0s autopkgtest [00:45:39]: starting date and time: 2024-04-19 00:45:39+0000
  0s autopkgtest [00:45:39]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline
  0s autopkgtest [00:45:39]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jc7s9310/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gsl --apt-upgrade eigensoft --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gsl/2.7.1+dfsg-6ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-s390x-16.secgroup --name adt-noble-s390x-eigensoft-20240419-004539-juju-7f2275-prod-proposed-migration-environment-3-30ac9740-047f-4d62-8936-8b56f00060ce --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/
101s autopkgtest [00:47:20]: testbed dpkg architecture: s390x
102s autopkgtest [00:47:21]: testbed apt version: 2.7.14build2
102s autopkgtest [00:47:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup
102s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2340 B]
102s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [376 kB]
103s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [12.2 kB]
103s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [54.2 kB]
103s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [95.6 kB]
103s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B]
103s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [976 B]
103s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B]
103s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [497 kB]
103s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B]
103s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B]
106s Fetched 1166 kB in 1s (1203 kB/s)
106s Reading package lists...
107s sh: 4: dhclient: not found
108s Reading package lists...
108s Building dependency tree...
108s Reading state information...
109s Calculating upgrade...
109s The following packages will be upgraded:
109s   apport apport-core-dump-handler libkeyutils1 libnuma1 make man-db
109s   netcat-openbsd numactl python3-apport python3-problem-report
109s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
109s Need to get 1783 kB of archives.
109s After this operation, 3072 B disk space will be freed.
109s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x python3-problem-report all 2.28.1-0ubuntu1 [23.8 kB]
109s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x python3-apport all 2.28.1-0ubuntu1 [92.1 kB]
109s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x apport-core-dump-handler all 2.28.1-0ubuntu1 [16.8 kB]
109s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x apport all 2.28.1-0ubuntu1 [83.5 kB]
109s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libkeyutils1 s390x 1.6.3-3build1 [9556 B]
109s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x netcat-openbsd s390x 1.226-1ubuntu2 [44.0 kB]
109s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libnuma1 s390x 2.0.18-1build1 [25.1 kB]
109s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x man-db s390x 2.12.0-4build2 [1253 kB]
110s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x make s390x 4.3-4.1build2 [196 kB]
110s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x numactl s390x 2.0.18-1build1 [40.0 kB]
113s Preconfiguring packages ...
113s Fetched 1783 kB in 2s (982 kB/s)
113s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78323 files and directories currently installed.)
113s Preparing to unpack .../0-python3-problem-report_2.28.1-0ubuntu1_all.deb ...
113s Unpacking python3-problem-report (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ...
113s Preparing to unpack .../1-python3-apport_2.28.1-0ubuntu1_all.deb ...
114s Unpacking python3-apport (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ...
114s Preparing to unpack .../2-apport-core-dump-handler_2.28.1-0ubuntu1_all.deb ...
114s Unpacking apport-core-dump-handler (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ...
114s Preparing to unpack .../3-apport_2.28.1-0ubuntu1_all.deb ...
114s Unpacking apport (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ...
114s Preparing to unpack .../4-libkeyutils1_1.6.3-3build1_s390x.deb ...
114s Unpacking libkeyutils1:s390x (1.6.3-3build1) over (1.6.3-3) ...
114s Preparing to unpack .../5-netcat-openbsd_1.226-1ubuntu2_s390x.deb ...
114s Unpacking netcat-openbsd (1.226-1ubuntu2) over (1.226-1ubuntu1) ...
114s Preparing to unpack .../6-libnuma1_2.0.18-1build1_s390x.deb ...
114s Unpacking libnuma1:s390x (2.0.18-1build1) over (2.0.18-1) ...
114s Preparing to unpack .../7-man-db_2.12.0-4build2_s390x.deb ...
114s Unpacking man-db (2.12.0-4build2) over (2.12.0-4build1) ...
114s Preparing to unpack .../8-make_4.3-4.1build2_s390x.deb ...
114s Unpacking make (4.3-4.1build2) over (4.3-4.1build1) ...
114s Preparing to unpack .../9-numactl_2.0.18-1build1_s390x.deb ...
