0s autopkgtest [09:26:46]: starting date and time: 2024-03-23 09:26:46+0000 0s autopkgtest [09:26:46]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [09:26:46]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k_i6kpcr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade circlator --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-22.secgroup --name adt-noble-s390x-circlator-20240323-092646-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 114s autopkgtest [09:28:40]: testbed dpkg architecture: s390x 114s autopkgtest [09:28:40]: testbed apt version: 2.7.12 114s autopkgtest [09:28:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 115s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 115s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 115s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 115s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3972 kB] 116s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 116s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [651 kB] 116s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 116s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 116s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 116s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4148 kB] 116s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 116s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB] 116s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 118s Fetched 9504 kB in 3s (3680 kB/s) 118s Reading package lists... 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s Calculating upgrade... 121s The following packages will be REMOVED: 121s libssl3 121s The following NEW packages will be installed: 121s libssl3t64 121s The following packages have been kept back: 121s curl 121s The following packages will be upgraded: 121s libbsd0 libc-bin libc6 locales openssl 122s 5 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 122s Need to get 10.5 MB of archives. 122s After this operation, 241 kB of additional disk space will be used. 122s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libc6 s390x 2.39-0ubuntu6 [2847 kB] 122s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc-bin s390x 2.39-0ubuntu6 [654 kB] 122s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB] 122s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB] 122s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1 [46.7 kB] 122s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x locales all 2.39-0ubuntu6 [4232 kB] 123s Preconfiguring packages ... 123s Fetched 10.5 MB in 1s (8055 kB/s) 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 123s Preparing to unpack .../libc6_2.39-0ubuntu6_s390x.deb ... 123s Unpacking libc6:s390x (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 123s Setting up libc6:s390x (2.39-0ubuntu6) ... 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 124s Preparing to unpack .../libc-bin_2.39-0ubuntu6_s390x.deb ... 124s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 124s Setting up libc-bin (2.39-0ubuntu6) ... 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 124s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ... 124s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 124s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 124s wget depends on libssl3 (>= 3.0.0). 124s tnftp depends on libssl3 (>= 3.0.0). 124s tcpdump depends on libssl3 (>= 3.0.0). 124s systemd-resolved depends on libssl3 (>= 3.0.0). 124s systemd depends on libssl3 (>= 3.0.0). 124s sudo depends on libssl3 (>= 3.0.0). 124s s390-tools depends on libssl3 (>= 3.0.0). 124s rsync depends on libssl3 (>= 3.0.0). 124s python3-cryptography depends on libssl3 (>= 3.0.0). 124s openssh-server depends on libssl3 (>= 3.0.10). 124s openssh-client depends on libssl3 (>= 3.0.10). 124s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 124s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 124s libssh-4:s390x depends on libssl3 (>= 3.0.0). 124s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 124s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 124s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 124s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 124s libnvme1 depends on libssl3 (>= 3.0.0). 124s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 124s libkmod2:s390x depends on libssl3 (>= 3.0.0). 124s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 124s libcurl4:s390x depends on libssl3 (>= 3.0.0). 