0s autopkgtest [00:52:29]: starting date and time: 2024-04-19 00:52:29+0000 0s autopkgtest [00:52:29]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [00:52:29]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.abos3m0h/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gsl --apt-upgrade igor --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gsl/2.7.1+dfsg-6ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-s390x-13.secgroup --name adt-noble-s390x-igor-20240419-005228-juju-7f2275-prod-proposed-migration-environment-3-b475092c-7a39-4efe-b7a4-1e0a6511482c --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 99s autopkgtest [00:54:08]: testbed dpkg architecture: s390x 99s autopkgtest [00:54:08]: testbed apt version: 2.7.14build2 99s autopkgtest [00:54:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 100s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 100s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2340 B] 100s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [12.2 kB] 100s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [376 kB] 100s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [54.2 kB] 100s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [95.6 kB] 100s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 100s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [976 B] 100s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 100s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [497 kB] 101s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 101s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 102s Fetched 1166 kB in 1s (888 kB/s) 102s Reading package lists... 104s sh: 4: dhclient: not found 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade... 105s The following packages will be upgraded: 105s apport apport-core-dump-handler libkeyutils1 libnuma1 make man-db 105s netcat-openbsd numactl python3-apport python3-problem-report 105s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Need to get 1783 kB of archives. 105s After this operation, 3072 B disk space will be freed. 105s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x python3-problem-report all 2.28.1-0ubuntu1 [23.8 kB] 105s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x python3-apport all 2.28.1-0ubuntu1 [92.1 kB] 105s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x apport-core-dump-handler all 2.28.1-0ubuntu1 [16.8 kB] 105s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x apport all 2.28.1-0ubuntu1 [83.5 kB] 105s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libkeyutils1 s390x 1.6.3-3build1 [9556 B] 105s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x netcat-openbsd s390x 1.226-1ubuntu2 [44.0 kB] 105s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libnuma1 s390x 2.0.18-1build1 [25.1 kB] 106s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x man-db s390x 2.12.0-4build2 [1253 kB] 107s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x make s390x 4.3-4.1build2 [196 kB] 107s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x numactl s390x 2.0.18-1build1 [40.0 kB] 107s Preconfiguring packages ... 107s Fetched 1783 kB in 2s (912 kB/s) 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78323 files and directories currently installed.) 107s Preparing to unpack .../0-python3-problem-report_2.28.1-0ubuntu1_all.deb ... 107s Unpacking python3-problem-report (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ... 107s Preparing to unpack .../1-python3-apport_2.28.1-0ubuntu1_all.deb ... 108s Unpacking python3-apport (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ... 108s Preparing to unpack .../2-apport-core-dump-handler_2.28.1-0ubuntu1_all.deb ... 108s Unpacking apport-core-dump-handler (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ... 108s Preparing to unpack .../3-apport_2.28.1-0ubuntu1_all.deb ... 108s Unpacking apport (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ... 108s Preparing to unpack .../4-libkeyutils1_1.6.3-3build1_s390x.deb ... 