0s autopkgtest [19:44:54]: starting date and time: 2024-03-25 19:44:54+0000 0s autopkgtest [19:44:54]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [19:44:54]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.aihxjyfn/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:fastqtl,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl,src:r-base --apt-upgrade fastqtl --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=fastqtl/2.184+v7+dfsg-4build2 curl/8.5.0-2ubuntu8 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2 r-base/4.3.3-2build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-16.secgroup --name adt-noble-s390x-fastqtl-20240325-194454-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 100s autopkgtest [19:46:34]: testbed dpkg architecture: s390x 100s autopkgtest [19:46:34]: testbed apt version: 2.7.12 100s autopkgtest [19:46:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 101s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [7608 B] 102s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [497 kB] 102s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.0 kB] 102s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3992 kB] 105s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [693 kB] 105s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 105s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 105s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 105s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4136 kB] 106s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 106s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [47.8 kB] 106s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 108s Fetched 9558 kB in 6s (1532 kB/s) 108s Reading package lists... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Calculating upgrade... 112s The following packages will be REMOVED: 112s libssl3 112s The following NEW packages will be installed: 112s libssl3t64 112s The following packages have been kept back: 112s curl 112s The following packages will be upgraded: 112s openssl 112s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 112s Need to get 2685 kB of archives. 112s After this operation, 239 kB of additional disk space will be used. 112s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB] 113s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB] 114s Fetched 2685 kB in 2s (1375 kB/s) 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 114s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ... 114s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 114s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 114s wget depends on libssl3 (>= 3.0.0). 114s tnftp depends on libssl3 (>= 3.0.0). 114s tcpdump depends on libssl3 (>= 3.0.0). 114s systemd-resolved depends on libssl3 (>= 3.0.0). 114s systemd depends on libssl3 (>= 3.0.0). 114s sudo depends on libssl3 (>= 3.0.0). 114s s390-tools depends on libssl3 (>= 3.0.0). 114s rsync depends on libssl3 (>= 3.0.0). 114s python3-cryptography depends on libssl3 (>= 3.0.0). 114s openssh-server depends on libssl3 (>= 3.0.10). 114s openssh-client depends on libssl3 (>= 3.0.10). 114s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 114s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 114s libssh-4:s390x depends on libssl3 (>= 3.0.0). 114s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 114s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 114s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 114s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 114s libnvme1 depends on libssl3 (>= 3.0.0). 114s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 114s libkmod2:s390x depends on libssl3 (>= 3.0.0). 114s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 114s libcurl4:s390x depends on libssl3 (>= 3.0.0). 114s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 114s kmod depends on libssl3 (>= 3.0.0). 114s dhcpcd-base depends on libssl3 (>= 3.0.0). 114s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 114s 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 114s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 114s Selecting previously unselected package libssl3t64:s390x. 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52159 files and directories currently installed.) 114s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ... 114s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ... 114s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ... 114s Setting up openssl (3.0.13-0ubuntu2) ... 114s Processing triggers for man-db (2.12.0-3) ... 114s Processing triggers for libc-bin (2.39-0ubuntu6) ... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 116s Unknown architecture, assuming PC-style ttyS0 116s sh: Attempting to set up Debian/Ubuntu apt sources automatically 116s sh: Distribution appears to be Ubuntu 116s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s eatmydata is already the newest version (131-1). 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s dbus is already the newest version (1.14.10-4ubuntu1). 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s rng-tools-debian is already the newest version (2.4). 