124s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 124s kmod depends on libssl3 (>= 3.0.0). 124s dhcpcd-base depends on libssl3 (>= 3.0.0). 124s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 124s 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 124s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 124s Selecting previously unselected package libssl3t64:s390x. 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52159 files and directories currently installed.) 124s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ... 124s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ... 124s Preparing to unpack .../libbsd0_0.12.1-1_s390x.deb ... 124s Unpacking libbsd0:s390x (0.12.1-1) over (0.11.8-1) ... 124s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 124s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 125s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ... 125s Setting up locales (2.39-0ubuntu6) ... 125s Generating locales (this might take a while)... 127s en_US.UTF-8... done 127s Generation complete. 127s Setting up openssl (3.0.13-0ubuntu2) ... 127s Setting up libbsd0:s390x (0.12.1-1) ... 127s Processing triggers for man-db (2.12.0-3) ... 127s Processing triggers for libc-bin (2.39-0ubuntu6) ... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 128s Unknown architecture, assuming PC-style ttyS0 128s sh: Attempting to set up Debian/Ubuntu apt sources automatically 128s sh: Distribution appears to be Ubuntu 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s eatmydata is already the newest version (131-1). 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s dbus is already the newest version (1.14.10-4ubuntu1). 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s rng-tools-debian is already the newest version (2.4). 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 131s The following packages will be REMOVED: 131s cloud-init* python3-configobj* python3-debconf* 131s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 131s After this operation, 3256 kB disk space will be freed. 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52172 files and directories currently installed.) 131s Removing cloud-init (24.1.2-0ubuntu1) ... 131s Removing python3-configobj (5.0.8-3) ... 131s Removing python3-debconf (1.5.86) ... 131s Processing triggers for man-db (2.12.0-3) ... 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51783 files and directories currently installed.) 132s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 132s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 132s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 132s invoke-rc.d: policy-rc.d denied execution of try-restart. 132s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s linux-generic is already the newest version (6.8.0-11.11+1). 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 133s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 133s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 135s Reading package lists... 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s Calculating upgrade... 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s autopkgtest [09:29:02]: rebooting testbed after setup commands that affected boot 153s autopkgtest [09:29:19]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 156s autopkgtest [09:29:22]: @@@@@@@@@@@@@@@@@@@@ apt-source circlator 158s Get:1 http://ftpmaster.internal/ubuntu noble/universe circlator 1.5.6-11 (dsc) [1672 B] 158s Get:2 http://ftpmaster.internal/ubuntu noble/universe circlator 1.5.6-11 (tar) [5724 kB] 158s Get:3 http://ftpmaster.internal/ubuntu noble/universe circlator 1.5.6-11 (diff) [6152 B] 158s gpgv: Signature made Sat Dec 2 21:39:17 2023 UTC 158s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 158s gpgv: Can't check signature: No public key 158s dpkg-source: warning: cannot verify inline signature for ./circlator_1.5.6-11.dsc: no acceptable signature found 158s autopkgtest [09:29:24]: testing package circlator version 1.5.6-11 159s autopkgtest [09:29:25]: build not needed 160s autopkgtest [09:29:26]: test run-unit-test: preparing testbed 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s Starting pkgProblemResolver with broken count: 1 162s Starting 2 pkgProblemResolver with broken count: 1 162s Investigating (0) circlator:s390x < none -> 1.5.6-11 @un puN Ib > 162s Broken circlator:s390x Depends on fastaq:s390x < none | 3.17.0-6 @un uH > 162s Considering fastaq:s390x 1 as a solution to circlator:s390x 0 162s Re-Instated