject2:s390x. 208s Preparing to unpack .../107-libcairo-gobject2_1.18.0-1_s390x.deb ... 208s Unpacking libcairo-gobject2:s390x (1.18.0-1) ... 208s Selecting previously unselected package liblcms2-2:s390x. 208s Preparing to unpack .../108-liblcms2-2_2.14-2_s390x.deb ... 208s Unpacking liblcms2-2:s390x (2.14-2) ... 208s Selecting previously unselected package libcolord2:s390x. 208s Preparing to unpack .../109-libcolord2_1.4.7-1_s390x.deb ... 208s Unpacking libcolord2:s390x (1.4.7-1) ... 208s Selecting previously unselected package libepoxy0:s390x. 208s Preparing to unpack .../110-libepoxy0_1.5.10-1_s390x.deb ... 208s Unpacking libepoxy0:s390x (1.5.10-1) ... 208s Selecting previously unselected package libwayland-cursor0:s390x. 208s Preparing to unpack .../111-libwayland-cursor0_1.22.0-2.1_s390x.deb ... 208s Unpacking libwayland-cursor0:s390x (1.22.0-2.1) ... 208s Selecting previously unselected package libwayland-egl1:s390x. 208s Preparing to unpack .../112-libwayland-egl1_1.22.0-2.1_s390x.deb ... 208s Unpacking libwayland-egl1:s390x (1.22.0-2.1) ... 208s Selecting previously unselected package libxcomposite1:s390x. 208s Preparing to unpack .../113-libxcomposite1_1%3a0.4.5-1build2_s390x.deb ... 208s Unpacking libxcomposite1:s390x (1:0.4.5-1build2) ... 208s Selecting previously unselected package libxcursor1:s390x. 208s Preparing to unpack .../114-libxcursor1_1%3a1.2.1-1_s390x.deb ... 208s Unpacking libxcursor1:s390x (1:1.2.1-1) ... 208s Selecting previously unselected package libxdamage1:s390x. 208s Preparing to unpack .../115-libxdamage1_1%3a1.1.6-1_s390x.deb ... 208s Unpacking libxdamage1:s390x (1:1.1.6-1) ... 208s Selecting previously unselected package libxinerama1:s390x. 208s Preparing to unpack .../116-libxinerama1_2%3a1.1.4-3_s390x.deb ... 208s Unpacking libxinerama1:s390x (2:1.1.4-3) ... 208s Selecting previously unselected package libxrandr2:s390x. 208s Preparing to unpack .../117-libxrandr2_2%3a1.5.2-2_s390x.deb ... 208s Unpacking libxrandr2:s390x (2:1.5.2-2) ... 208s Selecting previously unselected package libdconf1:s390x. 208s Preparing to unpack .../118-libdconf1_0.40.0-4_s390x.deb ... 208s Unpacking libdconf1:s390x (0.40.0-4) ... 208s Selecting previously unselected package dconf-service. 208s Preparing to unpack .../119-dconf-service_0.40.0-4_s390x.deb ... 208s Unpacking dconf-service (0.40.0-4) ... 208s Selecting previously unselected package dconf-gsettings-backend:s390x. 208s Preparing to unpack .../120-dconf-gsettings-backend_0.40.0-4_s390x.deb ... 208s Unpacking dconf-gsettings-backend:s390x (0.40.0-4) ... 208s Selecting previously unselected package libgtk-3-common. 208s Preparing to unpack .../121-libgtk-3-common_3.24.40-2ubuntu1_all.deb ... 208s Unpacking libgtk-3-common (3.24.40-2ubuntu1) ... 208s Selecting previously unselected package libgtk-3-0:s390x. 208s Preparing to unpack .../122-libgtk-3-0_3.24.40-2ubuntu1_s390x.deb ... 208s Unpacking libgtk-3-0:s390x (3.24.40-2ubuntu1) ... 208s Selecting previously unselected package libnotify4:s390x. 208s Preparing to unpack .../123-libnotify4_0.8.3-1_s390x.deb ... 208s Unpacking libnotify4:s390x (0.8.3-1) ... 208s Selecting previously unselected package libxtst6:s390x. 208s Preparing to unpack .../124-libxtst6_2%3a1.2.3-1.1_s390x.deb ... 208s Unpacking libxtst6:s390x (2:1.2.3-1.1) ... 208s Selecting previously unselected package libwxgtk3.2-1:s390x. 208s Preparing to unpack .../125-libwxgtk3.2-1_3.2.4+dfsg-3_s390x.deb ... 208s Unpacking libwxgtk3.2-1:s390x (3.2.4+dfsg-3) ... 209s Selecting previously unselected package gnuplot-qt. 209s Preparing to unpack .../126-gnuplot-qt_5.4.4+dfsg1-2build1_s390x.deb ... 209s Unpacking gnuplot-qt (5.4.4+dfsg1-2build1) ... 209s Selecting previously unselected package gnuplot. 209s Preparing to unpack .../127-gnuplot_5.4.4+dfsg1-2build1_all.deb ... 209s Unpacking gnuplot (5.4.4+dfsg1-2build1) ... 209s Selecting previously unselected package atac. 209s Preparing to unpack .../128-atac_0~20150903+r2013-8build4_s390x.deb ... 