0s autopkgtest [11:29:57]: starting date and time: 2024-03-23 11:29:57+0000 0s autopkgtest [11:29:57]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [11:29:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lo6gej9s/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sphinx --apt-upgrade xpore --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-10.secgroup --name adt-noble-ppc64el-xpore-20240323-112957-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 111s autopkgtest [11:31:48]: testbed dpkg architecture: ppc64el 111s autopkgtest [11:31:48]: testbed apt version: 2.7.12 111s autopkgtest [11:31:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 112s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 113s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 113s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 113s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 113s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4029 kB] 113s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 113s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 113s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 113s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 113s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4252 kB] 114s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 114s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 114s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 117s Fetched 9690 kB in 3s (3830 kB/s) 117s Reading package lists... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Calculating upgrade... 120s The following packages will be upgraded: 120s libbsd0 libc-bin libc6 locales 120s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 8313 kB of archives. 120s After this operation, 2048 B of additional disk space will be used. 120s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6 ppc64el 2.39-0ubuntu6 [3274 kB] 121s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-bin ppc64el 2.39-0ubuntu6 [751 kB] 121s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libbsd0 ppc64el 0.12.1-1 [56.9 kB] 121s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el locales all 2.39-0ubuntu6 [4232 kB] 121s Preconfiguring packages ... 121s Fetched 8313 kB in 1s (8140 kB/s) 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 122s Preparing to unpack .../libc6_2.39-0ubuntu6_ppc64el.deb ... 122s Unpacking libc6:ppc64el (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 122s Setting up libc6:ppc64el (2.39-0ubuntu6) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 122s Preparing to unpack .../libc-bin_2.39-0ubuntu6_ppc64el.deb ... 122s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 123s Setting up libc-bin (2.39-0ubuntu6) ... 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 123s Preparing to unpack .../libbsd0_0.12.1-1_ppc64el.deb ... 123s Unpacking libbsd0:ppc64el (0.12.1-1) over (0.11.8-1) ... 123s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 123s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 123s Setting up locales (2.39-0ubuntu6) ... 123s Generating locales (this might take a while)... 125s en_US.UTF-8... done 125s Generation complete. 125s Setting up libbsd0:ppc64el (0.12.1-1) ... 125s Processing triggers for man-db (2.12.0-3) ... 126s Processing triggers for libc-bin (2.39-0ubuntu6) ... 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s sh: Attempting to set up Debian/Ubuntu apt sources automatically 127s sh: Distribution appears to be Ubuntu 127s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s eatmydata is already the newest version (131-1). 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s dbus is already the newest version (1.14.10-4ubuntu1). 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s rng-tools-debian is already the newest version (2.4). 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s The following packages will be REMOVED: 129s cloud-init* python3-configobj* python3-debconf* 129s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 129s After this operation, 3256 kB disk space will be freed. 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 129s Removing cloud-init (24.1.2-0ubuntu1) ... 129s Removing python3-configobj (5.0.8-3) ... 130s Removing python3-debconf (1.5.86) ... 130s Processing triggers for man-db (2.12.0-3) ... 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69767 files and directories currently installed.) 130s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 131s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 131s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 131s invoke-rc.d: policy-rc.d denied execution of try-restart. 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s linux-generic is already the newest version (6.8.0-11.11+1). 