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s The following packages will be REMOVED: 118s cloud-init* python3-configobj* python3-debconf* 118s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 118s After this operation, 3256 kB disk space will be freed. 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52172 files and directories currently installed.) 118s Removing cloud-init (24.1.2-0ubuntu1) ... 118s Removing python3-configobj (5.0.8-3) ... 118s Removing python3-debconf (1.5.86) ... 119s Processing triggers for man-db (2.12.0-3) ... 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51783 files and directories currently installed.) 119s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 119s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 119s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 119s invoke-rc.d: policy-rc.d denied execution of try-restart. 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s linux-generic is already the newest version (6.8.0-11.11+1). 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 120s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 120s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 122s Reading package lists... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s Calculating upgrade... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [19:46:57]: rebooting testbed after setup commands that affected boot 142s autopkgtest [19:47:16]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 146s autopkgtest [19:47:20]: @@@@@@@@@@@@@@@@@@@@ apt-source fastqtl 152s Get:1 http://ftpmaster.internal/ubuntu noble/universe fastqtl 2.184+v7+dfsg-4build1 (dsc) [2280 B] 152s Get:2 http://ftpmaster.internal/ubuntu noble/universe fastqtl 2.184+v7+dfsg-4build1 (tar) [17.1 MB] 152s Get:3 http://ftpmaster.internal/ubuntu noble/universe fastqtl 2.184+v7+dfsg-4build1 (diff) [21.0 kB] 152s gpgv: Signature made Tue Dec 19 15:01:14 2023 UTC 152s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 152s gpgv: Can't check signature: No public key 152s dpkg-source: warning: cannot verify inline signature for ./fastqtl_2.184+v7+dfsg-4build1.dsc: no acceptable signature found 152s autopkgtest [19:47:26]: testing package fastqtl version 2.184+v7+dfsg-4build1 153s autopkgtest [19:47:27]: build not needed 160s autopkgtest [19:47:34]: test run-sample-analysis: preparing testbed 163s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s Starting pkgProblemResolver with broken count: 0 163s Starting 2 pkgProblemResolver with broken count: 0 163s Done 163s The following additional packages will be installed: 163s fastqtl fastqtl-doc libblas3 libboost-iostreams1.83.0 163s libboost-program-options1.83.0 libdeflate0 libgsl27 libgslcblas0 libhts3 163s libhtscodecs2 r-mathlib 163s Suggested packages: 163s gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html 163s Recommended packages: 163s r-cran-qvalue r-cran-tools r-cran-argparser r-base-core r-base-dev 163s The following NEW packages will be installed: 163s autopkgtest-satdep fastqtl fastqtl-doc libblas3 libboost-iostreams1.83.0 163s libboost-program-options1.83.0 libdeflate0 libgsl27 libgslcblas0 libhts3 163s libhtscodecs2 r-mathlib 163s 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 163s Need to get 22.5 MB/22.5 MB of archives. 163s After this operation, 31.3 MB of additional disk space will be used. 163s Get:1 /tmp/autopkgtest.d6nanA/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [708 B] 163s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 164s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libboost-iostreams1.83.0 s390x 1.83.0-2ubuntu1 [340 kB] 164s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libboost-program-options1.83.0 s390x 1.83.0-2ubuntu1 [418 kB] 164s Get:5 http://ftpmaster.internal/ubuntu noble/universe s390x libgslcblas0 s390x 2.7.1+dfsg-6ubuntu1 [147 kB] 164s Get:6 http://ftpmaster.internal/ubuntu noble/universe s390x libgsl27 s390x 2.7.1+dfsg-6ubuntu1 [1069 kB] 164s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 164s Get:8 http://ftpmaster.internal/ubuntu noble/universe s390x libhtscodecs2 s390x 1.6.0-1 [87.2 kB] 164s Get:9 http://ftpmaster.internal/ubuntu noble/universe s390x libhts3 s390x 1.18+ds-1 [463 kB] 164s Get:10 http://ftpmaster.internal/ubuntu noble/universe s390x r-mathlib s390x 4.3.2-1build1 [2370 kB] 164s Get:11 http://ftpmaster.internal/ubuntu noble/universe s390x fastqtl s390x 2.184+v7+dfsg-4build1 [228 kB] 164s Get:12 http://ftpmaster.internal/ubuntu noble/universe s390x fastqtl-doc all 2.184+v7+dfsg-4build1 [17.0 MB] 166s Fetched 22.5 MB in 3s (8514 kB/s) 166s Selecting previously unselected package libblas3:s390x. 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51728 files and directories currently installed.) 166s Preparing to unpack .../00-libblas3_3.12.0-3_s390x.deb ... 166s Unpacking libblas3:s390x (3.12.0-3) ... 166s Selecting previously unselected package libboost-iostreams1.83.0:s390x. 166s Preparing to unpack .../01-libboost-iostreams1.83.0_1.83.0-2ubuntu1_s390x.deb ... 166s Unpacking libboost-iostreams1.83.0:s390x (1.83.0-2ubuntu1) ... 166s Selecting previously unselected package libboost-program-options1.83.0:s390x. 166s Preparing to unpack .../02-libboost-program-options1.83.0_1.83.0-2ubuntu1_s390x.deb ... 166s Unpacking libboost-program-options1.83.0:s390x (1.83.0-2ubuntu1) ... 