209s Unpacking atac (0~20150903+r2013-8build4) ... 209s Selecting previously unselected package sim4db. 209s Preparing to unpack .../129-sim4db_0~20150903+r2013-8build4_s390x.deb ... 209s Unpacking sim4db (0~20150903+r2013-8build4) ... 209s Selecting previously unselected package kmer. 209s Preparing to unpack .../130-kmer_0~20150903+r2013-8build4_all.deb ... 209s Unpacking kmer (0~20150903+r2013-8build4) ... 209s Selecting previously unselected package kmer-examples. 209s Preparing to unpack .../131-kmer-examples_0~20150903+r2013-8build4_all.deb ... 209s Unpacking kmer-examples (0~20150903+r2013-8build4) ... 209s Selecting previously unselected package libmeryl-dev. 209s Preparing to unpack .../132-libmeryl-dev_0~20150903+r2013-8build4_s390x.deb ... 209s Unpacking libmeryl-dev (0~20150903+r2013-8build4) ... 209s Selecting previously unselected package libkmer-dev. 209s Preparing to unpack .../133-libkmer-dev_0~20150903+r2013-8build4_s390x.deb ... 209s Unpacking libkmer-dev (0~20150903+r2013-8build4) ... 209s Selecting previously unselected package autopkgtest-satdep. 209s Preparing to unpack .../134-2-autopkgtest-satdep.deb ... 209s Unpacking autopkgtest-satdep (0) ... 209s Setting up libgraphite2-3:s390x (1.3.14-2) ... 209s Setting up libxcb-dri3-0:s390x (1.15-1) ... 209s Setting up liblcms2-2:s390x (2.14-2) ... 209s Setting up libpixman-1-0:s390x (0.42.2-1) ... 209s Setting up leaff (0~20150903+r2013-8build4) ... 209s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 209s Setting up libwayland-server0:s390x (1.22.0-2.1) ... 209s Setting up libx11-xcb1:s390x (2:1.8.7-1) ... 209s Setting up libfile-which-perl (1.27-2) ... 209s Setting up libdouble-conversion3:s390x (3.3.0-1) ... 209s Setting up libdrm-nouveau2:s390x (2.4.120-2) ... 209s Setting up libxdamage1:s390x (1:1.1.6-1) ... 209s Setting up libxcb-xfixes0:s390x (1.15-1) ... 209s Setting up libxpm4:s390x (1:3.5.17-1) ... 209s Setting up hicolor-icon-theme (0.17-2) ... 209s Setting up libxi6:s390x (2:1.8.1-1) ... 209s Setting up libxcb-xinput0:s390x (1.15-1) ... 209s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 209s Setting up libdatrie1:s390x (0.2.13-3) ... 209s Setting up libxcb-render0:s390x (1.15-1) ... 209s Setting up libdrm-radeon1:s390x (2.4.120-2) ... 209s Setting up libglvnd0:s390x (1.7.0-1) ... 209s Setting up libxcb-glx0:s390x (1.15-1) ... 209s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 209s Setting up libxcb-keysyms1:s390x (0.4.0-1build3) ... 209s Setting up libxcb-shape0:s390x (1.15-1) ... 209s Setting up x11-common (1:7.7+23ubuntu2) ... 209s Setting up libdeflate0:s390x (1.19-1) ... 209s Setting up libxcb-render-util0:s390x (0.3.9-1build3) ... 209s Setting up libxcb-shm0:s390x (1.15-1) ... 209s Setting up libxcb-icccm4:s390x (0.4.1-1.1build2) ... 209s Setting up libatspi2.0-0:s390x (2.50.0-1) ... 209s Setting up sim4db (0~20150903+r2013-8build4) ... 209s Setting up kmer-examples (0~20150903+r2013-8build4) ... 209s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 209s Setting up libpcre2-16-0:s390x (10.42-4ubuntu1) ... 209s Setting up libcolord2:s390x (1.4.7-1) ... 209s Setting up libxcb-util1:s390x (0.4.0-1build2) ... 209s Setting up libxxf86vm1:s390x (1:1.1.4-1build3) ... 209s Setting up libxcb-xkb1:s390x (1.15-1) ... 209s Setting up libxcb-image0:s390x (0.4.0-2) ... 209s Setting up libxcb-present0:s390x (1.15-1) ... 209s Setting up libdconf1:s390x (0.40.0-4) ... 209s Setting up libpcre2-32-0:s390x (10.42-4ubuntu1) ... 209s Setting up libxcb-xinerama0:s390x (1.15-1) ... 209s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 209s Setting up libepoxy0:s390x (1.5.10-1) ... 209s Setting up libxfixes3:s390x (1:6.0.0-2) ... 209s Setting up libxcb-sync1:s390x (1.15-1) ... 209s Setting up aglfn (1.7+git20191031.4036a9c-2) ... 209s Setting up libavahi-common-data:s390x (0.8-13ubuntu2) ... 209s Setting up libxinerama1:s390x (2:1.1.4-3) ... 209s Setting up libxkbcommon-x11-0:s390x (1.6.0-1) ... 