libdeflate0:s390x 162s Re-Instated libhtscodecs2:s390x 162s Re-Instated libhts3:s390x 162s Re-Instated samtools:s390x 162s Re-Instated fastaq:s390x 162s Broken circlator:s390x Depends on python3-openpyxl:s390x < none | 3.1.2+dfsg-6 @un uH > 162s Considering python3-openpyxl:s390x 1 as a solution to circlator:s390x 0 162s Re-Instated python3-et-xmlfile:s390x 162s Re-Instated libxslt1.1:s390x 162s Re-Instated python3-lxml:s390x 162s Re-Instated python3-openpyxl:s390x 162s Broken circlator:s390x Depends on python3-pymummer:s390x < none | 0.11.0-4 @un uH > 162s Considering python3-pymummer:s390x 1 as a solution to circlator:s390x 0 162s Re-Instated mummer:s390x 162s Re-Instated python3-pymummer:s390x 162s Broken circlator:s390x Depends on python3-pysam:s390x < none @un H > 162s Broken circlator:s390x Depends on prodigal:s390x < none | 1:2.6.3-6 @un uH > 162s Considering prodigal:s390x 1 as a solution to circlator:s390x 0 162s Re-Instated prodigal:s390x 162s Broken circlator:s390x Depends on bwa:s390x < none | 0.7.17-7 @un uH > 162s Considering bwa:s390x 1 as a solution to circlator:s390x 0 162s Re-Instated bwa:s390x 162s Broken circlator:s390x Depends on canu:s390x < none | 2.2+dfsg-5 @un uH > 162s Considering canu:s390x 1 as a solution to circlator:s390x 0 162s Re-Instated libgomp1:s390x 162s Re-Instated libsnappy1v5:s390x 162s Re-Instated libfilesys-df-perl:s390x 162s Re-Instated ca-certificates-java:s390x 162s Re-Instated java-common:s390x 162s Re-Instated libavahi-common-data:s390x 162s Re-Instated libavahi-common3:s390x 162s Re-Instated libavahi-client3:s390x 162s Re-Instated libcups2:s390x 162s Re-Instated liblcms2-2:s390x 162s Re-Instated libjpeg-turbo8:s390x 162s Re-Instated libjpeg8:s390x 162s Re-Instated libfreetype6:s390x 162s Re-Instated fonts-dejavu-mono:s390x 162s Re-Instated fonts-dejavu-core:s390x 162s Re-Instated fontconfig-config:s390x 162s Re-Instated libfontconfig1:s390x 162s Re-Instated libasound2-data:s390x 162s Re-Instated libasound2:s390x 162s Re-Instated libgraphite2-3:s390x 162s Re-Instated libharfbuzz0b:s390x 162s Re-Instated libpcsclite1:s390x 162s Re-Instated openjdk-21-jre-headless:s390x 162s Re-Instated default-jre-headless:s390x 162s Re-Instated binfmt-support:s390x 162s Re-Instated fastjar:s390x 162s Re-Instated jarwrapper:s390x 162s Re-Instated libapache-pom-java:s390x 162s Re-Instated libcommons-parent-java:s390x 162s Re-Instated libcommons-compress-java:s390x 162s Re-Instated libfastutil-java:s390x 162s Re-Instated libatinject-jsr330-api-java:s390x 162s Re-Instated liberror-prone-java:s390x 162s Re-Instated libjsr305-java:s390x 162s Re-Instated libguava-java:s390x 162s Re-Instated jaligner:s390x 162s Re-Instated libssw-java:s390x 162s Re-Instated mhap:s390x 162s Re-Instated aglfn:s390x 162s Re-Instated gnuplot-data:s390x 162s Re-Instated libpixman-1-0:s390x 162s Re-Instated libxcb-render0:s390x 162s Re-Instated libxcb-shm0:s390x 162s Re-Instated libxrender1:s390x 162s Re-Instated libcairo2:s390x 162s Re-Instated libjbig0:s390x 162s Re-Instated libsharpyuv0:s390x 162s Re-Instated libwebp7:s390x 162s Re-Instated libtiff6:s390x 162s Re-Instated libxpm4:s390x 162s Re-Instated libgd3:s390x 162s Re-Instated liblua5.4-0:s390x 162s Re-Instated fontconfig:s390x 162s Re-Instated libthai-data:s390x 162s Re-Instated libdatrie1:s390x 162s Re-Instated libthai0:s390x 162s Re-Instated libpango-1.0-0:s390x 162s Re-Instated libpangoft2-1.0-0:s390x 162s Re-Instated libpangocairo-1.0-0:s390x 162s Re-Instated gnuplot-nox:s390x 162s Re-Instated canu:s390x 162s Done 162s Some packages could not be installed. This may mean that you have 162s requested an impossible situation or if you are using the unstable 162s distribution that some required packages have not yet been created 162s or been moved out of Incoming. 162s The following information may help to resolve the situation: 162s 162s The following packages have unmet dependencies: 163s circlator : Depends: python3-pysam but it is not installable 163s E: Unable to correct problems, you have held broken packages. 