166s Selecting previously unselected package libgslcblas0:s390x. 166s Preparing to unpack .../03-libgslcblas0_2.7.1+dfsg-6ubuntu1_s390x.deb ... 166s Unpacking libgslcblas0:s390x (2.7.1+dfsg-6ubuntu1) ... 166s Selecting previously unselected package libgsl27:s390x. 166s Preparing to unpack .../04-libgsl27_2.7.1+dfsg-6ubuntu1_s390x.deb ... 166s Unpacking libgsl27:s390x (2.7.1+dfsg-6ubuntu1) ... 166s Selecting previously unselected package libdeflate0:s390x. 166s Preparing to unpack .../05-libdeflate0_1.19-1_s390x.deb ... 166s Unpacking libdeflate0:s390x (1.19-1) ... 166s Selecting previously unselected package libhtscodecs2:s390x. 166s Preparing to unpack .../06-libhtscodecs2_1.6.0-1_s390x.deb ... 166s Unpacking libhtscodecs2:s390x (1.6.0-1) ... 166s Selecting previously unselected package libhts3:s390x. 166s Preparing to unpack .../07-libhts3_1.18+ds-1_s390x.deb ... 166s Unpacking libhts3:s390x (1.18+ds-1) ... 166s Selecting previously unselected package r-mathlib. 166s Preparing to unpack .../08-r-mathlib_4.3.2-1build1_s390x.deb ... 166s Unpacking r-mathlib (4.3.2-1build1) ... 166s Selecting previously unselected package fastqtl. 166s Preparing to unpack .../09-fastqtl_2.184+v7+dfsg-4build1_s390x.deb ... 166s Unpacking fastqtl (2.184+v7+dfsg-4build1) ... 167s Selecting previously unselected package fastqtl-doc. 167s Preparing to unpack .../10-fastqtl-doc_2.184+v7+dfsg-4build1_all.deb ... 167s Unpacking fastqtl-doc (2.184+v7+dfsg-4build1) ... 167s Selecting previously unselected package autopkgtest-satdep. 167s Preparing to unpack .../11-1-autopkgtest-satdep.deb ... 167s Unpacking autopkgtest-satdep (0) ... 167s Setting up libhtscodecs2:s390x (1.6.0-1) ... 167s Setting up libboost-program-options1.83.0:s390x (1.83.0-2ubuntu1) ... 167s Setting up fastqtl-doc (2.184+v7+dfsg-4build1) ... 167s Setting up libgslcblas0:s390x (2.7.1+dfsg-6ubuntu1) ... 167s Setting up libdeflate0:s390x (1.19-1) ... 167s Setting up libgsl27:s390x (2.7.1+dfsg-6ubuntu1) ... 167s Setting up libblas3:s390x (3.12.0-3) ... 167s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 167s Setting up libboost-iostreams1.83.0:s390x (1.83.0-2ubuntu1) ... 167s Setting up r-mathlib (4.3.2-1build1) ... 167s Setting up libhts3:s390x (1.18+ds-1) ... 167s Setting up fastqtl (2.184+v7+dfsg-4build1) ... 167s Setting up autopkgtest-satdep (0) ... 167s Processing triggers for man-db (2.12.0-3) ... 167s Processing triggers for libc-bin (2.39-0ubuntu6) ... 170s (Reading database ... 51860 files and directories currently installed.) 170s Removing autopkgtest-satdep (0) ... 170s autopkgtest [19:47:44]: test run-sample-analysis: [----------------------- 171s covariates.txt.gz 171s genotypes.vcf.gz 171s genotypes.vcf.gz.tbi 171s interaction.txt 171s phenotypes.bed.gz 171s phenotypes.bed.gz.tbi 171s 171s Fast QTL 171s * Authors : Olivier DELANEAU, Halit ONGEN, Alfonso BUIL & Manolis DERMITZAKIS 171s * Contact : olivier.delaneau@gmail.com 171s * Webpage : http://fastqtl.sourceforge.net/ 171s * Version : v2.184_gtex 171s 171s Perform permutation based interaction analysis (used to calculate corrected p-values for MPs) 171s * Perform 100 permutations 171s * Test interaction with term from [interaction.txt] 171s * Random number generator is seeded with 1 171s * Considering variants within 1e+06 bp of the MPs 171s * Using minor allele frequency threshold = 0.0000 171s * Using minor allele sample threshold = 0 171s * Using INFO field AF threshold = 0.0000 171s * Chunk processed 1 / 100 171s 171s Scanning phenotype data in [phenotypes.bed.gz] 171s * 364 phenotypes 171s 171s Reading phenotype data in [phenotypes.bed.gz] 171s * region = 22:17517460-17646177 171s * 373 samples included 171s * 4 phenotypes included 171s 171s Reading genotype data in [genotypes.vcf.gz] in VCF format 171s * region = 22:16517460-18646177 171s * 373 samples included 171s * 8580 sites included 171s 171s Reading covariates in [covariates.txt.gz] 171s * 373 samples included 171s * 4 covariate(s) included 171s 171s Reading interaction term in [interaction.txt] 171s * 373 samples included 171s 171s Imputing missing genotypes 171s 171s Imputing missing phenotypes 171s 171s Initialize covariate 171s 171s Processing gene [ENSG00000237438.1] 171s * Number of variants in cis = 7966 186s * Beta distribution parameters = 1.0382 2287.7101 186s * Progress = 25.0% 186s 186s Processing gene [ENSG00000177663.8] 186s * Number of variants in cis = 8165 201s * Beta distribution parameters = 0.7994 2826.0721 201s * Progress = 50.0% 201s 201s Processing gene [ENSG00000183307.3] 201s * Number of variants in cis = 8279 216s * Beta distribution parameters = 0.9595 9906.5566 216s * Progress = 75.0% 216s 216s Processing gene [ENSG00000069998.8] 216s * Number of variants in cis = 8466 231s * Beta distribution parameters = 0.9606 4564.2130 231s * Progress = 100.0% 231s 231s Running time: 60 seconds 231s autopkgtest [19:48:45]: test run-sample-analysis: -----------------------] 231s autopkgtest [19:48:45]: test run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - 231s run-sample-analysis PASS 232s autopkgtest [19:48:46]: @@@@@@@@@@@@@@@@@@@@ summary 232s run-sample-analysis PASS 247s Creating nova instance adt-noble-s390x-fastqtl-20240325-194454-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-s390x-server-20240325.img (UUID 9f25d9bc-613c-4979-9452-2ea8e4d84cd0)...