209s Setting up fonts-dejavu-mono (2.37-8) ... 209s Setting up libxrandr2:s390x (2:1.5.2-2) ... 209s Setting up libmeryl-dev (0~20150903+r2013-8build4) ... 209s Setting up fonts-dejavu-core (2.37-8) ... 209s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 209s Setting up libqt5core5a:s390x (5.15.12+dfsg-3ubuntu1) ... 209s Setting up libglapi-mesa:s390x (24.0.1-1ubuntu1) ... 209s Setting up libmtdev1:s390x (1.1.6-1build4) ... 209s Setting up libvulkan1:s390x (1.3.275.0-1) ... 209s Setting up libwebp7:s390x (1.3.2-0.4) ... 209s Setting up libxcb-dri2-0:s390x (1.15-1) ... 209s Setting up libxshmfence1:s390x (1.3-1build4) ... 209s Setting up at-spi2-common (2.50.0-1) ... 209s Setting up libqt5dbus5:s390x (5.15.12+dfsg-3ubuntu1) ... 209s Setting up libxcb-randr0:s390x (1.15-1) ... 209s Setting up libmd4c0:s390x (0.4.8-1) ... 209s Setting up liblua5.4-0:s390x (5.4.6-3) ... 209s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 209s Setting up libthai-data (0.1.29-2) ... 209s Setting up libatk1.0-0:s390x (2.50.0-1) ... 209s Setting up libwayland-egl1:s390x (1.22.0-2.1) ... 209s Setting up meryl (0~20150903+r2013-8build4) ... 209s Setting up libllvm17:s390x (1:17.0.6-5build1) ... 209s Setting up libxcomposite1:s390x (1:0.4.5-1build2) ... 209s Setting up libdrm-amdgpu1:s390x (2.4.120-2) ... 209s Setting up libwacom-common (2.10.0-1) ... 209s Setting up libwayland-client0:s390x (1.22.0-2.1) ... 209s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 209s Setting up gnuplot-data (5.4.4+dfsg1-2build1) ... 209s Setting up libice6:s390x (2:1.0.10-1build2) ... 209s Setting up libgbm1:s390x (24.0.1-1ubuntu1) ... 209s Setting up libwacom9:s390x (2.10.0-1) ... 209s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 209s Setting up libxtst6:s390x (2:1.2.3-1.1) ... 209s Setting up libxcursor1:s390x (1:1.2.1-1) ... 209s Setting up libgl1-mesa-dri:s390x (24.0.1-1ubuntu1) ... 209s Setting up libavahi-common3:s390x (0.8-13ubuntu2) ... 209s Setting up dconf-service (0.40.0-4) ... 209s Setting up libwxbase3.2-1:s390x (3.2.4+dfsg-3) ... 209s Setting up libqt5network5:s390x (5.15.12+dfsg-3ubuntu1) ... 209s Setting up libinput-bin (1.25.0-1) ... 209s Setting up libatk-bridge2.0-0:s390x (2.50.0-1) ... 209s Setting up libthai0:s390x (0.1.29-2) ... 209s Setting up libegl-mesa0:s390x (24.0.1-1ubuntu1) ... 209s Setting up libkmer-dev (0~20150903+r2013-8build4) ... 209s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 209s Setting up libwayland-cursor0:s390x (1.22.0-2.1) ... 209s Setting up libegl1:s390x (1.7.0-1) ... 209s Setting up libgdk-pixbuf-2.0-0:s390x (2.42.10+dfsg-3) ... 209s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 209s Setting up libsm6:s390x (2:1.2.3-1build2) ... 209s Setting up libavahi-client3:s390x (0.8-13ubuntu2) ... 209s Setting up libinput10:s390x (1.25.0-1) ... 210s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 210s Setting up fontconfig (2.15.0-1ubuntu1) ... 212s Regenerating fonts cache... done. 212s Setting up libglx-mesa0:s390x (24.0.1-1ubuntu1) ... 212s Setting up libglx0:s390x (1.7.0-1) ... 212s Setting up dconf-gsettings-backend:s390x (0.40.0-4) ... 212s Setting up libpango-1.0-0:s390x (1.51.0+ds-4) ... 212s Setting up libcairo2:s390x (1.18.0-1) ... 212s Setting up libgl1:s390x (1.7.0-1) ... 212s Setting up libnotify4:s390x (0.8.3-1) ... 212s Setting up libgd3:s390x (2.3.3-9ubuntu1) ... 212s Setting up libcups2:s390x (2.4.6-0ubuntu3) ... 212s Setting up libcairo-gobject2:s390x (1.18.0-1) ... 212s Setting up libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 212s Setting up libgtk-3-common (3.24.40-2ubuntu1) ... 212s Setting up libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 212s Setting up libqt5gui5:s390x (5.15.12+dfsg-3ubuntu1) ... 212s Setting up libqt5widgets5:s390x (5.15.12+dfsg-3ubuntu1) ... 212s Setting up libqt5printsupport5:s390x (5.15.12+dfsg-3ubuntu1) ... 212s Setting up libqt5svg5:s390x (5.15.12-1) ... 212s Setting up adwaita-icon-theme (46~rc-1) ... 