108s Unpacking libkeyutils1:s390x (1.6.3-3build1) over (1.6.3-3) ... 108s Preparing to unpack .../5-netcat-openbsd_1.226-1ubuntu2_s390x.deb ... 108s Unpacking netcat-openbsd (1.226-1ubuntu2) over (1.226-1ubuntu1) ... 108s Preparing to unpack .../6-libnuma1_2.0.18-1build1_s390x.deb ... 108s Unpacking libnuma1:s390x (2.0.18-1build1) over (2.0.18-1) ... 108s Preparing to unpack .../7-man-db_2.12.0-4build2_s390x.deb ... 108s Unpacking man-db (2.12.0-4build2) over (2.12.0-4build1) ... 108s Preparing to unpack .../8-make_4.3-4.1build2_s390x.deb ... 108s Unpacking make (4.3-4.1build2) over (4.3-4.1build1) ... 108s Preparing to unpack .../9-numactl_2.0.18-1build1_s390x.deb ... 108s Unpacking numactl (2.0.18-1build1) over (2.0.18-1) ... 108s Setting up libkeyutils1:s390x (1.6.3-3build1) ... 108s Setting up python3-problem-report (2.28.1-0ubuntu1) ... 108s Setting up netcat-openbsd (1.226-1ubuntu2) ... 108s Setting up man-db (2.12.0-4build2) ... 108s Updating database of manual pages ... 110s man-db.service is a disabled or a static unit not running, not starting it. 110s Setting up python3-apport (2.28.1-0ubuntu1) ... 110s Setting up make (4.3-4.1build2) ... 110s Setting up libnuma1:s390x (2.0.18-1build1) ... 110s Setting up numactl (2.0.18-1build1) ... 110s Setting up apport-core-dump-handler (2.28.1-0ubuntu1) ... 111s Setting up apport (2.28.1-0ubuntu1) ... 111s Installing new version of config file /etc/apport/crashdb.conf ... 112s apport-autoreport.service is a disabled or a static unit not running, not starting it. 112s Processing triggers for libc-bin (2.39-0ubuntu8) ... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 113s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 113s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 113s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 114s Reading package lists... 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s Calculating upgrade... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s autopkgtest [00:54:24]: rebooting testbed after setup commands that affected boot 157s autopkgtest [00:55:06]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr 4 21:54:17 UTC 2024 159s autopkgtest [00:55:08]: @@@@@@@@@@@@@@@@@@@@ apt-source igor 162s Get:1 http://ftpmaster.internal/ubuntu noble/universe igor 1.4.0+dfsg-4 (dsc) [2046 B] 162s Get:2 http://ftpmaster.internal/ubuntu noble/universe igor 1.4.0+dfsg-4 (tar) [1001 kB] 162s Get:3 http://ftpmaster.internal/ubuntu noble/universe igor 1.4.0+dfsg-4 (diff) [5200 B] 162s gpgv: Signature made Sat Nov 5 19:49:36 2022 UTC 162s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 162s gpgv: issuer "tille@debian.org" 162s gpgv: Can't check signature: No public key 162s dpkg-source: warning: cannot verify inline signature for ./igor_1.4.0+dfsg-4.dsc: no acceptable signature found 162s autopkgtest [00:55:11]: testing package igor version 1.4.0+dfsg-4 163s autopkgtest [00:55:12]: build not needed 163s autopkgtest [00:55:12]: test run-unit-test: preparing testbed 164s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Starting pkgProblemResolver with broken count: 0 165s Starting 2 pkgProblemResolver with broken count: 0 165s Done 165s The following additional packages will be installed: 165s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu g++ 165s g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-base 165s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu igor libasan8 libatomic1 libblas3 165s libcc1-0 libgcc-13-dev libgomp1 libgsl27 libgslcblas0 libisl23 libitm1 165s libjemalloc2 libmpc3 libstdc++-13-dev libubsan1 165s Suggested packages: 165s cpp-doc gcc-13-locales cpp-13-doc g++-multilib g++-13-multilib gcc-13-doc 165s gcc-multilib manpages-dev autoconf automake libtool flex bison gdb gcc-doc 165s gcc-13-multilib gdb-s390x-linux-gnu gsl-ref-psdoc | gsl-doc-pdf 165s | gsl-doc-info | gsl-ref-html libstdc++-13-doc 165s The following NEW packages will be installed: 165s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 165s cpp-s390x-linux-gnu g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu 165s gcc gcc-13 gcc-13-base gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu igor 165s libasan8 libatomic1 libblas3 libcc1-0 libgcc-13-dev libgomp1 libgsl27 165s libgslcblas0 libisl23 libitm1 libjemalloc2 libmpc3 libstdc++-13-dev 165s libubsan1 165s 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. 