114s Unpacking numactl (2.0.18-1build1) over (2.0.18-1) ...
114s Setting up libkeyutils1:s390x (1.6.3-3build1) ...
114s Setting up python3-problem-report (2.28.1-0ubuntu1) ...
114s Setting up netcat-openbsd (1.226-1ubuntu2) ...
114s Setting up man-db (2.12.0-4build2) ...
114s Updating database of manual pages ...
116s man-db.service is a disabled or a static unit not running, not starting it.
116s Setting up python3-apport (2.28.1-0ubuntu1) ...
116s Setting up make (4.3-4.1build2) ...
116s Setting up libnuma1:s390x (2.0.18-1build1) ...
116s Setting up numactl (2.0.18-1build1) ...
116s Setting up apport-core-dump-handler (2.28.1-0ubuntu1) ...
117s Setting up apport (2.28.1-0ubuntu1) ...
117s Installing new version of config file /etc/apport/crashdb.conf ...
118s apport-autoreport.service is a disabled or a static unit not running, not starting it.
118s Processing triggers for libc-bin (2.39-0ubuntu8) ...
127s Reading package lists...
127s Building dependency tree...
127s Reading state information...
128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
128s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
128s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
128s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
128s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
129s Reading package lists...
129s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s Calculating upgrade...
130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
131s autopkgtest [00:47:50]: rebooting testbed after setup commands that affected boot
175s autopkgtest [00:48:34]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr  4 21:54:17 UTC 2024
178s autopkgtest [00:48:37]: @@@@@@@@@@@@@@@@@@@@ apt-source eigensoft
180s Get:1 http://ftpmaster.internal/ubuntu noble/universe eigensoft 8.0.0+dfsg-2 (dsc) [2132 B]
180s Get:2 http://ftpmaster.internal/ubuntu noble/universe eigensoft 8.0.0+dfsg-2 (tar) [231 kB]
180s Get:3 http://ftpmaster.internal/ubuntu noble/universe eigensoft 8.0.0+dfsg-2 (diff) [6240 B]
180s gpgv: Signature made Wed Jan 31 18:19:21 2024 UTC
180s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
180s gpgv:                issuer "tille@debian.org"
180s gpgv: Can't check signature: No public key
180s dpkg-source: warning: cannot verify inline signature for ./eigensoft_8.0.0+dfsg-2.dsc: no acceptable signature found
180s autopkgtest [00:48:39]: testing package eigensoft version 8.0.0+dfsg-2
180s autopkgtest [00:48:39]: build not needed
181s autopkgtest [00:48:40]: test test-working: preparing testbed
183s Reading package lists...
183s Building dependency tree...
183s Reading state information...
183s Starting pkgProblemResolver with broken count: 0
183s Starting 2 pkgProblemResolver with broken count: 0
183s Done
183s The following additional packages will be installed:
183s   eigensoft libblas3 libgfortran5 libgsl27 libgslcblas0 liblapack3 liblapacke
183s   libtmglib3
183s Suggested packages:
183s   gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
183s Recommended packages:
183s   gnuplot
183s The following NEW packages will be installed:
183s   autopkgtest-satdep eigensoft libblas3 libgfortran5 libgsl27 libgslcblas0
183s   liblapack3 liblapacke libtmglib3
183s 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded.
183s Need to get 5996 kB/5996 kB of archives.
183s After this operation, 18.6 MB of additional disk space will be used.
183s Get:1 /tmp/autopkgtest.xiCEWa/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B]
184s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3build1 [245 kB]
184s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libgslcblas0 s390x 2.7.1+dfsg-6ubuntu2 [150 kB]
184s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libgsl27 s390x 2.7.1+dfsg-6ubuntu2 [1084 kB]
185s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240412-0ubuntu1 [600 kB]
185s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB]
186s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libtmglib3 s390x 3.12.0-3build1 [153 kB]
186s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x liblapacke s390x 3.12.0-3build1 [437 kB]
186s Get:9 http://ftpmaster.internal/ubuntu noble/universe s390x eigensoft s390x 8.0.0+dfsg-2 [351 kB]
186s Fetched 5996 kB in 3s (2218 kB/s)
186s Selecting previously unselected package libblas3:s390x.