212s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 212s Setting up humanity-icon-theme (0.6.16) ... 212s Setting up ubuntu-mono (24.04-0ubuntu1) ... 212s Processing triggers for man-db (2.12.0-3) ... 212s Processing triggers for udev (255.2-3ubuntu2) ... 213s Processing triggers for libglib2.0-0:s390x (2.79.2-1~ubuntu1) ... 213s Setting up libgtk-3-0:s390x (3.24.40-2ubuntu1) ... 213s Processing triggers for libc-bin (2.39-0ubuntu2) ... 213s Setting up libwxgtk3.2-1:s390x (3.2.4+dfsg-3) ... 213s Setting up gnuplot-qt (5.4.4+dfsg1-2build1) ... 213s update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode 213s Setting up gnuplot (5.4.4+dfsg1-2build1) ... 213s Setting up atac (0~20150903+r2013-8build4) ... 214s Setting up kmer (0~20150903+r2013-8build4) ... 214s Setting up autopkgtest-satdep (0) ... 214s Processing triggers for libc-bin (2.39-0ubuntu2) ... 221s (Reading database ... 65928 files and directories currently installed.) 222s Removing autopkgtest-satdep (0) ... 222s autopkgtest [00:35:04]: test sim4db-unit-test: [----------------------- 223s Testing sim4 for intra-species alignment... 223s 225s Testing sim4cc for inter-species alignment... 225s 229s RESULTS: OK 229s 229s autopkgtest [00:35:11]: test sim4db-unit-test: -----------------------] 229s sim4db-unit-test PASS 229s autopkgtest [00:35:11]: test sim4db-unit-test: - - - - - - - - - - results - - - - - - - - - - 230s autopkgtest [00:35:12]: test atac-unit-test: preparing testbed 234s Reading package lists... 234s Building dependency tree... 234s Reading state information... 234s Starting pkgProblemResolver with broken count: 0 234s Starting 2 pkgProblemResolver with broken count: 0 234s Done 234s The following NEW packages will be installed: 234s autopkgtest-satdep 234s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 234s Need to get 0 B/744 B of archives. 234s After this operation, 0 B of additional disk space will be used. 234s Get:1 /tmp/autopkgtest.4n4lXH/3-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [744 B] 235s Selecting previously unselected package autopkgtest-satdep. 235s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65928 files and directories currently installed.) 235s Preparing to unpack .../3-autopkgtest-satdep.deb ... 235s Unpacking autopkgtest-satdep (0) ... 235s Setting up autopkgtest-satdep (0) ... 239s (Reading database ... 65928 files and directories currently installed.) 239s Removing autopkgtest-satdep (0) ... 239s autopkgtest [00:35:21]: test atac-unit-test: [----------------------- 240s Rewriting '/tmp/autopkgtest.4n4lXH/autopkgtest_tmp/GCF_000195855.1_ASM19585v1_genomic.fna' to '/tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Lepr.fasta', removing newlines. 240s Rewriting '/tmp/autopkgtest.4n4lXH/autopkgtest_tmp/GCF_000195955.2_ASM19595v2_genomic.fna' to '/tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Tuber.fasta', removing newlines. 240s 240s /usr/bin/meryl -B -C -threads 2 -m 20 -s /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Lepr.fasta -o /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Lepr.ms20 240s 241s 241s /usr/bin/meryl -v -M lessthanorequal 1 -s /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Lepr.ms20 -o /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Lepr.ms20.le1 241s 241s 241s /usr/bin/meryl -B -C -threads 2 -m 20 -s /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Tuber.fasta -o /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Tuber.ms20 241s 243s 243s /usr/bin/meryl -v -M lessthanorequal 1 -s /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Tuber.ms20 -o /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Tuber.ms20.le1 243s 244s Finding the min count between Lepr.ms20.le1 and Tuber.ms20.le1. 244s 244s /usr/bin/meryl -M min -s /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Lepr.ms20.le1 -s /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Tuber.ms20.le1 -o /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/min.Lepr.ms20.le1.Tuber.ms20.le1 244s 244s includeSize is proportional to 1048608. 