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 132s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 132s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 134s Reading package lists... 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 135s Calculating upgrade... 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s autopkgtest [11:32:12]: rebooting testbed after setup commands that affected boot 299s autopkgtest [11:34:56]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 303s autopkgtest [11:35:00]: @@@@@@@@@@@@@@@@@@@@ apt-source xpore 310s Get:1 http://ftpmaster.internal/ubuntu noble/universe xpore 2.1-2 (dsc) [1727 B] 310s Get:2 http://ftpmaster.internal/ubuntu noble/universe xpore 2.1-2 (tar) [84.3 MB] 310s Get:3 http://ftpmaster.internal/ubuntu noble/universe xpore 2.1-2 (tar) [169 kB] 310s Get:4 http://ftpmaster.internal/ubuntu noble/universe xpore 2.1-2 (diff) [9684 B] 310s gpgv: Signature made Sun Dec 31 22:02:48 2023 UTC 310s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 310s gpgv: Can't check signature: No public key 310s dpkg-source: warning: cannot verify inline signature for ./xpore_2.1-2.dsc: no acceptable signature found 312s autopkgtest [11:35:09]: testing package xpore version 2.1-2 312s autopkgtest [11:35:09]: build not needed 320s autopkgtest [11:35:17]: test run-data-preprocess-test: preparing testbed 324s Reading package lists... 324s Building dependency tree... 324s Reading state information... 325s Starting pkgProblemResolver with broken count: 0 325s Starting 2 pkgProblemResolver with broken count: 0 325s Done 325s The following additional packages will be installed: 325s libaec0 libblas3 libdouble-conversion3 libgfortran5 libhdf5-103-1 325s libhdf5-hl-100 liblapack3 liblbfgsb0 liblzf1 libsz2 pyensembl pylint 325s python3-appdirs python3-astroid python3-datacache python3-dateutil 325s python3-decorator python3-dill python3-gtfparse python3-h5py 325s python3-h5py-serial python3-importlib-metadata python3-isort 325s python3-logilab-common python3-mccabe python3-memoized-property 325s python3-more-itertools python3-mypy-extensions python3-numpy python3-pandas 325s python3-pandas-lib python3-platformdirs python3-scipy python3-serializable 325s python3-simplejson python3-toml python3-tomlkit python3-typechecks 325s python3-ujson python3-zipp xpore 325s Suggested packages: 325s python3-objgraph python-h5py-doc gcc gfortran python3-dev python3-pytest 325s python-pandas-doc python3-statsmodels python-scipy-doc xpore-doc 325s Recommended packages: 325s python3-tk python3-matplotlib python3-bottleneck python3-numexpr python3-odf 325s python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables 325s g++ | c++-compiler python3-pil 325s The following NEW packages will be installed: 325s autopkgtest-satdep libaec0 libblas3 libdouble-conversion3 libgfortran5 325s libhdf5-103-1 libhdf5-hl-100 liblapack3 liblbfgsb0 liblzf1 libsz2 pyensembl 325s pylint python3-appdirs python3-astroid python3-datacache python3-dateutil 325s python3-decorator python3-dill python3-gtfparse python3-h5py 325s python3-h5py-serial python3-importlib-metadata python3-isort 325s python3-logilab-common python3-mccabe python3-memoized-property 325s python3-more-itertools python3-mypy-extensions python3-numpy python3-pandas 325s python3-pandas-lib python3-platformdirs python3-scipy python3-serializable 325s python3-simplejson python3-toml python3-tomlkit python3-typechecks 325s python3-ujson python3-zipp xpore 325s 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. 325s Need to get 47.1 MB/47.1 MB of archives. 325s After this operation, 269 MB of additional disk space will be used. 325s Get:1 /tmp/autopkgtest.i8xTEv/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [704 B] 325s Get:2 http://ftpmaster.internal/ubuntu noble/universe ppc64el libaec0 ppc64el 1.1.2-1 [29.9 kB] 325s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 325s Get:4 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdouble-conversion3 ppc64el 3.3.0-1 [43.3 kB] 325s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 325s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsz2 ppc64el 1.1.2-1 [5472 B] 325s Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhdf5-103-1 ppc64el 1.10.10+repack-3ubuntu1 [1375 kB] 325s Get:8 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhdf5-hl-100 ppc64el 1.10.10+repack-3ubuntu1 [69.9 kB] 325s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 326s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1 [32.8 kB] 326s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 326s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-astroid all 3.0.2-2 [174 kB] 326s Get:13 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-toml all 0.10.2-1 [16.5 kB] 326s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-isort all 5.6.4-1 [63.1 kB] 