0s autopkgtest [09:24:16]: starting date and time: 2024-03-23 09:24:16+0000 0s autopkgtest [09:24:16]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [09:24:16]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jit1qcji/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade bamkit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-8.secgroup --name adt-noble-s390x-bamkit-20240323-092415-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 116s autopkgtest [09:26:12]: testbed dpkg architecture: s390x 116s autopkgtest [09:26:12]: testbed apt version: 2.7.12 116s autopkgtest [09:26:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 117s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 118s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 118s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 118s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 118s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3972 kB] 118s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [651 kB] 118s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 118s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 118s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 118s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [4148 kB] 118s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 118s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [46.8 kB] 118s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 121s Fetched 9504 kB in 2s (3892 kB/s) 121s Reading package lists... 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 124s Calculating upgrade... 124s The following packages will be REMOVED: 124s libssl3 124s The following NEW packages will be installed: 124s libssl3t64 124s The following packages have been kept back: 124s curl 124s The following packages will be upgraded: 124s libbsd0 libc-bin libc6 locales openssl 124s 5 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 124s Need to get 10.5 MB of archives. 124s After this operation, 241 kB of additional disk space will be used. 124s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libc6 s390x 2.39-0ubuntu6 [2847 kB] 125s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc-bin s390x 2.39-0ubuntu6 [654 kB] 125s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu2 [1010 kB] 125s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu2 [1675 kB] 125s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1 [46.7 kB] 125s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x locales all 2.39-0ubuntu6 [4232 kB] 125s Preconfiguring packages ... 125s Fetched 10.5 MB in 1s (11.8 MB/s) 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 125s Preparing to unpack .../libc6_2.39-0ubuntu6_s390x.deb ... 125s Unpacking libc6:s390x (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 126s Setting up libc6:s390x (2.39-0ubuntu6) ... 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 126s Preparing to unpack .../libc-bin_2.39-0ubuntu6_s390x.deb ... 126s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 126s Setting up libc-bin (2.39-0ubuntu6) ... 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 126s Preparing to unpack .../openssl_3.0.13-0ubuntu2_s390x.deb ... 126s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 126s dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested: 126s wget depends on libssl3 (>= 3.0.0). 126s tnftp depends on libssl3 (>= 3.0.0). 126s tcpdump depends on libssl3 (>= 3.0.0). 126s systemd-resolved depends on libssl3 (>= 3.0.0). 126s systemd depends on libssl3 (>= 3.0.0). 126s sudo depends on libssl3 (>= 3.0.0). 126s s390-tools depends on libssl3 (>= 3.0.0). 126s rsync depends on libssl3 (>= 3.0.0). 126s python3-cryptography depends on libssl3 (>= 3.0.0). 126s openssh-server depends on libssl3 (>= 3.0.10). 126s openssh-client depends on libssl3 (>= 3.0.10). 126s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 126s libsystemd-shared:s390x depends on libssl3 (>= 3.0.0). 126s libssh-4:s390x depends on libssl3 (>= 3.0.0). 126s libsasl2-modules:s390x depends on libssl3 (>= 3.0.0). 126s libsasl2-2:s390x depends on libssl3 (>= 3.0.0). 126s libpython3.12-minimal:s390x depends on libssl3 (>= 3.0.0). 126s libpython3.11-minimal:s390x depends on libssl3 (>= 3.0.0). 126s libnvme1 depends on libssl3 (>= 3.0.0). 126s libkrb5-3:s390x depends on libssl3 (>= 3.0.0). 126s libkmod2:s390x depends on libssl3 (>= 3.0.0). 126s libfido2-1:s390x depends on libssl3 (>= 3.0.0). 126s libcurl4:s390x depends on libssl3 (>= 3.0.0). 126s libcryptsetup12:s390x depends on libssl3 (>= 3.0.0). 126s kmod depends on libssl3 (>= 3.0.0). 126s dhcpcd-base depends on libssl3 (>= 3.0.0). 126s bind9-libs:s390x depends on libssl3 (>= 3.0.0). 126s 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52170 files and directories currently installed.) 126s Removing libssl3:s390x (3.0.10-1ubuntu4) ... 126s Selecting previously unselected package libssl3t64:s390x. 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52159 files and directories currently installed.) 126s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_s390x.deb ... 126s Unpacking libssl3t64:s390x (3.0.13-0ubuntu2) ... 126s Preparing to unpack .../libbsd0_0.12.1-1_s390x.deb ... 126s Unpacking libbsd0:s390x (0.12.1-1) over (0.11.8-1) ... 126s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 126s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 127s Setting up libssl3t64:s390x (3.0.13-0ubuntu2) ... 127s Setting up locales (2.39-0ubuntu6) ... 127s Generating locales (this might take a while)... 129s en_US.UTF-8... done 129s Generation complete. 129s Setting up openssl (3.0.13-0ubuntu2) ... 129s Setting up libbsd0:s390x (0.12.1-1) ... 129s Processing triggers for man-db (2.12.0-3) ... 130s Processing triggers for libc-bin (2.39-0ubuntu6) ... 