187s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78322 files and directories currently installed.)
187s Preparing to unpack .../0-libblas3_3.12.0-3build1_s390x.deb ...
187s Unpacking libblas3:s390x (3.12.0-3build1) ...
187s Selecting previously unselected package libgslcblas0:s390x.
187s Preparing to unpack .../1-libgslcblas0_2.7.1+dfsg-6ubuntu2_s390x.deb ...
187s Unpacking libgslcblas0:s390x (2.7.1+dfsg-6ubuntu2) ...
187s Selecting previously unselected package libgsl27:s390x.
187s Preparing to unpack .../2-libgsl27_2.7.1+dfsg-6ubuntu2_s390x.deb ...
187s Unpacking libgsl27:s390x (2.7.1+dfsg-6ubuntu2) ...
187s Selecting previously unselected package libgfortran5:s390x.
187s Preparing to unpack .../3-libgfortran5_14-20240412-0ubuntu1_s390x.deb ...
187s Unpacking libgfortran5:s390x (14-20240412-0ubuntu1) ...
187s Selecting previously unselected package liblapack3:s390x.
187s Preparing to unpack .../4-liblapack3_3.12.0-3build1_s390x.deb ...
187s Unpacking liblapack3:s390x (3.12.0-3build1) ...
187s Selecting previously unselected package libtmglib3:s390x.
187s Preparing to unpack .../5-libtmglib3_3.12.0-3build1_s390x.deb ...
187s Unpacking libtmglib3:s390x (3.12.0-3build1) ...
187s Selecting previously unselected package liblapacke:s390x.
187s Preparing to unpack .../6-liblapacke_3.12.0-3build1_s390x.deb ...
187s Unpacking liblapacke:s390x (3.12.0-3build1) ...
187s Selecting previously unselected package eigensoft.
187s Preparing to unpack .../7-eigensoft_8.0.0+dfsg-2_s390x.deb ...
187s Unpacking eigensoft (8.0.0+dfsg-2) ...
187s Selecting previously unselected package autopkgtest-satdep.
187s Preparing to unpack .../8-1-autopkgtest-satdep.deb ...
187s Unpacking autopkgtest-satdep (0) ...
187s Setting up libgslcblas0:s390x (2.7.1+dfsg-6ubuntu2) ...
187s Setting up libgsl27:s390x (2.7.1+dfsg-6ubuntu2) ...
187s Setting up libblas3:s390x (3.12.0-3build1) ...
187s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
187s Setting up libgfortran5:s390x (14-20240412-0ubuntu1) ...
187s Setting up liblapack3:s390x (3.12.0-3build1) ...
187s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
187s Setting up libtmglib3:s390x (3.12.0-3build1) ...
187s Setting up liblapacke:s390x (3.12.0-3build1) ...
187s Setting up eigensoft (8.0.0+dfsg-2) ...
187s Setting up autopkgtest-satdep (0) ...
187s Processing triggers for man-db (2.12.0-4build2) ...
187s Processing triggers for libc-bin (2.39-0ubuntu8) ...
190s (Reading database ... 78586 files and directories currently installed.)
190s Removing autopkgtest-satdep (0) ...
190s autopkgtest [00:48:49]: test test-working: [-----------------------
191s error: eigenstrat do not print usage information
191s error: eigenstratQTL do not print usage information
191s error: pca do not print usage information
191s autopkgtest [00:48:50]: test test-working: -----------------------]
192s test-working         PASS
192s autopkgtest [00:48:51]: test test-working:  - - - - - - - - - - results - - - - - - - - - -
192s autopkgtest [00:48:51]: @@@@@@@@@@@@@@@@@@@@ summary
192s test-working         PASS
206s Creating nova instance adt-noble-s390x-eigensoft-20240419-004539-juju-7f2275-prod-proposed-migration-environment-3-30ac9740-047f-4d62-8936-8b56f00060ce from image adt/ubuntu-noble-s390x-server-20240418.img (UUID 85e53509-ea4e-4742-afdb-a30c7e328507)...