244s excludeSize is proportional to 15724920. 244s /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/min.Lepr.ms20.le1.Tuber.ms20.le1 has 33265 mers. 244s /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Lepr.ms20 has 3268184 mers. 244s includeSize is exactly 33265 mers. 244s excludeSize is exactly 3234919 mers. 244s 244s /usr/bin/../lib/atac/bin/seatac -verbose -mersize 20 -minlength 20 -maxgap 0 -numthreads 4 -table /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Lepr.fasta -stream /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Tuber.fasta -only /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.include -output /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber-segment-000.matches -filtername /usr/bin/../lib/atac/lib/filter-heavychains.so -filteropts "-1 Lepr -2 Tuber -S 100 -J 100000" > /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber-000.out 2>&1 244s 246s 246s /usr/bin/../lib/atac/bin/matchExtender /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.header /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber-segment-000.matches > /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 246s 246s WARNING: TMPDIR not set, defaulting to '/tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results'. 246s 246s python3 /usr/bin/../lib/atac/bin/AtacDriver.py /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 246s 246s Read checkpoint in 0 seconds. 246s Creating /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Lepr.fasta.idxStore 246s Creating /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/meryldir/Tuber.fasta.idxStore 246s We need to make the raw matches. 246s runName = /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 246s 246s Keep step=0 246s At step=0 246s Time elapsed=0.000331878662109375 246s At uniqueFilter, step=1 246s Time elapsed=0.0003819465637207031 246s Running UniqueFilter 246s sort -T . -k 1,1 -k 2,2 -k 3n -k 4nr /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/tmp450uibes > /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/tmptbdu201x 246s time elapsed is 0.0014257431030273438 246s time elapsed is 3.3855438232421875e-05 246s sort -T . -k 1,1 -k 2,2 -k 3n -k 4nr /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/tmp2b_syn_e > /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/tmpondcfonb 246s time elapsed is 0.0012993812561035156 246s time elapsed is 3.62396240234375e-05 247s At filterByMatchLength, step=2 247s Time elapsed=1.3285505771636963 247s Running filterByMatchLength 247s At trimMatchOverlaps, step=3 247s Time elapsed=1.3288321495056152 247s Start trimming for bp one-to-one-ness 249s trimMatchOverlapsInX: 249s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 249s 249s trimMatchOverlapsInY: 249s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 249s 249s Finished trimming for bp one-to-one-ness 249s At formPerfectRuns, step=4 249s Time elapsed=2.6638498306274414 249s from /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim making /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6 249s formPerfectRuns step=0 249s formPerfectRuns step=1 249s formPerfectRuns step=2 249s formPerfectRuns step=3 249s At onlyKeepLongRuns, step=5 249s Time elapsed=2.679542303085327 249s from /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6 making /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100 249s At formPerfectRuns, step=6 249s Time elapsed=2.67980694770813 249s Heal the perfect runs 249s formPerfectRuns step=0 249s formPerfectRuns step=1 249s formPerfectRuns step=2 249s formPerfectRuns step=3 249s At squeezeIntraRunGaps, step=7 249s Time elapsed=2.696640968322754 249s from /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100.pr to /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100.pr.sq 249s countLines 0 inter_run_gap_count 0 closed_gap_count 