0s autopkgtest [06:58:09]: starting date: 2024-03-13 0s autopkgtest [06:58:09]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline 0s autopkgtest [06:58:09]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._e_zt3le/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:perl,src:db5.3,src:gdbm,src:mmdebstrap --apt-upgrade assemblytics --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=perl/5.38.2-3.2 db5.3/5.3.28+dfsg2-5 gdbm/1.23-5.1 mmdebstrap/1.4.3-6' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-14.secgroup --name adt-noble-s390x-assemblytics-20240313-065808-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 422s autopkgtest [07:05:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 422s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 423s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 423s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [40.4 kB] 423s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2745 kB] 424s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [447 kB] 425s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [585 kB] 425s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B] 425s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1372 B] 425s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B] 425s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3019 kB] 427s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B] 427s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [25.3 kB] 427s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B] 429s Fetched 6996 kB in 6s (1257 kB/s) 429s Reading package lists... 436s Reading package lists... 436s Building dependency tree... 436s Reading state information... 436s Calculating upgrade... 436s The following packages were automatically installed and are no longer required: 436s fuse3 libfuse3-3 libgdbm-compat4t64 libperl5.38 lto-disabled-list make 436s perl-modules-5.38 s390-tools-data s390-tools-signed 436s Use 'sudo apt autoremove' to remove them. 436s The following packages will be REMOVED: 436s dpkg-dev libdpkg-perl libgdbm-compat4 libgdbm6 perl s390-tools 436s sysconfig-hardware 436s The following NEW packages will be installed: 436s libgdbm-compat4t64 libgdbm6t64 436s The following packages have been kept back: 437s libperl5.38 437s The following packages will be upgraded: 437s cloud-init gdisk perl-base perl-modules-5.38 437s 4 upgraded, 2 newly installed, 7 to remove and 1 not upgraded. 437s Need to get 5973 kB of archives. 437s After this operation, 15.6 MB disk space will be freed. 437s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x perl-base s390x 5.38.2-3.2 [1961 kB] 438s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgdbm6t64 s390x 1.23-5.1 [36.4 kB] 438s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgdbm-compat4t64 s390x 1.23-5.1 [6880 B] 438s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 438s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x cloud-init all 24.1.1-0ubuntu1 [597 kB] 439s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x gdisk s390x 1.0.10-1 [262 kB] 439s Preconfiguring packages ... 439s Fetched 5973 kB in 2s (2794 kB/s) 439s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52188 files and directories currently installed.) 439s Removing dpkg-dev (1.22.4ubuntu5) ... 439s Removing libdpkg-perl (1.22.4ubuntu5) ... 439s Removing sysconfig-hardware (0.0.14ubuntu2) ... 439s Removing s390-tools (2.31.0-0ubuntu1) ... 440s Removing perl (5.38.2-3) ... 440s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51349 files and directories currently installed.) 440s Preparing to unpack .../perl-base_5.38.2-3.2_s390x.deb ... 440s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 440s Setting up perl-base (5.38.2-3.2) ... 440s dpkg: libgdbm6:s390x: dependency problems, but removing anyway as you requested: 440s python3-gdbm:s390x depends on libgdbm6 (>= 1.16). 440s man-db depends on libgdbm6 (>= 1.16). 440s libperl5.38:s390x depends on libgdbm6 (>= 1.21). 440s libgdbm-compat4:s390x depends on libgdbm6 (>= 1.16). 440s 440s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51349 files and directories currently installed.) 440s Removing libgdbm6:s390x (1.23-5) ... 440s Selecting previously unselected package libgdbm6t64:s390x. 440s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51344 files and directories currently installed.) 440s Preparing to unpack .../libgdbm6t64_1.23-5.1_s390x.deb ... 440s Unpacking libgdbm6t64:s390x (1.23-5.1) ... 440s dpkg: libgdbm-compat4:s390x: dependency problems, but removing anyway as you requested: 440s libperl5.38:s390x depends on libgdbm-compat4 (>= 1.18-3). 440s 440s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51350 files and directories currently installed.) 440s Removing libgdbm-compat4:s390x (1.23-5) ... 440s Selecting previously unselected package libgdbm-compat4t64:s390x. 440s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51345 files and directories currently installed.) 440s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_s390x.deb ... 440s Unpacking libgdbm-compat4t64:s390x (1.23-5.1) ... 440s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... 440s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 441s Preparing to unpack .../cloud-init_24.1.1-0ubuntu1_all.deb ... 441s Unpacking cloud-init (24.1.1-0ubuntu1) over (24.1-0ubuntu1) ... 441s Preparing to unpack .../gdisk_1.0.10-1_s390x.deb ... 441s Unpacking gdisk (1.0.10-1) over (1.0.9-2.1) ... 441s Setting up cloud-init (24.1.1-0ubuntu1) ... 443s Setting up libgdbm6t64:s390x (1.23-5.1) ... 443s Setting up libgdbm-compat4t64:s390x (1.23-5.1) ... 443s Setting up gdisk (1.0.10-1) ... 443s Setting up perl-modules-5.38 (5.38.2-3.2) ... 443s Processing triggers for libc-bin (2.39-0ubuntu2) ... 443s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 443s Processing triggers for man-db (2.12.0-3) ... 444s Processing triggers for initramfs-tools (0.142ubuntu20) ... 444s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 444s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 448s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Reading package lists...Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 448s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 448s 448s Building dependency tree... 448s Reading state information... 