326s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-more-itertools all 10.2.0-1 [52.9 kB] 326s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-zipp all 1.0.0-6 [6090 B] 326s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-importlib-metadata all 4.12.0-1 [17.8 kB] 326s Get:18 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mypy-extensions all 1.0.0-1 [6148 B] 326s Get:19 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-logilab-common all 1.9.8-2 [280 kB] 326s Get:20 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-dill all 0.3.8-1 [83.0 kB] 326s Get:21 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mccabe all 0.7.0-1 [8678 B] 326s Get:22 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-platformdirs all 4.2.0-1 [16.1 kB] 326s Get:23 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-tomlkit all 0.12.4-1 [37.5 kB] 326s Get:24 http://ftpmaster.internal/ubuntu noble/universe ppc64el pylint all 3.0.3-1 [337 kB] 326s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 326s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB] 326s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 326s Get:28 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-4ubuntu2 [8837 kB] 326s Get:29 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 326s Get:30 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-typechecks all 0.1.0+ds-3 [4440 B] 326s Get:31 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-datacache all 1.2.1-2 [12.8 kB] 326s Get:32 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-gtfparse all 1.3.0+ds-1 [10.1 kB] 326s Get:33 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-memoized-property all 1.0.3-2 [5286 B] 326s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-simplejson ppc64el 3.19.2-1build1 [70.4 kB] 326s Get:35 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-serializable all 0.4.0+ds-1 [8210 B] 326s Get:36 http://ftpmaster.internal/ubuntu noble/universe ppc64el pyensembl all 2.3.9-2 [36.8 kB] 326s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 327s Get:38 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-h5py-serial ppc64el 3.10.0-1ubuntu1 [1635 kB] 327s Get:39 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-h5py all 3.10.0-1ubuntu1 [7970 B] 327s Get:40 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-ujson ppc64el 5.9.0-1 [37.0 kB] 327s Get:41 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-scipy ppc64el 1.11.4-6 [21.4 MB] 327s Get:42 http://ftpmaster.internal/ubuntu noble/universe ppc64el xpore all 2.1-2 [42.9 kB] 327s Fetched 47.1 MB in 2s (19.9 MB/s) 327s Selecting previously unselected package libaec0:ppc64el. 328s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69712 files and directories currently installed.) 328s Preparing to unpack .../00-libaec0_1.1.2-1_ppc64el.deb ... 328s Unpacking libaec0:ppc64el (1.1.2-1) ... 328s Selecting previously unselected package libblas3:ppc64el. 328s Preparing to unpack .../01-libblas3_3.12.0-3_ppc64el.deb ... 328s Unpacking libblas3:ppc64el (3.12.0-3) ... 328s Selecting previously unselected package libdouble-conversion3:ppc64el. 328s Preparing to unpack .../02-libdouble-conversion3_3.3.0-1_ppc64el.deb ... 328s Unpacking libdouble-conversion3:ppc64el (3.3.0-1) ... 328s Selecting previously unselected package libgfortran5:ppc64el. 328s Preparing to unpack .../03-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 328s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 328s Selecting previously unselected package libsz2:ppc64el. 328s Preparing to unpack .../04-libsz2_1.1.2-1_ppc64el.deb ... 328s Unpacking libsz2:ppc64el (1.1.2-1) ... 328s Selecting previously unselected package libhdf5-103-1:ppc64el. 328s Preparing to unpack .../05-libhdf5-103-1_1.10.10+repack-3ubuntu1_ppc64el.deb ... 328s Unpacking libhdf5-103-1:ppc64el (1.10.10+repack-3ubuntu1) ... 328s Selecting previously unselected package libhdf5-hl-100:ppc64el. 328s Preparing to unpack .../06-libhdf5-hl-100_1.10.10+repack-3ubuntu1_ppc64el.deb ... 328s Unpacking libhdf5-hl-100:ppc64el (1.10.10+repack-3ubuntu1) ... 328s Selecting previously unselected package liblapack3:ppc64el. 328s Preparing to unpack .../07-liblapack3_3.12.0-3_ppc64el.deb ... 328s Unpacking liblapack3:ppc64el (3.12.0-3) ... 328s Selecting previously unselected package liblbfgsb0:ppc64el. 328s Preparing to unpack .../08-liblbfgsb0_3.0+dfsg.4-1_ppc64el.deb ... 328s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1) ... 328s Selecting previously unselected package liblzf1:ppc64el. 328s Preparing to unpack .../09-liblzf1_3.6-4_ppc64el.deb ... 328s Unpacking liblzf1:ppc64el (3.6-4) ... 328s Selecting previously unselected package python3-astroid. 328s Preparing to unpack .../10-python3-astroid_3.0.2-2_all.deb ... 328s Unpacking python3-astroid (3.0.2-2) ... 