163s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 163s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s Starting pkgProblemResolver with broken count: 1 164s Starting 2 pkgProblemResolver with broken count: 1 164s Investigating (0) circlator:s390x < none -> 1.5.6-11 @un puN Ib > 164s Broken circlator:s390x Depends on fastaq:s390x < none | 3.17.0-6 @un uH > 164s Considering fastaq:s390x 1 as a solution to circlator:s390x 0 164s Re-Instated libdeflate0:s390x 164s Re-Instated libhtscodecs2:s390x 164s Re-Instated libhts3:s390x 164s Re-Instated samtools:s390x 164s Re-Instated fastaq:s390x 164s Broken circlator:s390x Depends on python3-openpyxl:s390x < none | 3.1.2+dfsg-6 @un uH > 164s Considering python3-openpyxl:s390x 1 as a solution to circlator:s390x 0 164s Re-Instated python3-et-xmlfile:s390x 164s Re-Instated libxslt1.1:s390x 164s Re-Instated python3-lxml:s390x 164s Re-Instated python3-openpyxl:s390x 164s Broken circlator:s390x Depends on python3-pymummer:s390x < none | 0.11.0-4 @un uH > 164s Considering python3-pymummer:s390x 1 as a solution to circlator:s390x 0 164s Re-Instated mummer:s390x 164s Re-Instated python3-pymummer:s390x 164s Broken circlator:s390x Depends on python3-pysam:s390x < none @un H > 164s Broken circlator:s390x Depends on prodigal:s390x < none | 1:2.6.3-6 @un uH > 164s Considering prodigal:s390x 1 as a solution to circlator:s390x 0 164s Re-Instated prodigal:s390x 164s Broken circlator:s390x Depends on bwa:s390x < none | 0.7.17-7 @un uH > 164s Considering bwa:s390x 1 as a solution to circlator:s390x 0 164s Re-Instated bwa:s390x 164s Broken circlator:s390x Depends on canu:s390x < none | 2.2+dfsg-5 @un uH > 164s Considering canu:s390x 1 as a solution to circlator:s390x 0 164s Re-Instated libgomp1:s390x 164s Re-Instated libsnappy1v5:s390x 164s Re-Instated libfilesys-df-perl:s390x 164s Re-Instated ca-certificates-java:s390x 164s Re-Instated java-common:s390x 164s Re-Instated libavahi-common-data:s390x 164s Re-Instated libavahi-common3:s390x 164s Re-Instated libavahi-client3:s390x 164s Re-Instated libcups2:s390x 164s Re-Instated liblcms2-2:s390x 164s Re-Instated libjpeg-turbo8:s390x 164s Re-Instated libjpeg8:s390x 164s Re-Instated libfreetype6:s390x 164s Re-Instated fonts-dejavu-mono:s390x 164s Re-Instated fonts-dejavu-core:s390x 164s Re-Instated fontconfig-config:s390x 164s Re-Instated libfontconfig1:s390x 164s Re-Instated libasound2-data:s390x 164s Re-Instated libasound2:s390x 164s Re-Instated libgraphite2-3:s390x 164s Re-Instated libharfbuzz0b:s390x 164s Re-Instated libpcsclite1:s390x 164s Re-Instated openjdk-21-jre-headless:s390x 164s Re-Instated default-jre-headless:s390x 164s Re-Instated binfmt-support:s390x 164s Re-Instated fastjar:s390x 164s Re-Instated jarwrapper:s390x 164s Re-Instated libapache-pom-java:s390x 164s Re-Instated libcommons-parent-java:s390x 164s Re-Instated libcommons-compress-java:s390x 164s Re-Instated libfastutil-java:s390x 164s Re-Instated libatinject-jsr330-api-java:s390x 164s Re-Instated liberror-prone-java:s390x 164s Re-Instated libjsr305-java:s390x 164s Re-Instated libguava-java:s390x 164s Re-Instated jaligner:s390x 164s Re-Instated libssw-java:s390x 164s Re-Instated mhap:s390x 164s Re-Instated aglfn:s390x 164s Re-Instated gnuplot-data:s390x 164s Re-Instated libpixman-1-0:s390x 164s Re-Instated libxcb-render0:s390x 164s Re-Instated libxcb-shm0:s390x 164s Re-Instated libxrender1:s390x 164s Re-Instated libcairo2:s390x 164s Re-Instated libjbig0:s390x 164s Re-Instated libsharpyuv0:s390x 164s Re-Instated libwebp7:s390x 164s Re-Instated libtiff6:s390x 164s Re-Instated libxpm4:s390x 164s Re-Instated libgd3:s390x 164s Re-Instated liblua5.4-0:s390x 164s Re-Instated fontconfig:s390x 164s Re-Instated libthai-data:s390x 164s Re-Instated libdatrie1:s390x 164s Re-Instated libthai0:s390x 164s Re-Instated libpango-1.0-0:s390x 164s Re-Instated libpangoft2-1.0-0:s390x 164s Re-Instated libpangocairo-1.0-0:s390x 164s Re-Instated gnuplot-nox:s390x 164s Re-Instated canu:s390x 164s Done 164s Some packages could not be installed. This may mean that you have 164s requested an impossible situation or if you are using the unstable 164s distribution that some required packages have not yet been created 164s or been moved out of Incoming. 164s The following information may help to resolve the situation: 164s 164s The following packages have unmet dependencies: 164s circlator : Depends: python3-pysam but it is not installable 164s E: Unable to correct problems, you have held broken packages. 