449s The following packages will be REMOVED: 449s fuse3* libfuse3-3* libgdbm-compat4t64* libperl5.38* lto-disabled-list* make* 449s perl-modules-5.38* s390-tools-data* s390-tools-signed* 449s 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. 449s After this operation, 50.6 MB disk space will be freed. 449s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51351 files and directories currently installed.) 449s Removing fuse3 (3.14.0-5) ... 449s update-initramfs: deferring update (trigger activated) 449s Removing libfuse3-3:s390x (3.14.0-5) ... 449s Removing libperl5.38:s390x (5.38.2-3) ... 449s Removing libgdbm-compat4t64:s390x (1.23-5.1) ... 449s Removing lto-disabled-list (47) ... 449s Removing make (4.3-4.1build1) ... 449s Removing perl-modules-5.38 (5.38.2-3.2) ... 449s Removing s390-tools-data (2.31.0-0ubuntu1) ... 449s Removing s390-tools-signed (2.31.0-0ubuntu1) ... 449s Processing triggers for libc-bin (2.39-0ubuntu2) ... 449s Processing triggers for man-db (2.12.0-3) ... 450s Processing triggers for initramfs-tools (0.142ubuntu20) ... 450s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 450s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 453s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49354 files and directories currently installed.) 453s Purging configuration files for fuse3 (3.14.0-5) ... 454s Unknown architecture, assuming PC-style ttyS0 454s sh: Attempting to set up Debian/Ubuntu apt sources automatically 454s sh: Distribution appears to be Ubuntu 458s Reading package lists... 458s Building dependency tree... 458s Reading state information... 458s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1eatmydata is already the newest version (131-1). 458s dbus is already the newest version (1.14.10-4ubuntu1). 458s dbus set to manually installed. 458s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 458s 458s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 458s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 458s Reading package lists... 459s Building dependency tree... 459s Reading state information... 459s rng-tools-debian is already the newest version (2.4). 459s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 459s Reading package lists... 460s Building dependency tree... 460s Reading state information... 460s haveged is already the newest version (1.9.14-1ubuntu1). 460s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 460s Reading package lists... 460s Building dependency tree... 460s Reading state information... 461s The following additional packages will be installed: 461s libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64 lto-disabled-list 461s make perl perl-modules-5.38 461s Suggested packages: 461s debian-keyring gcc | c-compiler git bzr make-doc perl-doc 461s libterm-readline-gnu-perl | libterm-readline-perl-perl 461s libtap-harness-archive-perl 461s Recommended packages: 461s build-essential gcc | c-compiler fakeroot libalgorithm-merge-perl 461s libfile-fcntllock-perl 461s The following packages will be REMOVED: 461s libdb5.3 461s The following NEW packages will be installed: 461s dpkg-dev libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64 461s lto-disabled-list make perl perl-modules-5.38 461s 0 upgraded, 9 newly installed, 1 to remove and 0 not upgraded. 461s Need to get 7542 kB/10.7 MB of archives. 461s After this operation, 54.4 MB of additional disk space will be used. 461s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdb5.3t64 s390x 5.3.28+dfsg2-5build1 [763 kB] 462s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libperl5.38t64 s390x 5.38.2-3.2 [5007 kB] 464s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x perl s390x 5.38.2-3.2 [231 kB] 464s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libdpkg-perl all 1.22.4ubuntu5 [268 kB] 464s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x make s390x 4.3-4.1build1 [182 kB] 464s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x lto-disabled-list all 47 [12.4 kB] 464s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x dpkg-dev all 1.22.4ubuntu5 [1078 kB] 465s Fetched 7542 kB in 3s (2245 kB/s) 465s dpkg: libdb5.3:s390x: dependency problems, but removing anyway as you requested: 465s libsasl2-modules-db:s390x depends on libdb5.3. 465s libpython3.12-stdlib:s390x depends on libdb5.3. 465s libpython3.11-stdlib:s390x depends on libdb5.3. 465s libpam-modules:s390x depends on libdb5.3. 465s iproute2 depends on libdb5.3. 465s apt-utils depends on libdb5.3. 465s 465s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49353 files and directories currently installed.) 465s Removing libdb5.3:s390x (5.3.28+dfsg2-4) ... 465s Selecting previously unselected package libdb5.3t64:s390x. 465s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49347 files and directories currently installed.) 465s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-5build1_s390x.deb ... 465s Unpacking libdb5.3t64:s390x (5.3.28+dfsg2-5build1) ... 465s Setting up libdb5.3t64:s390x (5.3.28+dfsg2-5build1) ... 465s Selecting previously unselected package perl-modules-5.38. 465s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49353 files and directories currently installed.) 465s Preparing to unpack .../0-perl-modules-5.38_5.38.2-3.2_all.deb ... 465s Unpacking perl-modules-5.38 (5.38.2-3.2) ... 465s Selecting previously unselected package libgdbm-compat4t64:s390x. 465s Preparing to unpack .../1-libgdbm-compat4t64_1.23-5.1_s390x.deb ... 465s Unpacking libgdbm-compat4t64:s390x (1.23-5.1) ... 465s Selecting previously unselected package libperl5.38t64:s390x. 465s Preparing to unpack .../2-libperl5.38t64_5.38.2-3.2_s390x.deb ... 465s Unpacking libperl5.38t64:s390x (5.38.2-3.2) ... 466s Selecting previously unselected package perl. 466s Preparing to unpack .../3-perl_5.38.2-3.2_s390x.deb ... 466s Unpacking perl (5.38.2-3.2) ... 466s Selecting previously unselected package libdpkg-perl. 466s Preparing to unpack .../4-libdpkg-perl_1.22.4ubuntu5_all.deb ... 466s Unpacking libdpkg-perl (1.22.4ubuntu5) ... 466s Selecting previously unselected package make. 466s Preparing to unpack .../5-make_4.3-4.1build1_s390x.deb ... 466s Unpacking make (4.3-4.1build1) ... 