0s autopkgtest [21:28:04]: starting date and time: 2024-03-22 21:28:04+0000 0s autopkgtest [21:28:04]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [21:28:04]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.so9qasnc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:bcftools --apt-upgrade hisat2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=bcftools/1.19-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-3.secgroup --name adt-noble-s390x-hisat2-20240322-212804-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 80s autopkgtest [21:29:24]: testbed dpkg architecture: s390x 80s autopkgtest [21:29:24]: testbed apt version: 2.7.12 80s autopkgtest [21:29:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 81s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 81s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [58.8 kB] 82s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4041 kB] 82s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [498 kB] 82s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 82s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [665 kB] 82s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 82s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 82s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 82s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4153 kB] 83s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 83s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.1 kB] 83s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 84s Fetched 9598 kB in 3s (3286 kB/s) 85s Reading package lists... 87s Reading package lists... 88s Building dependency tree... 88s Reading state information... 88s Calculating upgrade... 88s The following packages will be upgraded: 88s cloud-init debianutils fonts-ubuntu-console python3-markupsafe 88s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s Need to get 719 kB of archives. 88s After this operation, 11.3 kB disk space will be freed. 88s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x debianutils s390x 5.17 [90.1 kB] 88s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 88s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x python3-markupsafe s390x 2.1.5-1build1 [12.8 kB] 88s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x cloud-init all 24.1.2-0ubuntu1 [597 kB] 89s Preconfiguring packages ... 89s Fetched 719 kB in 1s (1122 kB/s) 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 89s Preparing to unpack .../debianutils_5.17_s390x.deb ... 89s Unpacking debianutils (5.17) over (5.16) ... 89s Setting up debianutils (5.17) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52171 files and directories currently installed.) 89s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 89s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 89s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_s390x.deb ... 89s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 89s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 89s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 89s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 89s Setting up cloud-init (24.1.2-0ubuntu1) ... 91s Setting up python3-markupsafe (2.1.5-1build1) ... 91s Processing triggers for man-db (2.12.0-3) ... 91s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Unknown architecture, assuming PC-style ttyS0 93s sh: Attempting to set up Debian/Ubuntu apt sources automatically 93s sh: Distribution appears to be Ubuntu 93s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s eatmydata is already the newest version (131-1). 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s dbus is already the newest version (1.14.10-4ubuntu1). 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s rng-tools-debian is already the newest version (2.4). 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s The following packages will be REMOVED: 95s cloud-init* python3-configobj* python3-debconf* 95s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 95s After this operation, 3256 kB disk space will be freed. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 95s Removing cloud-init (24.1.2-0ubuntu1) ... 96s Removing python3-configobj (5.0.8-3) ... 96s Removing python3-debconf (1.5.86) ... 96s Processing triggers for man-db (2.12.0-3) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51781 files and directories currently installed.) 96s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 96s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 97s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 97s invoke-rc.d: policy-rc.d denied execution of try-restart. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s linux-generic is already the newest version (6.8.0-11.11+1). 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 97s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 98s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 99s Reading package lists... 