328s Selecting previously unselected package python3-toml. 328s Preparing to unpack .../11-python3-toml_0.10.2-1_all.deb ... 328s Unpacking python3-toml (0.10.2-1) ... 328s Selecting previously unselected package python3-isort. 328s Preparing to unpack .../12-python3-isort_5.6.4-1_all.deb ... 328s Unpacking python3-isort (5.6.4-1) ... 328s Selecting previously unselected package python3-more-itertools. 328s Preparing to unpack .../13-python3-more-itertools_10.2.0-1_all.deb ... 328s Unpacking python3-more-itertools (10.2.0-1) ... 328s Selecting previously unselected package python3-zipp. 328s Preparing to unpack .../14-python3-zipp_1.0.0-6_all.deb ... 328s Unpacking python3-zipp (1.0.0-6) ... 328s Selecting previously unselected package python3-importlib-metadata. 328s Preparing to unpack .../15-python3-importlib-metadata_4.12.0-1_all.deb ... 328s Unpacking python3-importlib-metadata (4.12.0-1) ... 328s Selecting previously unselected package python3-mypy-extensions. 328s Preparing to unpack .../16-python3-mypy-extensions_1.0.0-1_all.deb ... 328s Unpacking python3-mypy-extensions (1.0.0-1) ... 328s Selecting previously unselected package python3-logilab-common. 328s Preparing to unpack .../17-python3-logilab-common_1.9.8-2_all.deb ... 328s Unpacking python3-logilab-common (1.9.8-2) ... 328s Selecting previously unselected package python3-dill. 328s Preparing to unpack .../18-python3-dill_0.3.8-1_all.deb ... 328s Unpacking python3-dill (0.3.8-1) ... 328s Selecting previously unselected package python3-mccabe. 328s Preparing to unpack .../19-python3-mccabe_0.7.0-1_all.deb ... 328s Unpacking python3-mccabe (0.7.0-1) ... 328s Selecting previously unselected package python3-platformdirs. 328s Preparing to unpack .../20-python3-platformdirs_4.2.0-1_all.deb ... 328s Unpacking python3-platformdirs (4.2.0-1) ... 328s Selecting previously unselected package python3-tomlkit. 328s Preparing to unpack .../21-python3-tomlkit_0.12.4-1_all.deb ... 328s Unpacking python3-tomlkit (0.12.4-1) ... 328s Selecting previously unselected package pylint. 328s Preparing to unpack .../22-pylint_3.0.3-1_all.deb ... 328s Unpacking pylint (3.0.3-1) ... 328s Selecting previously unselected package python3-appdirs. 328s Preparing to unpack .../23-python3-appdirs_1.4.4-4_all.deb ... 328s Unpacking python3-appdirs 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demo/data/HEK293T-WT-rep1/fast5/GISPC936_20181120_FAK27249_MN18749_sequencing_run_SHO_20112018_EmptyE2_9_36177_read_362_ch_323_strand.fast5 349s demo/data/HEK293T-WT-rep1/fast5/GISPC936_20181120_FAK27249_MN18749_sequencing_run_SHO_20112018_EmptyE2_9_36177_read_6952_ch_151_strand.fast5 349s demo/data/HEK293T-WT-rep1/fast5/GISPC936_20181120_FAK27249_MN18749_sequencing_run_SHO_20112018_EmptyE2_9_36177_read_14068_ch_261_strand.fast5 349s demo/data/HEK293T-WT-rep1/fast5/GISPC936_20181120_FAK27249_MN18749_sequencing_run_SHO_20112018_EmptyE2_9_36177_read_984_ch_476_strand.fast5 349s demo/data/HEK293T-WT-rep1/fast5/GISPC936_20181120_FAK27249_MN18749_sequencing_run_SHO_20112018_EmptyE2_9_36177_read_423_ch_142_strand.fast5 349s demo/data/HEK293T-WT-rep1/fast5/GISPC936_20181120_FAK27249_MN18749_sequencing_run_SHO_20112018_EmptyE2_9_36177_read_1857_ch_501_strand.fast5 349s demo/data/HEK293T-WT-rep1/fastq/ 349s demo/data/HEK293T-WT-rep1/fastq/basecalled.fastq 349s demo/data/HEK293T-WT-rep1/fastq/basecalled.fastq.index.readdb 349s demo/data/HEK293T-WT-rep1/fastq/basecalled.fastq.index.fai 349s demo/data/HEK293T-WT-rep1/fastq/basecalled.fastq.index 349s demo/data/HEK293T-WT-rep1/fastq/basecalled.fastq.index.gzi 349s demo/data/HEK293T-WT-rep1/nanopolish/ 349s demo/data/HEK293T-WT-rep1/nanopolish/summary.txt 349s demo/data/HEK293T-WT-rep1/nanopolish/eventalign.txt 349s demo/Hek293T_config.yml 352s /usr/lib/python3/dist-packages/xpore/scripts/dataprep.py:72: SettingWithCopyWarning: 352s A value is trying to be set on a copy of a slice from a DataFrame. 352s Try using .loc[row_indexer,col_indexer] = value instead 352s 352s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 352s chunk_split['line_length'] = np.array(lines) 352s /usr/lib/python3/dist-packages/xpore/scripts/dataprep.py:21: PerformanceWarning: indexing past lexsort depth may impact performance. 352s pos_end += eventalign_result.loc[index]['line_length'].sum() 359s Output Directory Generated 359s PASS 359s autopkgtest [11:35:56]: test run-data-preprocess-test: -----------------------] 360s run-data-preprocess-test PASS 360s autopkgtest [11:35:57]: test run-data-preprocess-test: - - - - - - - - - - results - - - - - - - - - - 360s autopkgtest [11:35:57]: @@@@@@@@@@@@@@@@@@@@ summary 360s run-data-preprocess-test PASS 371s Creating nova instance adt-noble-ppc64el-xpore-20240323-112957-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240322.img (UUID 8499323f-6fcd-4f77-8a53-77410adea6d3)...