466s Selecting previously unselected package lto-disabled-list. 466s Preparing to unpack .../6-lto-disabled-list_47_all.deb ... 466s Unpacking lto-disabled-list (47) ... 466s Selecting previously unselected package dpkg-dev. 466s Preparing to unpack .../7-dpkg-dev_1.22.4ubuntu5_all.deb ... 466s Unpacking dpkg-dev (1.22.4ubuntu5) ... 466s Setting up lto-disabled-list (47) ... 466s Setting up libgdbm-compat4t64:s390x (1.23-5.1) ... 466s Setting up make (4.3-4.1build1) ... 466s Setting up perl-modules-5.38 (5.38.2-3.2) ... 466s Setting up libperl5.38t64:s390x (5.38.2-3.2) ... 466s Setting up perl (5.38.2-3.2) ... 466s Setting up libdpkg-perl (1.22.4ubuntu5) ... 466s Setting up dpkg-dev (1.22.4ubuntu5) ... 466s Processing triggers for man-db (2.12.0-3) ... 467s Processing triggers for libc-bin (2.39-0ubuntu2) ... 467s Reading package lists... 467s Building dependency tree... 467s Reading state information... 468s The following packages will be REMOVED: 468s cloud-init* python3-configobj* python3-debconf* 468s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 468s After this operation, 3252 kB disk space will be freed. 468s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51898 files and directories currently installed.) 468s Removing cloud-init (24.1.1-0ubuntu1) ... 469s Removing python3-configobj (5.0.8-3) ... 469s Removing python3-debconf (1.5.86) ... 469s Processing triggers for man-db (2.12.0-3) ... 469s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51509 files and directories currently installed.) 469s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 470s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 470s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 471s Reading package lists... 471s Building dependency tree... 471s Reading state information... 471s linux-generic is already the newest version (6.8.0-11.11+1). 471s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 472s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 472s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 472s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 472s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 472s Hit:5 http://ftpmaster.internal/ubuntu noble-backports InRelease 476s Reading package lists... 476s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 476s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 476s Reading package lists... 477s Building dependency tree... 477s Reading state information... 477s Calculating upgrade... 477s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 477s Reading package lists... 478s Building dependency tree... 478s Reading state information... 478s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 478s autopkgtest [07:06:07]: rebooting testbed after setup commands that affected boot 499s autopkgtest [07:06:28]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Tue Feb 13 23:45:46 UTC 2024 499s autopkgtest [07:06:28]: testbed dpkg architecture: s390x 501s autopkgtest [07:06:30]: @@@@@@@@@@@@@@@@@@@@ apt-source assemblytics 502s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 502s W: Target Packages (main/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target CNF (main/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target Packages (universe/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target CNF (universe/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target Packages (restricted/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target CNF (restricted/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target Packages (multiverse/binary-s390x/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target CNF (multiverse/cnf/Commands-s390x) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 502s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 503s Get:1 http://ftpmaster.internal/ubuntu noble/universe assemblytics 1.2.1+dfsg-2 (dsc) [2072 B] 503s Get:2 http://ftpmaster.internal/ubuntu noble/universe assemblytics 1.2.1+dfsg-2 (tar) [15.5 kB] 503s Get:3 http://ftpmaster.internal/ubuntu noble/universe assemblytics 1.2.1+dfsg-2 (diff) [4640 B] 503s gpgv: Signature made Wed Dec 6 13:41:32 2023 UTC 503s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 503s gpgv: issuer "tillea@rki.de" 503s gpgv: Can't check signature: No public key 503s dpkg-source: warning: cannot verify inline signature for ./assemblytics_1.2.1+dfsg-2.dsc: no acceptable signature found 503s autopkgtest [07:06:32]: testing package assemblytics version 1.2.1+dfsg-2 503s autopkgtest [07:06:32]: build not needed 505s autopkgtest [07:06:34]: test run-unit-test: preparing testbed 508s Reading package lists... 508s Building dependency tree... 508s Reading state information... 508s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 508s Starting 2 pkgProblemResolver with broken count: 0 508s Done 508s Done 509s Starting pkgProblemResolver with broken count: 0 509s Starting 2 pkgProblemResolver with broken count: 0 509s Done 509s The following additional packages will be installed: 509s assemblytics fontconfig fontconfig-config fonts-dejavu-core 509s fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 509s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 509s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 libpango-1.0-0 509s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 509s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 509s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 509s littler python-is-python3 python3-all python3-numpy r-base-core r-cran-cli 509s r-cran-colorspace r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue 509s r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle 509s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv 509s r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 509s r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang 509s r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite 509s r-cran-withr unzip x11-common xdg-utils zip 509s Suggested packages: 509s tcl8.6 tk8.6 gcc gfortran python3-dev python3-pytest elpa-ess r-doc-info 509s | r-doc-pdf r-mathlib r-base-html r-cran-kernsmooth r-cran-kernlab 509s r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr 509s r-cran-png r-cran-jpeg r-cran-knitr r-cran-rmarkdown