164s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 164s Starting pkgProblemResolver with broken count: 1 164s Starting 2 pkgProblemResolver with broken count: 1 164s Investigating (0) circlator:s390x < none -> 1.5.6-11 @un puN Ib > 164s Broken circlator:s390x Depends on fastaq:s390x < none | 3.17.0-6 @un uH > 164s Considering fastaq:s390x 1 as a solution to circlator:s390x 9999 164s Re-Instated libdeflate0:s390x 164s Re-Instated libhtscodecs2:s390x 164s Re-Instated libhts3:s390x 164s Re-Instated samtools:s390x 164s Re-Instated fastaq:s390x 164s Broken circlator:s390x Depends on python3-openpyxl:s390x < none | 3.1.2+dfsg-6 @un uH > 164s Considering python3-openpyxl:s390x 1 as a solution to circlator:s390x 9999 164s Re-Instated python3-et-xmlfile:s390x 164s Re-Instated libxslt1.1:s390x 164s Re-Instated python3-lxml:s390x 164s Re-Instated python3-openpyxl:s390x 164s Broken circlator:s390x Depends on python3-pymummer:s390x < none | 0.11.0-4 @un uH > 164s Considering python3-pymummer:s390x 1 as a solution to circlator:s390x 9999 164s Re-Instated mummer:s390x 164s Re-Instated python3-pymummer:s390x 164s Broken circlator:s390x Depends on python3-pysam:s390x < none @un H > 164s Broken circlator:s390x Depends on prodigal:s390x < none | 1:2.6.3-6 @un uH > 164s Considering prodigal:s390x 1 as a solution to circlator:s390x 9999 164s Re-Instated prodigal:s390x 164s Broken circlator:s390x Depends on bwa:s390x < none | 0.7.17-7 @un uH > 164s Considering bwa:s390x 1 as a solution to circlator:s390x 9999 164s Re-Instated bwa:s390x 164s Broken circlator:s390x Depends on canu:s390x < none | 2.2+dfsg-5 @un uH > 164s Considering canu:s390x 1 as a solution to circlator:s390x 9999 164s Re-Instated libgomp1:s390x 164s Re-Instated libsnappy1v5:s390x 164s Re-Instated libfilesys-df-perl:s390x 164s Re-Instated ca-certificates-java:s390x 164s Re-Instated java-common:s390x 164s Re-Instated libavahi-common-data:s390x 164s Re-Instated libavahi-common3:s390x 164s Re-Instated libavahi-client3:s390x 164s Re-Instated libcups2:s390x 164s Re-Instated liblcms2-2:s390x 164s Re-Instated libjpeg-turbo8:s390x 164s Re-Instated libjpeg8:s390x 164s Re-Instated libfreetype6:s390x 164s Re-Instated fonts-dejavu-mono:s390x 164s Re-Instated fonts-dejavu-core:s390x 164s Re-Instated fontconfig-config:s390x 164s Re-Instated libfontconfig1:s390x 164s Re-Instated libasound2-data:s390x 164s Re-Instated libasound2:s390x 164s Re-Instated libgraphite2-3:s390x 164s Re-Instated libharfbuzz0b:s390x 164s Re-Instated libpcsclite1:s390x 164s Re-Instated openjdk-21-jre-headless:s390x 164s Re-Instated default-jre-headless:s390x 164s Re-Instated binfmt-support:s390x 164s Re-Instated fastjar:s390x 164s Re-Instated jarwrapper:s390x 164s Re-Instated libapache-pom-java:s390x 164s Re-Instated libcommons-parent-java:s390x 164s Re-Instated libcommons-compress-java:s390x 164s Re-Instated libfastutil-java:s390x 164s Re-Instated libatinject-jsr330-api-java:s390x 164s Re-Instated liberror-prone-java:s390x 164s Re-Instated libjsr305-java:s390x 164s Re-Instated libguava-java:s390x 164s Re-Instated jaligner:s390x 164s Re-Instated libssw-java:s390x 164s Re-Instated mhap:s390x 164s Re-Instated aglfn:s390x 164s Re-Instated gnuplot-data:s390x 164s Re-Instated libpixman-1-0:s390x 164s Re-Instated libxcb-render0:s390x 164s Re-Instated libxcb-shm0:s390x 164s Re-Instated libxrender1:s390x 164s Re-Instated libcairo2:s390x 164s Re-Instated libjbig0:s390x 164s Re-Instated libsharpyuv0:s390x 164s Re-Instated libwebp7:s390x 164s Re-Instated libtiff6:s390x 164s Re-Instated libxpm4:s390x 164s Re-Instated libgd3:s390x 164s Re-Instated liblua5.4-0:s390x 164s Re-Instated fontconfig:s390x 164s Re-Instated libthai-data:s390x 164s Re-Instated libdatrie1:s390x 164s Re-Instated libthai0:s390x 164s Re-Instated libpango-1.0-0:s390x 164s Re-Instated libpangoft2-1.0-0:s390x 164s Re-Instated libpangocairo-1.0-0:s390x 164s Re-Instated gnuplot-nox:s390x 164s Re-Instated canu:s390x 164s Done 164s Some packages could not be installed. This may mean that you have 164s requested an impossible situation or if you are using the unstable 164s distribution that some required packages have not yet been created 164s or been moved out of Incoming. 164s The following information may help to resolve the situation: 164s 164s The following packages have unmet dependencies: 164s circlator : Depends: python3-pysam but it is not installable 164s E: Unable to correct problems, you have held broken packages. 164s autopkgtest [09:29:30]: @@@@@@@@@@@@@@@@@@@@ summary 164s run-unit-test FAIL badpkg 164s blame: circlator 164s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 164s run-unit-test FAIL badpkg 164s blame: circlator 164s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 176s Creating nova instance adt-noble-s390x-circlator-20240323-092646-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240322.img (UUID c8671f9a-0e89-48e3-af4f-3c79b89294e8)...