165s Need to get 51.8 MB/51.8 MB of archives. 165s After this operation, 169 MB of additional disk space will be used. 165s Get:1 /tmp/autopkgtest.fuL578/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [716 B] 165s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-base s390x 13.2.0-23ubuntu4 [48.9 kB] 166s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3build1 [713 kB] 166s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1build1 [58.4 kB] 166s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-23ubuntu4 [9939 kB] 169s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-23ubuntu4 [1030 B] 169s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 169s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 169s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240412-0ubuntu1 [49.9 kB] 169s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240412-0ubuntu1 [151 kB] 169s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240412-0ubuntu1 [31.1 kB] 169s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240412-0ubuntu1 [9398 B] 169s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240412-0ubuntu1 [3003 kB] 169s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240412-0ubuntu1 [1188 kB] 169s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-23ubuntu4 [1004 kB] 169s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-23ubuntu4 [19.1 MB] 172s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-23ubuntu4 [472 kB] 172s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 172s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 172s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-23ubuntu4 [2494 kB] 172s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-23ubuntu4 [11.3 MB] 173s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-23ubuntu4 [14.5 kB] 173s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 173s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 173s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 173s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3build1 [245 kB] 173s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libgslcblas0 s390x 2.7.1+dfsg-6ubuntu2 [150 kB] 173s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libgsl27 s390x 2.7.1+dfsg-6ubuntu2 [1084 kB] 173s Get:29 http://ftpmaster.internal/ubuntu noble/universe s390x libjemalloc2 s390x 5.3.0-2 [201 kB] 173s Get:30 http://ftpmaster.internal/ubuntu noble/universe s390x igor s390x 1.4.0+dfsg-4 [517 kB] 174s Fetched 51.8 MB in 8s (6233 kB/s) 174s Selecting previously unselected package gcc-13-base:s390x. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78322 files and directories currently installed.) 174s Preparing to unpack .../00-gcc-13-base_13.2.0-23ubuntu4_s390x.deb ... 174s Unpacking gcc-13-base:s390x (13.2.0-23ubuntu4) ... 174s Selecting previously unselected package libisl23:s390x. 174s Preparing to unpack .../01-libisl23_0.26-3build1_s390x.deb ... 174s Unpacking libisl23:s390x (0.26-3build1) ... 174s Selecting previously unselected package libmpc3:s390x. 174s Preparing to unpack .../02-libmpc3_1.3.1-1build1_s390x.deb ... 174s Unpacking libmpc3:s390x (1.3.1-1build1) ... 174s Selecting previously unselected package cpp-13-s390x-linux-gnu. 174s Preparing to unpack .../03-cpp-13-s390x-linux-gnu_13.2.0-23ubuntu4_s390x.deb ... 174s Unpacking cpp-13-s390x-linux-gnu (13.2.0-23ubuntu4) ... 174s Selecting previously unselected package cpp-13. 174s Preparing to unpack .../04-cpp-13_13.2.0-23ubuntu4_s390x.deb ... 174s Unpacking cpp-13 (13.2.0-23ubuntu4) ... 