r-cran-viridis 509s r-cran-covr r-cran-magick r-cran-sf r-cran-getopt r-cran-bit64 r-cran-dbi 509s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-stringi 509s r-cran-survival r-cran-units r-cran-vdiffr r-cran-testthat r-cran-inline 509s r-cran-bench r-cran-blob r-cran-brio r-cran-callr r-cran-crayon 509s r-cran-evaluate r-cran-here r-cran-hms r-cran-htmltools r-cran-pkgbuild 509s r-cran-pkgload r-cran-purrr r-cran-tidyr 509s Recommended packages: 509s mummer r-recommended r-base-dev r-doc-html r-cran-callr r-cran-covr 509s r-cran-crayon r-cran-digest r-cran-htmltools r-cran-htmlwidgets r-cran-knitr 509s r-cran-mockery r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot 509s r-cran-rstudioapi r-cran-testthat r-cran-whoami r-cran-unitizer r-cran-dplyr 509s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 509s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 509s r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-dbi r-cran-rsqlite 509s r-cran-waldo r-cran-lintr r-cran-tidyverse r-cran-lubridate r-cran-abind 509s r-cran-doparallel r-cran-foreach r-cran-iterators r-cran-itertools r-cran-fs 509s r-cran-usethis r-cran-bit64 r-cran-dichromat r-cran-hms r-cran-stringi 509s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-generics 509s r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl 509s libx11-protocol-perl x11-utils x11-xserver-utils 509s The following NEW packages will be installed: 509s assemblytics fontconfig fontconfig-config fonts-dejavu-core 509s fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 509s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 509s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 libpango-1.0-0 509s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 509s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 509s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 509s littler python-is-python3 python3-all python3-numpy r-base-core r-cran-cli 509s r-cran-colorspace r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue 509s r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle 509s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv 509s r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 509s r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang 509s r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite 509s r-cran-withr unzip x11-common xdg-utils zip 510s 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. 510s 1 not fully installed or removed. 510s Need to get 75.3 MB of archives. 510s After this operation, 165 MB of additional disk space will be used. 510s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB] 510s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240303-1ubuntu1 [598 kB] 510s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB] 511s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x python3-numpy s390x 1:1.24.2-2 [5137 kB] 513s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB] 513s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB] 513s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] 513s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] 513s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 514s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] 514s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 514s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 515s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] 515s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] 515s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] 515s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] 515s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] 515s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] 515s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-1 [578 kB] 515s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240303-1ubuntu1 [151 kB] 515s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] 515s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 515s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1ubuntu1 [191 kB] 516s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] 516s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2 [515 kB] 516s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB] 516s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB] 516s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB] 516s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.51.0+ds-4 [240 kB] 516s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.51.0+ds-4 [43.6 kB] 516s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.51.0+ds-4 [28.9 kB] 516s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.13+dfsg-2 [948 kB] 517s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] 517s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] 517s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libsharpyuv0 s390x 1.3.2-0.4 [14.8 kB] 517s Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libwebp7 s390x 1.3.2-0.4 [207 kB] 517s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libtiff6 s390x 4.5.1+git230720-3ubuntu1 [253 kB] 517s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB] 517s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] 517s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B] 517s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.13-2 [757 kB] 518s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] 518s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] 518s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libxt6 s390x 1:1.2.1-1.1 [166 kB] 518s Get:45 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.2-1build1 [27.1 MB] 556s Get:46 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB] 558s Get:47 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB] 558s Get:48 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB] 560s Get:49 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 561s Get:50 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 561s Get:51 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB] 563s Get:52 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mass s390x 7.3-60.0.1-1 [1122 kB] 564s Get:53 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB] 565s Get:54 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-nlme