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 100s Calculating upgrade... 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s autopkgtest [21:29:44]: rebooting testbed after setup commands that affected boot 114s autopkgtest [21:29:58]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 117s autopkgtest [21:30:01]: @@@@@@@@@@@@@@@@@@@@ apt-source hisat2 121s Get:1 http://ftpmaster.internal/ubuntu noble/universe hisat2 2.2.1-4 (dsc) [2129 B] 121s Get:2 http://ftpmaster.internal/ubuntu noble/universe hisat2 2.2.1-4 (tar) [6761 kB] 121s Get:3 http://ftpmaster.internal/ubuntu noble/universe hisat2 2.2.1-4 (diff) [29.1 kB] 121s gpgv: Signature made Fri Oct 14 18:23:54 2022 UTC 121s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 121s gpgv: issuer "tille@debian.org" 121s gpgv: Can't check signature: No public key 121s dpkg-source: warning: cannot verify inline signature for ./hisat2_2.2.1-4.dsc: no acceptable signature found 122s autopkgtest [21:30:06]: testing package hisat2 version 2.2.1-4 122s autopkgtest [21:30:06]: build not needed 126s autopkgtest [21:30:10]: test run-unit-tests: preparing testbed 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Starting pkgProblemResolver with broken count: 1 128s Starting 2 pkgProblemResolver with broken count: 1 128s Investigating (0) autopkgtest-satdep:s390x < none -> 0 @un puN Ib > 128s Broken autopkgtest-satdep:s390x Depends on hisat2:s390x < none | 2.2.1-4 @un uH > 128s Considering hisat2:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 128s Re-Instated hisat2:s390x 128s Broken autopkgtest-satdep:s390x Depends on python3-hisat2:s390x < none | 2.2.1-4 @un uH > 128s Considering python3-hisat2:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 128s Re-Instated python3-hisat2:s390x 128s Broken autopkgtest-satdep:s390x Depends on samtools:s390x < none | 1.19.2-1 @un uH > 128s Considering samtools:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 128s Re-Instated libdeflate0:s390x 128s Re-Instated libhtscodecs2:s390x 128s Re-Instated libhts3:s390x 128s Re-Instated samtools:s390x 128s Broken autopkgtest-satdep:s390x Depends on bcftools:s390x < none @un H > 128s Done 128s Some packages could not be installed. This may mean that you have 128s requested an impossible situation or if you are using the unstable 128s distribution that some required packages have not yet been created 128s or been moved out of Incoming. 128s The following information may help to resolve the situation: 128s 128s The following packages have unmet dependencies: 129s autopkgtest-satdep : Depends: bcftools but it is not installable 129s E: Unable to correct problems, you have held broken packages. 129s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s Starting pkgProblemResolver with broken count: 1 130s Starting 2 pkgProblemResolver with broken count: 1 130s Investigating (0) autopkgtest-satdep:s390x < none -> 0 @un puN Ib > 130s Broken autopkgtest-satdep:s390x Depends on hisat2:s390x < none | 2.2.1-4 @un uH > 130s Considering hisat2:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 130s Re-Instated hisat2:s390x 130s Broken autopkgtest-satdep:s390x Depends on python3-hisat2:s390x < none | 2.2.1-4 @un uH > 130s Considering python3-hisat2:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 130s Re-Instated python3-hisat2:s390x 130s Broken autopkgtest-satdep:s390x Depends on samtools:s390x < none | 1.19.2-1 @un uH > 130s Considering samtools:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 130s Re-Instated libdeflate0:s390x 130s Re-Instated libhtscodecs2:s390x 130s Re-Instated libhts3:s390x 130s Re-Instated samtools:s390x 130s Broken autopkgtest-satdep:s390x Depends on bcftools:s390x < none @un H > 130s Done 130s Some packages could not be installed. This may mean that you have 130s requested an impossible situation or if you are using the unstable 130s distribution that some required packages have not yet been created 130s or been moved out of Incoming. 130s The following information may help to resolve the situation: 130s 130s The following packages have unmet dependencies: 130s autopkgtest-satdep : Depends: bcftools but it is not installable 130s E: Unable to correct problems, you have held broken packages. 130s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Package bcftools is not available, but is referred to by another package. 130s This may mean that the package is missing, has been obsoleted, or 130s is only available from another source 130s 130s E: Package 'bcftools' has no installation candidate 130s run-unit-tests FAIL badpkg 130s blame: hisat2 130s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 130s autopkgtest [21:30:14]: @@@@@@@@@@@@@@@@@@@@ summary 130s run-unit-tests FAIL badpkg 130s blame: hisat2 130s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 249s Creating nova instance adt-noble-s390x-hisat2-20240322-212804-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240321.img (UUID f7ee8f0f-480f-4014-94f0-3be2a19e259d)...