174s Selecting previously unselected package cpp-s390x-linux-gnu. 174s Preparing to unpack .../05-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 174s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 174s Selecting previously unselected package cpp. 174s Preparing to unpack .../06-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 174s Unpacking cpp (4:13.2.0-7ubuntu1) ... 174s Selecting previously unselected package libcc1-0:s390x. 174s Preparing to unpack .../07-libcc1-0_14-20240412-0ubuntu1_s390x.deb ... 174s Unpacking libcc1-0:s390x (14-20240412-0ubuntu1) ... 174s Selecting previously unselected package libgomp1:s390x. 174s Preparing to unpack .../08-libgomp1_14-20240412-0ubuntu1_s390x.deb ... 174s Unpacking libgomp1:s390x (14-20240412-0ubuntu1) ... 174s Selecting previously unselected package libitm1:s390x. 174s Preparing to unpack .../09-libitm1_14-20240412-0ubuntu1_s390x.deb ... 174s Unpacking libitm1:s390x (14-20240412-0ubuntu1) ... 174s Selecting previously unselected package libatomic1:s390x. 174s Preparing to unpack .../10-libatomic1_14-20240412-0ubuntu1_s390x.deb ... 174s Unpacking libatomic1:s390x (14-20240412-0ubuntu1) ... 174s Selecting previously unselected package libasan8:s390x. 174s Preparing to unpack .../11-libasan8_14-20240412-0ubuntu1_s390x.deb ... 174s Unpacking libasan8:s390x (14-20240412-0ubuntu1) ... 174s Selecting previously unselected package libubsan1:s390x. 174s Preparing to unpack .../12-libubsan1_14-20240412-0ubuntu1_s390x.deb ... 174s Unpacking libubsan1:s390x (14-20240412-0ubuntu1) ... 174s Selecting previously unselected package libgcc-13-dev:s390x. 174s Preparing to unpack .../13-libgcc-13-dev_13.2.0-23ubuntu4_s390x.deb ... 174s Unpacking libgcc-13-dev:s390x (13.2.0-23ubuntu4) ... 175s Selecting previously unselected package gcc-13-s390x-linux-gnu. 175s Preparing to unpack .../14-gcc-13-s390x-linux-gnu_13.2.0-23ubuntu4_s390x.deb ... 175s Unpacking gcc-13-s390x-linux-gnu (13.2.0-23ubuntu4) ... 175s Selecting previously unselected package gcc-13. 175s Preparing to unpack .../15-gcc-13_13.2.0-23ubuntu4_s390x.deb ... 175s Unpacking gcc-13 (13.2.0-23ubuntu4) ... 175s Selecting previously unselected package gcc-s390x-linux-gnu. 175s Preparing to unpack .../16-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 175s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Selecting previously unselected package gcc. 175s Preparing to unpack .../17-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 175s Unpacking gcc (4:13.2.0-7ubuntu1) ... 175s Selecting previously unselected package libstdc++-13-dev:s390x. 175s Preparing to unpack .../18-libstdc++-13-dev_13.2.0-23ubuntu4_s390x.deb ... 175s Unpacking libstdc++-13-dev:s390x (13.2.0-23ubuntu4) ... 175s Selecting previously unselected package g++-13-s390x-linux-gnu. 175s Preparing to unpack .../19-g++-13-s390x-linux-gnu_13.2.0-23ubuntu4_s390x.deb ... 175s Unpacking g++-13-s390x-linux-gnu (13.2.0-23ubuntu4) ... 175s Selecting previously unselected package g++-13. 175s Preparing to unpack .../20-g++-13_13.2.0-23ubuntu4_s390x.deb ... 175s Unpacking g++-13 (13.2.0-23ubuntu4) ... 175s Selecting previously unselected package g++-s390x-linux-gnu. 175s Preparing to unpack .../21-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 175s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 176s Selecting previously unselected package g++. 176s Preparing to unpack .../22-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 176s Unpacking g++ (4:13.2.0-7ubuntu1) ... 176s Selecting previously unselected package build-essential. 176s Preparing to unpack .../23-build-essential_12.10ubuntu1_s390x.deb ... 176s Unpacking build-essential (12.10ubuntu1) ... 176s Selecting previously unselected package libblas3:s390x. 176s Preparing to unpack .../24-libblas3_3.12.0-3build1_s390x.deb ... 176s Unpacking libblas3:s390x (3.12.0-3build1) ... 176s Selecting previously unselected package libgslcblas0:s390x. 176s Preparing to unpack .../25-libgslcblas0_2.7.1+dfsg-6ubuntu2_s390x.deb ... 