s390x 3.1.164-1 [2268 kB] 567s Get:55 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB] 569s Get:56 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 571s Get:57 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-farver s390x 2.1.1-1 [1347 kB] 572s Get:58 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB] 572s Get:59 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-colorspace s390x 2.1-0+dfsg-1 [1540 kB] 573s Get:60 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-munsell all 0.5.0-2build1 [208 kB] 573s Get:61 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 573s Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 573s Get:63 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB] 573s Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-scales all 1.3.0-1 [603 kB] 574s Get:65 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 574s Get:66 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 574s Get:67 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 574s Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 575s Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 575s Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 575s Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB] 576s Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-withr all 2.5.0-1 [225 kB] 576s Get:73 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 578s Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-littler s390x 0.3.19-1 [93.0 kB] 578s Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x littler all 0.3.19-1 [2472 B] 578s Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 578s Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB] 579s Get:78 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-plyr s390x 1.8.9-1 [835 kB] 579s Get:79 http://ftpmaster.internal/ubuntu noble/universe s390x assemblytics all 1.2.1+dfsg-2 [19.1 kB] 579s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x python3-all s390x 3.12.1-0ubuntu2 [908 B] 579s Get:81 http://ftpmaster.internal/ubuntu noble/main s390x python-is-python3 all 3.11.4-1 [2684 B] 580s Preconfiguring packages ... 580s Fetched 75.3 MB in 1min 10s (1077 kB/s) 580s Selecting previously unselected package libblas3:s390x. 580s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51454 files and directories currently installed.) 580s Preparing to unpack .../00-libblas3_3.12.0-3_s390x.deb ... 580s Unpacking libblas3:s390x (3.12.0-3) ... 580s Selecting previously unselected package libgfortran5:s390x. 580s Preparing to unpack .../01-libgfortran5_14-20240303-1ubuntu1_s390x.deb ... 580s Unpacking libgfortran5:s390x (14-20240303-1ubuntu1) ... 580s Selecting previously unselected package liblapack3:s390x. 580s Preparing to unpack .../02-liblapack3_3.12.0-3_s390x.deb ... 580s Unpacking liblapack3:s390x (3.12.0-3) ... 580s Selecting previously unselected package python3-numpy. 580s Preparing to unpack .../03-python3-numpy_1%3a1.24.2-2_s390x.deb ... 580s Unpacking python3-numpy (1:1.24.2-2) ... 581s Selecting previously unselected package zip. 581s Preparing to unpack .../04-zip_3.0-13_s390x.deb ... 581s Unpacking zip (3.0-13) ... 581s Selecting previously unselected package unzip. 581s Preparing to unpack .../05-unzip_6.0-28ubuntu3_s390x.deb ... 581s Unpacking unzip (6.0-28ubuntu3) ... 581s Selecting previously unselected package libpaper1:s390x. 581s Preparing to unpack .../06-libpaper1_1.1.29_s390x.deb ... 581s Unpacking libpaper1:s390x (1.1.29) ... 581s Selecting previously unselected package libpaper-utils. 581s Preparing to unpack .../07-libpaper-utils_1.1.29_s390x.deb ... 581s Unpacking libpaper-utils (1.1.29) ... 581s Selecting previously unselected package xdg-utils. 581s Preparing to unpack .../08-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 581s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 581s Selecting previously unselected package libfreetype6:s390x. 581s Preparing to unpack .../09-libfreetype6_2.13.2+dfsg-1_s390x.deb ... 581s Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... 581s Selecting previously unselected package fonts-dejavu-mono. 581s Preparing to unpack .../10-fonts-dejavu-mono_2.37-8_all.deb ... 581s Unpacking fonts-dejavu-mono (2.37-8) ... 581s Selecting previously unselected package fonts-dejavu-core. 581s Preparing to unpack .../11-fonts-dejavu-core_2.37-8_all.deb ... 581s Unpacking fonts-dejavu-core (2.37-8) ... 581s Selecting previously unselected package fontconfig-config. 581s Preparing to unpack .../12-fontconfig-config_2.15.0-1ubuntu1_s390x.deb ... 581s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 581s Selecting previously unselected package libfontconfig1:s390x. 581s Preparing to unpack .../13-libfontconfig1_2.15.0-1ubuntu1_s390x.deb ... 581s Unpacking libfontconfig1:s390x (2.15.0-1ubuntu1) ... 581s Selecting previously unselected package libpixman-1-0:s390x. 581s Preparing to unpack .../14-libpixman-1-0_0.42.2-1_s390x.deb ... 581s Unpacking libpixman-1-0:s390x (0.42.2-1) ... 581s Selecting previously unselected package libxcb-render0:s390x. 581s Preparing to unpack .../15-libxcb-render0_1.15-1_s390x.deb ... 581s Unpacking libxcb-render0:s390x (1.15-1) ... 581s Selecting previously unselected package libxcb-shm0:s390x. 581s Preparing to unpack .../16-libxcb-shm0_1.15-1_s390x.deb ... 581s Unpacking libxcb-shm0:s390x (1.15-1) ... 581s Selecting previously unselected package libxrender1:s390x. 581s Preparing to unpack .../17-libxrender1_1%3a0.9.10-1.1_s390x.deb ... 581s Unpacking libxrender1:s390x (1:0.9.10-1.1) ... 581s Selecting previously unselected package libcairo2:s390x. 581s Preparing to unpack .../18-libcairo2_1.18.0-1_s390x.deb ... 581s Unpacking libcairo2:s390x (1.18.0-1) ... 581s Selecting previously unselected package libgomp1:s390x. 581s Preparing to unpack .../19-libgomp1_14-20240303-1ubuntu1_s390x.deb ... 581s Unpacking libgomp1:s390x (14-20240303-1ubuntu1) ... 581s Selecting previously unselected package libjpeg-turbo8:s390x. 581s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... 581s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 581s Selecting previously unselected package libjpeg8:s390x. 581s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_s390x.deb ... 