0 squeezed 0 x_len 0 y_len 0 x_nonACGT 0 y_nonACGT 0 249s theIsolatedSNPcount = 0 249s completefillednotXY = 0 249s completefilledXnotY = 0 249s completefilledYnotX = 0 249s completefilledXandY = 0 249s At TrimMatchOverlaps, step=8 249s Time elapsed=2.697007179260254 249s Start trimming for bp one-to-one-ness 249s trimMatchOverlapsInX: 249s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 249s 249s trimMatchOverlapsInY: 249s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 249s 249s Finished trimming for bp one-to-one-ness 249s At RunsAsMatches, step=9 249s Time elapsed=2.712308406829834 249s At fillIntraRunGaps, step=10 249s Time elapsed=2.7125468254089355 249s fill the intrarun gaps 249s begin 249s countLines=0 249s countLines 0 inter_run_gap_count 0 249s At TrimMatchOverlaps, step=11 249s Time elapsed=2.712830066680908 249s trim the overlaps 249s trimMatchOverlapsInX: 249s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 249s 249s trimMatchOverlapsInY: 249s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 249s 249s Ran in 2 seconds. 249s 249s /usr/bin/../lib/atac/bin/correctGaps -m /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.atac -l /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.gapsclosed.log > /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.gapsclosed.atac 249s 249s 249s cd /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results && /usr/bin/../lib/atac/bin/clumpMaker -c 5000 -1 -f /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/LeprvsTuber.atac > /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/LeprvsTuber.ref=Lepr.clumpCost=5000.atac 249s 249s 1 load the matches 249s 2 sort the matches 249s 3 score the matches 249s 4 mark clumps 249s 5 sort the matches 249s 6 output matches with clumps 249s 249s cd /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results && /usr/bin/../lib/atac/bin/clumpMaker -c 5000 -2 -f /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/LeprvsTuber.atac > /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/LeprvsTuber.ref=Tuber.clumpCost=5000.atac 249s 249s 1 load the matches 249s 2 sort the matches 249s 3 score the matches 249s 4 mark clumps 249s 5 sort the matches 249s 6 output matches with clumps 249s 249s /usr/bin/../lib/atac/bin/statsGenerator -a /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/LeprvsTuber.atac -p /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/stats/LeprvsTuber -g A > /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/stats/LeprvsTuber.stats 249s 249s 249s perl /usr/bin/../lib/atac/bin/makeplot.pl u /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/LeprvsTuber.atac /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/stats/LeprvsTuber.matches.png 249s 249s 249s replot 249s ^ 249s "/tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/stats/LeprvsTuber.matches.gp" line 24: no previous plot 249s 249s 249s perl /usr/bin/../lib/atac/bin/makeplot.pl r /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/LeprvsTuber.atac /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/stats/LeprvsTuber.runs.png 249s 249s 249s replot 249s ^ 249s "/tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/stats/LeprvsTuber.runs.gp" line 24: no previous plot 249s 249s 249s Finished! Output is: 249s matches and runs -- /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/LeprvsTuber.atac 249s clumps -- /tmp/autopkgtest.4n4lXH/autopkgtest_tmp/results/LeprvsTuber.*clump*.atac 249s RESULTS: OK 249s 249s autopkgtest [00:35:31]: test atac-unit-test: -----------------------] 250s autopkgtest [00:35:32]: test atac-unit-test: - - - - - - - - - - results - - - - - - - - - - 250s atac-unit-test PASS 250s autopkgtest [00:35:32]: @@@@@@@@@@@@@@@@@@@@ summary 250s sim4db-unit-test PASS 250s atac-unit-test PASS 290s Creating nova instance adt-noble-s390x-kmer-20240314-003121-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240313.img (UUID 0e1b76af-9b9f-41d4-9256-eaba5cfd87c1)...