176s Unpacking libgslcblas0:s390x (2.7.1+dfsg-6ubuntu2) ... 176s Selecting previously unselected package libgsl27:s390x. 176s Preparing to unpack .../26-libgsl27_2.7.1+dfsg-6ubuntu2_s390x.deb ... 176s Unpacking libgsl27:s390x (2.7.1+dfsg-6ubuntu2) ... 176s Selecting previously unselected package libjemalloc2:s390x. 176s Preparing to unpack .../27-libjemalloc2_5.3.0-2_s390x.deb ... 176s Unpacking libjemalloc2:s390x (5.3.0-2) ... 176s Selecting previously unselected package igor. 176s Preparing to unpack .../28-igor_1.4.0+dfsg-4_s390x.deb ... 176s Unpacking igor (1.4.0+dfsg-4) ... 176s Selecting previously unselected package autopkgtest-satdep. 176s Preparing to unpack .../29-1-autopkgtest-satdep.deb ... 176s Unpacking autopkgtest-satdep (0) ... 176s Setting up libgslcblas0:s390x (2.7.1+dfsg-6ubuntu2) ... 176s Setting up libgsl27:s390x (2.7.1+dfsg-6ubuntu2) ... 176s Setting up libjemalloc2:s390x (5.3.0-2) ... 176s Setting up libgomp1:s390x (14-20240412-0ubuntu1) ... 176s Setting up libblas3:s390x (3.12.0-3build1) ... 176s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 176s Setting up gcc-13-base:s390x (13.2.0-23ubuntu4) ... 176s Setting up libmpc3:s390x (1.3.1-1build1) ... 176s Setting up libatomic1:s390x (14-20240412-0ubuntu1) ... 176s Setting up libubsan1:s390x (14-20240412-0ubuntu1) ... 176s Setting up libasan8:s390x (14-20240412-0ubuntu1) ... 176s Setting up libisl23:s390x (0.26-3build1) ... 176s Setting up libcc1-0:s390x (14-20240412-0ubuntu1) ... 176s Setting up libitm1:s390x (14-20240412-0ubuntu1) ... 176s Setting up igor (1.4.0+dfsg-4) ... 176s Setting up cpp-13-s390x-linux-gnu (13.2.0-23ubuntu4) ... 176s Setting up libgcc-13-dev:s390x (13.2.0-23ubuntu4) ... 176s Setting up libstdc++-13-dev:s390x (13.2.0-23ubuntu4) ... 176s Setting up cpp-13 (13.2.0-23ubuntu4) ... 176s Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 176s Setting up gcc-13-s390x-linux-gnu (13.2.0-23ubuntu4) ... 176s Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 176s Setting up g++-13-s390x-linux-gnu (13.2.0-23ubuntu4) ... 176s Setting up gcc-13 (13.2.0-23ubuntu4) ... 176s Setting up cpp (4:13.2.0-7ubuntu1) ... 176s Setting up g++-13 (13.2.0-23ubuntu4) ... 176s Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 176s Setting up gcc (4:13.2.0-7ubuntu1) ... 176s Setting up g++ (4:13.2.0-7ubuntu1) ... 176s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 176s Setting up build-essential (12.10ubuntu1) ... 176s Setting up autopkgtest-satdep (0) ... 176s Processing triggers for man-db (2.12.0-4build2) ... 176s Processing triggers for libc-bin (2.39-0ubuntu8) ... 179s (Reading database ... 79567 files and directories currently installed.) 179s Removing autopkgtest-satdep (0) ... 180s autopkgtest [00:55:29]: test run-unit-test: [----------------------- 180s genomicDs.fasta 180s genomicJs_all_curated.fasta 180s genomicVs_with_primers.fasta 180s murugan_naive1_noncoding_demo_seqs.txt 180s =================== BEGIN TEST genomicDs.fasta ============================== 180s Batch name set to: foo_ 180s FASTA extension detected for the input sequence file 180s Working directory set to: "/tmp/igor-test-output.R8irG7/" 180s Batch name set to: foo_ 180s Species parameter set to: human 180s Chain parameter set to: beta 180s Working directory set to: "/tmp/igor-test-output.R8irG7/" 180s Performing V alignments.... 180s V_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 180s Performing D alignments.... 180s D_gene alignments [|||||==========================PASSED================================ 180s =================== BEGIN TEST genomicJs_all_curated.fasta ============================== 180s |||||||||||||||||||||||||||||||||||||||||||||] Done. 180s Performing J alignments.... 180s J_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 180s Performing CDR3 sequence extraction .... 