581s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 581s Selecting previously unselected package fontconfig. 581s Preparing to unpack .../22-fontconfig_2.15.0-1ubuntu1_s390x.deb ... 581s Unpacking fontconfig (2.15.0-1ubuntu1) ... 581s Selecting previously unselected package libgraphite2-3:s390x. 581s Preparing to unpack .../23-libgraphite2-3_1.3.14-2_s390x.deb ... 581s Unpacking libgraphite2-3:s390x (1.3.14-2) ... 581s Selecting previously unselected package libharfbuzz0b:s390x. 581s Preparing to unpack .../24-libharfbuzz0b_8.3.0-2_s390x.deb ... 581s Unpacking libharfbuzz0b:s390x (8.3.0-2) ... 581s Selecting previously unselected package libthai-data. 581s Preparing to unpack .../25-libthai-data_0.1.29-2_all.deb ... 581s Unpacking libthai-data (0.1.29-2) ... 581s Selecting previously unselected package libdatrie1:s390x. 581s Preparing to unpack .../26-libdatrie1_0.2.13-3_s390x.deb ... 581s Unpacking libdatrie1:s390x (0.2.13-3) ... 581s Selecting previously unselected package libthai0:s390x. 581s Preparing to unpack .../27-libthai0_0.1.29-2_s390x.deb ... 581s Unpacking libthai0:s390x (0.1.29-2) ... 581s Selecting previously unselected package libpango-1.0-0:s390x. 581s Preparing to unpack .../28-libpango-1.0-0_1.51.0+ds-4_s390x.deb ... 581s Unpacking libpango-1.0-0:s390x (1.51.0+ds-4) ... 581s Selecting previously unselected package libpangoft2-1.0-0:s390x. 581s Preparing to unpack .../29-libpangoft2-1.0-0_1.51.0+ds-4_s390x.deb ... 581s Unpacking libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 581s Selecting previously unselected package libpangocairo-1.0-0:s390x. 581s Preparing to unpack .../30-libpangocairo-1.0-0_1.51.0+ds-4_s390x.deb ... 581s Unpacking libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 581s Selecting previously unselected package libtcl8.6:s390x. 581s Preparing to unpack .../31-libtcl8.6_8.6.13+dfsg-2_s390x.deb ... 581s Unpacking libtcl8.6:s390x (8.6.13+dfsg-2) ... 581s Selecting previously unselected package libdeflate0:s390x. 581s Preparing to unpack .../32-libdeflate0_1.19-1_s390x.deb ... 581s Unpacking libdeflate0:s390x (1.19-1) ... 581s Selecting previously unselected package libjbig0:s390x. 581s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu1_s390x.deb ... 581s Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... 581s Selecting previously unselected package libsharpyuv0:s390x. 581s Preparing to unpack .../34-libsharpyuv0_1.3.2-0.4_s390x.deb ... 581s Unpacking libsharpyuv0:s390x (1.3.2-0.4) ... 581s Selecting previously unselected package libwebp7:s390x. 581s Preparing to unpack .../35-libwebp7_1.3.2-0.4_s390x.deb ... 581s Unpacking libwebp7:s390x (1.3.2-0.4) ... 581s Selecting previously unselected package libtiff6:s390x. 581s Preparing to unpack .../36-libtiff6_4.5.1+git230720-3ubuntu1_s390x.deb ... 581s Unpacking libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 581s Selecting previously unselected package libxft2:s390x. 581s Preparing to unpack .../37-libxft2_2.3.6-1_s390x.deb ... 581s Unpacking libxft2:s390x (2.3.6-1) ... 581s Selecting previously unselected package x11-common. 581s Preparing to unpack .../38-x11-common_1%3a7.7+23ubuntu2_all.deb ... 581s Unpacking x11-common (1:7.7+23ubuntu2) ... 581s Selecting previously unselected package libxss1:s390x. 581s Preparing to unpack .../39-libxss1_1%3a1.2.3-1build2_s390x.deb ... 581s Unpacking libxss1:s390x (1:1.2.3-1build2) ... 581s Selecting previously unselected package libtk8.6:s390x. 581s Preparing to unpack .../40-libtk8.6_8.6.13-2_s390x.deb ... 581s Unpacking libtk8.6:s390x (8.6.13-2) ... 582s Selecting previously unselected package libice6:s390x. 582s Preparing to unpack .../41-libice6_2%3a1.0.10-1build2_s390x.deb ... 582s Unpacking libice6:s390x (2:1.0.10-1build2) ... 582s Selecting previously unselected package libsm6:s390x. 582s Preparing to unpack .../42-libsm6_2%3a1.2.3-1build2_s390x.deb ... 582s Unpacking libsm6:s390x (2:1.2.3-1build2) ... 582s Selecting previously unselected package libxt6:s390x. 582s Preparing to unpack .../43-libxt6_1%3a1.2.1-1.1_s390x.deb ... 582s Unpacking libxt6:s390x (1:1.2.1-1.1) ... 582s Selecting previously unselected package r-base-core. 582s Preparing to unpack .../44-r-base-core_4.3.2-1build1_s390x.deb ... 582s Unpacking r-base-core (4.3.2-1build1) ... 582s Selecting previously unselected package r-cran-cli. 582s Preparing to unpack .../45-r-cran-cli_3.6.2-1_s390x.deb ... 582s Unpacking r-cran-cli (3.6.2-1) ... 582s Selecting previously unselected package r-cran-glue. 582s Preparing to unpack .../46-r-cran-glue_1.7.0-1_s390x.deb ... 582s Unpacking r-cran-glue (1.7.0-1) ... 582s Selecting previously unselected package r-cran-rlang. 582s Preparing to unpack .../47-r-cran-rlang_1.1.3-1_s390x.deb ... 582s Unpacking r-cran-rlang (1.1.3-1) ... 582s Selecting previously unselected package r-cran-lifecycle. 582s Preparing to unpack .../48-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 582s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 582s Selecting previously unselected package r-cran-gtable. 582s Preparing to unpack .../49-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 582s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 582s Selecting previously unselected package r-cran-isoband. 582s Preparing to unpack .../50-r-cran-isoband_0.2.7-1_s390x.deb ... 582s Unpacking r-cran-isoband (0.2.7-1) ... 582s Selecting previously unselected package r-cran-mass. 582s Preparing to unpack .../51-r-cran-mass_7.3-60.0.1-1_s390x.deb ... 582s Unpacking r-cran-mass (7.3-60.0.1-1) ... 582s Selecting previously unselected package r-cran-lattice. 582s Preparing to unpack .../52-r-cran-lattice_0.22-5-1_s390x.deb ... 582s Unpacking r-cran-lattice (0.22-5-1) ... 582s Selecting previously unselected package r-cran-nlme. 582s Preparing to unpack .../53-r-cran-nlme_3.1.164-1_s390x.deb ... 582s Unpacking r-cran-nlme (3.1.164-1) ... 582s Selecting previously unselected package r-cran-matrix. 582s Preparing to unpack .../54-r-cran-matrix_1.6-5-1_s390x.deb ... 582s Unpacking r-cran-matrix (1.6-5-1) ... 583s Selecting previously unselected package r-cran-mgcv. 583s Preparing to unpack .../55-r-cran-mgcv_1.9-1-1_s390x.deb ... 583s Unpacking r-cran-mgcv (1.9-1-1) ... 583s Selecting previously unselected package r-cran-farver. 