0s autopkgtest [19:35:19]: starting date and time: 2024-03-23 19:35:19+0000 0s autopkgtest [19:35:19]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [19:35:19]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qnxpepx_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sra-sdk --apt-upgrade htsjdk --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sra-sdk/3.0.3+dfsg-6ubuntu4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-10.secgroup --name adt-noble-s390x-htsjdk-20240323-193518-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 83s autopkgtest [19:36:42]: testbed dpkg architecture: s390x 83s autopkgtest [19:36:42]: testbed apt version: 2.7.12 83s autopkgtest [19:36:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 85s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 85s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 85s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 85s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3981 kB] 85s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 85s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [652 kB] 86s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 86s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 86s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 86s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4246 kB] 86s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 86s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB] 86s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 88s Fetched 9613 kB in 3s (3781 kB/s) 88s Reading package lists... 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Calculating upgrade... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Unknown architecture, assuming PC-style ttyS0 99s sh: Attempting to set up Debian/Ubuntu apt sources automatically 99s sh: Distribution appears to be Ubuntu 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s eatmydata is already the newest version (131-1). 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s dbus is already the newest version (1.14.10-4ubuntu1). 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s rng-tools-debian is already the newest version (2.4). 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s The following packages will be REMOVED: 101s cloud-init* python3-configobj* python3-debconf* 102s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 102s After this operation, 3256 kB disk space will be freed. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 102s Removing cloud-init (24.1.2-0ubuntu1) ... 102s Removing python3-configobj (5.0.8-3) ... 102s Removing python3-debconf (1.5.86) ... 102s Processing triggers for man-db (2.12.0-3) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51781 files and directories currently installed.) 103s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 103s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 103s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 103s invoke-rc.d: policy-rc.d denied execution of try-restart. 103s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s linux-generic is already the newest version (6.8.0-11.11+1). 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 104s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 104s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 106s Reading package lists... 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Calculating upgrade... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s autopkgtest [19:37:06]: rebooting testbed after setup commands that affected boot 122s autopkgtest [19:37:21]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 126s autopkgtest [19:37:25]: @@@@@@@@@@@@@@@@@@@@ apt-source htsjdk 152s Get:1 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (dsc) [2649 B] 152s Get:2 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (tar) [46.9 MB] 152s Get:3 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (diff) [39.4 kB] 152s gpgv: Signature made Sun Feb 11 21:45:33 2024 UTC 152s gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 152s gpgv: Can't check signature: No public key 152s dpkg-source: warning: cannot verify inline signature for ./htsjdk_4.1.0+dfsg-1.dsc: no acceptable signature found 152s autopkgtest [19:37:37]: testing package htsjdk version 4.1.0+dfsg-1 154s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 154s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 155s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 155s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 156s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 156s command1 SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 156s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 157s autopkgtest [19:37:56]: build not needed 157s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 327s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 327s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 327s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 327s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 327s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 327s command1 SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s autopkgtest [19:40:47]: @@@@@@@@@@@@@@@@@@@@ summary 328s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s command1 SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s command1 SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 328s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 343s Creating nova instance adt-noble-s390x-htsjdk-20240323-193518-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240323.img (UUID 15bd59e1-c29b-45d7-aba1-73ff15182fb5)...