180s Batch name set to: foo_ 180s FASTA extension detected for the input sequence file 180s Working directory set to: "/tmp/igor-test-output.R8irG7/" 180s Batch name set to: foo_ 180s Species parameter set to: human 180s Chain parameter set to: beta 180s Working directory set to: "/tmp/igor-test-output.R8irG7/" 180s Performing V alignments.... 182s V_gene alignments [||||||||||||==========================PASSED================================ 182s =================== BEGIN TEST genomicVs_with_primers.fasta ============================== 182s ||||||||||||||||||||||||||||||||||||||] Done. 182s Performing D alignments.... 182s D_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 182s Performing J alignments.... 182s J_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 182s Performing CDR3 sequence extraction .... 182s Batch name set to: foo_ 182s FASTA extension detected for the input sequence file 182s Working directory set to: "/tmp/igor-test-output.R8irG7/" 182s Batch name set to: foo_ 182s Species parameter set to: human 182s Chain parameter set to: beta 182s Working directory set to: "/tmp/igor-test-output.R8irG7/" 182s Performing V alignments.... 247s V_gene alignments [|||||||||||||||||||||||||||| ] 56.17 % V_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 247s Performing D alignments.... 247s D_gene alignments [|||||||||||||||||||||||||||| ] 56.17 % D_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 247s Performing J alignments.... 249s J_gene alignments [|||||||||||||||||||||||||||| ] 56.17 % J_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 249s Performing CDR3 sequence extraction .... 249s ==========================PASSED================================ 249s =================== BEGIN TEST murugan_naive1_noncoding_demo_seqs.txt ============================== 249s Batch name set to: foo_ 249s TXT extension detected for the input sequence file 249s Working directory set to: "/tmp/igor-test-output.R8irG7/" 249s Batch name set to: foo_ 249s Species parameter set to: human 249s Chain parameter set to: beta 249s Working directory set to: "/tmp/igor-test-output.R8irG7/" 249s Performing V alignments.... 290s V_gene alignments [|||||||| ] 16.66 % V_gene alignments [|||||||||||||||| ] 33.33 % V_gene alignments [||||||||||||||||||||||||| ] 50.00 % V_gene alignments [||||||||||||||||||||||||||||||||| ] 66.66 % V_gene alignments [||||||||||||||||||||||||||||||||||||||||| ] 83.33 % V_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] 100.0 % V_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 290s Performing D alignments.... 290s D_gene alignments [|||||||| ] 16.66 % D_gene alignments [|||||||||||||||| ] 33.33 % D_gene alignments [||||||||||||||||||||||||| ] 50.00 % D_gene alignments [||||||||||||||||||||||||||||||||| ] 66.66 % D_gene alignments [||||||||||||||||||||||||||||||||||||||||| ] 83.33 % D_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] 100.0 % D_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 290s Performing J alignments.... 292s J_gene alignments [|||||||| ] 16.66 % J_gene alignments [|||||||||||||||| ] 33.33 % J_gene alignments [||||||||||||||||||||||||| ] 50.00 % J_gene alignments [||||||||||||||||||||||||||||||||| ] 66.66 % J_gene alignments [||||||||||||||||||||||||||||||||||||||||| ] 83.33 % J_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] 100.0 % J_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 292s Performing CDR3 sequence extraction .... 292s ==========================PASSED================================ 292s autopkgtest [00:57:21]: test run-unit-test: -----------------------] 293s autopkgtest [00:57:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 293s run-unit-test PASS 293s autopkgtest [00:57:22]: @@@@@@@@@@@@@@@@@@@@ summary 293s run-unit-test PASS 307s Creating nova instance adt-noble-s390x-igor-20240419-005228-juju-7f2275-prod-proposed-migration-environment-3-b475092c-7a39-4efe-b7a4-1e0a6511482c from image adt/ubuntu-noble-s390x-server-20240418.img (UUID 85e53509-ea4e-4742-afdb-a30c7e328507)...