583s Preparing to unpack .../56-r-cran-farver_2.1.1-1_s390x.deb ... 583s Unpacking r-cran-farver (2.1.1-1) ... 583s Selecting previously unselected package r-cran-labeling. 583s Preparing to unpack .../57-r-cran-labeling_0.4.3-1_all.deb ... 583s Unpacking r-cran-labeling (0.4.3-1) ... 583s Selecting previously unselected package r-cran-colorspace. 583s Preparing to unpack .../58-r-cran-colorspace_2.1-0+dfsg-1_s390x.deb ... 583s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 583s Selecting previously unselected package r-cran-munsell. 583s Preparing to unpack .../59-r-cran-munsell_0.5.0-2build1_all.deb ... 583s Unpacking r-cran-munsell (0.5.0-2build1) ... 583s Selecting previously unselected package r-cran-r6. 583s Preparing to unpack .../60-r-cran-r6_2.5.1-1_all.deb ... 583s Unpacking r-cran-r6 (2.5.1-1) ... 583s Selecting previously unselected package r-cran-rcolorbrewer. 583s Preparing to unpack .../61-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 583s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 583s Selecting previously unselected package r-cran-viridislite. 583s Preparing to unpack .../62-r-cran-viridislite_0.4.2-2_all.deb ... 583s Unpacking r-cran-viridislite (0.4.2-2) ... 583s Selecting previously unselected package r-cran-scales. 583s Preparing to unpack .../63-r-cran-scales_1.3.0-1_all.deb ... 583s Unpacking r-cran-scales (1.3.0-1) ... 583s Selecting previously unselected package r-cran-fansi. 583s Preparing to unpack .../64-r-cran-fansi_1.0.5-1_s390x.deb ... 583s Unpacking r-cran-fansi (1.0.5-1) ... 583s Selecting previously unselected package r-cran-magrittr. 583s Preparing to unpack .../65-r-cran-magrittr_2.0.3-1_s390x.deb ... 583s Unpacking r-cran-magrittr (2.0.3-1) ... 583s Selecting previously unselected package r-cran-utf8. 583s Preparing to unpack .../66-r-cran-utf8_1.2.4-1_s390x.deb ... 583s Unpacking r-cran-utf8 (1.2.4-1) ... 583s Selecting previously unselected package r-cran-vctrs. 583s Preparing to unpack .../67-r-cran-vctrs_0.6.5-1_s390x.deb ... 583s Unpacking r-cran-vctrs (0.6.5-1) ... 583s Selecting previously unselected package r-cran-pillar. 583s Preparing to unpack .../68-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 583s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 583s Selecting previously unselected package r-cran-pkgconfig. 583s Preparing to unpack .../69-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 583s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 583s Selecting previously unselected package r-cran-tibble. 583s Preparing to unpack .../70-r-cran-tibble_3.2.1+dfsg-2_s390x.deb ... 583s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 583s Selecting previously unselected package r-cran-withr. 583s Preparing to unpack .../71-r-cran-withr_2.5.0-1_all.deb ... 583s Unpacking r-cran-withr (2.5.0-1) ... 583s Selecting previously unselected package r-cran-ggplot2. 583s Preparing to unpack .../72-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 583s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 583s Selecting previously unselected package r-cran-littler. 583s Preparing to unpack .../73-r-cran-littler_0.3.19-1_s390x.deb ... 583s Unpacking r-cran-littler (0.3.19-1) ... 583s Selecting previously unselected package littler. 583s Preparing to unpack .../74-littler_0.3.19-1_all.deb ... 583s Unpacking littler (0.3.19-1) ... 583s Selecting previously unselected package r-cran-pkgkitten. 583s Preparing to unpack .../75-r-cran-pkgkitten_0.2.3-1_all.deb ... 583s Unpacking r-cran-pkgkitten (0.2.3-1) ... 583s Selecting previously unselected package r-cran-rcpp. 583s Preparing to unpack .../76-r-cran-rcpp_1.0.12-1_s390x.deb ... 583s Unpacking r-cran-rcpp (1.0.12-1) ... 583s Selecting previously unselected package r-cran-plyr. 583s Preparing to unpack .../77-r-cran-plyr_1.8.9-1_s390x.deb ... 583s Unpacking r-cran-plyr (1.8.9-1) ... 583s Selecting previously unselected package assemblytics. 583s Preparing to unpack .../78-assemblytics_1.2.1+dfsg-2_all.deb ... 583s Unpacking assemblytics (1.2.1+dfsg-2) ... 583s Selecting previously unselected package python3-all. 583s Preparing to unpack .../79-python3-all_3.12.1-0ubuntu2_s390x.deb ... 583s Unpacking python3-all (3.12.1-0ubuntu2) ... 584s Selecting previously unselected package python-is-python3. 584s Preparing to unpack .../80-python-is-python3_3.11.4-1_all.deb ... 584s Unpacking python-is-python3 (3.11.4-1) ... 584s Setting up libgraphite2-3:s390x (1.3.14-2) ... 584s Setting up libpixman-1-0:s390x (0.42.2-1) ... 584s Setting up libsharpyuv0:s390x (1.3.2-0.4) ... 584s Setting up libpaper1:s390x (1.1.29) ... 584s 584s Creating config file /etc/papersize with new version 584s Setting up libxrender1:s390x (1:0.9.10-1.1) ... 584s Setting up libdatrie1:s390x (0.2.13-3) ... 584s Setting up libxcb-render0:s390x (1.15-1) ... 584s Setting up unzip (6.0-28ubuntu3) ... 584s Setting up x11-common (1:7.7+23ubuntu2) ... 584s Setting up libdeflate0:s390x (1.19-1) ... 584s Setting up python3-all (3.12.1-0ubuntu2) ... 584s Setting up libxcb-shm0:s390x (1.15-1) ... 584s Setting up libpaper-utils (1.1.29) ... 584s Setting up libgomp1:s390x (14-20240303-1ubuntu1) ... 584s Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... 584s Setting up zip (3.0-13) ... 584s Setting up libblas3:s390x (3.12.0-3) ... 584s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 584s Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... 584s Setting up fonts-dejavu-mono (2.37-8) ... 584s Setting up libtcl8.6:s390x (8.6.13+dfsg-2) ... 584s Setting up fonts-dejavu-core (2.37-8) ... 584s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... 584s Setting up libgfortran5:s390x (14-20240303-1ubuntu1) ... 584s Setting up libwebp7:s390x (1.3.2-0.4) ... 584s Setting up libharfbuzz0b:s390x (8.3.0-2) ... 584s Setting up libthai-data (0.1.29-2) ... 584s Setting up libxss1:s390x (1:1.2.3-1build2) ... 584s Setting up python-is-python3 (3.11.4-1) ... 584s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 584s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 584s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 584s Setting up libice6:s390x (2:1.0.10-1build2) ... 584s Setting up liblapack3:s390x (3.12.0-3) ... 