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 131s Unknown architecture, assuming PC-style ttyS0 131s sh: Attempting to set up Debian/Ubuntu apt sources automatically 131s sh: Distribution appears to be Ubuntu 131s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s eatmydata is already the newest version (131-1). 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s dbus is already the newest version (1.14.10-4ubuntu1). 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s rng-tools-debian is already the newest version (2.4). 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s The following packages will be REMOVED: 133s cloud-init* python3-configobj* python3-debconf* 133s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 133s After this operation, 3256 kB disk space will be freed. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52172 files and directories currently installed.) 133s Removing cloud-init (24.1.2-0ubuntu1) ... 134s Removing python3-configobj (5.0.8-3) ... 134s Removing python3-debconf (1.5.86) ... 134s Processing triggers for man-db (2.12.0-3) ... 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51783 files and directories currently installed.) 134s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 135s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 135s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 135s invoke-rc.d: policy-rc.d denied execution of try-restart. 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s linux-generic is already the newest version (6.8.0-11.11+1). 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 136s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 136s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 137s Reading package lists... 137s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Calculating upgrade... 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [09:26:35]: rebooting testbed after setup commands that affected boot 156s autopkgtest [09:26:52]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 159s autopkgtest [09:26:55]: @@@@@@@@@@@@@@@@@@@@ apt-source bamkit 160s Get:1 http://ftpmaster.internal/ubuntu noble/universe bamkit 0.0.1+git20170413.ccd079d-3 (dsc) [2124 B] 160s Get:2 http://ftpmaster.internal/ubuntu noble/universe bamkit 0.0.1+git20170413.ccd079d-3 (tar) [7772 B] 160s Get:3 http://ftpmaster.internal/ubuntu noble/universe bamkit 0.0.1+git20170413.ccd079d-3 (diff) [6420 B] 160s gpgv: Signature made Mon Aug 16 11:31:23 2021 UTC 160s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 160s gpgv: issuer "npatra974@gmail.com" 160s gpgv: Can't check signature: No public key 160s dpkg-source: warning: cannot verify inline signature for ./bamkit_0.0.1+git20170413.ccd079d-3.dsc: no acceptable signature found 161s autopkgtest [09:26:57]: testing package bamkit version 0.0.1+git20170413.ccd079d-3 161s autopkgtest [09:26:57]: build not needed 161s autopkgtest [09:26:57]: test run-unit-test: preparing testbed 168s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s Starting pkgProblemResolver with broken count: 1 169s Starting 2 pkgProblemResolver with broken count: 1 169s Investigating (0) bamkit:s390x < none -> 0.0.1+git20170413.ccd079d-3 @un puN Ib > 169s Broken bamkit:s390x Depends on python3-pysam:s390x < none @un H > 169s Done 169s Some packages could not be installed. This may mean that you have 169s requested an impossible situation or if you are using the unstable 169s distribution that some required packages have not yet been created 169s or been moved out of Incoming. 169s The following information may help to resolve the situation: 169s 169s The following packages have unmet dependencies: 169s bamkit : Depends: python3-pysam but it is not installable 169s E: Unable to correct problems, you have held broken packages. 169s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 170s Starting pkgProblemResolver with broken count: 1 170s Starting 2 pkgProblemResolver with broken count: 1 170s Investigating (0) bamkit:s390x < none -> 0.0.1+git20170413.ccd079d-3 @un puN Ib > 170s Broken bamkit:s390x Depends on python3-pysam:s390x < none @un H > 170s Done 170s Some packages could not be installed. This may mean that you have 170s requested an impossible situation or if you are using the unstable 170s distribution that some required packages have not yet been created 170s or been moved out of Incoming. 170s The following information may help to resolve the situation: 170s 170s The following packages have unmet dependencies: 170s bamkit : Depends: python3-pysam but it is not installable 170s E: Unable to correct problems, you have held broken packages. 170s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 170s Starting pkgProblemResolver with broken count: 1 171s Starting 2 pkgProblemResolver with broken count: 1 171s Investigating (0) bamkit:s390x < none -> 0.0.1+git20170413.ccd079d-3 @un puN Ib > 171s Broken bamkit:s390x Depends on python3-pysam:s390x < none @un H > 171s Done 171s Some packages could not be installed. This may mean that you have 171s requested an impossible situation or if you are using the unstable 171s distribution that some required packages have not yet been created 171s or been moved out of Incoming. 171s The following information may help to resolve the situation: 171s 171s The following packages have unmet dependencies: 171s bamkit : Depends: python3-pysam but it is not installable 171s E: Unable to correct problems, you have held broken packages. 171s run-unit-test FAIL badpkg 171s blame: bamkit 171s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 171s autopkgtest [09:27:07]: @@@@@@@@@@@@@@@@@@@@ summary 171s run-unit-test FAIL badpkg 171s blame: bamkit 171s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 182s Creating nova instance adt-noble-s390x-bamkit-20240323-092415-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240322.img (UUID c8671f9a-0e89-48e3-af4f-3c79b89294e8)...