584s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 584s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 584s Setting up libthai0:s390x (0.1.29-2) ... 584s Setting up python3-numpy (1:1.24.2-2) ... 587s Setting up libtiff6:s390x (4.5.1+git230720-3ubuntu1) ... 587s Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... 587s Setting up libsm6:s390x (2:1.2.3-1build2) ... 587s Setting up fontconfig (2.15.0-1ubuntu1) ... 589s Regenerating fonts cache... done. 589s Setting up libxft2:s390x (2.3.6-1) ... 589s Setting up libtk8.6:s390x (8.6.13-2) ... 589s Setting up libpango-1.0-0:s390x (1.51.0+ds-4) ... 589s Setting up libcairo2:s390x (1.18.0-1) ... 589s Setting up libxt6:s390x (1:1.2.1-1.1) ... 589s Setting up libpangoft2-1.0-0:s390x (1.51.0+ds-4) ... 589s Setting up libpangocairo-1.0-0:s390x (1.51.0+ds-4) ... 589s Setting up r-base-core (4.3.2-1build1) ... 589s 589s Creating config file /etc/R/Renviron with new version 589s Setting up r-cran-labeling (0.4.3-1) ... 589s Setting up r-cran-lattice (0.22-5-1) ... 589s Setting up r-cran-nlme (3.1.164-1) ... 589s Setting up r-cran-farver (2.1.1-1) ... 589s Setting up r-cran-viridislite (0.4.2-2) ... 589s Setting up r-cran-r6 (2.5.1-1) ... 589s Setting up r-cran-pkgkitten (0.2.3-1) ... 589s Setting up r-cran-magrittr (2.0.3-1) ... 589s Setting up r-cran-littler (0.3.19-1) ... 589s Setting up r-cran-rcpp (1.0.12-1) ... 589s Setting up r-cran-rlang (1.1.3-1) ... 589s Setting up littler (0.3.19-1) ... 589s Setting up r-cran-withr (2.5.0-1) ... 589s Setting up r-cran-fansi (1.0.5-1) ... 589s Setting up r-cran-mass (7.3-60.0.1-1) ... 589s Setting up r-cran-glue (1.7.0-1) ... 589s Setting up r-cran-cli (3.6.2-1) ... 589s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 589s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 589s Setting up r-cran-utf8 (1.2.4-1) ... 589s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 589s Setting up r-cran-plyr (1.8.9-1) ... 589s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 589s Setting up r-cran-isoband (0.2.7-1) ... 589s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 589s Setting up r-cran-matrix (1.6-5-1) ... 589s Setting up r-cran-mgcv (1.9-1-1) ... 589s Setting up r-cran-vctrs (0.6.5-1) ... 589s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 589s Setting up r-cran-munsell (0.5.0-2build1) ... 589s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 589s Setting up r-cran-scales (1.3.0-1) ... 589s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 589s Setting up assemblytics (1.2.1+dfsg-2) ... 589s Setting up autopkgtest-satdep (0) ... 589s Processing triggers for man-db (2.12.0-3) ... 590s Processing triggers for install-info (7.1-3) ... 590s Processing triggers for libc-bin (2.39-0ubuntu2) ... 596s (Reading database ... 58407 files and directories currently installed.) 596s Removing autopkgtest-satdep (0) ... 598s autopkgtest [07:08:07]: test run-unit-test: [----------------------- 598s Input delta file: sample.delta 598s Output prefix: myfirstorganism 598s Unique anchor length: 10000 598s Minimum variant size to call: 10000 598s Maximum variant size to call: 50 598s Logging progress updates in myfirstorganism/progress.log 598s script path: /usr/share/assemblytics/bin 598s 1. Filter delta file 598s Keeping fully unique alignments even if they are below the unique anchor length of 10000 bp 598s Use --unique-length X to set the unique anchor length requirement. Default is 10000, such that each alignment must have at least 10000 bp from the query that are not included in any other alignments. 598s Detected uncompressed delta file. Reading... 598s 598s 598s Header (2 lines): 598s /seq/schatz/mnattest/Assemblytics/Ecoli/GCF_000005845.2_ASM584v2_genomic.fna /seq/schatz/mnattest/Assemblytics/Ecoli/GCF_000801205.1_ASM80120v1_genomic.fna 598s NUCMER 598s 598s 598s First read through the file: 0 seconds for 0 query-reference combinations 598s Filtering alignments of 1 queries 598s Progress: 100% 598s Progress: 100% 598s Deciding which alignments to keep: 0 seconds for 1 queries 598s Detected uncompressed delta file. Reading... 598s Reading file and recording all the entries we decided to keep: 0 seconds for 54 total lines in file 598s 2. Finding variants between alignments 598s Loaded 6 alignments 598s 3. Finding variants within alignments 598s Detected gzipped delta file. Reading... 598s 598s 598s Header (2 lines): 598s /seq/schatz/mnattest/Assemblytics/Ecoli/GCF_000005845.2_ASM584v2_genomic.fna /seq/schatz/mnattest/Assemblytics/Ecoli/GCF_000801205.1_ASM80120v1_genomic.fna 598s NUCMER 598s 598s 598s 4. Combine variants between and within alignments 599s Error in revalue(bed$type, c(Repeat_expansion = "Repeat expansion", Repeat_contraction = "Repeat contraction", : 599s x is not a factor or a character vector. 599s Execution halted 600s Warning messages: 600s 1: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. 600s ℹ Please use `linewidth` instead. 600s 2: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. 600s ℹ Please use the `linewidth` argument instead. 600s null device 600s 1 602s Warning message: 602s Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. 602s ℹ Please use `linewidth` instead. 602s adding: myfirstorganism.Assemblytics.Dotplot_filtered.png (deflated 11%) 602s adding: myfirstorganism.Assemblytics.Nchart.pdf (deflated 11%) 602s adding: myfirstorganism.Assemblytics.Nchart.png (deflated 6%) 602s adding: myfirstorganism.Assemblytics.unique_length_filtered_l10000.delta.gz (stored 0%) 602s adding: myfirstorganism.Assemblytics_assembly_stats.txt (deflated 58%) 602s adding: myfirstorganism.Assemblytics_structural_variants.bed (deflated 26%) 602s adding: myfirstorganism.Assemblytics_structural_variants.summary (deflated 49%) 602s adding: myfirstorganism.Assemblytics_structural_variants.summary.csv (deflated 35%) 602s PASS 603s autopkgtest [07:08:12]: test run-unit-test: -----------------------] 603s autopkgtest [07:08:12]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 603s run-unit-test PASS 604s autopkgtest [07:08:13]: @@@@@@@@@@@@@@@@@@@@ summary 604s run-unit-test PASS 624s Creating nova instance adt-noble-s390x-assemblytics-20240313-065808-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-s390x-server-20240312.img (UUID b0773a3c-d6d5-492e-ad15-d4b10dff01a1)...